Query 031039
Match_columns 167
No_of_seqs 172 out of 1571
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3135 1,4-benzoquinone reduc 100.0 1.4E-32 3.1E-37 202.8 14.8 166 1-166 35-203 (203)
2 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 1.3E-28 2.8E-33 190.4 17.5 161 2-163 36-197 (197)
3 PRK03767 NAD(P)H:quinone oxido 100.0 4.8E-28 1E-32 187.4 18.3 138 27-165 62-200 (200)
4 COG0655 WrbA Multimeric flavod 99.9 6.2E-21 1.4E-25 148.3 13.3 144 20-164 62-206 (207)
5 PRK11921 metallo-beta-lactamas 99.7 4E-17 8.6E-22 138.1 9.3 111 16-160 283-393 (394)
6 PRK05452 anaerobic nitric oxid 99.7 9.5E-17 2.1E-21 138.8 9.8 111 16-161 287-397 (479)
7 PRK05569 flavodoxin; Provision 99.7 5.4E-16 1.2E-20 113.3 12.2 102 23-157 37-140 (141)
8 PRK06242 flavodoxin; Provision 99.7 3.4E-16 7.4E-21 115.3 10.0 111 29-159 38-149 (150)
9 PRK06756 flavodoxin; Provision 99.7 2.2E-15 4.8E-20 111.1 11.8 103 29-160 44-147 (148)
10 PRK05568 flavodoxin; Provision 99.6 2.4E-15 5.3E-20 109.9 11.3 102 24-158 38-141 (142)
11 TIGR01753 flav_short flavodoxi 99.6 4.1E-15 9E-20 107.8 11.3 105 23-157 34-140 (140)
12 PRK06703 flavodoxin; Provision 99.6 9.9E-15 2.2E-19 108.0 11.7 110 25-163 39-150 (151)
13 COG0426 FpaA Uncharacterized f 99.6 1.3E-15 2.9E-20 127.1 6.6 121 4-158 267-388 (388)
14 PF03358 FMN_red: NADPH-depend 99.6 2.2E-15 4.8E-20 111.1 5.7 87 21-110 58-144 (152)
15 PRK07308 flavodoxin; Validated 99.6 6.8E-14 1.5E-18 103.0 11.3 108 23-159 37-145 (146)
16 TIGR03566 FMN_reduc_MsuE FMN r 99.5 6.9E-14 1.5E-18 105.9 8.9 110 29-161 63-172 (174)
17 PRK10569 NAD(P)H-dependent FMN 99.5 1.8E-13 3.8E-18 105.4 11.1 117 23-161 56-173 (191)
18 TIGR03567 FMN_reduc_SsuE FMN r 99.5 3.5E-13 7.6E-18 101.9 10.0 114 24-158 56-170 (171)
19 PRK00170 azoreductase; Reviewe 99.4 8.5E-13 1.8E-17 101.6 7.8 84 24-108 77-171 (201)
20 TIGR02690 resist_ArsH arsenica 99.4 9E-12 1.9E-16 97.7 11.8 119 29-164 85-204 (219)
21 PRK09267 flavodoxin FldA; Vali 99.3 7.5E-11 1.6E-15 88.7 12.9 127 24-158 36-165 (169)
22 PRK01355 azoreductase; Reviewe 99.3 2E-11 4.4E-16 94.4 9.4 85 23-108 67-165 (199)
23 PRK13556 azoreductase; Provisi 99.3 3.3E-11 7.2E-16 93.7 10.4 80 29-108 84-177 (208)
24 PRK09739 hypothetical protein; 99.3 5.7E-12 1.2E-16 97.3 5.6 60 23-83 69-132 (199)
25 PRK13555 azoreductase; Provisi 99.2 2.7E-10 5.8E-15 88.9 11.6 78 29-106 84-175 (208)
26 PRK09271 flavodoxin; Provision 99.2 5.6E-11 1.2E-15 88.9 5.8 111 16-161 34-148 (160)
27 PF02525 Flavodoxin_2: Flavodo 99.2 3.1E-10 6.7E-15 87.4 10.1 80 29-108 73-173 (199)
28 PRK04930 glutathione-regulated 99.1 7.7E-10 1.7E-14 84.7 10.5 80 29-108 56-150 (184)
29 COG1182 AcpD Acyl carrier prot 99.1 4.1E-10 8.8E-15 86.6 8.7 80 29-108 82-174 (202)
30 COG0431 Predicted flavoprotein 99.1 3.1E-10 6.8E-15 86.8 8.0 76 29-109 62-137 (184)
31 PRK00871 glutathione-regulated 99.1 6.8E-10 1.5E-14 84.5 8.2 80 29-108 50-142 (176)
32 TIGR01752 flav_long flavodoxin 99.0 4.2E-09 9.1E-14 79.3 10.2 83 23-109 33-118 (167)
33 PRK12359 flavodoxin FldB; Prov 99.0 1.9E-08 4.2E-13 76.3 13.1 90 23-116 34-126 (172)
34 PRK06934 flavodoxin; Provision 98.9 2.3E-09 4.9E-14 84.2 6.5 61 29-98 124-184 (221)
35 PF12682 Flavodoxin_4: Flavodo 98.8 7.3E-09 1.6E-13 77.4 5.3 61 29-98 68-128 (156)
36 TIGR01754 flav_RNR ribonucleot 98.7 6.9E-08 1.5E-12 70.5 8.8 65 29-100 45-112 (140)
37 PRK07116 flavodoxin; Provision 98.7 3.4E-08 7.3E-13 73.8 7.1 60 29-97 71-130 (160)
38 COG2249 MdaB Putative NADPH-qu 98.7 7.1E-08 1.5E-12 74.2 8.4 55 29-83 62-125 (189)
39 KOG4530 Predicted flavoprotein 98.7 5.5E-08 1.2E-12 72.1 6.6 69 29-105 81-149 (199)
40 PF12724 Flavodoxin_5: Flavodo 98.6 3.1E-08 6.8E-13 72.6 2.4 51 29-84 38-88 (143)
41 PRK09004 FMN-binding protein M 98.6 7.2E-07 1.6E-11 65.9 9.6 80 29-110 41-121 (146)
42 PF00258 Flavodoxin_1: Flavodo 98.5 2.7E-07 6E-12 67.1 5.1 83 29-111 40-127 (143)
43 PRK11104 hemG protoporphyrinog 98.4 2.5E-07 5.5E-12 70.4 4.1 48 29-81 41-88 (177)
44 PF12641 Flavodoxin_3: Flavodo 98.3 9.6E-06 2.1E-10 60.8 9.4 43 32-83 37-79 (160)
45 COG0716 FldA Flavodoxins [Ener 98.2 7E-06 1.5E-10 60.7 7.1 104 31-159 45-150 (151)
46 PRK08105 flavodoxin; Provision 98.2 1.9E-05 4.1E-10 58.4 9.0 77 32-110 46-123 (149)
47 PRK05723 flavodoxin; Provision 97.9 0.00029 6.2E-09 52.3 10.6 83 27-110 38-124 (151)
48 PRK10953 cysJ sulfite reductas 97.6 0.00061 1.3E-08 61.0 10.3 86 22-108 96-182 (600)
49 TIGR01931 cysJ sulfite reducta 97.4 0.0014 3E-08 58.7 10.1 87 22-109 93-180 (597)
50 TIGR00333 nrdI ribonucleoside- 97.0 0.012 2.5E-07 42.4 9.5 57 31-98 33-91 (125)
51 COG4635 HemG Flavodoxin [Energ 96.8 0.0009 2E-08 50.0 2.5 68 31-103 44-113 (175)
52 PRK03600 nrdI ribonucleotide r 96.8 0.0082 1.8E-07 43.7 7.5 88 31-156 35-128 (134)
53 KOG1159 NADP-dependent flavopr 71.7 10 0.00022 33.6 5.4 87 22-108 35-123 (574)
54 PF01210 NAD_Gly3P_dh_N: NAD-d 67.0 5.4 0.00012 29.2 2.6 42 29-81 64-105 (157)
55 PRK08410 2-hydroxyacid dehydro 64.8 78 0.0017 26.0 9.4 93 7-107 52-173 (311)
56 PRK02551 flavoprotein NrdI; Pr 62.8 61 0.0013 24.1 8.2 42 32-80 51-103 (154)
57 PF13344 Hydrolase_6: Haloacid 59.6 7.7 0.00017 26.4 2.1 56 34-106 4-59 (101)
58 PF07972 Flavodoxin_NdrI: NrdI 59.4 15 0.00033 26.2 3.6 42 32-80 35-81 (122)
59 PRK15438 erythronate-4-phospha 55.3 75 0.0016 27.1 7.7 78 21-107 66-144 (378)
60 PRK00961 H(2)-dependent methyl 53.7 1.3E+02 0.0028 25.0 9.5 101 29-159 136-237 (342)
61 PRK10834 vancomycin high tempe 53.5 25 0.00054 28.1 4.3 69 29-102 39-110 (239)
62 PRK00257 erythronate-4-phospha 51.3 85 0.0019 26.8 7.4 78 21-107 66-144 (381)
63 COG0386 BtuE Glutathione perox 49.5 1.1E+02 0.0024 23.0 7.5 43 68-110 22-65 (162)
64 TIGR01019 sucCoAalpha succinyl 49.3 94 0.002 25.4 7.2 66 28-110 54-122 (286)
65 PF04723 GRDA: Glycine reducta 47.6 92 0.002 22.9 6.0 63 68-156 2-64 (150)
66 cd01866 Rab2 Rab2 subfamily. 44.7 83 0.0018 22.5 5.7 75 29-107 71-145 (168)
67 cd03140 GATase1_PfpI_3 Type 1 44.2 39 0.00084 24.8 3.9 41 33-80 59-100 (170)
68 smart00175 RAB Rab subfamily o 43.1 86 0.0019 21.9 5.5 75 29-107 67-141 (164)
69 COG1780 NrdI Protein involved 42.8 1.3E+02 0.0029 22.0 7.9 54 20-80 24-83 (141)
70 COG0111 SerA Phosphoglycerate 41.6 2.1E+02 0.0045 23.9 8.7 92 8-107 56-170 (324)
71 TIGR01692 HIBADH 3-hydroxyisob 41.5 1.3E+02 0.0028 24.1 6.9 68 29-111 47-117 (288)
72 PRK06932 glycerate dehydrogena 40.8 2.1E+02 0.0044 23.6 9.5 93 7-107 54-175 (314)
73 TIGR01723 hmd_TIGR 5,10-methen 40.5 2.2E+02 0.0047 23.8 9.1 30 29-60 134-164 (340)
74 PRK05678 succinyl-CoA syntheta 40.5 1.5E+02 0.0033 24.3 7.1 66 28-110 56-124 (291)
75 PF09822 ABC_transp_aux: ABC-t 40.2 62 0.0013 25.7 4.8 68 29-107 191-266 (271)
76 TIGR02717 AcCoA-syn-alpha acet 37.7 2.2E+02 0.0048 24.6 8.1 68 29-109 58-128 (447)
77 cd04121 Rab40 Rab40 subfamily. 37.3 1E+02 0.0022 23.1 5.4 74 29-107 73-146 (189)
78 KOG2728 Uncharacterized conser 37.0 53 0.0011 26.7 3.7 34 42-81 7-40 (302)
79 PF00255 GSHPx: Glutathione pe 35.7 1.5E+02 0.0032 20.5 6.8 43 67-109 17-60 (108)
80 PRK11559 garR tartronate semia 34.7 2E+02 0.0042 23.0 6.9 67 30-111 54-123 (296)
81 PF04412 DUF521: Protein of un 34.5 1.3E+02 0.0027 26.1 5.9 66 33-109 288-355 (400)
82 PF03446 NAD_binding_2: NAD bi 33.9 1.8E+02 0.004 21.0 6.3 68 29-111 52-121 (163)
83 PF09314 DUF1972: Domain of un 33.4 93 0.002 23.8 4.5 33 72-104 2-36 (185)
84 PRK09393 ftrA transcriptional 33.4 48 0.001 27.0 3.1 46 29-81 70-116 (322)
85 PF06554 Olfactory_mark: Olfac 33.3 46 0.00099 24.2 2.6 17 146-162 108-124 (151)
86 COG1445 FrwB Phosphotransferas 33.2 41 0.0009 24.1 2.3 40 25-81 47-86 (122)
87 KOG0068 D-3-phosphoglycerate d 33.1 2E+02 0.0043 24.6 6.7 79 22-108 79-175 (406)
88 cd03141 GATase1_Hsp31_like Typ 32.9 80 0.0017 24.4 4.2 41 32-79 88-131 (221)
89 COG0061 nadF NAD kinase [Coenz 32.8 25 0.00054 28.5 1.4 22 31-52 162-187 (281)
90 cd06259 YdcF-like YdcF-like. Y 32.7 1.1E+02 0.0023 21.7 4.6 63 37-103 3-65 (150)
91 PF11382 DUF3186: Protein of u 32.6 83 0.0018 26.0 4.4 51 54-108 66-116 (308)
92 PRK13265 glycine/sarcosine/bet 32.2 2.1E+02 0.0045 21.1 5.9 63 68-156 3-65 (154)
93 PF00919 UPF0004: Uncharacteri 32.2 1.1E+02 0.0025 20.6 4.4 49 30-82 32-80 (98)
94 cd01867 Rab8_Rab10_Rab13_like 31.9 1.8E+02 0.0039 20.7 5.8 74 29-106 70-143 (167)
95 cd03138 GATase1_AraC_2 AraC tr 31.8 67 0.0014 23.9 3.5 45 29-80 64-113 (195)
96 PF02662 FlpD: Methyl-viologen 30.9 1.3E+02 0.0028 21.3 4.7 16 29-44 46-63 (124)
97 PRK14077 pnk inorganic polypho 30.0 30 0.00065 28.3 1.4 12 33-44 175-186 (287)
98 PRK06487 glycerate dehydrogena 29.5 3.2E+02 0.0069 22.4 9.8 92 8-107 56-176 (317)
99 PRK14818 NADH dehydrogenase su 29.1 1.6E+02 0.0034 22.5 5.0 47 29-84 65-111 (173)
100 PLN00125 Succinyl-CoA ligase [ 29.1 3.3E+02 0.0072 22.5 8.2 66 29-110 61-129 (300)
101 cd01979 Pchlide_reductase_N Pc 29.1 2.4E+02 0.0052 23.9 6.8 78 22-106 104-184 (396)
102 cd01868 Rab11_like Rab11-like. 28.9 2.1E+02 0.0045 20.1 5.7 48 29-80 70-117 (165)
103 PRK01185 ppnK inorganic polyph 28.8 28 0.0006 28.3 1.0 12 33-44 156-167 (271)
104 PRK12439 NAD(P)H-dependent gly 28.7 1.8E+02 0.0038 24.1 5.8 26 30-61 73-98 (341)
105 PRK02649 ppnK inorganic polyph 28.3 32 0.0007 28.4 1.3 13 32-44 178-190 (305)
106 PRK03372 ppnK inorganic polyph 28.2 33 0.00072 28.3 1.4 12 33-44 183-194 (306)
107 COG1587 HemD Uroporphyrinogen- 28.2 78 0.0017 24.9 3.5 43 29-79 45-87 (248)
108 TIGR01505 tartro_sem_red 2-hyd 28.1 3E+02 0.0065 21.9 7.0 71 29-111 50-120 (291)
109 PRK01911 ppnK inorganic polyph 28.1 29 0.00063 28.5 1.0 12 33-44 174-185 (292)
110 cd03147 GATase1_Ydr533c_like T 28.0 75 0.0016 25.0 3.3 41 31-78 91-134 (231)
111 cd01968 Nitrogenase_NifE_I Nit 27.9 2.1E+02 0.0046 24.3 6.3 80 22-107 103-189 (410)
112 TIGR03521 GldG gliding-associa 27.8 1E+02 0.0022 27.6 4.4 31 29-59 229-261 (552)
113 cd01965 Nitrogenase_MoFe_beta_ 27.6 2.1E+02 0.0045 24.5 6.2 81 22-107 98-187 (428)
114 cd01977 Nitrogenase_VFe_alpha 27.3 2.9E+02 0.0063 23.6 7.0 80 22-107 105-193 (415)
115 PF06283 ThuA: Trehalose utili 27.2 1.5E+02 0.0033 22.5 4.9 39 22-60 40-78 (217)
116 PRK03501 ppnK inorganic polyph 26.9 36 0.00079 27.5 1.4 12 33-44 147-158 (264)
117 PRK04885 ppnK inorganic polyph 26.6 38 0.00082 27.4 1.4 12 33-44 146-157 (265)
118 PRK11790 D-3-phosphoglycerate 26.4 4.1E+02 0.009 22.7 8.7 92 8-107 65-179 (409)
119 PRK04539 ppnK inorganic polyph 26.4 37 0.0008 27.9 1.3 12 33-44 179-190 (296)
120 PRK02645 ppnK inorganic polyph 26.3 38 0.00082 27.9 1.4 20 33-52 177-200 (305)
121 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 26.1 2.2E+02 0.0047 20.1 5.3 48 29-80 69-116 (166)
122 PRK14075 pnk inorganic polypho 26.0 39 0.00085 27.1 1.4 12 33-44 144-155 (256)
123 cd06578 HemD Uroporphyrinogen- 25.9 1.3E+02 0.0027 22.7 4.2 42 29-78 44-85 (239)
124 TIGR01383 not_thiJ DJ-1 family 25.9 79 0.0017 23.0 3.0 41 32-79 61-104 (179)
125 PRK00561 ppnK inorganic polyph 25.9 37 0.00079 27.5 1.2 12 33-44 135-146 (259)
126 PRK02231 ppnK inorganic polyph 25.8 39 0.00084 27.5 1.4 12 33-44 154-165 (272)
127 PRK01231 ppnK inorganic polyph 25.7 38 0.00083 27.8 1.3 13 32-44 172-184 (295)
128 PRK15409 bifunctional glyoxyla 25.6 3.9E+02 0.0084 22.1 9.4 93 7-107 55-174 (323)
129 cd04124 RabL2 RabL2 subfamily. 25.2 1.2E+02 0.0026 21.5 3.8 47 29-80 67-113 (161)
130 PRK12480 D-lactate dehydrogena 25.2 3.3E+02 0.0071 22.6 6.8 93 7-107 56-174 (330)
131 PRK03708 ppnK inorganic polyph 25.0 42 0.0009 27.3 1.4 20 33-52 163-186 (277)
132 PRK08811 uroporphyrinogen-III 24.9 1.2E+02 0.0027 24.2 4.1 16 29-44 64-79 (266)
133 cd03136 GATase1_AraC_ArgR_like 24.3 1.2E+02 0.0026 22.3 3.8 44 30-80 60-104 (185)
134 cd04158 ARD1 ARD1 subfamily. 24.1 1.5E+02 0.0033 21.2 4.2 49 30-81 62-110 (169)
135 PRK05928 hemD uroporphyrinogen 24.1 1.3E+02 0.0029 22.9 4.1 42 29-78 47-88 (249)
136 cd00154 Rab Rab family. Rab G 24.0 2.4E+02 0.0051 19.1 6.3 75 29-107 67-141 (159)
137 cd04101 RabL4 RabL4 (Rab-like4 24.0 1.3E+02 0.0029 21.0 3.8 48 29-81 70-117 (164)
138 TIGR01327 PGDH D-3-phosphoglyc 24.0 4.4E+02 0.0096 23.4 7.7 93 7-107 51-166 (525)
139 PRK02155 ppnK NAD(+)/NADH kina 24.0 43 0.00093 27.4 1.3 20 33-52 174-197 (291)
140 PRK04761 ppnK inorganic polyph 23.9 46 0.00099 26.7 1.4 19 34-52 133-155 (246)
141 PF00071 Ras: Ras family; Int 23.9 95 0.0021 21.8 3.0 74 30-107 67-140 (162)
142 PTZ00099 rab6; Provisional 23.8 1.5E+02 0.0033 21.8 4.2 47 29-79 47-93 (176)
143 PRK15059 tartronate semialdehy 23.7 3.3E+02 0.0071 22.0 6.4 70 30-111 51-120 (292)
144 TIGR03376 glycerol3P_DH glycer 23.5 4.2E+02 0.0092 22.2 7.2 17 30-46 78-94 (342)
145 TIGR01282 nifD nitrogenase mol 23.5 1.3E+02 0.0028 26.3 4.2 36 67-110 331-366 (466)
146 cd04161 Arl2l1_Arl13_like Arl2 23.2 2E+02 0.0043 20.6 4.7 50 29-81 61-110 (167)
147 PRK05752 uroporphyrinogen-III 23.1 1.2E+02 0.0026 23.8 3.7 25 29-60 50-74 (255)
148 COG0240 GpsA Glycerol-3-phosph 22.8 4.3E+02 0.0094 22.2 7.0 18 29-46 65-83 (329)
149 KOG2711 Glycerol-3-phosphate d 22.4 36 0.00078 28.9 0.5 22 24-46 96-117 (372)
150 PF10087 DUF2325: Uncharacteri 22.2 1.7E+02 0.0036 19.4 3.8 42 29-80 43-84 (97)
151 cd03148 GATase1_EcHsp31_like T 21.9 83 0.0018 24.8 2.5 29 32-60 94-125 (232)
152 KOG2178 Predicted sugar kinase 21.9 50 0.0011 28.4 1.3 15 31-45 282-296 (409)
153 cd04120 Rab12 Rab12 subfamily. 21.8 1.6E+02 0.0036 22.3 4.1 48 29-80 67-114 (202)
154 cd01862 Rab7 Rab7 subfamily. 21.6 1.9E+02 0.0042 20.3 4.3 52 29-80 67-118 (172)
155 PRK11574 oxidative-stress-resi 21.6 1.4E+02 0.0029 22.3 3.6 42 33-81 65-109 (196)
156 KOG2872 Uroporphyrinogen decar 21.6 1.9E+02 0.0042 24.1 4.5 36 67-112 242-282 (359)
157 CHL00023 ndhK NADH dehydrogena 21.5 2.4E+02 0.0052 22.4 4.9 46 29-83 66-111 (225)
158 PRK14813 NADH dehydrogenase su 21.3 2.3E+02 0.0049 21.9 4.7 49 29-86 62-110 (189)
159 cd00316 Oxidoreductase_nitroge 21.1 2.7E+02 0.0059 23.1 5.6 81 22-107 97-184 (399)
160 PRK02842 light-independent pro 21.1 4.1E+02 0.009 22.8 6.8 78 22-106 114-195 (427)
161 TIGR01862 N2-ase-Ialpha nitrog 20.9 4.7E+02 0.01 22.6 7.2 80 22-107 135-222 (443)
162 TIGR01861 ANFD nitrogenase iro 20.9 4.4E+02 0.0095 23.5 7.0 80 22-107 145-233 (513)
163 cd03135 GATase1_DJ-1 Type 1 gl 20.7 1E+02 0.0023 21.9 2.7 45 29-80 53-102 (163)
164 cd04162 Arl9_Arfrp2_like Arl9/ 20.5 2.3E+02 0.005 20.2 4.5 47 29-80 62-108 (164)
165 cd04122 Rab14 Rab14 subfamily. 20.5 3.2E+02 0.0069 19.2 5.9 75 29-107 69-143 (166)
166 cd04106 Rab23_lke Rab23-like s 20.5 2.9E+02 0.0062 19.1 5.0 47 29-80 69-115 (162)
167 cd01864 Rab19 Rab19 subfamily. 20.3 1.8E+02 0.004 20.4 4.0 48 29-80 70-117 (165)
168 COG1832 Predicted CoA-binding 20.3 2.4E+02 0.0053 20.7 4.4 34 70-107 15-48 (140)
169 COG1168 MalY Bifunctional PLP- 20.3 4.1E+02 0.0089 22.9 6.4 71 34-109 106-198 (388)
170 PRK14820 NADH dehydrogenase su 20.1 1.5E+02 0.0032 22.7 3.4 46 30-84 69-114 (180)
No 1
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=202.81 Aligned_cols=166 Identities=77% Similarity=1.203 Sum_probs=155.0
Q ss_pred CcccCCCCCHHHHhccCCCCCC-CCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEc
Q 031039 1 MVQVPETLPEEVLGKMSAPPKS-DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 79 (167)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s 79 (167)
|+||+|+|+++++.+|++.|++ |++.++.+.|.+||+.+||.||.++++++++|.|+|+...+|..+.|.||++++|.|
T Consensus 35 i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTRfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~S 114 (203)
T KOG3135|consen 35 IYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTRFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVS 114 (203)
T ss_pred EEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccccccCcHHHHHHHHhccCchhhhccccCCceeEEEe
Confidence 5799999999999999999985 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCcEEecCccc-cCCCcccccccccCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHH
Q 031039 80 TGSQGGGQETTALTAITQLVHHGMIFVPIGYT-FGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIA 157 (167)
Q Consensus 80 ~g~~~gg~~~~l~~l~~~l~~~g~~vv~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~e~l~~a~~lG~~la 157 (167)
.|..+||++++...-...|.+|||++|+.+|+ ......+++++++|++||++++++ ||...|.+.+|+.++..|+.++
T Consensus 115 tgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~ 194 (203)
T KOG3135|consen 115 TGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVHGGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFA 194 (203)
T ss_pred ccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhcccCCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHH
Confidence 99888899988888888899999999999998 444556688899999999999999 9999999999999999999999
Q ss_pred HHHHHhhcc
Q 031039 158 GIAKKLKGS 166 (167)
Q Consensus 158 ~~~~~l~~~ 166 (167)
+.+++|+++
T Consensus 195 ~~~kkl~~~ 203 (203)
T KOG3135|consen 195 EIVKKLKGP 203 (203)
T ss_pred HHHHHhcCC
Confidence 999999863
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.96 E-value=1.3e-28 Score=190.38 Aligned_cols=161 Identities=53% Similarity=0.889 Sum_probs=133.9
Q ss_pred cccCCCCCHHHHhccCCCCCCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 2 VQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
+.|++..+++.+...+...+++.+.++.+++.+||+||||||+|+++++++||.|+|++..+|....|.||++++|+|+|
T Consensus 36 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g 115 (197)
T TIGR01755 36 KRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTG 115 (197)
T ss_pred EeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccccCccHHHHHHHHhccccccccccCCCEEEEEEECC
Confidence 34555555555554444345566666679999999999999999999999999999999888877789999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHH
Q 031039 82 SQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIA 160 (167)
Q Consensus 82 ~~~gg~~~~l~~l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~e~l~~a~~lG~~la~~~ 160 (167)
|.+|+++.++..+...+..+||.+|+.++.+. .....+.+++|++||+.++.+ +++..|++.+++.|+.+|+|+|+.+
T Consensus 116 ~~~Gg~~~~l~~l~~~l~~~Gm~vv~~~~~~~-~~~~~~~~~gg~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a 194 (197)
T TIGR01755 116 TQHGGQESTILSTWTTLLHHGMIIVPLPYAAQ-EQMGVDEVRGGSPYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLA 194 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEeCCCcccc-cccccccccCCCCcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 98889999999999999999999999877532 222234457899999999987 6677899999999999999999999
Q ss_pred HHh
Q 031039 161 KKL 163 (167)
Q Consensus 161 ~~l 163 (167)
++|
T Consensus 195 ~~l 197 (197)
T TIGR01755 195 AKL 197 (197)
T ss_pred HhC
Confidence 886
No 3
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.96 E-value=4.8e-28 Score=187.44 Aligned_cols=138 Identities=57% Similarity=0.931 Sum_probs=121.1
Q ss_pred CChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 27 ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 27 ~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
.+.+++.+||+||||||+|++++++++|.|+|++..+|....|.||++++|+|+||.+|+++.++..+...+..+||.++
T Consensus 62 ~~~~~l~~aD~ii~gsPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 62 ATPDELADYDAIIFGTPTRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred cCHHHHHhCCEEEEEecccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 34899999999999999999999999999999998888777899999999999999888998999999999999999999
Q ss_pred cCccccCCCcccccccccCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 107 PIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
+.++.+. .+...+..++|++||+.++.+ +++..|++++++.|+.+|+|+|+++++|++
T Consensus 142 ~~~~~~~-~~~~~~~~~~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 142 GLPYAFQ-GQMDVDEVTGGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred CCCCccc-cccccccccCCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9877532 211223357899999999886 666789999999999999999999999975
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.86 E-value=6.2e-21 Score=148.34 Aligned_cols=144 Identities=44% Similarity=0.661 Sum_probs=115.7
Q ss_pred CCCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHH-hcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHH
Q 031039 20 PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA-TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQL 98 (167)
Q Consensus 20 ~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDr-l~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l 98 (167)
++|+..++ .++|.+||+|||||||||++++++||.|||| +..+|....|.+|+++.|++.+..+++++.++..+..++
T Consensus 62 ~dD~~~~i-~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~ 140 (207)
T COG0655 62 KDDDMNEI-YEKLLEADGIIFGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFF 140 (207)
T ss_pred CcccHHHH-HHHHHHCCEEEEeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHH
Confidence 44557777 8999999999999999999999999999999 777777678999999999999988888878899999999
Q ss_pred HHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031039 99 VHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 164 (167)
Q Consensus 99 ~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~ 164 (167)
..++|.+++.++.....-...+.+.+|.+|+....+...-..+.+.+++.++.++++.++...+++
T Consensus 141 ~~~~~~~v~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 141 LHHGMIVVGLGYGNAVVGSGVDLIKGGDPYGAVTQDEEDLSRPSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred HHcCCeEecccccccccCcccccccCCCCcccceeccccccccchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999998776532210012235678888888876622223667788999999999998877764
No 5
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.71 E-value=4e-17 Score=138.08 Aligned_cols=111 Identities=21% Similarity=0.185 Sum_probs=92.0
Q ss_pred cCCCCCCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHH
Q 031039 16 MSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAI 95 (167)
Q Consensus 16 ~~~~~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~ 95 (167)
++++++.+.+++ .+++.+||+||||||||++++.+.++.|++.+. ...++||++++|||+||.++ ++..+.
T Consensus 283 ~~~~~~~~~~~i-~~~~~~~d~ii~GspT~~~~~~~~~~~~l~~l~----~~~~~~K~~a~FGsygw~g~----a~~~~~ 353 (394)
T PRK11921 283 LYNSAKSDKNDI-ITEVFKSKAILVGSSTINRGILSSTAAILEEIK----GLGFKNKKAAAFGSYGWSGE----SVKIIT 353 (394)
T ss_pred EEECCCCCHHHH-HHHHHhCCEEEEECCCcCccccHHHHHHHHHhh----ccCcCCCEEEEEecCCCccH----HHHHHH
Confidence 455566666666 677889999999999999999899999999984 34789999999999999642 345788
Q ss_pred HHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031039 96 TQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 160 (167)
Q Consensus 96 ~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~ 160 (167)
+.|...|+.++++++.+ +..|+++++++|+++|++|++.+
T Consensus 354 ~~l~~~g~~~v~~~~~~-------------------------~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 354 ERLKKAGFEIVNDGIRE-------------------------LWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred HHHHHCCCEEccCcEEE-------------------------EeCCCHHHHHHHHHHHHHHHHhh
Confidence 88889999999877653 35688999999999999998754
No 6
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.69 E-value=9.5e-17 Score=138.84 Aligned_cols=111 Identities=22% Similarity=0.243 Sum_probs=91.4
Q ss_pred cCCCCCCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHH
Q 031039 16 MSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAI 95 (167)
Q Consensus 16 ~~~~~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~ 95 (167)
++++++.+.+++ ..++.+||+||||||||++++.++|+.|++.+. ...++||++++|||+||.+++ +..+.
T Consensus 287 ~~~v~~~~~~~i-~~~~~~ad~vilGspT~~~~~~p~~~~fl~~l~----~~~l~gK~~~vFGSygw~g~a----~~~~~ 357 (479)
T PRK05452 287 IFNVARSDKNEI-LTNVFRSKGVLVGSSTMNNVMMPKIAGLLEEIT----GLRFRNKRASAFGSHGWSGGA----VDRLS 357 (479)
T ss_pred EEECCCCCHHHH-HhHHhhCCEEEEECCccCCcchHHHHHHHHHhh----ccCcCCCEEEEEECCCcCcHH----HHHHH
Confidence 455566666666 677778999999999999999999999999984 346899999999999996433 45788
Q ss_pred HHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031039 96 TQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 161 (167)
Q Consensus 96 ~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~ 161 (167)
+.|...|++++. ++.+ +..|+++++++|+++|++|++.++
T Consensus 358 ~~l~~~g~~~~~-~l~~-------------------------~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 358 TRLQDAGFEMSL-SLKA-------------------------KWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred HHHHHCCCEEec-cEEE-------------------------EecCCHHHHHHHHHHHHHHHHHHh
Confidence 888899999975 4442 356999999999999999998765
No 7
>PRK05569 flavodoxin; Provisional
Probab=99.69 E-value=5.4e-16 Score=113.32 Aligned_cols=102 Identities=23% Similarity=0.226 Sum_probs=81.4
Q ss_pred CCCCCChhHHhhCCEEEEeccccCCCch--HHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHH
Q 031039 23 DVPIITPNELAEADGFVFGFPTRFGMMA--AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH 100 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~~~~~--~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~ 100 (167)
++.+.+..++.+||+||||||||+++++ ++++.|+|++.. ..++||++++|+|+||..+. .+..+...+..
T Consensus 37 ~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~----~~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~ 109 (141)
T PRK05569 37 HVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKL----TPNENKKCILFGSYGWDNGE---FMKLWKDRMKD 109 (141)
T ss_pred ECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhc----cCcCCCEEEEEeCCCCCCCc---HHHHHHHHHHH
Confidence 4444456799999999999999999864 689999999832 34789999999999997433 34567777788
Q ss_pred cCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031039 101 HGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIA 157 (167)
Q Consensus 101 ~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la 157 (167)
.|+.+++. +.+ +..|+++++++|+++|++|+
T Consensus 110 ~g~~~~~~-~~~-------------------------~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 110 YGFNVIGD-LAV-------------------------NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred CCCeEeee-EEE-------------------------ccCCCHHHHHHHHHHHHHHh
Confidence 89999874 331 35699999999999999986
No 8
>PRK06242 flavodoxin; Provisional
Probab=99.68 E-value=3.4e-16 Score=115.30 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=83.5
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+++.++|.||||+|+|+++++++++.|+|++. .+.||++++|+|+||..++. +..+...+...|+.+++.
T Consensus 38 ~~~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 38 PEDLSEYDLIGFGSGIYFGKFHKSLLKLIEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred cccHhHCCEEEEeCchhcCCcCHHHHHHHHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999999982 35899999999999975443 567888888899999875
Q ss_pred ccccCCCcccccccccCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHH
Q 031039 109 GYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGI 159 (167)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~e~l~~a~~lG~~la~~ 159 (167)
... .+...++...... .....|++++++.|+++|++|++.
T Consensus 109 ~~~-----------~g~~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 109 FSC-----------KGFDTFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred Eec-----------CCcccccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 221 1111222211100 123569999999999999999754
No 9
>PRK06756 flavodoxin; Provisional
Probab=99.65 E-value=2.2e-15 Score=111.12 Aligned_cols=103 Identities=24% Similarity=0.298 Sum_probs=87.0
Q ss_pred hhHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~-~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..++.++|+||||||||+ +.++..++.|++.+. ...++||++++|+++++..++...++..+.+.|...|+.++.
T Consensus 44 ~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~----~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 44 ASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMD----SIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHh----cCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcC
Confidence 578899999999999996 667778999999983 346899999999998775555667788999999999999998
Q ss_pred CccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031039 108 IGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 160 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~ 160 (167)
+++.+ +..|++++++.|+++|++|++.+
T Consensus 120 ~~~~~-------------------------~~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 120 EGLKV-------------------------ELTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred CCeEE-------------------------ecCCCHHHHHHHHHHHHHHHHhc
Confidence 77652 35799999999999999998753
No 10
>PRK05568 flavodoxin; Provisional
Probab=99.64 E-value=2.4e-15 Score=109.87 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=81.7
Q ss_pred CCCCChhHHhhCCEEEEeccccCCCch--HHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHc
Q 031039 24 VPIITPNELAEADGFVFGFPTRFGMMA--AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHH 101 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~~~~~--~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~ 101 (167)
+.+.+..++.+||+||||||||+++++ +.++.|++++. ..++||++++|+++||..+. ....+...+...
T Consensus 38 ~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~-----~~~~~k~~~~f~t~G~~~~~---~~~~~~~~l~~~ 109 (142)
T PRK05568 38 VSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESIS-----SLVKGKKLVLFGSYGWGDGE---WMRDWVERMEGY 109 (142)
T ss_pred CCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhh-----hhhCCCEEEEEEccCCCCCh---HHHHHHHHHHHC
Confidence 333445689999999999999999874 68999999983 24689999999999986432 345677777889
Q ss_pred CcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 102 GMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 102 g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
|+++++.++.. +..|+++++++|+++|+.|++
T Consensus 110 g~~~~~~~~~~-------------------------~~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 110 GANLVNEGLIV-------------------------NNTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred CCEEeCCcEEE-------------------------ecCCCHHHHHHHHHHHHHHHh
Confidence 99999876542 246899999999999999874
No 11
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.63 E-value=4.1e-15 Score=107.84 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=84.5
Q ss_pred CCCCCChhHHhhCCEEEEeccccCCC-ch-HHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHH
Q 031039 23 DVPIITPNELAEADGFVFGFPTRFGM-MA-AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH 100 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~~~-~~-~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~ 100 (167)
++.+....++.++|.||||||||+.+ ++ +.++.|++++.. ..++||++++|+++||... ...+...+...|..
T Consensus 34 ~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~----~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~ 108 (140)
T TIGR01753 34 EVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELED----IDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKE 108 (140)
T ss_pred EcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhh----CCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHH
Confidence 34445567899999999999999865 65 799999999842 3579999999999988643 44567788888888
Q ss_pred cCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031039 101 HGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIA 157 (167)
Q Consensus 101 ~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la 157 (167)
.|+.++.+++.. ...|+++++++|+++|++|+
T Consensus 109 ~g~~~v~~~~~~-------------------------~~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 109 AGATIIAEGLKV-------------------------DGDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred CCCEEecCCeee-------------------------ecCCCHHHHHHHHHHHHHhC
Confidence 999999876542 24688999999999999874
No 12
>PRK06703 flavodoxin; Provisional
Probab=99.61 E-value=9.9e-15 Score=107.97 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=88.8
Q ss_pred CCCChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCc
Q 031039 25 PIITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGM 103 (167)
Q Consensus 25 ~~~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~ 103 (167)
.+....++.++|.|||||||| .+.++..++.|++.+. ...+++|++++|++++|..+........+...|...|+
T Consensus 39 ~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~----~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~ 114 (151)
T PRK06703 39 DGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLE----NIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGA 114 (151)
T ss_pred hhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHh----cCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCC
Confidence 334456789999999999999 4778888999999983 24688999999999988644445666778889999999
Q ss_pred EEecCccccCCCcccccccccCCCCccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Q 031039 104 IFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPT-ELELEQAFHQGKHIAGIAKKL 163 (167)
Q Consensus 104 ~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~e~l~~a~~lG~~la~~~~~l 163 (167)
.+++.++.+ +..|+ ++++++|+++|++|++.++++
T Consensus 115 ~~~~~~~~~-------------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 115 ELVQEGLKI-------------------------ELAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred EEcccCeEE-------------------------ecCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 999877653 24565 699999999999999887765
No 13
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.60 E-value=1.3e-15 Score=127.13 Aligned_cols=121 Identities=26% Similarity=0.283 Sum_probs=101.3
Q ss_pred cCCCCCHHHHh-ccCCCCCCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCC
Q 031039 4 VPETLPEEVLG-KMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 82 (167)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~ 82 (167)
+++-|.+.+++ .++++...+.+++ .+++.+|++||+||||+++++++.+..++-.+. ....++|.+++|+|+||
T Consensus 267 iaegl~~~gv~v~~~~~~~~~~~eI-~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~v~----~~~~~~k~~~vfgS~GW 341 (388)
T COG0426 267 IAEGLMKEGVDVEVINLEDADPSEI-VEEILDAKGLVVGSPTINGGAHPPIQTALGYVL----ALAPKNKLAGVFGSYGW 341 (388)
T ss_pred HHHHhhhcCCceEEEEcccCCHHHH-HHHHhhcceEEEecCcccCCCCchHHHHHHHHH----hccCcCceEEEEeccCC
Confidence 44555666666 5788888899999 999999999999999999999999999999983 35678999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 83 QGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 83 ~~gg~~~~l~~l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
.++... .+.+.|...|+++...++.+ +..|+++++++|+++|++||+
T Consensus 342 ~g~av~----~i~~~l~~~g~~~~~~~i~v-------------------------k~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 342 SGEAVD----LIEEKLKDLGFEFGFDGIEV-------------------------KFRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred CCcchH----HHHHHHHhcCcEEeccceEE-------------------------EecCCHHHHHHHHHHHHHhcC
Confidence 865543 77788888999998765542 467999999999999999874
No 14
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.58 E-value=2.2e-15 Score=111.09 Aligned_cols=87 Identities=33% Similarity=0.497 Sum_probs=72.0
Q ss_pred CCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHH
Q 031039 21 KSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH 100 (167)
Q Consensus 21 ~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~ 100 (167)
+|++..+ .+++.+||+|||+||+|++++++.||+||||+.. +....+.||++++++++|+.. +...+...++..+..
T Consensus 58 ~d~~~~~-~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~-g~~~~~~~l~~~~~~ 134 (152)
T PF03358_consen 58 PDDVQEL-YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRR-GGLRALEQLRQILDY 134 (152)
T ss_dssp SHHHHHH-HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSS-TTHHHHHHHHHHHHH
T ss_pred cHHHHHH-HhceecCCeEEEeecEEcCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCc-HHHHHHHHHHHHHHH
Confidence 4566666 8999999999999999999999999999999954 335789999999998887654 445577788888889
Q ss_pred cCcEEecCcc
Q 031039 101 HGMIFVPIGY 110 (167)
Q Consensus 101 ~g~~vv~~~~ 110 (167)
+||.+++..+
T Consensus 135 ~~~~~~~~~~ 144 (152)
T PF03358_consen 135 LGMIVVPSGV 144 (152)
T ss_dssp TTBEEECCSE
T ss_pred CCCEEcCCcE
Confidence 9999998743
No 15
>PRK07308 flavodoxin; Validated
Probab=99.55 E-value=6.8e-14 Score=103.00 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=86.1
Q ss_pred CCCCCChhHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHc
Q 031039 23 DVPIITPNELAEADGFVFGFPTRF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHH 101 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~-~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~ 101 (167)
++++.+.+++.++|.||||+|||. +.++..++.|++.+.. ..++||++++||+++...++....+..+.+.+...
T Consensus 37 ~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~----~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~ 112 (146)
T PRK07308 37 ECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLAD----LDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALT 112 (146)
T ss_pred ecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHc
Confidence 333444567899999999999997 7788899999999843 46899999999996544345556677888888899
Q ss_pred CcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031039 102 GMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 159 (167)
Q Consensus 102 g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~ 159 (167)
|+.++.+++.+ +..|++++++.|+++|++|++.
T Consensus 113 g~~~~~~~~~~-------------------------~~~p~~~~~~~~~~~~~~l~~~ 145 (146)
T PRK07308 113 GATKGAESVKV-------------------------DLAAEDEDIERLEAFAEELAAK 145 (146)
T ss_pred CCeEccCcEEE-------------------------eCCCCHHHHHHHHHHHHHHHhh
Confidence 99998876542 3458899999999999999753
No 16
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.51 E-value=6.9e-14 Score=105.91 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=78.1
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+++.+||+|||+||+||+++++++|+|||++. ...|.||++++++++|...++ ......++..+...|+.+++.
T Consensus 63 ~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~----~~~l~~K~~~~v~~~g~~~~~-~~~~~~l~~~~~~l~~~~~~~ 137 (174)
T TIGR03566 63 LQAIESADLLVVGSPVYRGSYTGLFKHLFDLVD----PNALIGKPVLLAATGGSERHA-LMVEHQLRPLFGFFQALTLPT 137 (174)
T ss_pred HHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcC----HhHhCCCEEEEEEecCCccch-HHHHHHHHHHHHHhCcccccc
Confidence 789999999999999999999999999999984 256899999999887654333 233334666667778777653
Q ss_pred ccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031039 109 GYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 161 (167)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~ 161 (167)
.+.. ....+. ++ ...|++..++.+++.+.+++.+.
T Consensus 138 ~~~~-----------~~~~~~------~g-~l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 138 GVYA-----------SDADFA------DY-RLASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred eEEE-----------Ehhhhc------cc-cccCHHHHHHHHHHHHHHHHHhc
Confidence 2211 001111 12 24567778888888888887653
No 17
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.51 E-value=1.8e-13 Score=105.45 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=84.5
Q ss_pred CCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHH-HHHHHHHHHc
Q 031039 23 DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTA-LTAITQLVHH 101 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l-~~l~~~l~~~ 101 (167)
++..+ .++|.+||+|||+||+||+++++.+|+|||++. ...|.||++++++++|.. ++ ...+ ..++..+..+
T Consensus 56 ~~~~~-~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~----~~~l~~K~v~iiat~G~~-~~-~~~~~~~lr~~l~~l 128 (191)
T PRK10569 56 ALKTF-TEQLAQADGLIVATPVYKASFSGALKTLLDLLP----ERALEHKVVLPLATGGSV-AH-MLAVDYALKPVLSAL 128 (191)
T ss_pred HHHHH-HHHHHHCCEEEEECCccCCCCCHHHHHHHHhCC----hhhhCCCEEEEEEecCCc-hh-HHHHHHHHHHHHHHc
Confidence 33344 789999999999999999999999999999983 357899999999997654 23 3444 4566777788
Q ss_pred CcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031039 102 GMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 161 (167)
Q Consensus 102 g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~ 161 (167)
|+.++..+...... ... .+ +.+...+++..++.+++.+++++.+.
T Consensus 129 ~a~~~~~~~~~~~~-----------~~~--~~--d~~~~~d~~~~~rl~~~~~~~~~~~~ 173 (191)
T PRK10569 129 KAQEILHGVFADDS-----------QVI--DY--HHQPQFTPNLQTRLDEALETFWQALH 173 (191)
T ss_pred CCeecCceEEEech-----------hhh--cc--ccccccCHHHHHHHHHHHHHHHHHHc
Confidence 99887765432100 000 01 22334588999999999999987653
No 18
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.48 E-value=3.5e-13 Score=101.85 Aligned_cols=114 Identities=20% Similarity=0.112 Sum_probs=76.0
Q ss_pred CCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHH-HHHHHHHHHcC
Q 031039 24 VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTA-LTAITQLVHHG 102 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l-~~l~~~l~~~g 102 (167)
+..+ .+++.+||+|||+||+||+++|+.+|+|||++. ...|.||++++++++|.. ++ ...+ ..++..|..+|
T Consensus 56 ~~~l-~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~----~~~l~~K~v~~~~~gg~~-~~-~~~~~~~l~~~l~~l~ 128 (171)
T TIGR03567 56 IKAA-TAQVAQADGVVVATPVYKASYSGVLKALLDLLP----QRALRGKVVLPIATGGSI-AH-LLAIDYALKPVLSALG 128 (171)
T ss_pred HHHH-HHHHHHCCEEEEECCcccCCCCHHHHHHHHhCC----hhhhCCCEEEEEEcCCch-hH-HHHHHHHHHHHHHHcC
Confidence 3344 789999999999999999999999999999984 356899999988886543 22 2233 25677777889
Q ss_pred cEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 103 MIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 103 ~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
+.++.+.+..+.. . ..++.+|....|++.+++.++++++++.
T Consensus 129 ~~~~~~~v~~~~~-----------~---~~~d~~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 129 ARHILPGVFALDS-----------Q---IERDEDGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred CccccceEEEEhh-----------H---hccccCCccccCHHHHHHHHHHHHHHHh
Confidence 8654433321100 0 0011122211467777788888777653
No 19
>PRK00170 azoreductase; Reviewed
Probab=99.40 E-value=8.5e-13 Score=101.58 Aligned_cols=84 Identities=21% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---------cccCCCCCeEEEEEccCCCCCC--HHHHHH
Q 031039 24 VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---------RTQQLAGKPAGMFYSTGSQGGG--QETTAL 92 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~---------~~~~l~gK~~~~f~s~g~~~gg--~~~~l~ 92 (167)
+..+ .++|.+||+|||+||+||+++|+.+|.||||+.... ..+.++||++.+++++|..... ......
T Consensus 77 ~~~l-~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~ 155 (201)
T PRK00170 77 SDEL-LEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVP 155 (201)
T ss_pred HHHH-HHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHH
Confidence 3344 688999999999999999999999999999986421 0135799999999987754221 123455
Q ss_pred HHHHHHHHcCcEEecC
Q 031039 93 TAITQLVHHGMIFVPI 108 (167)
Q Consensus 93 ~l~~~l~~~g~~vv~~ 108 (167)
.+...+...||..+..
T Consensus 156 ~~~~~~~~~G~~~~~~ 171 (201)
T PRK00170 156 YLKTFLGFIGITDVEF 171 (201)
T ss_pred HHHHHHHhcCCCceEE
Confidence 5666677788877653
No 20
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.37 E-value=9e-12 Score=97.74 Aligned_cols=119 Identities=12% Similarity=0.055 Sum_probs=87.1
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc-ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWR-TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~-~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
.+.+.+||++||+||.|++++++.+|++||.+...|. ...+.||++++++++|+. +..+++..++..|..+++.+++
T Consensus 85 ~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~--~g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 85 RQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGS--QSFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred HHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcH--hHHHHHHHHHHHHHHCCCcccc
Confidence 4788899999999999999999999999999976543 235899999999876443 2456788899999999999987
Q ss_pred CccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031039 108 IGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 164 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~ 164 (167)
..+.++.. ...++.+|. ..+++..+..+++.+.+.+.++..+
T Consensus 163 ~~v~i~~a--------------~~~fd~~G~-l~d~~~~~~l~~~l~~~~~~~~~~~ 204 (219)
T TIGR02690 163 NQSSVAKA--------------FDEFDEAGR-MKPSDYYDRVVDVMEELTKFTLLTR 204 (219)
T ss_pred chhhhhhh--------------HhhcCcCCC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 64332111 111222232 4567778888888888887766543
No 21
>PRK09267 flavodoxin FldA; Validated
Probab=99.30 E-value=7.5e-11 Score=88.70 Aligned_cols=127 Identities=18% Similarity=0.144 Sum_probs=83.5
Q ss_pred CCCCChhHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCC--CHHHHHHHHHHHHHH
Q 031039 24 VPIITPNELAEADGFVFGFPTRF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG--GQETTALTAITQLVH 100 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~-~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g--g~~~~l~~l~~~l~~ 100 (167)
+++.+..++.++|.||||+|||+ +.+++.++.|++++. ...|+||++++|++++..+- .....+..+...+..
T Consensus 36 ~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~----~~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~ 111 (169)
T PRK09267 36 IAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELE----EIDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEP 111 (169)
T ss_pred hhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHh----cCCCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Confidence 33444578999999999999996 888899999999873 34689999999998654311 123456678888889
Q ss_pred cCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 101 HGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 101 ~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
.|+.+++.--..++.+.....++++..+|... |....++..+ ++.+++.+.|..
T Consensus 112 ~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~---d~~~~~~~td-~~i~~w~~~i~~ 165 (169)
T PRK09267 112 RGATIVGHWPTDGYTFEASKAVDDGKFVGLAL---DEDNQSELTD-ERIEAWVKQIKP 165 (169)
T ss_pred CCCEEECccCCCCccccccceeeCCEEEEEEe---cCCCchhhhH-HHHHHHHHHHHH
Confidence 99999986211122221112334555666542 3333344445 667777666654
No 22
>PRK01355 azoreductase; Reviewed
Probab=99.29 E-value=2e-11 Score=94.38 Aligned_cols=85 Identities=16% Similarity=0.089 Sum_probs=63.4
Q ss_pred CCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc---c-----c----ccCCCCCeEEEEEccCCCCCCH--H
Q 031039 23 DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL---W-----R----TQQLAGKPAGMFYSTGSQGGGQ--E 88 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~---~-----~----~~~l~gK~~~~f~s~g~~~gg~--~ 88 (167)
++..+ .+++.+||+|||+||+||+++|+++|+||||+... + . .+.++||++.+++++|...+.. .
T Consensus 67 ~~~~~-~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~ 145 (199)
T PRK01355 67 VSDKY-INQLKSVDKVVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWG 145 (199)
T ss_pred hHHHH-HHHHHhCCEEEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCcc
Confidence 44444 78999999999999999999999999999998532 1 0 1347899999999988543221 2
Q ss_pred HHHHHHHHHHHHcCcEEecC
Q 031039 89 TTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 89 ~~l~~l~~~l~~~g~~vv~~ 108 (167)
.....+...+..+|+..+..
T Consensus 146 ~~~~~l~~~~~~~G~~~~~~ 165 (199)
T PRK01355 146 SHTNYLEGTWEFLGAKVVDS 165 (199)
T ss_pred chHHHHHHHHHhcCCCceeE
Confidence 34456667777788877653
No 23
>PRK13556 azoreductase; Provisional
Probab=99.28 E-value=3.3e-11 Score=93.71 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=61.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-----c----ccCCCCCeEEEEEccCCCCC-C----HHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW-----R----TQQLAGKPAGMFYSTGSQGG-G----QETTALTA 94 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~-----~----~~~l~gK~~~~f~s~g~~~g-g----~~~~l~~l 94 (167)
.+++.+||.|||++|.||+++|+.+|.|||++.... . .+.|.||++.+++++|+... + .......+
T Consensus 84 ~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l 163 (208)
T PRK13556 84 LNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYV 163 (208)
T ss_pred HHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHH
Confidence 689999999999999999999999999999997531 0 13589999999998765431 1 11234467
Q ss_pred HHHHHHcCcEEecC
Q 031039 95 ITQLVHHGMIFVPI 108 (167)
Q Consensus 95 ~~~l~~~g~~vv~~ 108 (167)
+..|...|+..+..
T Consensus 164 ~~il~~~G~~~~~~ 177 (208)
T PRK13556 164 ASMMGFFGVTNMET 177 (208)
T ss_pred HHHHHhcCCCceeE
Confidence 77777788877653
No 24
>PRK09739 hypothetical protein; Provisional
Probab=99.27 E-value=5.7e-12 Score=97.31 Aligned_cols=60 Identities=23% Similarity=0.275 Sum_probs=48.0
Q ss_pred CCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc----cccCCCCCeEEEEEccCCC
Q 031039 23 DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW----RTQQLAGKPAGMFYSTGSQ 83 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~----~~~~l~gK~~~~f~s~g~~ 83 (167)
++..+ .+++.+||+|||++|+||+++|+.+|.|||++.... ....|.||++.++.+.|+.
T Consensus 69 ~~~~~-~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~ 132 (199)
T PRK09739 69 EVHQL-YSELLEHDALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGS 132 (199)
T ss_pred HHHHH-HHHHHhCCEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCC
Confidence 33444 789999999999999999999999999999985321 1235789999888876654
No 25
>PRK13555 azoreductase; Provisional
Probab=99.20 E-value=2.7e-10 Score=88.86 Aligned_cols=78 Identities=22% Similarity=0.191 Sum_probs=58.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---------cccCCCCCeEEEEEccCCCCCCH-----HHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---------RTQQLAGKPAGMFYSTGSQGGGQ-----ETTALTA 94 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~---------~~~~l~gK~~~~f~s~g~~~gg~-----~~~l~~l 94 (167)
.+++.+||.|||++|.||+++|+.+|.|||++.... ..+.|+||++.+++++|+...+. ......+
T Consensus 84 ~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~yl 163 (208)
T PRK13555 84 LNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVNYV 163 (208)
T ss_pred HHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHHHH
Confidence 689999999999999999999999999999986431 11458999999999876643321 1122456
Q ss_pred HHHHHHcCcEEe
Q 031039 95 ITQLVHHGMIFV 106 (167)
Q Consensus 95 ~~~l~~~g~~vv 106 (167)
...|...|+.-+
T Consensus 164 ~~il~~~Gi~~v 175 (208)
T PRK13555 164 TTVLGFWGITNP 175 (208)
T ss_pred HHHHHhcCCCce
Confidence 666666676544
No 26
>PRK09271 flavodoxin; Provisional
Probab=99.16 E-value=5.6e-11 Score=88.93 Aligned_cols=111 Identities=8% Similarity=-0.011 Sum_probs=75.1
Q ss_pred cCCCCCCCCCCCChhHHhhCCEEEEeccccCCCc-hHHHHHHHHHhcCcccccCCCCCeEEEEEcc--CCCCCCHHHHHH
Q 031039 16 MSAPPKSDVPIITPNELAEADGFVFGFPTRFGMM-AAQFKAFLDATGGLWRTQQLAGKPAGMFYST--GSQGGGQETTAL 92 (167)
Q Consensus 16 ~~~~~~~d~~~~~~~~l~~aD~iIigsPtY~~~~-~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~--g~~~gg~~~~l~ 92 (167)
+++++..+++++ ..++.++|+||||||||+++. +..++.|++.+. ....++|++++|+++ +|.+.....+..
T Consensus 34 ~~~~~~~~~~~~-~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~----~~~~~~k~~avfgsgd~~~~~~~f~~a~~ 108 (160)
T PRK09271 34 WVETDVQTLAEY-PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELA----ETIGKPPNVAVFGTGETQWGEEYYCGAVH 108 (160)
T ss_pred EEeccccccccc-ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHH----HHhccCCeEEEEecCCCCcCccHHHHHHH
Confidence 344555666665 667889999999999997555 557999999983 233578999999997 443112234556
Q ss_pred HHHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCH-HHHHHHHHHHHHHHHHHH
Q 031039 93 TAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTE-LELEQAFHQGKHIAGIAK 161 (167)
Q Consensus 93 ~l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-e~l~~a~~lG~~la~~~~ 161 (167)
.+...|... + +.+.+ +..|++ ++++.++++++++++.++
T Consensus 109 ~~~~~l~~~-~----~~l~~-------------------------~~~p~~~~d~~~~~~~~~~~~~~~~ 148 (160)
T PRK09271 109 RMARFFGSS-Y----PRLKI-------------------------EQMPHGERDAAAIDNWTDKVLALCK 148 (160)
T ss_pred HHHHHHhcc-C----Cceee-------------------------ecCCccchhHHHHHHHHHHHHHHhh
Confidence 666665421 1 22221 234554 468999999999998763
No 27
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.16 E-value=3.1e-10 Score=87.37 Aligned_cols=80 Identities=28% Similarity=0.275 Sum_probs=61.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc---c--------cccCCCCCeEEEEEccCCCC---------C-CH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL---W--------RTQQLAGKPAGMFYSTGSQG---------G-GQ 87 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~---~--------~~~~l~gK~~~~f~s~g~~~---------g-g~ 87 (167)
++++.+||.|||++|+||+++|+.+|.|+||+... + ....|+||++.+++++|... + ..
T Consensus 73 ~~~l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~ 152 (199)
T PF02525_consen 73 IEELLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSM 152 (199)
T ss_dssp HHHHHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHH
T ss_pred HHHHHHcCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCCh
Confidence 48999999999999999999999999999998421 1 13578999999999988651 0 12
Q ss_pred HHHHHHHHHHHHHcCcEEecC
Q 031039 88 ETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 88 ~~~l~~l~~~l~~~g~~vv~~ 108 (167)
...+..+...+..+||..+..
T Consensus 153 ~~~~~~~~~~~~~~G~~~~~~ 173 (199)
T PF02525_consen 153 DHLLPYLRGILKFCGIKDVES 173 (199)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhHHHHHHHHHhCCCceeeE
Confidence 344555677778899999864
No 28
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.12 E-value=7.7e-10 Score=84.72 Aligned_cols=80 Identities=23% Similarity=0.156 Sum_probs=59.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc-cc----ccCCCCCeEEEEEccCCCCC-----CHH-HHH----HH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-WR----TQQLAGKPAGMFYSTGSQGG-----GQE-TTA----LT 93 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~-~~----~~~l~gK~~~~f~s~g~~~g-----g~~-~~l----~~ 93 (167)
.+++.+||.|||.+|.||+++|+.+|.|+|+.... |. ...|+||++.++.|.|++.. |.. .++ ..
T Consensus 56 q~~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p 135 (184)
T PRK04930 56 QALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRP 135 (184)
T ss_pred HHHHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHH
Confidence 78999999999999999999999999999998642 21 13589999999888765321 111 123 33
Q ss_pred HHHHHHHcCcEEecC
Q 031039 94 AITQLVHHGMIFVPI 108 (167)
Q Consensus 94 l~~~l~~~g~~vv~~ 108 (167)
+...+..+||.++++
T Consensus 136 ~~~~~~~~Gm~~~~~ 150 (184)
T PRK04930 136 FELTAAMCRMHWLSP 150 (184)
T ss_pred HHHHHHHcCCeEcCc
Confidence 344556789999864
No 29
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.11 E-value=4.1e-10 Score=86.57 Aligned_cols=80 Identities=24% Similarity=0.152 Sum_probs=65.8
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---------cccCCCCCeEEEEEccCCCCCCH----HHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---------RTQQLAGKPAGMFYSTGSQGGGQ----ETTALTAI 95 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~---------~~~~l~gK~~~~f~s~g~~~gg~----~~~l~~l~ 95 (167)
++++..||.+||++|.||+++|+++|+|+|++.... ..+.+.||++.++.+.|+.+++. .....+|+
T Consensus 82 ~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~YLr 161 (202)
T COG1182 82 LEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYLR 161 (202)
T ss_pred HHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHHHH
Confidence 789999999999999999999999999999996432 13578999999999988776653 45667788
Q ss_pred HHHHHcCcEEecC
Q 031039 96 TQLVHHGMIFVPI 108 (167)
Q Consensus 96 ~~l~~~g~~vv~~ 108 (167)
..|...|+.-+..
T Consensus 162 ~ilgF~Gitd~~~ 174 (202)
T COG1182 162 TILGFLGITDVEF 174 (202)
T ss_pred HHhhhcCCCcceE
Confidence 8888888876543
No 30
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.11 E-value=3.1e-10 Score=86.84 Aligned_cols=76 Identities=24% Similarity=0.359 Sum_probs=65.4
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+++.+||++||+||.|++++++.+|+.||.+.. ..+.+|++++++++++.. +.......++..+..++|.++..
T Consensus 62 ~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~~----~~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 62 REAIAAADGLIIATPEYNGSYPGALKNAIDWLSR----EALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred HHHHHhCCEEEEECCccCCCCCHHHHHHHHhCCH----hHhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 5799999999999999999999999999999953 368999999999887654 44566778888888999999876
Q ss_pred c
Q 031039 109 G 109 (167)
Q Consensus 109 ~ 109 (167)
+
T Consensus 137 ~ 137 (184)
T COG0431 137 G 137 (184)
T ss_pred c
Confidence 4
No 31
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.07 E-value=6.8e-10 Score=84.48 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=58.8
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc-cc----ccCCCCCeEEEEEccCCCC-----CCH---HHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-WR----TQQLAGKPAGMFYSTGSQG-----GGQ---ETTALTAI 95 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~-~~----~~~l~gK~~~~f~s~g~~~-----gg~---~~~l~~l~ 95 (167)
.+.+.+||.|||..|.||+++|+.+|.|+|+.... |. ...|+||++.++.|.|+.. ++. ...+..+.
T Consensus 50 q~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~ 129 (176)
T PRK00871 50 QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQ 129 (176)
T ss_pred HHHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHH
Confidence 78999999999999999999999999999998632 11 2358999997777766531 111 12234455
Q ss_pred HHHHHcCcEEecC
Q 031039 96 TQLVHHGMIFVPI 108 (167)
Q Consensus 96 ~~l~~~g~~vv~~ 108 (167)
..+..+||..+++
T Consensus 130 ~~~~~~G~~~l~~ 142 (176)
T PRK00871 130 ATALYCGLNWLPP 142 (176)
T ss_pred HHHHHcCCeEcce
Confidence 5556789998865
No 32
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.00 E-value=4.2e-09 Score=79.29 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=64.1
Q ss_pred CCCCCChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCC-CC-CHHHHHHHHHHHHH
Q 031039 23 DVPIITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALTAITQLV 99 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~g-g~~~~l~~l~~~l~ 99 (167)
++.+....++.++|.||||+||| .+.++..++.|++.+. ...++||++++|++++.. .+ +...++..+.+.|.
T Consensus 33 ~~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~----~~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~ 108 (167)
T TIGR01752 33 NIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLE----ELDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIK 108 (167)
T ss_pred EcccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhh----cCCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHH
Confidence 33444456899999999999999 5778889999999883 346899999999987532 12 33456778888888
Q ss_pred HcCcEEecCc
Q 031039 100 HHGMIFVPIG 109 (167)
Q Consensus 100 ~~g~~vv~~~ 109 (167)
..|+++++..
T Consensus 109 ~~G~~~ig~~ 118 (167)
T TIGR01752 109 ARGAKVVGFW 118 (167)
T ss_pred HcCCeEEcee
Confidence 9999999864
No 33
>PRK12359 flavodoxin FldB; Provisional
Probab=98.98 E-value=1.9e-08 Score=76.27 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=68.8
Q ss_pred CCCCCChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCC-CCC-HHHHHHHHHHHHH
Q 031039 23 DVPIITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GGG-QETTALTAITQLV 99 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~gg-~~~~l~~l~~~l~ 99 (167)
++.+...+++.++|.||||+||| .+.++..+..|++.+ ....|+||++++||++++. ++. ...++..+.+.+.
T Consensus 34 ~i~~~~~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l----~~~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~ 109 (172)
T PRK12359 34 NLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQL----DDLNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLA 109 (172)
T ss_pred EcccCChhHHccCCEEEEEecccCCCcCcHHHHHHHHHH----hhCCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHH
Confidence 44555577899999999999998 677899999999988 3457999999999987753 222 2456677888888
Q ss_pred HcCcEEecCccccCCCc
Q 031039 100 HHGMIFVPIGYTFGAGM 116 (167)
Q Consensus 100 ~~g~~vv~~~~~~~~~~ 116 (167)
..|.++++..-..++.+
T Consensus 110 ~~Ga~ivG~~~~~gY~f 126 (172)
T PRK12359 110 PKGVKFVGYWPTEGYEF 126 (172)
T ss_pred hCCCeEEeeEeCCCccc
Confidence 88999998543444443
No 34
>PRK06934 flavodoxin; Provisional
Probab=98.93 E-value=2.3e-09 Score=84.23 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=51.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQL 98 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l 98 (167)
.+++.+||.|+||+|+||+.+++.++.|||+. +++||.+..|+|+|++ +...+++.|...+
T Consensus 124 ~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggs--g~g~s~~~i~~l~ 184 (221)
T PRK06934 124 IQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGS--RFSDSLREIKRLQ 184 (221)
T ss_pred HHhHHhCCEEEEEcchhhccccHHHHHHHHhc-------CCCCCEEEEEEecCCC--CccchHHHHHHHc
Confidence 47999999999999999999999999999987 7899999999998754 3345566776654
No 35
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.81 E-value=7.3e-09 Score=77.37 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=45.7
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQL 98 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l 98 (167)
..++.+||.|+||+|+|++.+++.+..||++. +++||.++.|+|+|+. +...++..|...+
T Consensus 68 ~~d~~~YD~I~lG~PvW~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs--~~~~~~~~l~~~~ 128 (156)
T PF12682_consen 68 IPDLSDYDTIFLGTPVWWGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGS--GFGNSLEDLKKLC 128 (156)
T ss_dssp -S-GGG-SEEEEEEEEETTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS----CHHHHHHHHHH-
T ss_pred ccCcccCCEEEEechHHcCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCC--ChhHHHHHHHHHC
Confidence 45889999999999999999999999999976 6899999999998764 3345566776554
No 36
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=98.75 E-value=6.9e-08 Score=70.52 Aligned_cols=65 Identities=17% Similarity=0.096 Sum_probs=48.7
Q ss_pred hhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCC--CHHHHHHHHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG--GQETTALTAITQLVH 100 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g--g~~~~l~~l~~~l~~ 100 (167)
..++.++|.|||||||| ++.++..++.|++.+. .++|.+++|++++...+ ....+++.+.+.|..
T Consensus 45 ~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~ 112 (140)
T TIGR01754 45 PLDPENYDLVFLGTWTWERGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGS 112 (140)
T ss_pred cCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcC
Confidence 34677899999999998 5667789999999982 27899999999853222 233566777777643
No 37
>PRK07116 flavodoxin; Provisional
Probab=98.74 E-value=3.4e-08 Score=73.83 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=48.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQ 97 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~ 97 (167)
..++.++|.||||+|+|++.+++.++.|++++ .+.||++++|+++|+.+.+ .+...+...
T Consensus 71 ~~~l~~~D~Iiig~Pv~~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~~g--~~~~~~~~~ 130 (160)
T PRK07116 71 IENIAEYDVIFLGFPIWWYVAPRIINTFLESY-------DFSGKTVIPFATSGGSGIG--NAEKELKKS 130 (160)
T ss_pred HhhHHhCCEEEEECChhccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCCcC--cHHHHHHHH
Confidence 45788999999999999999999999999976 5789999999997765322 233455544
No 38
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=98.72 E-value=7.1e-08 Score=74.20 Aligned_cols=55 Identities=29% Similarity=0.301 Sum_probs=47.6
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc----cc-----cCCCCCeEEEEEccCCC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW----RT-----QQLAGKPAGMFYSTGSQ 83 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~----~~-----~~l~gK~~~~f~s~g~~ 83 (167)
.+++.+||.|||.-|.||+++|+.+|.||||..... .. +.|.||.+.+++|.|.+
T Consensus 62 ~e~l~~AD~ivlqfPlwW~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~ 125 (189)
T COG2249 62 QEKLLWADVIVLQFPLWWYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAP 125 (189)
T ss_pred HHHHHhcceEEEEcCchhccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCC
Confidence 889999999999999999999999999999986432 11 46999999999998763
No 39
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=98.69 E-value=5.5e-08 Score=72.12 Aligned_cols=69 Identities=30% Similarity=0.266 Sum_probs=53.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEE
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIF 105 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~v 105 (167)
-.++..+|.|+|.||-||++.++.+|+.+|+++. .+.|||+.+++.+| .+||. +..+++.......|.+
T Consensus 81 ~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~lyh-----eW~gKPalivSyGG-hGGg~--c~~qL~~v~~fLkm~v 149 (199)
T KOG4530|consen 81 RQKILEADSIVFVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALIVSYGG-HGGGR--CQYQLRQVGVFLKMHV 149 (199)
T ss_pred HHHHhhcceEEEecccccCCCchHHHHHHHHhhh-----hhcCCceEEEEecC-CCCch--HHHHHHHHHhhheeee
Confidence 3589999999999999999999999999999964 57899998777555 44443 3335665555566664
No 40
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.57 E-value=3.1e-08 Score=72.64 Aligned_cols=51 Identities=24% Similarity=0.496 Sum_probs=45.7
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG 84 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~ 84 (167)
..++.++|.||||+|+|.+.+++.++.|+++. ...|++|++++|+++++..
T Consensus 38 ~~~~~~yD~vi~gspiy~g~~~~~~~~fi~~~-----~~~l~~k~v~~f~~~~~~~ 88 (143)
T PF12724_consen 38 EPDLSDYDAVIFGSPIYAGRIPGEMREFIKKN-----KDNLKNKKVALFSVGGSSP 88 (143)
T ss_pred ccccccCCEEEEEEEEECCcCCHHHHHHHHHH-----HHHHcCCcEEEEEEeCCCC
Confidence 56889999999999999999999999999987 2468999999999988854
No 41
>PRK09004 FMN-binding protein MioC; Provisional
Probab=98.56 E-value=7.2e-07 Score=65.86 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=65.7
Q ss_pred hhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
.+++.++|.+||++||| .|.++...+.|++.+.. ....|+|+++++||.+.+.+.........+.+.|...|++.+.
T Consensus 41 ~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~--~~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 118 (146)
T PRK09004 41 LDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQE--QKPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIG 118 (146)
T ss_pred HHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHh--cCCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEee
Confidence 67899999999999999 79999999999998843 1246899999999998776544445667888888999999987
Q ss_pred Ccc
Q 031039 108 IGY 110 (167)
Q Consensus 108 ~~~ 110 (167)
+..
T Consensus 119 ~~~ 121 (146)
T PRK09004 119 ETL 121 (146)
T ss_pred ccE
Confidence 653
No 42
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=98.46 E-value=2.7e-07 Score=67.05 Aligned_cols=83 Identities=25% Similarity=0.183 Sum_probs=61.3
Q ss_pred hhHHhhCCEEEEeccccCCC-chHHHHHHHHHhcCcc----cccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCc
Q 031039 29 PNELAEADGFVFGFPTRFGM-MAAQFKAFLDATGGLW----RTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGM 103 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~-~~~~~k~flDrl~~~~----~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~ 103 (167)
.+++.+++.+||++|||+.+ ++..++.+++++...+ ....+++|.+++|+.+++..++.......+...|...|+
T Consensus 40 ~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~ 119 (143)
T PF00258_consen 40 PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGA 119 (143)
T ss_dssp HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTE
T ss_pred hhhhhhhceeeEeecccCCCcchhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCC
Confidence 66999999999999999854 5545444444443222 234689999999998877655544567789999999999
Q ss_pred EEecCccc
Q 031039 104 IFVPIGYT 111 (167)
Q Consensus 104 ~vv~~~~~ 111 (167)
..+.+...
T Consensus 120 ~~~~~~~~ 127 (143)
T PF00258_consen 120 KRVGPLLE 127 (143)
T ss_dssp EEESSSEE
T ss_pred EEEECcEE
Confidence 99987554
No 43
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=98.42 E-value=2.5e-07 Score=70.37 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=42.7
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
..++.+||.||||+|+|++.+++.++.|+++. ...|++|++++|+++.
T Consensus 41 ~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~-----~~~l~~K~v~~F~v~l 88 (177)
T PRK11104 41 EPDLSDYDRVVIGASIRYGHFHSALYKFVKKH-----ATQLNQMPSAFFSVNL 88 (177)
T ss_pred ccCHHHCCEEEEECccccCCcCHHHHHHHHHH-----HHHhCCCeEEEEEech
Confidence 34788999999999999999999999999986 2478999999999874
No 44
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.27 E-value=9.6e-06 Score=60.85 Aligned_cols=43 Identities=28% Similarity=0.425 Sum_probs=40.1
Q ss_pred HhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCC
Q 031039 32 LAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ 83 (167)
Q Consensus 32 l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~ 83 (167)
+.++|.|++|+++|.+.+...++.||.++ +||.+++|+|.|..
T Consensus 37 ~~~yD~i~lG~w~d~G~~d~~~~~fl~~l---------~~KkV~lF~T~G~~ 79 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKGTPDKDMKEFLKKL---------KGKKVALFGTAGAG 79 (160)
T ss_pred CCCCCEEEEEcCccCCCCCHHHHHHHHHc---------cCCeEEEEEecCCC
Confidence 88999999999999999999999999986 78999999998864
No 45
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=98.18 E-value=7e-06 Score=60.67 Aligned_cols=104 Identities=19% Similarity=0.084 Sum_probs=71.1
Q ss_pred HHhhCCEEEEeccccCCCchH-HHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCC-HHHHHHHHHHHHHHcCcEEecC
Q 031039 31 ELAEADGFVFGFPTRFGMMAA-QFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG-QETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 31 ~l~~aD~iIigsPtY~~~~~~-~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg-~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
++.++|.+++|||||..+-.+ .+..|++.+.. ..+++|++++|+++.+.... .......+...+...|...++.
T Consensus 45 ~~~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~ 120 (151)
T COG0716 45 LLESYDELLLGTPTWGAGELPDDWYDFIEELEP----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGI 120 (151)
T ss_pred hhccCCEEEEEeCCCCCCcCCccHHHHHHHhcc----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCcccccc
Confidence 446999999999999755554 99999999943 57899999999995554333 3455667777777777533322
Q ss_pred ccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031039 109 GYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 159 (167)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~ 159 (167)
.-..+. .....++++..++++.+.+++...
T Consensus 121 ~~~~~~---------------------~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 121 LETLGY---------------------IFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred ccccce---------------------eccCCCCCccHHHHHHHHHHHHhh
Confidence 111000 001247788899999999887653
No 46
>PRK08105 flavodoxin; Provisional
Probab=98.16 E-value=1.9e-05 Score=58.45 Aligned_cols=77 Identities=10% Similarity=-0.065 Sum_probs=61.0
Q ss_pred HhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecCcc
Q 031039 32 LAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 110 (167)
Q Consensus 32 l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~~~ 110 (167)
..++|.+||++||| .|.++..++.|++.+... ...|+|+.+++||.++............+.+.|...|++.+.+..
T Consensus 46 ~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~ 123 (149)
T PRK08105 46 PYQDELVLVVTSTTGQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERL 123 (149)
T ss_pred cccCCeEEEEECCCCCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccE
Confidence 35579999999999 789999999999998531 237899999999997754433345667788888899999987643
No 47
>PRK05723 flavodoxin; Provisional
Probab=97.86 E-value=0.00029 Score=52.32 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=63.9
Q ss_pred CChhHHhhC--CEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCC-CHHHHHHHHHHHHHHcC
Q 031039 27 ITPNELAEA--DGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG-GQETTALTAITQLVHHG 102 (167)
Q Consensus 27 ~~~~~l~~a--D~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g-g~~~~l~~l~~~l~~~g 102 (167)
.+..++.++ |.|||++||| .|.++.....|++.+... ....|+|+.+++|+.+...++ ........+.+.|...|
T Consensus 38 ~~~~~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~-~~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lG 116 (151)
T PRK05723 38 ASLQDLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQ-LPAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELG 116 (151)
T ss_pred CCHhHHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhc-CccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCC
Confidence 345666766 9999999999 488999999999998431 112799999999999776553 34567778888999999
Q ss_pred cEEecCcc
Q 031039 103 MIFVPIGY 110 (167)
Q Consensus 103 ~~vv~~~~ 110 (167)
.+-+.+..
T Consensus 117 A~rv~~~~ 124 (151)
T PRK05723 117 VREVQPML 124 (151)
T ss_pred CcEeeccE
Confidence 88876543
No 48
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=97.59 E-value=0.00061 Score=61.02 Aligned_cols=86 Identities=9% Similarity=-0.077 Sum_probs=69.0
Q ss_pred CCCCCCChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHH
Q 031039 22 SDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH 100 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~ 100 (167)
.++++.+.+++.+++.+||.++|| .|.++..++.|++.+... ....|.|+.+++||.+++.+.........+.+.|..
T Consensus 96 ~~~~d~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~-~~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~ 174 (600)
T PRK10953 96 VNAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAE 174 (600)
T ss_pred echHhCCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhC-cCcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHH
Confidence 345555678899999999999999 799999999999988432 124689999999999887654445667788889999
Q ss_pred cCcEEecC
Q 031039 101 HGMIFVPI 108 (167)
Q Consensus 101 ~g~~vv~~ 108 (167)
.|.+-+.+
T Consensus 175 lGA~rl~~ 182 (600)
T PRK10953 175 LGAERLLD 182 (600)
T ss_pred CCCeEeec
Confidence 99888754
No 49
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=97.40 E-value=0.0014 Score=58.69 Aligned_cols=87 Identities=11% Similarity=-0.080 Sum_probs=68.6
Q ss_pred CCCCCCChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHH
Q 031039 22 SDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH 100 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~ 100 (167)
.++++...+++.+++.+||.++|| .|.++..++.|++.+... ....|+|+.+++||.+++...........+.+.|..
T Consensus 93 ~~~~d~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~-~~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~ 171 (597)
T TIGR01931 93 SSADDYKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSK-KAPKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEE 171 (597)
T ss_pred echHHCCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhC-CCcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHH
Confidence 455566678899999999999998 699999999999988432 124689999999998877654445666788888889
Q ss_pred cCcEEecCc
Q 031039 101 HGMIFVPIG 109 (167)
Q Consensus 101 ~g~~vv~~~ 109 (167)
.|...+.+.
T Consensus 172 lGa~ri~~~ 180 (597)
T TIGR01931 172 LGGKRLLPR 180 (597)
T ss_pred cCCeEeecc
Confidence 998887643
No 50
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=96.99 E-value=0.012 Score=42.44 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=40.0
Q ss_pred HHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCC-HHHHHHHHHHHH
Q 031039 31 ELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG-QETTALTAITQL 98 (167)
Q Consensus 31 ~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg-~~~~l~~l~~~l 98 (167)
++ ++|.|++ |+|| .|.+|.++..|++.+ .++..++|+|+....|. ...+...+.+.+
T Consensus 33 ~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~---------~n~~~gV~gSGn~n~g~~fc~A~d~ia~~~ 91 (125)
T TIGR00333 33 HV-DQEFVLI-TYTGGFGAVPKQTISFLNKK---------HNLLRGVAASGNKVWGDNFALAGDVISRKL 91 (125)
T ss_pred hc-CCCEEEE-ecCCCCCcCCHHHHHHHHhh---------hhcEEEEEEcCCCchHHHHHHHHHHHHHHh
Confidence 44 8999999 9999 466999999999987 12889999986543222 234455555443
No 51
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=96.81 E-value=0.0009 Score=49.98 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=49.7
Q ss_pred HHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCC--HHHHHHHHHHHHHHcCc
Q 031039 31 ELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG--QETTALTAITQLVHHGM 103 (167)
Q Consensus 31 ~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg--~~~~l~~l~~~l~~~g~ 103 (167)
++.++|+||||+|+|.+.....++.|+-+- ...|..||.++|++.-..... ...+-..+..++...-+
T Consensus 44 ~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~-----~e~L~~kP~A~f~vnl~a~k~k~~~e~~~yv~kfl~~~~W 113 (175)
T COG4635 44 ALEDYDAVVIGASIRYGHFHEAVQSFVKKH-----AEALSTKPSAFFSVNLTARKEKRTPETNSYVRKFLMKSPW 113 (175)
T ss_pred ChhhCceEEEecchhhhhhHHHHHHHHHHH-----HHHHhcCCceEEEeehhhcccccCchHHHHHHHHHhcCCC
Confidence 789999999999999999999999999986 357899999999975322212 11222355666554333
No 52
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=96.81 E-value=0.0082 Score=43.70 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=55.4
Q ss_pred HHhhCCEEEEeccccCC-----CchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCC-HHHHHHHHHHHHHHcCcE
Q 031039 31 ELAEADGFVFGFPTRFG-----MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG-QETTALTAITQLVHHGMI 104 (167)
Q Consensus 31 ~l~~aD~iIigsPtY~~-----~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg-~~~~l~~l~~~l~~~g~~ 104 (167)
.+...+-++|.+|||.. .+|.+++.|++... -.....++|+++....+. ...+...+.+. .+
T Consensus 35 ~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~-------n~~~~~gV~gsGnr~~g~~f~~a~~~i~~~---~~-- 102 (134)
T PRK03600 35 RLEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEH-------NRKLLRGVIASGNRNFGDAFALAGDVISAK---CQ-- 102 (134)
T ss_pred cccCCCCEEEEEeccCCCCcCCcccHHHHHHHhccc-------cCCcEEEEEEecCchHHHHHHHHHHHHHHH---hC--
Confidence 35677899999999974 89999999998752 123467788864332111 12233333333 23
Q ss_pred EecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHH
Q 031039 105 FVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHI 156 (167)
Q Consensus 105 vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~l 156 (167)
++..+++ +..++++|.++++++.+++
T Consensus 103 -vp~l~k~-------------------------El~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 103 -VPLLYRF-------------------------ELSGTNEDVENVRKGVEEF 128 (134)
T ss_pred -CCeEEEE-------------------------ecCCCHHHHHHHHHHHHHH
Confidence 2222221 3457789999998888877
No 53
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=71.68 E-value=10 Score=33.63 Aligned_cols=87 Identities=15% Similarity=-0.044 Sum_probs=65.4
Q ss_pred CCCCCCChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcc-cccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHH
Q 031039 22 SDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLW-RTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLV 99 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~-~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~ 99 (167)
-.+++-++++|.+.+.+||-+.|- -|.++..||.|+.-+.+.. ...-|.+-.++++|-+.++..-...+...+...|.
T Consensus 35 ~s~Deyd~~~ll~~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~ 114 (574)
T KOG1159|consen 35 MSMDEYDVEKLLDERLVVFVCSTTGQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLR 114 (574)
T ss_pred eeccccCHhHhccCceEEEEEecCCCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHH
Confidence 345555678999999999888776 5999999999987774311 22357788899999887776666677778888888
Q ss_pred HcCcEEecC
Q 031039 100 HHGMIFVPI 108 (167)
Q Consensus 100 ~~g~~vv~~ 108 (167)
..|..-+.+
T Consensus 115 qLGA~~~~~ 123 (574)
T KOG1159|consen 115 QLGANSVCP 123 (574)
T ss_pred HhCcccccc
Confidence 888876654
No 54
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=67.03 E-value=5.4 Score=29.24 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=24.1
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
.+.+.+||.||++.|++. ++.+++++.+ .++.....++.+-|
T Consensus 64 ~~a~~~ad~IiiavPs~~------~~~~~~~l~~-----~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 64 EEALEDADIIIIAVPSQA------HREVLEQLAP-----YLKKGQIIISATKG 105 (157)
T ss_dssp HHHHTT-SEEEE-S-GGG------HHHHHHHHTT-----TSHTT-EEEETS-S
T ss_pred HHHhCcccEEEecccHHH------HHHHHHHHhh-----ccCCCCEEEEecCC
Confidence 356788999999999975 4677788743 33333444444444
No 55
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=64.81 E-value=78 Score=26.01 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=57.6
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF-----KAFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-----k~flDrl~--------~~~~--- 65 (167)
.++++.+....++ .-..++.++.+.+.+-...|..+|-|+...-+++ -.+..++. ..|.
T Consensus 52 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~ 131 (311)
T PRK08410 52 VIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESP 131 (311)
T ss_pred CCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCC
Confidence 3566666654333 3345566778888999999999999987654432 22222221 1232
Q ss_pred --------ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 --------TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 --------~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...|.||.++++|.+ .... .+...+..+||+++.
T Consensus 132 ~~~~~~~~~~~L~gktvGIiG~G-----~IG~---~vA~~~~~fgm~V~~ 173 (311)
T PRK08410 132 IFTHISRPLGEIKGKKWGIIGLG-----TIGK---RVAKIAQAFGAKVVY 173 (311)
T ss_pred CccccCccccccCCCEEEEECCC-----HHHH---HHHHHHhhcCCEEEE
Confidence 136899999999962 2222 445566678999885
No 56
>PRK02551 flavoprotein NrdI; Provisional
Probab=62.85 E-value=61 Score=24.08 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=27.7
Q ss_pred HhhCCEEEEecccc-CCC----------chHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 32 LAEADGFVFGFPTR-FGM----------MAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 32 l~~aD~iIigsPtY-~~~----------~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
+..-.-.|+-+||| .++ ++.++.+|+..- .......++|+|+
T Consensus 51 ~~~~~p~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~~-------~N~~~~~gVigsG 103 (154)
T PRK02551 51 FPETEPFVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAYH-------DNAKRCLGIIGSG 103 (154)
T ss_pred cccCCCEEEEEeeecCCCCCcccCccccchHHHHHHHcch-------hhhhheEEEEeec
Confidence 34446678889999 555 566777777532 2255667888874
No 57
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=59.62 E-value=7.7 Score=26.39 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=34.9
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 34 EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 34 ~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
+.||+++- ...+.+..+.+++++.. .||++.++++.+.. .. .++.+.|..+|+.+-
T Consensus 4 D~dGvl~~----g~~~ipga~e~l~~L~~-------~g~~~~~lTNns~~--s~----~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 4 DLDGVLYN----GNEPIPGAVEALDALRE-------RGKPVVFLTNNSSR--SR----EEYAKKLKKLGIPVD 59 (101)
T ss_dssp ESTTTSEE----TTEE-TTHHHHHHHHHH-------TTSEEEEEES-SSS---H----HHHHHHHHHTTTT--
T ss_pred eCccEeEe----CCCcCcCHHHHHHHHHH-------cCCCEEEEeCCCCC--CH----HHHHHHHHhcCcCCC
Confidence 45555553 44556677889999832 68999999986542 22 266677778887653
No 58
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=59.36 E-value=15 Score=26.17 Aligned_cols=42 Identities=24% Similarity=0.119 Sum_probs=25.3
Q ss_pred HhhCCEEEEeccccCCC-----chHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 32 LAEADGFVFGFPTRFGM-----MAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 32 l~~aD~iIigsPtY~~~-----~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-.+=.|+-+|||..+ ++.++..||+.-. -.....++++|+
T Consensus 35 ~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~-------N~~~l~GVigSG 81 (122)
T PF07972_consen 35 LEVDEPFVLITPTYGFGENDGGVPKQVIRFLENPD-------NRKLLRGVIGSG 81 (122)
T ss_dssp S--SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHH-------HGGGEEEEEEEE
T ss_pred ccCCCCEEEEecccCCCCCCCCCCHHHHHHHHHHH-------HHhhheeEEecC
Confidence 44455678889999644 8999999999321 122356777764
No 59
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=55.29 E-value=75 Score=27.12 Aligned_cols=78 Identities=10% Similarity=-0.004 Sum_probs=49.0
Q ss_pred CCCCCCCChhHHhhCCEEEEeccccCCCchHHHH-HHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHH
Q 031039 21 KSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK-AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLV 99 (167)
Q Consensus 21 ~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k-~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~ 99 (167)
...++.++.+.+.+....+..+|-++...-++.- ..+=.+.+. ....|.||.++++|.+ .... .+...+.
T Consensus 66 ~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~-~g~~L~gktvGIIG~G-----~IG~---~vA~~l~ 136 (378)
T PRK15438 66 TAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER-DGFSLHDRTVGIVGVG-----NVGR---RLQARLE 136 (378)
T ss_pred cccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc-CCCCcCCCEEEEECcC-----HHHH---HHHHHHH
Confidence 3455666677888888889999988766554432 111111111 1347899999999962 1111 4555667
Q ss_pred HcCcEEec
Q 031039 100 HHGMIFVP 107 (167)
Q Consensus 100 ~~g~~vv~ 107 (167)
.+||.++.
T Consensus 137 a~G~~V~~ 144 (378)
T PRK15438 137 ALGIKTLL 144 (378)
T ss_pred HCCCEEEE
Confidence 78998875
No 60
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=53.66 E-value=1.3e+02 Score=25.01 Aligned_cols=101 Identities=17% Similarity=0.082 Sum_probs=55.8
Q ss_pred hhHHhhCCEEEEeccccCCCc-hHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMM-AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~-~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
.+.++++|.+|+=+| +|.. +..+|.|++.+ +..+++++.-.. ... .+...|...|=+-++
T Consensus 136 ~EAvk~aei~I~ftP--fG~~t~~Iikki~~~i-----------pEgAII~~tCTI--pt~----~ly~~le~l~R~Dvg 196 (342)
T PRK00961 136 REAVADADIVITWLP--KGGMQPDIIEKFADDI-----------KEGAIVTHACTI--PTT----KFAKIFKDLGRDDLN 196 (342)
T ss_pred HHHhcCCCEEEEecC--CCCCchHHHHHHHhhC-----------CCCCEEeccccC--CHH----HHHHHHHHhCcccCC
Confidence 788999999999888 5665 78889999998 245667654322 111 233333332311111
Q ss_pred CccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031039 108 IGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 159 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~ 159 (167)
++.-.+ +...|.-...-.++..-++|+.+++.+|++.....
T Consensus 197 --IsS~HP---------aaVPgt~Gq~~i~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 197 --VTSYHP---------GAVPEMKGQVYIAEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred --eeccCC---------CCCCCCCCceecccccCCHHHHHHHHHHHHHhCCC
Confidence 110000 11111100000234567799999999999886543
No 61
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=53.51 E-value=25 Score=28.14 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=37.5
Q ss_pred hhHHhhCC-EEEEeccccC--CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcC
Q 031039 29 PNELAEAD-GFVFGFPTRF--GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHG 102 (167)
Q Consensus 29 ~~~l~~aD-~iIigsPtY~--~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g 102 (167)
.+++..+| +||+|+-.|. +.+++.++.=+|....++ -.||...++.|+|..+.+ ......|.+.|..+|
T Consensus 39 ~~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LY----k~gk~~~ilvSGg~~~~~-~~Ea~~M~~yLi~~G 110 (239)
T PRK10834 39 LQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAY----NSGKVNYLLLSGDNALQS-YNEPMTMRKDLIAAG 110 (239)
T ss_pred HhhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHH----HhCCCCEEEEeCCCCCCC-CCHHHHHHHHHHHcC
Confidence 34444444 5678987764 566776666666553332 245665667776643222 122234666666555
No 62
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=51.29 E-value=85 Score=26.78 Aligned_cols=78 Identities=13% Similarity=-0.022 Sum_probs=48.5
Q ss_pred CCCCCCCChhHHhhCCEEEEeccccCCCchHHHH-HHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHH
Q 031039 21 KSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK-AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLV 99 (167)
Q Consensus 21 ~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k-~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~ 99 (167)
...++.++.+.+.+....+..+|-++...-++.- ..+=.+.+. ....+.||.++++|.+ .... .+...+.
T Consensus 66 ~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-~g~~l~gktvGIIG~G-----~IG~---~va~~l~ 136 (381)
T PRK00257 66 TIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-EGVDLAERTYGVVGAG-----HVGG---RLVRVLR 136 (381)
T ss_pred CccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-cCCCcCcCEEEEECCC-----HHHH---HHHHHHH
Confidence 3455556677888888888889988766554431 111112111 2347899999999962 1111 4555666
Q ss_pred HcCcEEec
Q 031039 100 HHGMIFVP 107 (167)
Q Consensus 100 ~~g~~vv~ 107 (167)
.+||.++.
T Consensus 137 a~G~~V~~ 144 (381)
T PRK00257 137 GLGWKVLV 144 (381)
T ss_pred HCCCEEEE
Confidence 78988864
No 63
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=49.46 E-value=1.1e+02 Score=22.96 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=33.0
Q ss_pred CCCCCeEEEEEccCCCCC-CHHHHHHHHHHHHHHcCcEEecCcc
Q 031039 68 QLAGKPAGMFYSTGSQGG-GQETTALTAITQLVHHGMIFVPIGY 110 (167)
Q Consensus 68 ~l~gK~~~~f~s~g~~~g-g~~~~l~~l~~~l~~~g~~vv~~~~ 110 (167)
.++||+..++-+++--+- .+-..++.+.+.+...|+.|++.|.
T Consensus 22 ~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPc 65 (162)
T COG0386 22 DYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPC 65 (162)
T ss_pred HhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEeccc
Confidence 579999999988754321 3446788888899999999998763
No 64
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=49.32 E-value=94 Score=25.44 Aligned_cols=66 Identities=17% Similarity=0.076 Sum_probs=43.2
Q ss_pred ChhHHhh---CCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcE
Q 031039 28 TPNELAE---ADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 28 ~~~~l~~---aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
+++++.+ -|..|+..| ...+...++++.. +|=+.+++.+.|.. +...+.+.+.....|+.
T Consensus 54 sv~dlp~~~~~Dlavi~vp------a~~v~~~l~e~~~-------~Gvk~avIis~Gf~----e~~~~~l~~~a~~~gir 116 (286)
T TIGR01019 54 SVKEAVEETGANASVIFVP------APFAADAIFEAID-------AGIELIVCITEGIP----VHDMLKVKRYMEESGTR 116 (286)
T ss_pred CHHHHhhccCCCEEEEecC------HHHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCE
Confidence 4666666 499999998 3455566666621 45456666665542 22235677788899999
Q ss_pred EecCcc
Q 031039 105 FVPIGY 110 (167)
Q Consensus 105 vv~~~~ 110 (167)
++++..
T Consensus 117 ilGPNc 122 (286)
T TIGR01019 117 LIGPNC 122 (286)
T ss_pred EECCCC
Confidence 999853
No 65
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=47.64 E-value=92 Score=22.90 Aligned_cols=63 Identities=11% Similarity=-0.075 Sum_probs=39.0
Q ss_pred CCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHH
Q 031039 68 QLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELE 147 (167)
Q Consensus 68 ~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~ 147 (167)
.|+||++.++|--.+.. |. .+.+-+...|.+++=. .+.||- .+. .+.+|-|.++
T Consensus 2 ~l~gkKviiiGdRDGiP-gp-----Aie~c~~~~gaevvfs-~TeCFV---------cta----------agaMDLEnQ~ 55 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIP-GP-----AIEECVKTAGAEVVFS-STECFV---------CTA----------AGAMDLENQQ 55 (150)
T ss_pred ccCCcEEEEEecCCCCC-cH-----HHHHHHHhcCceEEEE-eeeEEE---------ecc----------cccccHHHHH
Confidence 47999999999754432 22 4555566678887733 222221 111 2458888888
Q ss_pred HHHHHHHHH
Q 031039 148 QAFHQGKHI 156 (167)
Q Consensus 148 ~a~~lG~~l 156 (167)
+.+++.++.
T Consensus 56 rvk~~aEk~ 64 (150)
T PF04723_consen 56 RVKDLAEKY 64 (150)
T ss_pred HHHHHHHhc
Confidence 888877654
No 66
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=44.72 E-value=83 Score=22.52 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=44.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.++|++||....-...-...++.|+..+.. ...++.++.++++--..........+.....+...++.++.
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 145 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ----HSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFME 145 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEE
Confidence 4466788999998777665556777888887732 22357788888874321111111223444455556766653
No 67
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=44.17 E-value=39 Score=24.80 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=26.4
Q ss_pred hhCCEEEEec-cccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 33 AEADGFVFGF-PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 33 ~~aD~iIigs-PtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
.++|.|++.. +.+.......++.|+.+.. -++|+++.++++
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 100 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQAL-------KQGKPVAAICGA 100 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHH-------HcCCEEEEEChH
Confidence 6889877654 3333335577888888873 256777777654
No 68
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=43.07 E-value=86 Score=21.91 Aligned_cols=75 Identities=11% Similarity=0.029 Sum_probs=42.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..-+..+|++|+....-...-...+..|++.+.. ....+.+..++++--..........+.........++.++.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~----~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e 141 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELRE----YADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFE 141 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEE
Confidence 4566779999998777654445566777777632 11257888888874322111111122334444556766553
No 69
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=42.77 E-value=1.3e+02 Score=22.01 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=33.9
Q ss_pred CCCCCCCCC-hhHHhhCCEEEEeccccCCC-----chHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 20 PKSDVPIIT-PNELAEADGFVFGFPTRFGM-----MAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 20 ~~~d~~~~~-~~~l~~aD~iIigsPtY~~~-----~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
+..+++... .+++.=-+-.|+-+|||.++ ++.++-.||..= .-..+.-++++|+
T Consensus 24 ~~~~I~~~~~~~~~~v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~~-------~Nr~~~rGViaSG 83 (141)
T COG1780 24 PAVRIPLNREEDPIEVDEPYVLITPTYGGGGTVGAVPKQVIRFLNNE-------HNRALCRGVIASG 83 (141)
T ss_pred CceecccccccCCccCCCCeEEEeccccCCCccCccCHHHHHHhccc-------cchhheEEEEecC
Confidence 444555442 23355567789999999755 788888887532 2234456777764
No 70
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=41.65 E-value=2.1e+02 Score=23.85 Aligned_cols=92 Identities=22% Similarity=0.259 Sum_probs=55.0
Q ss_pred CCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc----
Q 031039 8 LPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR---- 65 (167)
Q Consensus 8 ~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~---- 65 (167)
.+++.+....++ .-..++.++.+...+.-.+|.-+|..+...-++ +-.+..++. ..|.
T Consensus 56 v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~ 135 (324)
T COG0111 56 VTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAF 135 (324)
T ss_pred CCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccccc
Confidence 455555544433 335666666667777778888899888554433 222222221 1232
Q ss_pred -ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 -TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 -~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...|.||.++++|.+ ...+ .+...+..+||.++.
T Consensus 136 ~g~el~gkTvGIiG~G-----~IG~---~va~~l~afgm~v~~ 170 (324)
T COG0111 136 RGTELAGKTVGIIGLG-----RIGR---AVAKRLKAFGMKVIG 170 (324)
T ss_pred ccccccCCEEEEECCC-----HHHH---HHHHHHHhCCCeEEE
Confidence 236789999999962 2221 455677788999986
No 71
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=41.53 E-value=1.3e+02 Score=24.08 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=39.5
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHH---HHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEE
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFL---DATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIF 105 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~fl---Drl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~v 105 (167)
.+.+.++|.||++.|... .++..+ +.+.. ...+|+.+. -.| .. . ..+.+.+.+.+...|..+
T Consensus 47 ~~~~~~advVil~vp~~~-----~~~~v~~g~~~l~~----~~~~g~~vi-d~s--t~--~-p~~~~~~~~~~~~~g~~~ 111 (288)
T TIGR01692 47 AEAAEGADRVITMLPAGQ-----HVISVYSGDEGILP----KVAKGSLLI-DCS--TI--D-PDSARKLAELAAAHGAVF 111 (288)
T ss_pred HHHHhcCCEEEEeCCChH-----HHHHHHcCcchHhh----cCCCCCEEE-ECC--CC--C-HHHHHHHHHHHHHcCCcE
Confidence 456788999999999842 344444 33311 112344332 222 11 2 234456777777889999
Q ss_pred ecCccc
Q 031039 106 VPIGYT 111 (167)
Q Consensus 106 v~~~~~ 111 (167)
++.|+.
T Consensus 112 vdaPv~ 117 (288)
T TIGR01692 112 MDAPVS 117 (288)
T ss_pred EECCCC
Confidence 987765
No 72
>PRK06932 glycerate dehydrogenase; Provisional
Probab=40.78 E-value=2.1e+02 Score=23.59 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=55.9
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHHH-----HHHHHh--------cCcccc--
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK-----AFLDAT--------GGLWRT-- 66 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k-----~flDrl--------~~~~~~-- 66 (167)
.++++.+....++ .-..++.++.+.+.+....|..+|.|+...-+++- .+..++ ...|..
T Consensus 54 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~ 133 (314)
T PRK06932 54 LFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCK 133 (314)
T ss_pred CCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCc
Confidence 3566666654333 23455666677888888888889999866554431 111111 122421
Q ss_pred ---------cCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 67 ---------QQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 67 ---------~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..|.||.++++|.+ .... .+...+..+||.++.
T Consensus 134 ~~~~~~~~~~~l~gktvgIiG~G-----~IG~---~va~~l~~fg~~V~~ 175 (314)
T PRK06932 134 QFCYFDYPITDVRGSTLGVFGKG-----CLGT---EVGRLAQALGMKVLY 175 (314)
T ss_pred cccccCCcccccCCCEEEEECCC-----HHHH---HHHHHHhcCCCEEEE
Confidence 36899999999962 2222 445566778998874
No 73
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=40.48 E-value=2.2e+02 Score=23.78 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=25.8
Q ss_pred hhHHhhCCEEEEeccccCCCc-hHHHHHHHHHh
Q 031039 29 PNELAEADGFVFGFPTRFGMM-AAQFKAFLDAT 60 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~-~~~~k~flDrl 60 (167)
.+.++++|.+|+=+| +|.. +..+|.|++.+
T Consensus 134 ~EAv~~aei~I~ftP--fG~~q~~Iikkii~~l 164 (340)
T TIGR01723 134 REAVEDADIIITWLP--KGNKQPDIIKKFIDDI 164 (340)
T ss_pred HHHhcCCCEEEEEcC--CCCCchHHHHHHHhhC
Confidence 788999999999888 5664 78889999998
No 74
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=40.47 E-value=1.5e+02 Score=24.28 Aligned_cols=66 Identities=17% Similarity=0.042 Sum_probs=41.8
Q ss_pred ChhHHhh---CCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcE
Q 031039 28 TPNELAE---ADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 28 ~~~~l~~---aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
+++++.+ -|..|+..| ...+...++++. . +|-+.+++.|+|.. .+ ..+.+.+.....||.
T Consensus 56 sv~dlp~~~~~DlAvi~vp------~~~v~~~l~e~~------~-~gvk~avI~s~Gf~---~~-~~~~l~~~a~~~gir 118 (291)
T PRK05678 56 TVAEAVEATGANASVIYVP------PPFAADAILEAI------D-AGIDLIVCITEGIP---VL-DMLEVKAYLERKKTR 118 (291)
T ss_pred CHHHHhhccCCCEEEEEcC------HHHHHHHHHHHH------H-CCCCEEEEECCCCC---HH-HHHHHHHHHHHcCCE
Confidence 3566666 599999999 344555555652 1 44455556555532 11 123677778889999
Q ss_pred EecCcc
Q 031039 105 FVPIGY 110 (167)
Q Consensus 105 vv~~~~ 110 (167)
++++..
T Consensus 119 vlGPNc 124 (291)
T PRK05678 119 LIGPNC 124 (291)
T ss_pred EECCCC
Confidence 999863
No 75
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=40.24 E-value=62 Score=25.72 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=36.4
Q ss_pred hhHH-hhCCEEEEeccccCCC--chHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCC-CCH----HHHHHHHHHHHHH
Q 031039 29 PNEL-AEADGFVFGFPTRFGM--MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG-GGQ----ETTALTAITQLVH 100 (167)
Q Consensus 29 ~~~l-~~aD~iIigsPtY~~~--~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~-gg~----~~~l~~l~~~l~~ 100 (167)
.+.| .++|.+||+.|.--.. --..++.|++ +|-++.++....... .+. ......+...|..
T Consensus 191 ~~~IP~~~d~Lvi~~P~~~ls~~e~~~l~~yl~-----------~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~ 259 (271)
T PF09822_consen 191 NEEIPDDADVLVIAGPKTDLSEEELYALDQYLM-----------NGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEE 259 (271)
T ss_pred ccccCCCCCEEEEECCCCCCCHHHHHHHHHHHH-----------cCCeEEEEECCcccccccccccccccccCHHHHHHH
Confidence 3456 8899999999996322 2244444444 333444444322110 000 0012257777888
Q ss_pred cCcEEec
Q 031039 101 HGMIFVP 107 (167)
Q Consensus 101 ~g~~vv~ 107 (167)
+|+.+-.
T Consensus 260 ~Gi~~~~ 266 (271)
T PF09822_consen 260 YGIRINP 266 (271)
T ss_pred cCCEeCC
Confidence 9988753
No 76
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=37.68 E-value=2.2e+02 Score=24.64 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=40.9
Q ss_pred hhHHh-hCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCH--HHHHHHHHHHHHHcCcEE
Q 031039 29 PNELA-EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQ--ETTALTAITQLVHHGMIF 105 (167)
Q Consensus 29 ~~~l~-~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~--~~~l~~l~~~l~~~g~~v 105 (167)
++++. .-|..|+..| +..+...++++.. .|-+.+++.+.|....+. ....+.+.+.....|+.+
T Consensus 58 l~~lp~~~Dlavi~vp------~~~~~~~l~e~~~-------~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girv 124 (447)
T TIGR02717 58 VLEIPDPVDLAVIVVP------AKYVPQVVEECGE-------KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRL 124 (447)
T ss_pred HHHCCCCCCEEEEecC------HHHHHHHHHHHHh-------cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEE
Confidence 34443 3499999998 4556666667632 343455555555432221 122356777888899999
Q ss_pred ecCc
Q 031039 106 VPIG 109 (167)
Q Consensus 106 v~~~ 109 (167)
+++.
T Consensus 125 lGPn 128 (447)
T TIGR02717 125 LGPN 128 (447)
T ss_pred EecC
Confidence 9975
No 77
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=37.27 E-value=1e+02 Score=23.11 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=47.5
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..-+.++|++||.--+-.-.-...++.|++.+.. ...+-++.++|+-..-........++....+...++.++.
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~-----~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e 146 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE-----HAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFE 146 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEE
Confidence 3445799999999888887788888999999832 2246678888874321110011233455555566776654
No 78
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=36.95 E-value=53 Score=26.71 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=26.2
Q ss_pred ccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 42 FPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 42 sPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
.|.+.......++.|+++- ..+.|+.+++++|+|
T Consensus 7 ~p~~~~d~~s~~~eFi~~q------~s~~~rrIVlVTSGG 40 (302)
T KOG2728|consen 7 VPESLDDPGSLIEEFIKLQ------ASLQGRRIVLVTSGG 40 (302)
T ss_pred CcccccchhHHHHHHHHHH------hhccCceEEEEecCC
Confidence 3667777888899999986 346777788888766
No 79
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=35.70 E-value=1.5e+02 Score=20.54 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=29.5
Q ss_pred cCCCCCeEEEEEccCCCCC-CHHHHHHHHHHHHHHcCcEEecCc
Q 031039 67 QQLAGKPAGMFYSTGSQGG-GQETTALTAITQLVHHGMIFVPIG 109 (167)
Q Consensus 67 ~~l~gK~~~~f~s~g~~~g-g~~~~l~~l~~~l~~~g~~vv~~~ 109 (167)
..++||+..++-++...+- .+-..++.+.+.+...|+.+++.|
T Consensus 17 ~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~gl~ILaFP 60 (108)
T PF00255_consen 17 SKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKDKGLEILAFP 60 (108)
T ss_dssp GGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HHcCCCEEEEEecccccCCccccHHHHHHHHHHhcCCeEEEeee
Confidence 4689999988877654321 122456667777777899999765
No 80
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=34.73 E-value=2e+02 Score=23.00 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=36.9
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHH---HHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFL---DATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~fl---Drl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
+.+.++|.||++.|.. ..++..+ +.+.. ...+|+.+ ...+.. ...+.+.+.+.+...|+.++
T Consensus 54 e~~~~~d~vi~~vp~~-----~~~~~v~~~~~~~~~----~~~~g~ii---id~st~---~~~~~~~l~~~~~~~g~~~~ 118 (296)
T PRK11559 54 AVAEQCDVIITMLPNS-----PHVKEVALGENGIIE----GAKPGTVV---IDMSSI---APLASREIAAALKAKGIEML 118 (296)
T ss_pred HHHhcCCEEEEeCCCH-----HHHHHHHcCcchHhh----cCCCCcEE---EECCCC---CHHHHHHHHHHHHHcCCcEE
Confidence 3457899999999973 3445444 22211 11233333 222221 12344466677777788888
Q ss_pred cCccc
Q 031039 107 PIGYT 111 (167)
Q Consensus 107 ~~~~~ 111 (167)
+.++.
T Consensus 119 d~pv~ 123 (296)
T PRK11559 119 DAPVS 123 (296)
T ss_pred EcCCC
Confidence 77654
No 81
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=34.45 E-value=1.3e+02 Score=26.05 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=38.5
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHH--HHHHHHHcCcEEecCc
Q 031039 33 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALT--AITQLVHHGMIFVPIG 109 (167)
Q Consensus 33 ~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~--l~~~l~~~g~~vv~~~ 109 (167)
.+.|.|.||+|-+...--..+-.+++. ...-.++++.++++. ........ +.+.+...|..++...
T Consensus 288 ~~~D~V~lGcPH~S~~El~~ia~ll~g------r~~~~~~~~~i~t~~-----~v~~~a~~~G~~~~le~~G~~iv~dT 355 (400)
T PF04412_consen 288 EKVDLVALGCPHLSLEELREIAELLEG------RKVHPNVPLWITTSR-----AVYELAERMGYVERLEKAGVQIVTDT 355 (400)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC------CCCCCCceEEEECCH-----HHHHHHHhCCHHHHHHHcCCEEEccc
Confidence 488999999998865444443333332 122245555555542 12222223 6677788999988654
No 82
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=33.87 E-value=1.8e+02 Score=21.03 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=42.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHH--hcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDA--TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDr--l~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
.+-+.++|.|++..|. ..+++..++. +. ....+|+.+.-.+|. .......+.+.+...|..++
T Consensus 52 ~e~~~~~dvvi~~v~~-----~~~v~~v~~~~~i~----~~l~~g~iiid~sT~------~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 52 AEAAEQADVVILCVPD-----DDAVEAVLFGENIL----AGLRPGKIIIDMSTI------SPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp HHHHHHBSEEEE-SSS-----HHHHHHHHHCTTHG----GGS-TTEEEEE-SS--------HHHHHHHHHHHHHTTEEEE
T ss_pred hhHhhcccceEeeccc-----chhhhhhhhhhHHh----hccccceEEEecCCc------chhhhhhhhhhhhhccceee
Confidence 4556788999998886 4567777776 42 122355555444442 22345578888888999999
Q ss_pred cCccc
Q 031039 107 PIGYT 111 (167)
Q Consensus 107 ~~~~~ 111 (167)
+.++.
T Consensus 117 dapV~ 121 (163)
T PF03446_consen 117 DAPVS 121 (163)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 98765
No 83
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=33.43 E-value=93 Score=23.79 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=21.7
Q ss_pred CeEEEEEccC--CCCCCHHHHHHHHHHHHHHcCcE
Q 031039 72 KPAGMFYSTG--SQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 72 K~~~~f~s~g--~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
|.++++|+-| ...||.++.++++...+...|+.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~ 36 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGID 36 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCce
Confidence 4667777765 33567777777777777655544
No 84
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=33.36 E-value=48 Score=27.04 Aligned_cols=46 Identities=17% Similarity=-0.049 Sum_probs=28.6
Q ss_pred hhHHhhCCEEEEecc-ccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 29 PNELAEADGFVFGFP-TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 29 ~~~l~~aD~iIigsP-tY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
.+++.++|.||+... .......+.+..|+.+.. -.+|.++.++++.
T Consensus 70 ~~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~g~ 116 (322)
T PRK09393 70 LELLDRADTIVIPGWRGPDAPVPEPLLEALRAAH-------ARGARLCSICSGV 116 (322)
T ss_pred ccccCCCCEEEECCCCcccccCCHHHHHHHHHHH-------HcCCEEEEEcHHH
Confidence 345678999998442 112233567777777652 2677777777653
No 85
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=33.32 E-value=46 Score=24.24 Aligned_cols=17 Identities=35% Similarity=0.315 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031039 146 LEQAFHQGKHIAGIAKK 162 (167)
Q Consensus 146 l~~a~~lG~~la~~~~~ 162 (167)
-..+.++|+|||+++|.
T Consensus 108 EADa~EFGERiaELAKi 124 (151)
T PF06554_consen 108 EADAQEFGERIAELAKI 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 35688999999999863
No 86
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=33.16 E-value=41 Score=24.05 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=27.0
Q ss_pred CCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 25 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 25 ~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
..++.++|.+||+||+++=.- -=++ ..+.||++.-+++..
T Consensus 47 N~LT~edI~~Ad~VI~AaD~~---------i~~~--------~ff~gk~vi~~~~~~ 86 (122)
T COG1445 47 NRLTAEDIAAADVVILAADIE---------VDLS--------RFFAGKPVIEVSTKD 86 (122)
T ss_pred CcCCHHHHHhCCEEEEEeccc---------ccHh--------HhhcCCeEEEecHHH
Confidence 346799999999999987441 0111 123489988888754
No 87
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=33.13 E-value=2e+02 Score=24.64 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=49.1
Q ss_pred CCCCCCChhHHhhCCEEEEeccccCCCchHHH-HHHHHHhcC------------ccc-----ccCCCCCeEEEEEccCCC
Q 031039 22 SDVPIITPNELAEADGFVFGFPTRFGMMAAQF-KAFLDATGG------------LWR-----TQQLAGKPAGMFYSTGSQ 83 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-k~flDrl~~------------~~~-----~~~l~gK~~~~f~s~g~~ 83 (167)
..++.++.+...+.-.+|+-+|+|+.--.+++ -.++=.+.+ -|. .-++.||..+++|.+ -.
T Consensus 79 ~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~G-rI 157 (406)
T KOG0068|consen 79 IGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLG-RI 157 (406)
T ss_pred cCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecc-cc
Confidence 45566667778888999999999985544332 223322221 121 126789999999962 21
Q ss_pred CCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 84 GGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 84 ~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
|. +....+..+||.+|.-
T Consensus 158 --Gs-----eVA~r~k~~gm~vI~~ 175 (406)
T KOG0068|consen 158 --GS-----EVAVRAKAMGMHVIGY 175 (406)
T ss_pred --hH-----HHHHHHHhcCceEEee
Confidence 22 3444556788888863
No 88
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=32.92 E-value=80 Score=24.43 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=26.0
Q ss_pred HhhCCEEEEec---cccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEc
Q 031039 32 LAEADGFVFGF---PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 79 (167)
Q Consensus 32 l~~aD~iIigs---PtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s 79 (167)
+.++|+|+|.. |.+...-...+..|+.++.. .+|+++.+++
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~-------~~k~iaaIC~ 131 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYE-------NGKVVAAVCH 131 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHH-------cCCEEEEEcc
Confidence 45799998864 34445556777888877631 4556655554
No 89
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=32.83 E-value=25 Score=28.54 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=15.8
Q ss_pred HHhhCCEEEEeccc----cCCCchHH
Q 031039 31 ELAEADGFVFGFPT----RFGMMAAQ 52 (167)
Q Consensus 31 ~l~~aD~iIigsPt----Y~~~~~~~ 52 (167)
.=..+||+|++||| |+.+.-++
T Consensus 162 ~~~r~DGliVsTPTGSTAY~lSAGGP 187 (281)
T COG0061 162 ESFRGDGLIVSTPTGSTAYNLSAGGP 187 (281)
T ss_pred EEEecCEEEEEcCCcHHHHhhhcCCC
Confidence 34589999999999 55444443
No 90
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=32.71 E-value=1.1e+02 Score=21.74 Aligned_cols=63 Identities=24% Similarity=0.225 Sum_probs=32.8
Q ss_pred EEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCc
Q 031039 37 GFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGM 103 (167)
Q Consensus 37 ~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~ 103 (167)
.||+|.+.+.....+.++.=++....++. .|+.--++.|+|...+.....-..|.+.+...|.
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~~----~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv 65 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELYR----AGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGV 65 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCC
Confidence 47899999877666555554444433222 2333345555554332111223356666666663
No 91
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=32.57 E-value=83 Score=25.97 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 54 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 54 k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
+.|++.+.+..-.+.|.||++++|..-+.. ......+.+.+...|..+.+.
T Consensus 66 d~f~~~~~~~lv~g~L~g~~V~vV~~p~a~----~~~~~~v~~~L~~AGA~v~g~ 116 (308)
T PF11382_consen 66 DQFIAAVAPRLVAGRLTGRSVAVVTLPGAD----DEDVDAVRELLEQAGATVTGR 116 (308)
T ss_pred HHHHHHHHHHHhcCccCCCEEEEEEcCCCC----hHHHHHHHHHHHHCCCeEEEE
Confidence 445555443334578999999999974432 234557888888899988763
No 92
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=32.22 E-value=2.1e+02 Score=21.11 Aligned_cols=63 Identities=11% Similarity=-0.052 Sum_probs=37.8
Q ss_pred CCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHH
Q 031039 68 QLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELE 147 (167)
Q Consensus 68 ~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~ 147 (167)
.|+||++.++|--.+.. |. .|.+-+...|.+++=+. +-||- .+. .+.+|-|.++
T Consensus 3 ~l~gKkviiiGdRDGiP-gp-----Aie~c~k~~gaevvfs~-TECfV---------cta----------AGAMDLEnQ~ 56 (154)
T PRK13265 3 LLEGKKVIIIGDRDGIP-GP-----AIEECVKTTGAEVVFSS-TECFV---------UTA----------AGAMDLENQK 56 (154)
T ss_pred cccCcEEEEEecCCCCC-cH-----HHHHHHhccCceEEEEe-eeEEE---------eec----------ccccchHHHH
Confidence 47999999999754432 21 34444555788887432 22221 111 2457788888
Q ss_pred HHHHHHHHH
Q 031039 148 QAFHQGKHI 156 (167)
Q Consensus 148 ~a~~lG~~l 156 (167)
+.+++.+..
T Consensus 57 Rvk~~aEk~ 65 (154)
T PRK13265 57 RVKDLAEKF 65 (154)
T ss_pred HHHHHHHhc
Confidence 887776654
No 93
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=32.18 E-value=1.1e+02 Score=20.60 Aligned_cols=49 Identities=12% Similarity=-0.020 Sum_probs=34.2
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCC
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 82 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~ 82 (167)
++..+||.|||-|-+.-...-..+...+.++.... =+++++++-|....
T Consensus 32 ~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~----~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 32 DDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLK----KPGAKIVVTGCMAQ 80 (98)
T ss_pred cccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhc----CCCCEEEEEeCccc
Confidence 44578999999999988888888888777774321 14555666665443
No 94
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=31.92 E-value=1.8e+02 Score=20.66 Aligned_cols=74 Identities=5% Similarity=-0.010 Sum_probs=40.6
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
...+.++|++|+....-...-...++.|+..+.. ....+.+..++++--..........+........+++.++
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEE----HASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHH----hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 4567899999998776544444566677776622 1225677788886322111111122344444455565554
No 95
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=31.81 E-value=67 Score=23.90 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=27.0
Q ss_pred hhHHhhCCEEEEecc---cc--CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFP---TR--FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsP---tY--~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
.++..++|.|++..- .. ...-...+..|+.+.. -++|.++.++++
T Consensus 64 ~~~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 113 (195)
T cd03138 64 LADVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQH-------ANGATVAAACTG 113 (195)
T ss_pred ccccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHH-------HcCCEEEEecHH
Confidence 345678999999432 11 2334566777777662 256666666654
No 96
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=30.95 E-value=1.3e+02 Score=21.25 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=10.8
Q ss_pred hhHH-hhCCEEEE-eccc
Q 031039 29 PNEL-AEADGFVF-GFPT 44 (167)
Q Consensus 29 ~~~l-~~aD~iIi-gsPt 44 (167)
.+.+ .-||+|++ |.|.
T Consensus 46 l~Af~~GADGV~V~gC~~ 63 (124)
T PF02662_consen 46 LRAFEKGADGVLVAGCHP 63 (124)
T ss_pred HHHHHcCCCEEEEeCCCC
Confidence 4444 34999999 6664
No 97
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.97 E-value=30 Score=28.31 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=11.1
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+||||++|||
T Consensus 175 ~~~DGlIVSTPT 186 (287)
T PRK14077 175 YFGDGVIVATPA 186 (287)
T ss_pred EEcCEEEEeCCC
Confidence 579999999999
No 98
>PRK06487 glycerate dehydrogenase; Provisional
Probab=29.47 E-value=3.2e+02 Score=22.44 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=55.2
Q ss_pred CCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc----
Q 031039 8 LPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR---- 65 (167)
Q Consensus 8 ~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~---- 65 (167)
++++.+....++ .-..++.++.+.+.+....|.-+|-|+...-++ |-.+..++. ..|.
T Consensus 56 ~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~ 135 (317)
T PRK06487 56 LDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQ 135 (317)
T ss_pred CCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcc
Confidence 556666543333 234555666788888888888999988655433 222222221 1232
Q ss_pred -------ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 -------TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 -------~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...|.||.++++|.+ .... .+...+..+||.++.
T Consensus 136 ~~~~~~~~~~l~gktvgIiG~G-----~IG~---~vA~~l~~fgm~V~~ 176 (317)
T PRK06487 136 FCLLDFPIVELEGKTLGLLGHG-----ELGG---AVARLAEAFGMRVLI 176 (317)
T ss_pred cccccCcccccCCCEEEEECCC-----HHHH---HHHHHHhhCCCEEEE
Confidence 135899999999962 2222 455566778998874
No 99
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=29.11 E-value=1.6e+02 Score=22.46 Aligned_cols=47 Identities=17% Similarity=-0.001 Sum_probs=32.7
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG 84 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~ 84 (167)
...-++||.+++.-|+ ...+...++...|.+ -.-|.+..+|+....+
T Consensus 65 ~aSPRhADvLlVtG~v-T~km~~~l~~~yeqm--------PePK~VIA~G~CA~sG 111 (173)
T PRK14818 65 RASPRQADFMIVAGTL-TYKMAERARLLYDQM--------PEPKYVISMGSCSNCG 111 (173)
T ss_pred cCCcccccEEEEeCcC-ccccHHHHHHHHHhC--------CCCCEEEEeccccccC
Confidence 5677899999998776 345555566666655 3668888888765543
No 100
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=29.10 E-value=3.3e+02 Score=22.47 Aligned_cols=66 Identities=11% Similarity=-0.065 Sum_probs=39.1
Q ss_pred hhHHhh---CCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEE
Q 031039 29 PNELAE---ADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIF 105 (167)
Q Consensus 29 ~~~l~~---aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~v 105 (167)
++++.+ .|..||..|. ..+...++.+.. +|=+.+++.+.|-.-.+ ..+.+.......|+.+
T Consensus 61 v~dlp~~~~~DlAvI~vPa------~~v~~al~e~~~-------~Gvk~~vIisaGf~e~g---~~~~~~~~ar~~girv 124 (300)
T PLN00125 61 VAEAKAETKANASVIYVPP------PFAAAAILEAME-------AELDLVVCITEGIPQHD---MVRVKAALNRQSKTRL 124 (300)
T ss_pred HHHHhhccCCCEEEEecCH------HHHHHHHHHHHH-------cCCCEEEEECCCCCccc---HHHHHHHHHhhcCCEE
Confidence 555555 5999999994 444555555521 45455666665543222 1223444457799999
Q ss_pred ecCcc
Q 031039 106 VPIGY 110 (167)
Q Consensus 106 v~~~~ 110 (167)
+++..
T Consensus 125 iGPNc 129 (300)
T PLN00125 125 IGPNC 129 (300)
T ss_pred ECCCC
Confidence 99853
No 101
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=29.06 E-value=2.4e+02 Score=23.86 Aligned_cols=78 Identities=12% Similarity=-0.102 Sum_probs=48.8
Q ss_pred CCCCCCChhHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHH
Q 031039 22 SDVPIITPNELA---EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQL 98 (167)
Q Consensus 22 ~d~~~~~~~~l~---~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l 98 (167)
||+.-+ ..++. ....|.+-+|-|-++.+.-....++.+........-..+.+.++|... . .+ +.++...|
T Consensus 104 DDi~~v-~~~~~~~~~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~~-~-~d----~~el~~lL 176 (396)
T cd01979 104 MDLEGA-APRLSAEIGVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLP-D-IV----EDQLRREL 176 (396)
T ss_pred cCHHHH-HHHHhhcCCCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeCC-c-ch----HHHHHHHH
Confidence 566655 44443 567888888888877666666666666433222222345566777642 1 12 45788888
Q ss_pred HHcCcEEe
Q 031039 99 VHHGMIFV 106 (167)
Q Consensus 99 ~~~g~~vv 106 (167)
..+|+.++
T Consensus 177 ~~~Gi~v~ 184 (396)
T cd01979 177 EQLGIPVV 184 (396)
T ss_pred HHcCCeEE
Confidence 89999886
No 102
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=28.92 E-value=2.1e+02 Score=20.08 Aligned_cols=48 Identities=6% Similarity=-0.045 Sum_probs=30.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
...+.++|++|+-.-.-...-...+..|+..+.. ....++++.++++-
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~pi~vv~nK 117 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRD----HADSNIVIMLVGNK 117 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHH----hCCCCCeEEEEEEC
Confidence 3456778988887555444445666677776632 12346788888874
No 103
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.83 E-value=28 Score=28.28 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=11.3
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+||+|++|||
T Consensus 156 ~~~DGlIVsTPT 167 (271)
T PRK01185 156 FKADGVIVATPT 167 (271)
T ss_pred EEeeEEEEeCCC
Confidence 689999999999
No 104
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.69 E-value=1.8e+02 Score=24.12 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhc
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 61 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~ 61 (167)
+.+.++|.||+++|.+ .+...++++.
T Consensus 73 ~a~~~aDlVilavps~------~~~~vl~~i~ 98 (341)
T PRK12439 73 EAANCADVVVMGVPSH------GFRGVLTELA 98 (341)
T ss_pred HHHhcCCEEEEEeCHH------HHHHHHHHHH
Confidence 4578899999999965 5666677763
No 105
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.33 E-value=32 Score=28.41 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=11.7
Q ss_pred HhhCCEEEEeccc
Q 031039 32 LAEADGFVFGFPT 44 (167)
Q Consensus 32 l~~aD~iIigsPt 44 (167)
-..+||+|++|||
T Consensus 178 ~~~~DGlIVsTPT 190 (305)
T PRK02649 178 DIAADGVILSTPT 190 (305)
T ss_pred EEecCeEEEeCCC
Confidence 3689999999999
No 106
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.22 E-value=33 Score=28.35 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=11.0
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+||||++|||
T Consensus 183 ~~~DGlIVsTPT 194 (306)
T PRK03372 183 FGCDGVLVSTPT 194 (306)
T ss_pred EecCEEEEeCCC
Confidence 578999999999
No 107
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=28.22 E-value=78 Score=24.90 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=31.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 79 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s 79 (167)
..++.++|.|||.||. .++.|++++...... .+++++++++|.
T Consensus 45 l~~l~~~d~vvfTS~~-------av~~~~~~l~~~~~~-~~~~~~i~aVG~ 87 (248)
T COG1587 45 LEDLDSADWVVFTSPN-------AVRFFFEALKEQGLD-ALKNKKIAAVGE 87 (248)
T ss_pred HhccccCCEEEEECHH-------HHHHHHHHHHhhccc-ccccCeEEEEcH
Confidence 6777779999999986 567888887432211 467888888874
No 108
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=28.09 E-value=3e+02 Score=21.90 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=37.5
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+.+.++|.||++.|. ...++..+...... .....+|+ +|...+.. . ..+...+.+.+...|+.+++.
T Consensus 50 ~~~~~~aDivi~~vp~-----~~~~~~v~~~~~~~-~~~~~~g~---iivd~st~--~-~~~~~~l~~~l~~~g~~~~~~ 117 (291)
T TIGR01505 50 RQVTEQADVIFTMVPD-----SPQVEEVAFGENGI-IEGAKPGK---TLVDMSSI--S-PIESKRFAKAVKEKGIDYLDA 117 (291)
T ss_pred HHHHhcCCEEEEecCC-----HHHHHHHHcCcchH-hhcCCCCC---EEEECCCC--C-HHHHHHHHHHHHHcCCCEEec
Confidence 4567899999999996 34555554110000 00112333 33222221 2 223346777777778888886
Q ss_pred ccc
Q 031039 109 GYT 111 (167)
Q Consensus 109 ~~~ 111 (167)
++.
T Consensus 118 pv~ 120 (291)
T TIGR01505 118 PVS 120 (291)
T ss_pred CCC
Confidence 643
No 109
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.06 E-value=29 Score=28.49 Aligned_cols=12 Identities=42% Similarity=0.579 Sum_probs=11.0
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+||||++|||
T Consensus 174 ~~~DGlIVsTPT 185 (292)
T PRK01911 174 YWADGLIVATPT 185 (292)
T ss_pred EeeceeEECCCC
Confidence 469999999999
No 110
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=28.03 E-value=75 Score=25.00 Aligned_cols=41 Identities=7% Similarity=-0.117 Sum_probs=26.3
Q ss_pred HHhhCCEEEEec---cccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEE
Q 031039 31 ELAEADGFVFGF---PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 78 (167)
Q Consensus 31 ~l~~aD~iIigs---PtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~ 78 (167)
+..+||+|+|-- |.+...-...++.++.++.. .||+++.++
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~-------~gK~iaAIC 134 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYA-------NGGVVAAVC 134 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHH-------cCCEEEEEC
Confidence 467999988832 55655556777777777632 455555555
No 111
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=27.87 E-value=2.1e+02 Score=24.25 Aligned_cols=80 Identities=11% Similarity=-0.019 Sum_probs=46.6
Q ss_pred CCCCCCChhHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCcccc----cCCCCCeEEEEEccCCCCCCHHHHHHHH
Q 031039 22 SDVPIITPNELA---EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRT----QQLAGKPAGMFYSTGSQGGGQETTALTA 94 (167)
Q Consensus 22 ~d~~~~~~~~l~---~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~----~~l~gK~~~~f~s~g~~~gg~~~~l~~l 94 (167)
||+..+ .+++. ....|.+-+|-|.++...-....++.+...+.. ..-..+.+-+++...+. +. +.++
T Consensus 103 dDi~~v-~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~d----~~el 176 (410)
T cd01968 103 DDIDAV-CKTASEKFGIPVIPVHSPGFVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-GE----LWGV 176 (410)
T ss_pred cCHHHH-HHHHHHhhCCCEEEEECCCcccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-cc----HHHH
Confidence 566555 45443 467888889998877554444444443221111 11124567778765543 23 3478
Q ss_pred HHHHHHcCcEEec
Q 031039 95 ITQLVHHGMIFVP 107 (167)
Q Consensus 95 ~~~l~~~g~~vv~ 107 (167)
...|..+|+.++.
T Consensus 177 ~~lL~~~Gl~v~~ 189 (410)
T cd01968 177 KPLLEKLGIRVLA 189 (410)
T ss_pred HHHHHHcCCeEEE
Confidence 8888889988864
No 112
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=27.82 E-value=1e+02 Score=27.61 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=21.2
Q ss_pred hhHHhhCCEEEEeccccCCC--chHHHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGM--MAAQFKAFLDA 59 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~--~~~~~k~flDr 59 (167)
.+++.++|.+|++.|.--.. --..++.|+++
T Consensus 229 p~~l~d~d~LvI~~P~~~ls~~e~~~Ldqfl~~ 261 (552)
T TIGR03521 229 LADLKKFDLIVIAKPTEAFSEREKYILDQYIMN 261 (552)
T ss_pred cccccCcCEEEEeCCCccCCHHHHHHHHHHHHc
Confidence 56677999999999974332 34555666654
No 113
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.64 E-value=2.1e+02 Score=24.49 Aligned_cols=81 Identities=11% Similarity=0.004 Sum_probs=46.6
Q ss_pred CCCCCCChhHHh-------hCCEEEEeccccCCCchHHHHHHHHHhcCcccccC--CCCCeEEEEEccCCCCCCHHHHHH
Q 031039 22 SDVPIITPNELA-------EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQ--LAGKPAGMFYSTGSQGGGQETTAL 92 (167)
Q Consensus 22 ~d~~~~~~~~l~-------~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~--l~gK~~~~f~s~g~~~gg~~~~l~ 92 (167)
||+.-+ ..++. ....|.+-+|-|.++...-....+..+...+.... -+.+.+-+++.+.... + .+.
T Consensus 98 dDi~~v-~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~-~---d~~ 172 (428)
T cd01965 98 DDVAGF-IKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTP-G---DVR 172 (428)
T ss_pred CCHHHH-HHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCc-c---CHH
Confidence 566665 55654 45677788898887665554444444432111111 2344566666432222 2 245
Q ss_pred HHHHHHHHcCcEEec
Q 031039 93 TAITQLVHHGMIFVP 107 (167)
Q Consensus 93 ~l~~~l~~~g~~vv~ 107 (167)
++...|..+|+.++.
T Consensus 173 el~~lL~~~Gl~v~~ 187 (428)
T cd01965 173 EIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHHHHcCCCEEE
Confidence 888888889988875
No 114
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=27.28 E-value=2.9e+02 Score=23.55 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=46.4
Q ss_pred CCCCCCChhHHh----hCCEEEEeccccCCCc-hH----HHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHH
Q 031039 22 SDVPIITPNELA----EADGFVFGFPTRFGMM-AA----QFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTAL 92 (167)
Q Consensus 22 ~d~~~~~~~~l~----~aD~iIigsPtY~~~~-~~----~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~ 92 (167)
||+.-+ .+++. +...|.+-+|-|.+.. .. .++.+++.+........-..+.+-+++...+. +. +.
T Consensus 105 dDi~~v-~~~~~~~~~~~~vi~v~tpgf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~~-~d----~~ 178 (415)
T cd01977 105 DDIKAV-AKEVMEELPDVDIFVCNAPGFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNIQ-GD----TE 178 (415)
T ss_pred CCHHHH-HHHHHHhcCCCeEEEEeCCCcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCCc-cc----HH
Confidence 555555 44443 3668888899998742 22 23456666643211111234567777755442 22 34
Q ss_pred HHHHHHHHcCcEEec
Q 031039 93 TAITQLVHHGMIFVP 107 (167)
Q Consensus 93 ~l~~~l~~~g~~vv~ 107 (167)
++...|..+|+.++.
T Consensus 179 ei~~lL~~~Gl~v~~ 193 (415)
T cd01977 179 VLQKYFERMGIQVLS 193 (415)
T ss_pred HHHHHHHHcCCeEEE
Confidence 788888889999974
No 115
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=27.19 E-value=1.5e+02 Score=22.55 Aligned_cols=39 Identities=26% Similarity=0.148 Sum_probs=24.4
Q ss_pred CCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHh
Q 031039 22 SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 60 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl 60 (167)
++.+..+.+.|.++|+||+-+-.-..--..+.+.|.+.+
T Consensus 40 ~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v 78 (217)
T PF06283_consen 40 EDPDDLTPENLKGYDVVVFYNTGGDELTDEQRAALRDYV 78 (217)
T ss_dssp CSGGCTSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHH
T ss_pred eCcccCChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 445556677899999999987761112456677777766
No 116
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.93 E-value=36 Score=27.51 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=11.0
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+||||++|||
T Consensus 147 ~~~DGlIVsTPt 158 (264)
T PRK03501 147 FRGDGMVVSTPT 158 (264)
T ss_pred EecCEEEEeCCC
Confidence 479999999999
No 117
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.63 E-value=38 Score=27.39 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=11.2
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+||+|++|||
T Consensus 146 ~~gDGlIVsTpt 157 (265)
T PRK04885 146 FRGDGLCVSTPT 157 (265)
T ss_pred EEcCEEEEECCC
Confidence 589999999999
No 118
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=26.44 E-value=4.1e+02 Score=22.74 Aligned_cols=92 Identities=21% Similarity=0.133 Sum_probs=54.0
Q ss_pred CCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------Cccc----
Q 031039 8 LPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF-----KAFLDATG--------GLWR---- 65 (167)
Q Consensus 8 ~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-----k~flDrl~--------~~~~---- 65 (167)
++++.+....++ .-..++.++.+...+-...|.-+|-++...-+++ -.+..++. ..|.
T Consensus 65 ~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~ 144 (409)
T PRK11790 65 LTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAA 144 (409)
T ss_pred CCHHHHhhCCCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccccc
Confidence 455555543332 2245555667888888888888998876544332 11111111 1232
Q ss_pred -ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 -TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 -~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...|.||.++++|.+ .... .+...+..+||.++.
T Consensus 145 ~~~~L~gktvGIiG~G-----~IG~---~vA~~~~~fGm~V~~ 179 (409)
T PRK11790 145 GSFEVRGKTLGIVGYG-----HIGT---QLSVLAESLGMRVYF 179 (409)
T ss_pred CcccCCCCEEEEECCC-----HHHH---HHHHHHHHCCCEEEE
Confidence 246899999999962 2221 455566778999875
No 119
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.37 E-value=37 Score=27.92 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=11.0
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+||+|++|||
T Consensus 179 ~~~DGlIVsTPT 190 (296)
T PRK04539 179 QRSDGLIVSTPT 190 (296)
T ss_pred EecCeEEEECCC
Confidence 379999999999
No 120
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.27 E-value=38 Score=27.87 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=15.0
Q ss_pred hhCCEEEEeccc----cCCCchHH
Q 031039 33 AEADGFVFGFPT----RFGMMAAQ 52 (167)
Q Consensus 33 ~~aD~iIigsPt----Y~~~~~~~ 52 (167)
..+||||++||| |+.+.-++
T Consensus 177 ~~gDGlIVsTPtGSTAYslSAGGP 200 (305)
T PRK02645 177 YQGDGLIVSTPTGSTAYTMAAGGP 200 (305)
T ss_pred EecCEEEEecCCChhhhhhhcCCc
Confidence 489999999999 55544443
No 121
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=26.06 E-value=2.2e+02 Score=20.05 Aligned_cols=48 Identities=8% Similarity=0.008 Sum_probs=30.6
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
...+.++|++|+..-.-...-...+..|+..+.. ....+.+..++++-
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~----~~~~~~~~iiv~nK 116 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDR----YASENVNKLLVGNK 116 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHH----hCCCCCcEEEEEEC
Confidence 3456679999998665554445566667776622 12256788888774
No 122
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.04 E-value=39 Score=27.06 Aligned_cols=12 Identities=50% Similarity=0.564 Sum_probs=11.2
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+|++|++|||
T Consensus 144 ~~~DG~ivsTpt 155 (256)
T PRK14075 144 FFADGVVISTPT 155 (256)
T ss_pred EecCEEEEeCCC
Confidence 579999999999
No 123
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=25.89 E-value=1.3e+02 Score=22.68 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=25.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEE
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 78 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~ 78 (167)
...+.++|.|||.||. .++.|++.+...+ ...+.++++.++|
T Consensus 44 ~~~~~~~~~iiftS~~-------av~~~~~~~~~~~-~~~~~~~~~~avG 85 (239)
T cd06578 44 LADLDEYDWLIFTSPN-------AVEAFFEALEELG-LRALAGLKIAAVG 85 (239)
T ss_pred HHhcCCCCEEEEECHH-------HHHHHHHHHHhhC-CccccCCEEEEEC
Confidence 4455689999999995 4566665553211 1234555655554
No 124
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=25.88 E-value=79 Score=23.04 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=24.9
Q ss_pred HhhCCEEEEeccc---cCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEc
Q 031039 32 LAEADGFVFGFPT---RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 79 (167)
Q Consensus 32 l~~aD~iIigsPt---Y~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s 79 (167)
..++|.|++.... +.....+.+..|+.+.. -++|+++.+++
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~~ic~ 104 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQE-------SKGKLVAAICA 104 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHH-------HCCCEEEEECh
Confidence 5679999986532 11223456777777762 25667666665
No 125
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.88 E-value=37 Score=27.45 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=11.3
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+||||++|||
T Consensus 135 ~~gDGlIVsTPt 146 (259)
T PRK00561 135 YRGSGLLIGPRT 146 (259)
T ss_pred EecCEEEEeCch
Confidence 689999999999
No 126
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.83 E-value=39 Score=27.46 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=11.0
Q ss_pred hhCCEEEEeccc
Q 031039 33 AEADGFVFGFPT 44 (167)
Q Consensus 33 ~~aD~iIigsPt 44 (167)
..+||+|++|||
T Consensus 154 ~~~DGlIVsTPt 165 (272)
T PRK02231 154 QRSDGLIISTPT 165 (272)
T ss_pred EecCeEEEECCC
Confidence 379999999999
No 127
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.65 E-value=38 Score=27.78 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=11.7
Q ss_pred HhhCCEEEEeccc
Q 031039 32 LAEADGFVFGFPT 44 (167)
Q Consensus 32 l~~aD~iIigsPt 44 (167)
-..+||||++|||
T Consensus 172 ~~~~DGlivsTpt 184 (295)
T PRK01231 172 SQRSDGLIVSTPT 184 (295)
T ss_pred EEEcceEEEeCCC
Confidence 3689999999999
No 128
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=25.63 E-value=3.9e+02 Score=22.11 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=55.0
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHHH-----HHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK-----AFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k-----~flDrl~--------~~~~--- 65 (167)
.++++.+....++ .-..++.++.+.+.+....|..+|-|+....+++- ....++. ..|.
T Consensus 55 ~~~~~~l~~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~ 134 (323)
T PRK15409 55 KVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASI 134 (323)
T ss_pred CCCHHHHhhCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccC
Confidence 3566666643333 12345556678888889999999998876654432 1111110 1232
Q ss_pred -----ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHH-HcCcEEec
Q 031039 66 -----TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLV-HHGMIFVP 107 (167)
Q Consensus 66 -----~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~-~~g~~vv~ 107 (167)
...|.||.++++|.+ .... .+...+. .+||+++.
T Consensus 135 ~~~~~g~~L~gktvGIiG~G-----~IG~---~va~~l~~~fgm~V~~ 174 (323)
T PRK15409 135 GPDWFGTDVHHKTLGIVGMG-----RIGM---ALAQRAHFGFNMPILY 174 (323)
T ss_pred ccccccCCCCCCEEEEEccc-----HHHH---HHHHHHHhcCCCEEEE
Confidence 236899999999962 2222 3444555 68998874
No 129
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=25.23 E-value=1.2e+02 Score=21.50 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=32.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-+..+|++|+....-...-...++.|++.+.. ...++++.++++-
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~p~ivv~nK 113 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELRE-----YRPEIPCIVVANK 113 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEC
Confidence 4567889999997766544444556778777731 2356788888874
No 130
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=25.22 E-value=3.3e+02 Score=22.57 Aligned_cols=93 Identities=9% Similarity=0.141 Sum_probs=55.6
Q ss_pred CCCHHHHhccC--CC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------C--cc
Q 031039 7 TLPEEVLGKMS--AP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF-----KAFLDATG--------G--LW 64 (167)
Q Consensus 7 ~~~~~~~~~~~--~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-----k~flDrl~--------~--~~ 64 (167)
.++++++.++. ++ .-..++.++.+...+....|..+|.|+...-+++ -.+..++. . .|
T Consensus 56 ~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w 135 (330)
T PRK12480 56 KLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTW 135 (330)
T ss_pred CCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCccc
Confidence 46677776643 22 3345556667788888888999999886654432 22222221 1 12
Q ss_pred c----ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 65 R----TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 65 ~----~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
. ...|.||+++++|.+.. |. .+...+..+||.++.
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~I---G~-----~vA~~L~~~G~~V~~ 174 (330)
T PRK12480 136 QAEIMSKPVKNMTVAIIGTGRI---GA-----ATAKIYAGFGATITA 174 (330)
T ss_pred ccccCccccCCCEEEEECCCHH---HH-----HHHHHHHhCCCEEEE
Confidence 1 23689999999986322 21 344556678888874
No 131
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.04 E-value=42 Score=27.28 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=15.0
Q ss_pred hhCCEEEEeccc----cCCCchHH
Q 031039 33 AEADGFVFGFPT----RFGMMAAQ 52 (167)
Q Consensus 33 ~~aD~iIigsPt----Y~~~~~~~ 52 (167)
..+||||++||| |+.+.-++
T Consensus 163 ~~gDGvIvsTptGSTAY~lSaGGp 186 (277)
T PRK03708 163 VRADGLIISTPTGSTAYAMSAGGP 186 (277)
T ss_pred EecCEEEEeCCCchHHHHhhCCCc
Confidence 589999999999 55444444
No 132
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=24.85 E-value=1.2e+02 Score=24.23 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=13.8
Q ss_pred hhHHhhCCEEEEeccc
Q 031039 29 PNELAEADGFVFGFPT 44 (167)
Q Consensus 29 ~~~l~~aD~iIigsPt 44 (167)
.+++.++|.|||.||.
T Consensus 64 l~~l~~~d~iiftS~N 79 (266)
T PRK08811 64 LRQALAAPIVVFTSPA 79 (266)
T ss_pred HhhcccCCEEEEECHH
Confidence 4677799999999987
No 133
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=24.31 E-value=1.2e+02 Score=22.28 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=25.8
Q ss_pred hHHhhCCEEEEec-cccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 30 NELAEADGFVFGF-PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 30 ~~l~~aD~iIigs-PtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
++..++|.||+.. +.........+..|+.+.. -++|.++.++++
T Consensus 60 ~~~~~~D~liipgg~~~~~~~~~~~~~~l~~~~-------~~~~~i~aic~g 104 (185)
T cd03136 60 EDAPPLDYLFVVGGLGARRAVTPALLAWLRRAA-------RRGVALGGIDTG 104 (185)
T ss_pred cccCCCCEEEEeCCCCccccCCHHHHHHHHHHH-------hcCCEEEEEcHH
Confidence 3556899999832 2111344566677776652 256677666654
No 134
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=24.13 E-value=1.5e+02 Score=21.20 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=32.9
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
..+..+|++|+....-...-...++.++..+.. ...+.++++.++++--
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK~ 110 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLT---EKELRDALLLIFANKQ 110 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc---ChhhCCCCEEEEEeCc
Confidence 457899999998776554444566777777632 2245667888888753
No 135
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=24.11 E-value=1.3e+02 Score=22.87 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=25.8
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEE
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 78 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~ 78 (167)
...+.++|.|||.||. .++.|++.+... ....+.++++.++|
T Consensus 47 ~~~~~~~d~iiftS~~-------av~~~~~~~~~~-~~~~~~~~~~~avG 88 (249)
T PRK05928 47 QLAALGADWVIFTSKN-------AVEFLLSALKKK-KLKWPKNKKYAAIG 88 (249)
T ss_pred HhhCCCCCEEEEECHH-------HHHHHHHHHHhc-CcCCCCCCEEEEEC
Confidence 4678899999999986 456666655310 11234555555554
No 136
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=24.03 E-value=2.4e+02 Score=19.08 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=42.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..-+.++|++|+-.......-...++.|+..+.. ..-.+++..++++--............+......+++.++.
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~----~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKE----YAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFE 141 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEE
Confidence 4456789999998887664445566666666521 12256788877764322101111233455555555665553
No 137
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=24.02 E-value=1.3e+02 Score=21.03 Aligned_cols=48 Identities=6% Similarity=0.024 Sum_probs=32.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
...+.++|++|+-...-.......++.|+..+.. ...+.++.++++-.
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~nK~ 117 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRT-----ASKHMPGVLVGNKM 117 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEECc
Confidence 3567789999998876655555667888887632 11467888888753
No 138
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=23.98 E-value=4.4e+02 Score=23.38 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF-----KAFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-----k~flDrl~--------~~~~--- 65 (167)
.++++.+....++ .-..++.++.+...+-...|.-+|.++....++. -.+..++. ..|.
T Consensus 51 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~ 130 (525)
T TIGR01327 51 KVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKA 130 (525)
T ss_pred CcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccc
Confidence 3556666644333 2345566677888888888999998875544332 22222211 1232
Q ss_pred --ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 --TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 --~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...|.||.++++|.+ ... ..+...+..+||.++.
T Consensus 131 ~~g~~l~gktvgIiG~G-----~IG---~~vA~~l~~fG~~V~~ 166 (525)
T TIGR01327 131 FMGTELYGKTLGVIGLG-----RIG---SIVAKRAKAFGMKVLA 166 (525)
T ss_pred cCccccCCCEEEEECCC-----HHH---HHHHHHHHhCCCEEEE
Confidence 236899999999962 111 1455566778988874
No 139
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=23.97 E-value=43 Score=27.41 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=15.0
Q ss_pred hhCCEEEEeccc----cCCCchHH
Q 031039 33 AEADGFVFGFPT----RFGMMAAQ 52 (167)
Q Consensus 33 ~~aD~iIigsPt----Y~~~~~~~ 52 (167)
..+||||++||| |+.+.-++
T Consensus 174 ~~gDGlIVsTPtGSTAYslSaGGP 197 (291)
T PRK02155 174 QRSDGLIVATPTGSTAYALSAGGP 197 (291)
T ss_pred EecCeEEEECCCchhhhhhhcCCc
Confidence 589999999999 55444444
No 140
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=23.93 E-value=46 Score=26.69 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=14.4
Q ss_pred hCCEEEEeccc----cCCCchHH
Q 031039 34 EADGFVFGFPT----RFGMMAAQ 52 (167)
Q Consensus 34 ~aD~iIigsPt----Y~~~~~~~ 52 (167)
.+||||++||| |+.+.-++
T Consensus 133 ~gDGlIVSTPtGSTAY~lSAGGP 155 (246)
T PRK04761 133 VCDGVLVATPAGSTAYNLSAHGP 155 (246)
T ss_pred ecCeEEEeCCcCHHHHHhhCCCc
Confidence 69999999999 55444444
No 141
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=23.91 E-value=95 Score=21.77 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=46.0
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..+.++|++|+...+-.-.-...++.|+..+... .-.+.+..++++-...........++.......++..++.
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~----~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e 140 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKY----KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFE 140 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH----STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEE
T ss_pred cccccccccccccccccccccccccccccccccc----ccccccceeeeccccccccccchhhHHHHHHHHhCCEEEE
Confidence 4577999999998777766667788888887321 1145788888874321110111223455566677766654
No 142
>PTZ00099 rab6; Provisional
Probab=23.84 E-value=1.5e+02 Score=21.83 Aligned_cols=47 Identities=2% Similarity=-0.007 Sum_probs=31.8
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 79 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s 79 (167)
..-+..||++|+....-...-...++.|++.+.. ....+.++.++++
T Consensus 47 ~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~----~~~~~~piilVgN 93 (176)
T PTZ00099 47 PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN----ERGKDVIIALVGN 93 (176)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCeEEEEEE
Confidence 4568899999999876555445666778887632 1224566777776
No 143
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=23.71 E-value=3.3e+02 Score=22.02 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=40.7
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecCc
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 109 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~~ 109 (167)
+.+.++|.||++.|.. ..++..+..-..+ .....+||.+.-.+|. ...+.+.+.+.+...|..+++.|
T Consensus 51 ~~~~~advVi~~v~~~-----~~v~~v~~~~~g~-~~~~~~g~ivvd~sT~------~p~~~~~~~~~~~~~G~~~vdaP 118 (292)
T PRK15059 51 QVTEASDIIFIMVPDT-----PQVEEVLFGENGC-TKASLKGKTIVDMSSI------SPIETKRFARQVNELGGDYLDAP 118 (292)
T ss_pred HHHhcCCEEEEeCCCh-----HHHHHHHcCCcch-hccCCCCCEEEECCCC------CHHHHHHHHHHHHHcCCCEEEec
Confidence 4467899999999975 4555544211000 0112345544333331 12345577778888899999877
Q ss_pred cc
Q 031039 110 YT 111 (167)
Q Consensus 110 ~~ 111 (167)
+.
T Consensus 119 Vs 120 (292)
T PRK15059 119 VS 120 (292)
T ss_pred CC
Confidence 54
No 144
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=23.48 E-value=4.2e+02 Score=22.15 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.9
Q ss_pred hHHhhCCEEEEeccccC
Q 031039 30 NELAEADGFVFGFPTRF 46 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~ 46 (167)
+.+.+||.||++.|...
T Consensus 78 eal~~ADiIIlAVPs~~ 94 (342)
T TIGR03376 78 EAAKGADILVFVIPHQF 94 (342)
T ss_pred HHHhcCCEEEEECChHH
Confidence 45688999999999854
No 145
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=23.47 E-value=1.3e+02 Score=26.34 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=23.7
Q ss_pred cCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecCcc
Q 031039 67 QQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 110 (167)
Q Consensus 67 ~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~~~ 110 (167)
..|.||++++++.. . ... .+..++...||+++..+.
T Consensus 331 ~~L~GKrv~i~~g~--~--~~~----~~~~~l~ELGmevv~~g~ 366 (466)
T TIGR01282 331 PRLEGKTVMLYVGG--L--RPR----HVIGAFEDLGMEVIGTGY 366 (466)
T ss_pred HhcCCCEEEEECCC--C--cHH----HHHHHHHHCCCEEEEEee
Confidence 57899999888631 1 111 333457789999986543
No 146
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=23.21 E-value=2e+02 Score=20.64 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=30.8
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
...+.++|++|+---.-...-....+.++..+.. ...+.++|+.++++--
T Consensus 61 ~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~---~~~~~~~piliv~NK~ 110 (167)
T cd04161 61 VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ---HPRVSGKPILVLANKQ 110 (167)
T ss_pred HHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHc---CccccCCcEEEEEeCC
Confidence 3456899999996433232233445666666532 2345789999999854
No 147
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=23.08 E-value=1.2e+02 Score=23.82 Aligned_cols=25 Identities=12% Similarity=-0.101 Sum_probs=18.7
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHh
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 60 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl 60 (167)
..++.++|.|||.||. .++.|++++
T Consensus 50 l~~l~~~d~iifTS~n-------aV~~~~~~l 74 (255)
T PRK05752 50 LLELDRYCAVIVVSKP-------AARLGLELL 74 (255)
T ss_pred HhcCCCCCEEEEECHH-------HHHHHHHHH
Confidence 3567899999999986 345566665
No 148
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=22.76 E-value=4.3e+02 Score=22.21 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=14.0
Q ss_pred hhHHhh-CCEEEEeccccC
Q 031039 29 PNELAE-ADGFVFGFPTRF 46 (167)
Q Consensus 29 ~~~l~~-aD~iIigsPtY~ 46 (167)
+++..+ ||.||++.|+++
T Consensus 65 l~~a~~~ad~iv~avPs~~ 83 (329)
T COG0240 65 LAEALDGADIIVIAVPSQA 83 (329)
T ss_pred HHHHHhcCCEEEEECChHH
Confidence 455555 999999999864
No 149
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=22.35 E-value=36 Score=28.87 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=17.5
Q ss_pred CCCCChhHHhhCCEEEEeccccC
Q 031039 24 VPIITPNELAEADGFVFGFPTRF 46 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~ 46 (167)
++++ .+.+++||.+||+.|.-|
T Consensus 96 v~dl-~ea~~dADilvf~vPhQf 117 (372)
T KOG2711|consen 96 VPDL-VEAAKDADILVFVVPHQF 117 (372)
T ss_pred cchH-HHHhccCCEEEEeCChhh
Confidence 3445 788899999999999744
No 150
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.21 E-value=1.7e+02 Score=19.40 Aligned_cols=42 Identities=17% Similarity=-0.008 Sum_probs=32.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
...+.++|.||+-+=.-..++...+|..--+ .|+|+...-+.
T Consensus 43 ~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk----------~~ip~~~~~~~ 84 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSHNAMWKVKKAAKK----------YGIPIIYSRSR 84 (97)
T ss_pred HHhcCCCCEEEEEeCCcChHHHHHHHHHHHH----------cCCcEEEECCC
Confidence 6789999999999988888888888866655 45666555433
No 151
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=21.92 E-value=83 Score=24.78 Aligned_cols=29 Identities=10% Similarity=-0.237 Sum_probs=19.4
Q ss_pred HhhCCEEEEe---ccccCCCchHHHHHHHHHh
Q 031039 32 LAEADGFVFG---FPTRFGMMAAQFKAFLDAT 60 (167)
Q Consensus 32 l~~aD~iIig---sPtY~~~~~~~~k~flDrl 60 (167)
..+||+|++- .|++...-...+..++.++
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f 125 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWA 125 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHH
Confidence 4689999884 3556555566666666665
No 152
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=21.86 E-value=50 Score=28.43 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.6
Q ss_pred HHhhCCEEEEecccc
Q 031039 31 ELAEADGFVFGFPTR 45 (167)
Q Consensus 31 ~l~~aD~iIigsPtY 45 (167)
.-.++||+|++|||=
T Consensus 282 T~vq~DGliVaTPTG 296 (409)
T KOG2178|consen 282 TKVQGDGLIVATPTG 296 (409)
T ss_pred EEEecceEEEecCCc
Confidence 346899999999994
No 153
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=21.81 E-value=1.6e+02 Score=22.31 Aligned_cols=48 Identities=4% Similarity=-0.002 Sum_probs=31.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-++++|++||..-+-.-.-...++.|++.+.. ....+.++.++++=
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~----~~~~~~piilVgNK 114 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK----YASEDAELLLVGNK 114 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH----hCCCCCcEEEEEEC
Confidence 4457799999997665555555667777776622 23356777778774
No 154
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=21.64 E-value=1.9e+02 Score=20.26 Aligned_cols=52 Identities=10% Similarity=-0.091 Sum_probs=30.5
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-+.++|++|+-.......-...+..|.+.+..........+++..++++-
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNK 118 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEEC
Confidence 4456679999988766544433555556555421111123447888888874
No 155
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=21.63 E-value=1.4e+02 Score=22.33 Aligned_cols=42 Identities=7% Similarity=-0.058 Sum_probs=25.8
Q ss_pred hhCCEEEEecc---ccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccC
Q 031039 33 AEADGFVFGFP---TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 81 (167)
Q Consensus 33 ~~aD~iIigsP---tY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g 81 (167)
.++|+|++..- .....-.+.+..|+.+.. -+||+++.++++.
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G~ 109 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFH-------RSGRIVAAICAAP 109 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHH-------HCCCEEEEECHhH
Confidence 36899888432 111223345677776662 3788988888743
No 156
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=21.56 E-value=1.9e+02 Score=24.14 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=24.3
Q ss_pred cCCCCC-----eEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecCcccc
Q 031039 67 QQLAGK-----PAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTF 112 (167)
Q Consensus 67 ~~l~gK-----~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~~~~~ 112 (167)
..++.+ |..+|..++| ...+.+...|..||+-.|++
T Consensus 242 ~rl~~~~~~~vPmi~fakG~g----------~~Le~l~~tG~DVvgLDWTv 282 (359)
T KOG2872|consen 242 KRLPELGLAPVPMILFAKGSG----------GALEELAQTGYDVVGLDWTV 282 (359)
T ss_pred HhhhhhcCCCCceEEEEcCcc----------hHHHHHHhcCCcEEeecccc
Confidence 345555 8888887543 22334567899999988875
No 157
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=21.49 E-value=2.4e+02 Score=22.38 Aligned_cols=46 Identities=11% Similarity=-0.086 Sum_probs=30.1
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ 83 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~ 83 (167)
...-++||.+|+.-|+ ...|...++...|.+ -.-|.+..+|+....
T Consensus 66 ~aSPRhADvliVtG~V-T~km~~~L~rlyeqm--------PePK~VIA~GaCA~s 111 (225)
T CHL00023 66 RSSPRQADLILTAGTV-TMKMAPSLVRLYEQM--------PEPKYVIAMGACTIT 111 (225)
T ss_pred cCCcccceEEEEecCC-ccccHHHHHHHHHhc--------CCCCeEEEEcccccc
Confidence 4566789999987776 334455555555544 355788888876554
No 158
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=21.30 E-value=2.3e+02 Score=21.90 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=31.7
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG 86 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg 86 (167)
...-++||.+++.-|+ ..++...++..++.+ -+-|.+..+|+....+|.
T Consensus 62 ~asPR~ADvllVtG~V-t~km~~~l~~~y~qm--------PePK~VIA~GaCA~sGG~ 110 (189)
T PRK14813 62 RSSPRQSDLMIVAGTV-TMKMAERVVRLYEQM--------PEPRYVLSMGSCSNCGGP 110 (189)
T ss_pred cCCcccceEEEEeccC-chhhHHHHHHHHHhC--------CCCCEEEEecccccCCCC
Confidence 3445679999987776 334455555555554 356788899887655444
No 159
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=21.15 E-value=2.7e+02 Score=23.14 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=47.4
Q ss_pred CCCCCCChhHH---hhCCEEEEeccccCCCchHHHHHHHHHhcCcccc----cCCCCCeEEEEEccCCCCCCHHHHHHHH
Q 031039 22 SDVPIITPNEL---AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRT----QQLAGKPAGMFYSTGSQGGGQETTALTA 94 (167)
Q Consensus 22 ~d~~~~~~~~l---~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~----~~l~gK~~~~f~s~g~~~gg~~~~l~~l 94 (167)
||+.-+ ..++ .....+.+-+|-|.++...-....+..+...+.. ..-..+.+-+++..... . .-+.++
T Consensus 97 dDi~~v-~~~~~~~~~~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~--~--~d~~el 171 (399)
T cd00316 97 DDIEAV-AKEASKEIGIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLG--G--GDLREL 171 (399)
T ss_pred cCHHHH-HHHHHHhhCCceEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCc--h--hhHHHH
Confidence 455554 4443 4678999999998876665544444444322221 22344556677764322 1 234578
Q ss_pred HHHHHHcCcEEec
Q 031039 95 ITQLVHHGMIFVP 107 (167)
Q Consensus 95 ~~~l~~~g~~vv~ 107 (167)
...|..+|++++.
T Consensus 172 ~~ll~~~G~~v~~ 184 (399)
T cd00316 172 KRLLEEMGIRVNA 184 (399)
T ss_pred HHHHHHcCCcEEE
Confidence 8888889988864
No 160
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=21.06 E-value=4.1e+02 Score=22.75 Aligned_cols=78 Identities=10% Similarity=-0.069 Sum_probs=44.9
Q ss_pred CCCCCCChhHHh----hCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHH
Q 031039 22 SDVPIITPNELA----EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQ 97 (167)
Q Consensus 22 ~d~~~~~~~~l~----~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~ 97 (167)
||+.-+ .+++. ....|.+-||-|.++...-...++..+........-..+.+.++|... .++ ..++...
T Consensus 114 DDi~~v-~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~--~~d----~~el~~l 186 (427)
T PRK02842 114 LDLEGL-AERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLA--DVV----EDQLTLE 186 (427)
T ss_pred CCHHHH-HHHhhcccCCCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCC--cch----HHHHHHH
Confidence 566665 55554 345677778888776444445555554322222222344567777642 122 2478888
Q ss_pred HHHcCcEEe
Q 031039 98 LVHHGMIFV 106 (167)
Q Consensus 98 l~~~g~~vv 106 (167)
|..+|+.++
T Consensus 187 L~~~Gi~v~ 195 (427)
T PRK02842 187 FKKLGIGVV 195 (427)
T ss_pred HHHcCCeeE
Confidence 888998875
No 161
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=20.90 E-value=4.7e+02 Score=22.56 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=46.7
Q ss_pred CCCCCCChhHHh---hCCEEEEeccccCCCc-----hHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHH
Q 031039 22 SDVPIITPNELA---EADGFVFGFPTRFGMM-----AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALT 93 (167)
Q Consensus 22 ~d~~~~~~~~l~---~aD~iIigsPtY~~~~-----~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~ 93 (167)
||+.-+ .+++. ....|.+-||-|.+.. ...++.+++.+........-..+.+-+++...+. +. +.+
T Consensus 135 dDi~~v-~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~-~d----~~e 208 (443)
T TIGR01862 135 DDIEAV-AKEVSKEIGKDVVAVNCPGFAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIG-GD----AWV 208 (443)
T ss_pred cCHHHH-HHHHHHhcCCCEEEEecCCccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCc-cc----HHH
Confidence 566555 45443 2578888888887632 2335556666532111111234567777765543 23 347
Q ss_pred HHHHHHHcCcEEec
Q 031039 94 AITQLVHHGMIFVP 107 (167)
Q Consensus 94 l~~~l~~~g~~vv~ 107 (167)
+...|..+|+.++.
T Consensus 209 l~~lL~~~Gl~v~~ 222 (443)
T TIGR01862 209 MRIYLEEMGIQVVA 222 (443)
T ss_pred HHHHHHHcCCeEEE
Confidence 88888889998864
No 162
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=20.87 E-value=4.4e+02 Score=23.50 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=47.3
Q ss_pred CCCCCCChhHHh----hCCEEEEeccccCC-Cch----HHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHH
Q 031039 22 SDVPIITPNELA----EADGFVFGFPTRFG-MMA----AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTAL 92 (167)
Q Consensus 22 ~d~~~~~~~~l~----~aD~iIigsPtY~~-~~~----~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~ 92 (167)
||+.-+ ..+.. ....|-+-||-|.+ ..+ ...+.+++++........-....+-+++.+-+. |.. .
T Consensus 145 DDi~av-~k~~~~~~~~~pVi~v~tpGF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~-gD~----~ 218 (513)
T TIGR01861 145 DDIAAI-AKEVMEEMPDVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQ-GDQ----E 218 (513)
T ss_pred CCHHHH-HHHHHHhcCCCcEEEEeCCCccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCc-cCH----H
Confidence 566665 44433 35688889999877 333 257788887743111011112335577765443 343 3
Q ss_pred HHHHHHHHcCcEEec
Q 031039 93 TAITQLVHHGMIFVP 107 (167)
Q Consensus 93 ~l~~~l~~~g~~vv~ 107 (167)
.+...|..+|+.++.
T Consensus 219 eik~lLe~~Gl~v~~ 233 (513)
T TIGR01861 219 VMVDYFQRMGIQVLS 233 (513)
T ss_pred HHHHHHHHCCCeEEE
Confidence 788888889999984
No 163
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=20.74 E-value=1e+02 Score=21.86 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=25.6
Q ss_pred hhHH--hhCCEEEEeccc---cCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNEL--AEADGFVFGFPT---RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l--~~aD~iIigsPt---Y~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
.+++ .++|+||+..-. ....-.+.+..|+.+.. -++|+++.++++
T Consensus 53 ~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~~ic~g 102 (163)
T cd03135 53 LSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFN-------AKGKLIAAICAA 102 (163)
T ss_pred HhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHH-------HcCCEEEEEchh
Confidence 4454 689999885422 11112355666776652 256777766653
No 164
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=20.53 E-value=2.3e+02 Score=20.24 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=29.8
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-+..+|++|+..-.-...-....+.+++++.. ...++++.++++-
T Consensus 62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~-----~~~~~piilv~NK 108 (164)
T cd04162 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQ-----HPPDLPLVVLANK 108 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHh-----CCCCCcEEEEEeC
Confidence 3468899999976544332223455666776621 2267889888874
No 165
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=20.50 E-value=3.2e+02 Score=19.24 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=39.7
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...++++|++|+..-.-...-...++.|++.+.. ....+.++.++++--.-........+.....+...++.++.
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~----~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN----LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLE 143 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEE
Confidence 4467889999998665554444556677766521 12245677777764221111111122444444555665543
No 166
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=20.47 E-value=2.9e+02 Score=19.14 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=30.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-+..+|++|+..-.-...-...++.|++.+. ....+.+..++++-
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~-----~~~~~~p~iiv~nK 115 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVE-----AECGDIPMVLVQTK 115 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH-----HhCCCCCEEEEEEC
Confidence 456778999888766555444455666666652 22356777777764
No 167
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=20.30 E-value=1.8e+02 Score=20.44 Aligned_cols=48 Identities=4% Similarity=0.008 Sum_probs=29.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
...+.++|++++..-.-...-...++.|++.+.. ....+.++.++++=
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~----~~~~~~p~ivv~nK 117 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEK----YGASNVVLLLIGNK 117 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHH----hCCCCCcEEEEEEC
Confidence 3456678999987555444444566778877732 12245667777763
No 168
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.27 E-value=2.4e+02 Score=20.67 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=24.7
Q ss_pred CCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 70 AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 70 ~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
+-|.++++|.+..+..... ....+|..+|.++++
T Consensus 15 ~~K~IAvVG~S~~P~r~sy----~V~kyL~~~GY~ViP 48 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSY----RVAKYLQQKGYRVIP 48 (140)
T ss_pred hCceEEEEecCCCCCccHH----HHHHHHHHCCCEEEe
Confidence 5789999998765533332 556778889998885
No 169
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=20.25 E-value=4.1e+02 Score=22.90 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=43.4
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHHhcC------cc-c-----------ccCC-CCC-eEEEEEccCCCCC--CHHHHH
Q 031039 34 EADGFVFGFPTRFGMMAAQFKAFLDATGG------LW-R-----------TQQL-AGK-PAGMFYSTGSQGG--GQETTA 91 (167)
Q Consensus 34 ~aD~iIigsPtY~~~~~~~~k~flDrl~~------~~-~-----------~~~l-~gK-~~~~f~s~g~~~g--g~~~~l 91 (167)
.=|+||+-||+|. ++-+++..-.+ +. . ...+ .++ +..++++=-.+.| +.+..+
T Consensus 106 ~gd~Vvi~tPvY~-----PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL 180 (388)
T COG1168 106 PGDGVVIQTPVYP-----PFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEEL 180 (388)
T ss_pred CCCeeEecCCCch-----HHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHH
Confidence 4599999999983 33333333221 10 0 0112 233 5566666444444 556678
Q ss_pred HHHHHHHHHcCcEEecCc
Q 031039 92 LTAITQLVHHGMIFVPIG 109 (167)
Q Consensus 92 ~~l~~~l~~~g~~vv~~~ 109 (167)
..|.+.+..+|..||+.-
T Consensus 181 ~~i~elc~kh~v~VISDE 198 (388)
T COG1168 181 RKIAELCLRHGVRVISDE 198 (388)
T ss_pred HHHHHHHHHcCCEEEeec
Confidence 889999999999999853
No 170
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=20.13 E-value=1.5e+02 Score=22.71 Aligned_cols=46 Identities=15% Similarity=-0.019 Sum_probs=29.9
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCC
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG 84 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~ 84 (167)
..-++||.+++.-|+ +..++..+.++. ...-+-|.+..+|+....|
T Consensus 69 ~sPR~aDillVeG~V-----T~~m~~~l~~~~----e~~p~pk~VIAvGaCA~~G 114 (180)
T PRK14820 69 FSPRQADMLMVMGTI-----AKKMAPVLKQVY----LQMAEPRWVVAVGACASSG 114 (180)
T ss_pred CCCccceEEEEEecC-----CcccHHHHHHHH----HhcCCCCeEEEEecccccC
Confidence 456889999987766 333455566652 2234667888888876653
Done!