Query 031039
Match_columns 167
No_of_seqs 172 out of 1571
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b6i_A Flavoprotein WRBA; flav 99.9 9.4E-23 3.2E-27 154.6 15.5 136 28-165 62-198 (198)
2 2a5l_A Trp repressor binding p 99.9 2.4E-22 8.1E-27 152.6 14.6 135 28-165 65-200 (200)
3 3d7n_A Flavodoxin, WRBA-like p 99.9 3.7E-23 1.3E-27 157.6 9.7 143 23-165 43-189 (193)
4 1ydg_A Trp repressor binding p 99.9 8.7E-22 3E-26 151.2 13.0 131 28-165 72-202 (211)
5 2zki_A 199AA long hypothetical 99.9 1E-21 3.5E-26 149.3 13.1 132 29-165 65-196 (199)
6 2ark_A Flavodoxin; FMN, struct 99.8 1.4E-18 4.7E-23 131.5 13.5 127 24-165 42-170 (188)
7 3fni_A Putative diflavin flavo 99.8 9.2E-20 3.2E-24 135.2 5.0 111 16-162 38-149 (159)
8 3hly_A Flavodoxin-like domain; 99.8 1.5E-19 5.3E-24 134.0 6.0 112 16-163 34-145 (161)
9 2q62_A ARSH; alpha/beta, flavo 99.7 5.8E-17 2E-21 128.2 13.7 120 29-165 93-213 (247)
10 2fzv_A Putative arsenical resi 99.7 1.7E-16 5.8E-21 127.5 13.5 120 29-165 118-238 (279)
11 5nul_A Flavodoxin; electron tr 99.7 1.2E-16 4E-21 114.8 8.7 102 23-158 34-137 (138)
12 1sqs_A Conserved hypothetical 99.7 5.5E-17 1.9E-21 127.2 7.4 112 22-162 68-179 (242)
13 4hs4_A Chromate reductase; tri 99.7 1.9E-15 6.5E-20 115.8 14.7 121 29-166 68-190 (199)
14 3fvw_A Putative NAD(P)H-depend 99.7 3.8E-16 1.3E-20 118.8 9.6 119 29-164 62-186 (192)
15 1rtt_A Conserved hypothetical 99.6 1.7E-15 5.7E-20 114.7 12.4 118 29-163 67-185 (193)
16 3svl_A Protein YIEF; E. coli C 99.6 2E-15 6.9E-20 115.1 12.1 119 29-164 67-187 (193)
17 3u7r_A NADPH-dependent FMN red 99.6 5.2E-15 1.8E-19 112.7 14.1 119 29-163 62-181 (190)
18 1rli_A Trp repressor binding p 99.6 1.5E-17 5E-22 124.5 -0.1 115 23-158 61-183 (184)
19 3gfs_A FMN-dependent NADPH-azo 99.6 8.1E-16 2.8E-20 114.8 9.3 111 29-161 58-168 (174)
20 4dik_A Flavoprotein; TM0755, e 99.6 3.6E-16 1.2E-20 131.8 7.0 107 16-156 302-408 (410)
21 2ohh_A Type A flavoprotein FPR 99.6 9.5E-17 3.3E-21 133.4 2.1 102 29-161 302-403 (404)
22 2vzf_A NADH-dependent FMN redu 99.6 1.1E-15 3.6E-20 116.4 7.6 115 29-164 64-179 (197)
23 3k1y_A Oxidoreductase; structu 99.6 7.3E-16 2.5E-20 117.5 6.5 115 22-163 74-189 (191)
24 2q9u_A A-type flavoprotein; fl 99.6 3.9E-15 1.3E-19 124.3 10.9 104 29-165 302-408 (414)
25 2fz5_A Flavodoxin; alpha/beta 99.6 3.3E-15 1.1E-19 106.5 8.7 99 24-158 36-136 (137)
26 3s2y_A Chromate reductase; ura 99.3 1.8E-16 6.1E-21 121.5 0.0 126 22-165 62-189 (199)
27 3f6r_A Flavodoxin; FMN binding 99.6 4.4E-15 1.5E-19 107.7 6.5 102 28-159 42-147 (148)
28 2hpv_A FMN-dependent NADH-azor 99.5 3.4E-14 1.2E-18 108.4 10.3 109 29-158 89-206 (208)
29 1ycg_A Nitric oxide reductase; 99.5 9.6E-16 3.3E-20 127.0 1.5 109 19-161 288-397 (398)
30 1e5d_A Rubredoxin\:oxygen oxid 99.5 4.4E-15 1.5E-19 123.2 4.2 110 19-162 289-398 (402)
31 1t5b_A Acyl carrier protein ph 99.5 7.9E-14 2.7E-18 105.3 9.7 80 29-108 81-171 (201)
32 1t0i_A YLR011WP; FMN binding p 99.5 7.5E-14 2.6E-18 105.2 9.4 71 29-107 79-149 (191)
33 1f4p_A Flavodoxin; electron tr 99.5 2.8E-14 9.4E-19 103.2 5.5 101 29-159 42-146 (147)
34 3f2v_A General stress protein 99.5 2.5E-13 8.5E-18 103.6 9.2 87 22-109 47-148 (192)
35 3ha2_A NADPH-quinone reductase 99.5 1.2E-13 4.1E-18 104.0 7.1 87 21-108 39-139 (177)
36 2amj_A Modulator of drug activ 99.4 8.1E-13 2.8E-17 101.3 9.5 86 22-108 59-176 (204)
37 3r6w_A FMN-dependent NADH-azor 99.4 1.3E-12 4.5E-17 100.2 10.4 80 29-108 82-181 (212)
38 3u7i_A FMN-dependent NADH-azor 99.4 1.7E-12 5.9E-17 100.9 10.9 109 29-160 89-213 (223)
39 3p0r_A Azoreductase; structura 99.4 1E-12 3.6E-17 101.2 8.1 80 29-108 87-180 (211)
40 3lcm_A SMU.1420, putative oxid 99.4 1.4E-12 4.8E-17 99.3 8.4 78 29-108 68-160 (196)
41 3l9w_A Glutathione-regulated p 99.3 4.1E-12 1.4E-16 107.0 8.7 118 21-162 280-410 (413)
42 1czn_A Flavodoxin; FMN binding 99.3 1.6E-11 5.3E-16 90.7 10.3 125 28-160 40-167 (169)
43 1obo_A Flavodoxin; electron tr 99.3 4E-11 1.4E-15 88.5 11.5 127 26-160 38-167 (169)
44 3rpe_A MDAB, modulator of drug 99.2 2.5E-11 8.5E-16 94.2 8.4 86 22-108 72-189 (218)
45 1d4a_A DT-diaphorase, quinone 99.2 1.8E-11 6.3E-16 97.7 7.8 80 29-108 88-186 (273)
46 1yob_A Flavodoxin 2, flavodoxi 99.2 9.5E-11 3.2E-15 87.6 10.0 128 24-159 36-174 (179)
47 1ykg_A SIR-FP, sulfite reducta 99.2 4.2E-11 1.5E-15 88.7 7.9 107 26-162 48-155 (167)
48 3tem_A Ribosyldihydronicotinam 99.2 8E-11 2.7E-15 91.8 9.6 55 29-83 87-150 (228)
49 1ag9_A Flavodoxin; electron tr 99.2 2.1E-10 7.2E-15 85.5 11.4 127 27-161 38-168 (175)
50 2fcr_A Flavodoxin; electron tr 99.2 1.3E-10 4.4E-15 86.4 10.2 125 28-160 39-171 (173)
51 3klb_A Putative flavoprotein; 99.2 1E-10 3.4E-15 86.4 9.2 67 29-106 73-139 (162)
52 2wc1_A Flavodoxin; electron tr 99.1 1.3E-10 4.5E-15 87.0 7.5 129 25-161 38-177 (182)
53 2hna_A Protein MIOC, flavodoxi 99.0 2.2E-11 7.6E-16 88.1 0.5 101 29-160 41-146 (147)
54 4ici_A Putative flavoprotein; 99.0 5E-10 1.7E-14 83.5 7.9 67 29-106 82-148 (171)
55 4gi5_A Quinone reductase; prot 99.0 3.1E-10 1.1E-14 91.1 5.8 55 29-83 107-178 (280)
56 3edo_A Flavoprotein, putative 99.0 2.1E-10 7.4E-15 83.6 4.2 68 29-107 71-138 (151)
57 1bvy_F Protein (cytochrome P45 98.9 6.1E-10 2.1E-14 84.6 3.8 103 30-161 63-167 (191)
58 2bmv_A Flavodoxin; electron tr 98.9 1.7E-09 5.7E-14 79.5 4.8 124 26-159 36-162 (164)
59 2xod_A NRDI protein, NRDI; fla 98.6 1.4E-07 4.9E-12 65.8 6.6 85 34-158 32-118 (119)
60 2bpo_A CPR, P450R, NADPH-cytoc 98.5 4.6E-07 1.6E-11 80.6 9.3 113 23-162 86-200 (682)
61 3hr4_A Nitric oxide synthase, 98.5 4.6E-07 1.6E-11 70.1 7.9 85 24-110 76-161 (219)
62 3qe2_A CPR, P450R, NADPH--cyto 97.9 2E-05 6.8E-10 69.3 7.0 73 34-108 70-143 (618)
63 1tll_A Nitric-oxide synthase, 97.8 5.3E-05 1.8E-09 67.5 8.7 111 25-162 48-199 (688)
64 1rlj_A NRDI protein; flavoprot 97.2 0.001 3.4E-08 47.6 6.4 88 32-159 41-130 (139)
65 3n3a_C Protein NRDI; ribonucle 97.1 0.00026 8.9E-09 51.6 2.8 90 31-158 55-150 (153)
66 3efe_A THIJ/PFPI family protei 49.7 11 0.00036 27.9 2.7 45 29-80 67-114 (212)
67 3kb6_A D-lactate dehydrogenase 46.9 62 0.0021 25.7 7.1 95 5-107 51-169 (334)
68 2b0j_A 5,10-methenyltetrahydro 40.5 83 0.0028 25.2 6.6 96 29-157 136-235 (358)
69 3oet_A Erythronate-4-phosphate 39.9 50 0.0017 27.0 5.5 74 21-107 69-147 (381)
70 3qha_A Putative oxidoreductase 39.7 1E+02 0.0036 23.5 7.2 67 29-111 65-132 (296)
71 1oth_A Protein (ornithine tran 37.4 64 0.0022 25.7 5.7 65 35-106 102-183 (321)
72 2efe_B Small GTP-binding prote 35.4 73 0.0025 21.4 5.2 75 29-107 79-153 (181)
73 2yv2_A Succinyl-COA synthetase 35.3 83 0.0028 24.5 6.0 64 29-109 62-129 (297)
74 2nu8_A Succinyl-COA ligase [AD 35.0 85 0.0029 24.2 6.0 64 29-109 56-122 (288)
75 2h78_A Hibadh, 3-hydroxyisobut 34.8 1.2E+02 0.004 23.0 6.8 66 29-110 54-123 (302)
76 2m1z_A LMO0427 protein; homolo 34.0 27 0.00094 23.3 2.5 39 25-80 48-86 (106)
77 3mw8_A Uroporphyrinogen-III sy 34.0 35 0.0012 25.2 3.5 38 29-78 45-82 (240)
78 2pi1_A D-lactate dehydrogenase 33.9 1.3E+02 0.0043 23.8 7.0 94 6-107 52-169 (334)
79 4e5n_A Thermostable phosphite 33.8 1.3E+02 0.0044 23.7 7.0 93 7-107 56-173 (330)
80 2gcg_A Glyoxylate reductase/hy 33.6 82 0.0028 24.7 5.8 91 8-106 65-182 (330)
81 4hcj_A THIJ/PFPI domain protei 33.4 33 0.0011 24.6 3.1 41 32-79 67-109 (177)
82 2o4c_A Erythronate-4-phosphate 33.2 1E+02 0.0036 25.0 6.4 74 21-107 66-144 (380)
83 2fu5_C RAS-related protein RAB 33.0 60 0.0021 22.0 4.5 75 29-107 75-149 (183)
84 2bcg_Y Protein YP2, GTP-bindin 32.3 1.2E+02 0.004 21.1 6.0 54 23-80 69-122 (206)
85 3cpt_A Mitogen-activated prote 32.0 30 0.001 24.4 2.6 18 44-61 15-32 (143)
86 2dbq_A Glyoxylate reductase; D 31.5 1.1E+02 0.0037 24.1 6.2 92 8-107 57-178 (334)
87 3k96_A Glycerol-3-phosphate de 31.1 87 0.003 25.0 5.6 26 30-61 95-120 (356)
88 3pdu_A 3-hydroxyisobutyrate de 31.1 1.5E+02 0.0051 22.3 6.8 67 29-111 52-122 (287)
89 2yfk_A Aspartate/ornithine car 30.4 2.1E+02 0.0071 23.7 7.8 38 69-106 186-223 (418)
90 1z0f_A RAB14, member RAS oncog 30.3 55 0.0019 21.9 3.8 75 29-107 82-156 (179)
91 1zbd_A Rabphilin-3A; G protein 30.3 88 0.003 21.7 5.1 74 30-107 76-149 (203)
92 1sc6_A PGDH, D-3-phosphoglycer 30.1 2.2E+02 0.0076 23.1 8.2 93 7-107 58-173 (404)
93 2kyr_A Fructose-like phosphotr 29.7 33 0.0011 23.1 2.4 38 26-80 52-89 (111)
94 3pfn_A NAD kinase; structural 29.5 21 0.00071 29.2 1.6 13 32-44 244-256 (365)
95 3exr_A RMPD (hexulose-6-phosph 29.3 21 0.00071 26.7 1.5 36 29-64 182-220 (221)
96 3er6_A Putative transcriptiona 28.7 31 0.001 25.3 2.3 45 29-80 69-117 (209)
97 3kkl_A Probable chaperone prot 28.5 28 0.00095 26.4 2.1 41 32-79 96-139 (244)
98 3doj_A AT3G25530, dehydrogenas 27.8 1.7E+02 0.0059 22.3 6.7 68 29-111 72-142 (310)
99 2r48_A Phosphotransferase syst 27.6 38 0.0013 22.5 2.4 37 26-80 49-85 (106)
100 2yv1_A Succinyl-COA ligase [AD 27.5 98 0.0034 24.0 5.2 64 29-109 62-128 (294)
101 2g76_A 3-PGDH, D-3-phosphoglyc 27.5 1.9E+02 0.0064 22.9 6.9 92 8-107 79-193 (335)
102 1mx3_A CTBP1, C-terminal bindi 27.4 2.3E+02 0.0079 22.4 8.1 93 7-107 74-196 (347)
103 2fli_A Ribulose-phosphate 3-ep 27.3 56 0.0019 23.6 3.6 33 28-60 183-218 (220)
104 2ekl_A D-3-phosphoglycerate de 27.1 2.2E+02 0.0075 22.1 8.0 93 7-107 57-170 (313)
105 3tkl_A RAS-related protein RAB 27.0 81 0.0028 21.6 4.3 74 29-106 83-156 (196)
106 3dz8_A RAS-related protein RAB 26.8 59 0.002 22.5 3.5 75 29-107 90-164 (191)
107 3k5p_A D-3-phosphoglycerate de 26.2 2.7E+02 0.0093 22.8 8.5 93 7-107 69-184 (416)
108 3gra_A Transcriptional regulat 26.1 36 0.0012 24.7 2.3 41 32-80 69-110 (202)
109 2fg5_A RAB-22B, RAS-related pr 25.6 97 0.0033 21.3 4.5 77 27-107 88-164 (192)
110 3tw8_B RAS-related protein RAB 25.5 82 0.0028 21.1 4.0 51 25-80 72-122 (181)
111 4dgs_A Dehydrogenase; structur 25.4 1.5E+02 0.0051 23.6 6.0 93 7-107 82-199 (340)
112 1wwk_A Phosphoglycerate dehydr 25.4 2.3E+02 0.008 21.8 7.6 92 8-107 56-170 (307)
113 3clv_A RAB5 protein, putative; 25.3 89 0.0031 21.2 4.3 74 27-107 109-182 (208)
114 1f35_A Olfactory marker protei 25.3 48 0.0016 23.2 2.6 17 146-162 118-134 (162)
115 2d0i_A Dehydrogenase; structur 25.2 1.2E+02 0.0041 23.8 5.4 93 7-107 53-174 (333)
116 1ml4_A Aspartate transcarbamoy 25.1 87 0.003 24.7 4.5 61 41-106 122-185 (308)
117 4adb_A Succinylornithine trans 25.0 2.2E+02 0.0075 21.9 7.0 68 36-108 129-223 (406)
118 2r4q_A Phosphotransferase syst 24.8 38 0.0013 22.6 2.0 37 26-80 49-85 (106)
119 3l0i_B RAS-related protein RAB 24.6 1E+02 0.0035 21.4 4.5 52 25-80 96-147 (199)
120 1oi7_A Succinyl-COA synthetase 24.5 1.3E+02 0.0045 23.2 5.4 64 29-109 56-122 (288)
121 3n7t_A Macrophage binding prot 24.3 37 0.0013 25.8 2.1 29 32-60 103-134 (247)
122 3f5d_A Protein YDEA; unknow pr 24.0 60 0.002 23.7 3.2 40 33-80 62-102 (206)
123 2gf9_A RAS-related protein RAB 23.9 97 0.0033 21.2 4.2 80 24-107 84-163 (189)
124 1z0s_A Probable inorganic poly 23.9 24 0.00082 27.6 1.0 13 32-44 170-182 (278)
125 4es6_A Uroporphyrinogen-III sy 23.3 51 0.0017 24.6 2.7 41 29-78 53-93 (254)
126 3re1_A Uroporphyrinogen-III sy 22.4 51 0.0017 25.0 2.6 40 30-78 62-101 (269)
127 2b6h_A ADP-ribosylation factor 22.2 1.7E+02 0.0057 20.2 5.3 52 26-80 88-139 (192)
128 1ky3_A GTP-binding protein YPT 21.8 66 0.0023 21.6 2.9 52 29-80 76-127 (182)
129 1ek0_A Protein (GTP-binding pr 21.7 1.1E+02 0.0036 20.1 3.9 47 29-79 70-116 (170)
130 1ko7_A HPR kinase/phosphatase; 21.7 1.3E+02 0.0045 23.8 4.9 79 24-109 92-175 (314)
131 2f7s_A C25KG, RAS-related prot 21.6 1.2E+02 0.0041 21.3 4.4 74 30-106 103-176 (217)
132 1z0j_A RAB-22, RAS-related pro 21.4 1.1E+02 0.0036 20.2 3.9 48 29-80 73-120 (170)
133 2a5j_A RAS-related protein RAB 21.3 1.1E+02 0.0037 21.0 4.0 79 24-106 83-161 (191)
134 1r2q_A RAS-related protein RAB 21.2 1.1E+02 0.0038 20.1 3.9 75 29-107 73-147 (170)
135 2il1_A RAB12; G-protein, GDP, 21.0 86 0.003 21.7 3.4 48 29-80 93-140 (192)
136 1gdh_A D-glycerate dehydrogena 20.7 3E+02 0.01 21.3 8.3 93 7-107 55-174 (320)
137 3cpj_B GTP-binding protein YPT 20.7 1.5E+02 0.005 21.0 4.8 80 24-107 75-154 (223)
138 3l4e_A Uncharacterized peptida 20.7 71 0.0024 23.4 3.0 53 45-107 10-62 (206)
139 4huj_A Uncharacterized protein 20.7 79 0.0027 23.0 3.3 26 29-60 76-101 (220)
140 3jtm_A Formate dehydrogenase, 20.6 3.2E+02 0.011 21.7 8.6 93 7-107 75-192 (351)
141 2oil_A CATX-8, RAS-related pro 20.3 1.6E+02 0.0053 20.1 4.7 79 25-107 88-166 (193)
142 4e21_A 6-phosphogluconate dehy 20.2 2.4E+02 0.0083 22.3 6.3 66 29-111 73-142 (358)
143 2p5s_A RAS and EF-hand domain 20.2 73 0.0025 22.2 2.9 48 29-80 95-142 (199)
No 1
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.90 E-value=9.4e-23 Score=154.63 Aligned_cols=136 Identities=55% Similarity=0.942 Sum_probs=111.3
Q ss_pred ChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 28 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 28 ~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..+++.+||+||||||+|++++++++|.|+|++...|....++||++++|+++||. ++...++..+...+..+||.+++
T Consensus 62 ~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp CGGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred hHHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 37899999999999999999999999999999976655557899999999999997 67778888999999999999998
Q ss_pred CccccCCCcccccccccCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 108 IGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
.++..+. ....+.+.++..||...+.+ +++..|+++++++|+++|++|++.+++|++
T Consensus 141 ~~~~~~~-~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~ 198 (198)
T 3b6i_A 141 IGYAAQE-LFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198 (198)
T ss_dssp CTTCSGG-GGCCSSCCCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccc-ccccccccCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7764210 00011245677888877754 445679999999999999999999998863
No 2
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.89 E-value=2.4e-22 Score=152.64 Aligned_cols=135 Identities=48% Similarity=0.731 Sum_probs=106.6
Q ss_pred ChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 28 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 28 ~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..+++.+||+||||||+|++++++++|+|+|++...|....|+||++++|+++||..++...++..+...|..+||.+++
T Consensus 65 ~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~ 144 (200)
T 2a5l_A 65 TLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLG 144 (200)
T ss_dssp CHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECC
T ss_pred hHHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEEC
Confidence 38899999999999999999999999999999976655567899999999999998677777888999999999999998
Q ss_pred CccccCCCcccccccccCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 108 IGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
.++..+.. .+.+.++..|+...+.. +++..|+++++++|+++|++|++.+++|++
T Consensus 145 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~ 200 (200)
T 2a5l_A 145 IPYSEPAL---LETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS 200 (200)
T ss_dssp CCC---------------CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCccc---cccccCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 76541110 11123456677766544 445579999999999999999999998863
No 3
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.89 E-value=3.7e-23 Score=157.59 Aligned_cols=143 Identities=24% Similarity=0.286 Sum_probs=105.6
Q ss_pred CCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcC
Q 031039 23 DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHG 102 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g 102 (167)
++++...+++.+||+||||||+|++++++++|.|+|++..+|....++||++++|+++|+.+++++.++..+...+..+|
T Consensus 43 ~~~~~~~~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G 122 (193)
T 3d7n_A 43 NLSEDGWAALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHG 122 (193)
T ss_dssp CCCHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHhHHHHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCC
Confidence 45542268999999999999999999999999999999766666789999999999998876677889999999999999
Q ss_pred cEEecCccccCCCc--ccccccccCCCCccceecC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 103 MIFVPIGYTFGAGM--FEMEKVKGGSPYGAGTFAG-DG-SRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 103 ~~vv~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~-~~-~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
|.+++..+..+... ..-+...+|++||..++.+ ++ ...|++++++.|+++|++|++.+++|+.
T Consensus 123 ~~~vg~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~~ 189 (193)
T 3d7n_A 123 GLWVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHKS 189 (193)
T ss_dssp CEECCCC-------------------CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CEEeCCccCcccccccccccCCCCCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998776532210 0001123466688766643 22 1238999999999999999999999874
No 4
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.87 E-value=8.7e-22 Score=151.22 Aligned_cols=131 Identities=37% Similarity=0.557 Sum_probs=106.8
Q ss_pred ChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 28 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 28 ~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..+++.+||+||||||+|++++++++|.|||++...|....++||++++|+++||..++...++..+...+..+||.+++
T Consensus 72 ~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 151 (211)
T 1ydg_A 72 TPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTP 151 (211)
T ss_dssp CHHHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECC
T ss_pred HHHHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 38999999999999999999999999999999976665567999999999999998766677888999999999999998
Q ss_pred CccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 108 IGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
.++..+. + -.+++..||+..+.. ...|+++++++|+++|++|++.+++|+.
T Consensus 152 ~~~~~~~----~-~~~~~~~~g~~~~~~--~~~p~~~~~~~a~~~g~~l~~~~~~~~~ 202 (211)
T 1ydg_A 152 PGYTDEV----I-FKSGGNPYGASVTAN--GQPLLENDRASIRHQVRRQVELTAKLLE 202 (211)
T ss_dssp CTTCSHH----H-HHTTCCSSSCEEECC--SSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChh----h-ccCCCCCccceeecC--CCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7653100 0 013356677755421 1468999999999999999999999873
No 5
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=1e-21 Score=149.29 Aligned_cols=132 Identities=42% Similarity=0.682 Sum_probs=106.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+++.+||+||||||+|++++++++|.|||++..+|....++||++++|+++||..++...++..+...+..+||.+++.
T Consensus 65 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 65 LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred HHHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 78999999999999999999999999999999766655679999999999999876666678889999999999999987
Q ss_pred ccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 109 GYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
++..+.. ....+++.+|+.+.+.. ...|+++++++|+++|++|++.+++|++
T Consensus 145 ~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~g~~l~~~~~~l~~ 196 (199)
T 2zki_A 145 GYGIPEL---FQTTTGGGPYGATHLGS--KEELDEMERKIARFQGKRITEVAKAIKC 196 (199)
T ss_dssp TTCSTHH---HHCSSSCCSSCCCCBSS--CSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCccc---cccccCCCCcceeeecC--CCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6542110 00013456677654421 1168999999999999999999999875
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.79 E-value=1.4e-18 Score=131.51 Aligned_cols=127 Identities=30% Similarity=0.468 Sum_probs=97.0
Q ss_pred CCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcC-cccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcC
Q 031039 24 VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG-LWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHG 102 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~-~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g 102 (167)
+.+...+++.+||+||||||+|++++++.+|.|+|++.. .| ..++||++++|+++|+..++...++..+...+..+|
T Consensus 42 l~~~~~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g 119 (188)
T 2ark_A 42 VDEATKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFG 119 (188)
T ss_dssp TTTCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTT
T ss_pred hhhCCHHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Confidence 344447899999999999999999999999999999854 22 468999999999976444567677888888888899
Q ss_pred cEEecCccccCCCcccccccccCCCCccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhc
Q 031039 103 MIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPT-ELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 103 ~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
|.+++.+...+.. ....||.... ..|+ ++++++|+++|++|++.+++++.
T Consensus 120 ~~~~~~~~~~~~~--------~~~~~g~~~~-----~~p~~~~~~~~~~~~g~~la~~~~~~~~ 170 (188)
T 2ark_A 120 FLVFGVTDYVGKK--------FTLHYGAVVA-----GEPRSEEEKEACRRLGRRLAEWVAIFVD 170 (188)
T ss_dssp CEECCEEEEEETT--------EEESSSEEEE-----SSCCSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cEEeCCCcccccc--------ccCCCcceee-----cCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998753211100 1112343221 3577 99999999999999999998864
No 7
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.78 E-value=9.2e-20 Score=135.18 Aligned_cols=111 Identities=12% Similarity=0.175 Sum_probs=89.1
Q ss_pred cCCCCCC-CCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHH
Q 031039 16 MSAPPKS-DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTA 94 (167)
Q Consensus 16 ~~~~~~~-d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l 94 (167)
+.++++. +.+++ .+++.+||+||||||||++.++ ++.|++++. ...++||++++|+|+||.+++ +..|
T Consensus 38 ~~~~~~~~~~~~~-~~~~~~~d~ii~Gspty~g~~p--~~~~l~~l~----~~~~~~k~va~fgs~g~~~~a----~~~l 106 (159)
T 3fni_A 38 VVDLGAAVDLQEL-RELVGRCTGLVIGMSPAASAAS--IQGALSTIL----GSVNEKQAVGIFETGGGDDEP----IDPL 106 (159)
T ss_dssp EEESSSCCCHHHH-HHHHHTEEEEEEECCBTTSHHH--HHHHHHHHH----HHCCTTSEEEEECCSSSCBCC----HHHH
T ss_pred EEECcCcCCHHHH-HHHHHhCCEEEEEcCcCCCCcc--HHHHHHHHH----hhcccCCEEEEEEcCCCCcHH----HHHH
Confidence 4455555 55555 6788889999999999998865 599999983 345799999999999997543 3478
Q ss_pred HHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031039 95 ITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 162 (167)
Q Consensus 95 ~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~ 162 (167)
.+.|...|+.++++++.+ +..|+++++++|+++|++|++.+++
T Consensus 107 ~~~l~~~G~~~v~~~~~~-------------------------~~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 107 LSKFRNLGLTTAFPAIRI-------------------------KQTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp HHHHHHTTCEESSSCBCC-------------------------SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEecCceEE-------------------------EeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999876542 3579999999999999999987754
No 8
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.78 E-value=1.5e-19 Score=134.05 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=88.5
Q ss_pred cCCCCCCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHH
Q 031039 16 MSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAI 95 (167)
Q Consensus 16 ~~~~~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~ 95 (167)
++++++.+.+++ .+++.++|+||||||||++.++ . +.|++++. ...++||++++|+|+||.+. ++..+.
T Consensus 34 ~~~~~~~~~~~~-~~~~~~~d~ii~Gspty~g~~p-~-~~fl~~l~----~~~l~gk~v~~fgs~g~~g~----a~~~l~ 102 (161)
T 3hly_A 34 MVDLRAVDPQEL-IEAVSSARGIVLGTPPSQPSEA-V-ATALSTIF----AAAHNKQAIGLFDSYGGDDE----PIDALL 102 (161)
T ss_dssp EEETTTCCHHHH-HHHHHHCSEEEEECCBSSCCHH-H-HHHHHHHH----HHCCTTSEEEEECCCCSSBC----CHHHHH
T ss_pred EEECCCCCHHHH-HHHHHhCCEEEEEcCCcCCchh-H-HHHHHHHH----hhhhCCCEEEEEEcCCCCcH----HHHHHH
Confidence 344555555555 6677899999999999987755 4 99999983 23589999999999999632 345888
Q ss_pred HHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031039 96 TQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 163 (167)
Q Consensus 96 ~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l 163 (167)
+.|...|+.++++++.+ +..|+++++++|+++|++|++.+++-
T Consensus 103 ~~l~~~G~~~v~~~~~~-------------------------~~~P~~~dl~~~~~~g~~la~~l~~~ 145 (161)
T 3hly_A 103 AQFRNLGLHTAFPPIRV-------------------------KDQPTEAIYQQCEESGTDLGQWLTRA 145 (161)
T ss_dssp HHHHHTTCEESSSCBCC-------------------------CSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCEEecCceEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 88889999999766542 35699999999999999999987653
No 9
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.73 E-value=5.8e-17 Score=128.22 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=92.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc-ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWR-TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~-~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
.++|.+||+|||+||+||+++++.+|+|||++...|. ...++||++++|+++|+.+ +. .++..++..+..+||.+++
T Consensus 93 ~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~g-g~-~a~~~Lr~~l~~lg~~~v~ 170 (247)
T 2q62_A 93 RELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQ-SF-NAVNQMRILGRWMRMITIP 170 (247)
T ss_dssp HHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSC-CC-HHHHHHHHHHHHTTCEECS
T ss_pred HHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCcc-HH-HHHHHHHHHHHHCCCEEeC
Confidence 7899999999999999999999999999999976543 2468999999999988864 33 4677888888899999986
Q ss_pred CccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 108 IGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
..+.++ ..+. .++.++. ..+++.+++++.+++++++.+++++.
T Consensus 171 ~~v~i~------------~~~~--~fd~~g~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 213 (247)
T 2q62_A 171 NQSSVA------------KAFQ--EFDANGR-MKPSSYYDRVVDVMEELVKFTLLTRD 213 (247)
T ss_dssp CCEEES------------SGGG--GBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEe------------cchh--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554321 1111 1111222 34678889999999999999988874
No 10
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=99.70 E-value=1.7e-16 Score=127.50 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=92.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc-ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWR-TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~-~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
.++|.+||+|||+||+||+++++.+|+|||++...|. ...++||++++|+++|+.+ +. .++..++..+..+||.+++
T Consensus 118 ~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~g-g~-~a~~~Lr~~l~~lg~~vv~ 195 (279)
T 2fzv_A 118 RALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQ-SF-NAVNTLRLLGRWMRMFTIP 195 (279)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSC-CC-HHHHHHHHHHHHTTCEECS
T ss_pred HHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCcc-HH-HHHHHHHHHHHhcCcEEeC
Confidence 6899999999999999999999999999999976543 2468999999999988864 33 4677888888899999986
Q ss_pred CccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 108 IGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
..+.++. .+. .++.++. ..+++.+++++.+++++++.+++++.
T Consensus 196 ~~v~v~~------------~~~--~fd~~G~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 238 (279)
T 2fzv_A 196 NQSSIAK------------AFQ--EFDAAGR-MKPSPYYDRIADVMEELVRFTALVRP 238 (279)
T ss_dssp CCEEETT------------GGG--TBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CEEEEec------------ccc--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543211 111 1111222 34677889999999999999988874
No 11
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.68 E-value=1.2e-16 Score=114.81 Aligned_cols=102 Identities=22% Similarity=0.342 Sum_probs=83.9
Q ss_pred CCCCCChhHHhhCCEEEEeccccCCCchH--HHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHH
Q 031039 23 DVPIITPNELAEADGFVFGFPTRFGMMAA--QFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH 100 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~~~~~~--~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~ 100 (167)
++.+.+.+++.++|.||||+|||++++++ .++.|++++.. .++||++++|+++||.. + .++..+.+.|..
T Consensus 34 ~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~-----~l~~k~~~~f~t~g~~~-~--~a~~~l~~~l~~ 105 (138)
T 5nul_A 34 NVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEIST-----KISGKKVALFGSYGWGD-G--KWMRDFEERMNG 105 (138)
T ss_dssp EGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGG-----GCTTCEEEEEEEESSSC-S--HHHHHHHHHHHH
T ss_pred EhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHh-----hcCCCEEEEEEecCCCC-C--hHHHHHHHHHHH
Confidence 34444567899999999999999998765 79999999842 28999999999999863 3 456788889999
Q ss_pred cCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 101 HGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 101 ~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
.|+.+++.++.+ +..|++++ ++|+++|++|++
T Consensus 106 ~G~~~v~~~~~~-------------------------~~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 106 YGCVVVETPLIV-------------------------QNEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp TTCEECSCCEEE-------------------------ESSCGGGH-HHHHHHHHHHHT
T ss_pred CCCEEECCceEE-------------------------ecCCCHHH-HHHHHHHHHHhc
Confidence 999999766542 25688999 999999999975
No 12
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.68 E-value=5.5e-17 Score=127.22 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=86.8
Q ss_pred CCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHc
Q 031039 22 SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHH 101 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~ 101 (167)
+++..+ .+++.+||+|||+||+|++++++.+|.||||+...+....++||++++|+++|+.+. ..++..+...+..+
T Consensus 68 ~~~~~~-~~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g~--~~~~~~l~~~l~~~ 144 (242)
T 1sqs_A 68 DDGGVI-KKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGS--DNVSEYLRDIFSYM 144 (242)
T ss_dssp STHHHH-HHHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCCS--CCHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCCch--hhHHHHHHHHHHHC
Confidence 344444 789999999999999999999999999999996543334789999999999987532 24566888888899
Q ss_pred CcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031039 102 GMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 162 (167)
Q Consensus 102 g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~ 162 (167)
||.+++. +.. + ..++++.+++++++|++|++.++.
T Consensus 145 G~~~v~~-~~~--------------------~-----~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 145 GGQILHQ-VSI--------------------T-----NSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp TCEEEEE-EEE--------------------E-----GGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred CCeeeeE-EEE--------------------e-----ccCChHHHHHHHHHHHHHHHHHhc
Confidence 9999874 210 0 012246889999999999988754
No 13
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=99.67 E-value=1.9e-15 Score=115.80 Aligned_cols=121 Identities=20% Similarity=0.161 Sum_probs=91.6
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.++|.+||+|||+||+||+++++.+|+|||++.. +....|+||++++++++|+..|+. .++..++..|..+|+.+++.
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~-~~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~~ 145 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSR-VSPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLNR 145 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTT-SSSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECCS
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcc-cCCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcCC
Confidence 7889999999999999999999999999999965 233579999999999976544454 46778888889999999974
Q ss_pred -ccccCCCcccccccccCCCCccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 031039 109 -GYTFGAGMFEMEKVKGGSPYGAGTFAGD-GSRQPTELELEQAFHQGKHIAGIAKKLKGS 166 (167)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~e~l~~a~~lG~~la~~~~~l~~~ 166 (167)
.+.++.. ...++.+ |. ..+++..++++.+.+++++.+++++..
T Consensus 146 ~~v~i~~~--------------~~~fd~~~g~-l~d~~~~~~l~~~~~~l~~~~~~~~~~ 190 (199)
T 4hs4_A 146 PEAMIGQV--------------TGKVDAQTLE-LSDVATREFLARQLDALAALARTLSPR 190 (199)
T ss_dssp SCEEECSG--------------GGTBCSSSCC-BCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEeech--------------hhhcCCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2332110 0112211 32 347888999999999999999887643
No 14
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=99.66 E-value=3.8e-16 Score=118.84 Aligned_cols=119 Identities=15% Similarity=0.061 Sum_probs=88.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc------ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWR------TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHG 102 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~------~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g 102 (167)
.+++.+||+|||+||+||+++++.+|+|||++...+. ...|+||++++++++|+.+ ....+..++..+..+|
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g--~~~~~~~l~~~l~~~G 139 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGAS--PEEVFEDYRSLLPFIR 139 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTT
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcc--hhHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999975421 2468999999999988742 2334567888888999
Q ss_pred cEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031039 103 MIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 164 (167)
Q Consensus 103 ~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~ 164 (167)
|.+++..+...+. ...++ ++...++++..++++.+.+++.+.+.+|+
T Consensus 140 ~~~v~~~v~~~~~--------------~~~f~-~g~~~~~~~~~~~l~~~~~~l~~~~~~~~ 186 (192)
T 3fvw_A 140 MHLVDQLTGVPIN--------------SEAWS-TGILKVSAEKLAELSAQADALLSAIENLE 186 (192)
T ss_dssp CEECCCCEEECCC--------------TTHHH-HCCCCCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred Ceeecceeecccc--------------hhhcc-CCccccCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999865432111 11111 23334688999999999999988876654
No 15
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.65 E-value=1.7e-15 Score=114.69 Aligned_cols=118 Identities=17% Similarity=0.158 Sum_probs=85.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+++.+||+|||+||+||+++++.+|+|||++...+. ..++||++++|+++|+..++ ..++..++..+...|+.+++.
T Consensus 67 ~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g~-~~~~~~l~~~l~~~g~~~~~~ 144 (193)
T 1rtt_A 67 REQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFGT-ARAQYHLRQTLVFLDVHPLNK 144 (193)
T ss_dssp HHHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHHTCEECCS
T ss_pred HHHHHhCCEEEEEccccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHcCCEEcCC
Confidence 6799999999999999999999999999999965432 46899999999998543344 356778888888899999975
Q ss_pred -ccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031039 109 -GYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 163 (167)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l 163 (167)
.+.+.. . + ..++.++. ..+++..++++++++++.+.+.+.
T Consensus 145 ~~~~~~~-----------~-~--~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~ 185 (193)
T 1rtt_A 145 PEVMISS-----------A-Q--NAFDAQGR-LLDDKARELIQQQLQALQLWVREG 185 (193)
T ss_dssp SCEEECS-----------G-G--GTBCSTTC-BCCHHHHHHHHHHHHHHHC-----
T ss_pred CeEEecc-----------h-H--hhcCcCCC-cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 333210 0 0 01111222 456888999999999998877654
No 16
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=99.64 E-value=2e-15 Score=115.07 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=87.6
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+++.+||+|||+||+||+++++.+|+|||++... ....|+||++++++++++..|+. .++..++..|..+|+.+++.
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~ 144 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNK 144 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCS
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCC
Confidence 78999999999999999999999999999999652 23578999999999754433443 56778888888999999864
Q ss_pred c-cccCCCcccccccccCCCCccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031039 109 G-YTFGAGMFEMEKVKGGSPYGAGTFAGD-GSRQPTELELEQAFHQGKHIAGIAKKLK 164 (167)
Q Consensus 109 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~e~l~~a~~lG~~la~~~~~l~ 164 (167)
+ +.++. . ...+..+ |. ..|++..++++++.++++..+++++
T Consensus 145 ~~~~~~~------------~--~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~ 187 (193)
T 3svl_A 145 PEFMGGV------------I--QNKVDPQTGE-VIDQGTLDHLTGQLTAFGEFIQRVK 187 (193)
T ss_dssp SCEEETT------------G--GGGEETTTTE-ECCHHHHHHHHHHHHHHHHHTC---
T ss_pred CeEeecc------------h--hhhcCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 22110 0 1112222 32 3578899999999999998876654
No 17
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=99.64 E-value=5.2e-15 Score=112.74 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=90.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.++|.+||++||+||.|++++++.+|++||.+++.+....|.||++++++++++..|+. .++..++..|...|+.++..
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~~~ 140 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMMSM 140 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEECCC
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEccC
Confidence 46899999999999999999999999999999765556789999999999876655453 56778888888899998864
Q ss_pred c-cccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031039 109 G-YTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 163 (167)
Q Consensus 109 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l 163 (167)
+ +.++ .....++.+|. ..|++..+.++.+.+++++.+++.
T Consensus 141 p~~~i~--------------~~~~~fd~~G~-l~de~~~~~l~~~~~~~~~~i~~~ 181 (190)
T 3u7r_A 141 PEAYIQ--------------WHAEAYAADGS-VTDEKTAKFLQGFVDAFVDWIEKH 181 (190)
T ss_dssp SCCEEE--------------CCGGGBCTTSC-BCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEe--------------ccHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3 2111 01112222332 457788888999999999888763
No 18
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=99.64 E-value=1.5e-17 Score=124.53 Aligned_cols=115 Identities=19% Similarity=0.124 Sum_probs=83.2
Q ss_pred CCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccc-------cCCCCCeEEEEEccCCCCC-CHHHHHHHH
Q 031039 23 DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRT-------QQLAGKPAGMFYSTGSQGG-GQETTALTA 94 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~-------~~l~gK~~~~f~s~g~~~g-g~~~~l~~l 94 (167)
++..+ .+++.+||+|||++|+||+++++++|.||||+...+.. ..++||++++|+++|+... +....+..+
T Consensus 61 ~~~~~-~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l 139 (184)
T 1rli_A 61 DYDSI-IERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQF 139 (184)
T ss_dssp CHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHH
T ss_pred CHHHH-HHHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHH
Confidence 33344 68999999999999999999999999999998543211 2578999999999887421 112356778
Q ss_pred HHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 95 ITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 95 ~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
...+..+||.+++..+. .|...+ ....+++.+++|+++|+++|.
T Consensus 140 ~~~l~~~G~~~~~~~~~------------~g~~~~--------~~~~~~~~l~~a~~lg~~~~~ 183 (184)
T 1rli_A 140 EHIFHFMGMSFKGYVLG------------EGNRPG--------DILRDHQALSAASRLLKRSDA 183 (184)
T ss_dssp HHHHHHHTCEEEEEEEE------------ECSSTT--------GGGGCHHHHHHHHHTTCCCCC
T ss_pred HHHHHHcCCccceEEEE------------ccCCcc--------hhhcCHHHHHHHHHhhhhccc
Confidence 88888899999863211 011111 123578999999999998763
No 19
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.64 E-value=8.1e-16 Score=114.77 Aligned_cols=111 Identities=18% Similarity=0.145 Sum_probs=85.6
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+++.+||+|||+||+|++++++.+|+|||++.. ..++||++++|+++|+..++ ..++..++..+..+||.+++.
T Consensus 58 ~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~----~~~~gK~~~~~~~sgg~~g~-~~a~~~l~~~l~~~g~~~v~~ 132 (174)
T 3gfs_A 58 KQRVTKADAIVLLSPEYHSGMSGALKNALDFLSS----EQFKYKPVALLAVAGGGDGG-INALNNMRTVMRGVYANVIPK 132 (174)
T ss_dssp HHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCH----HHHTTCEEEEEEECCSTTCS-HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCH----hhhCCCcEEEEEECCCChhH-HHHHHHHHHHHHHcCCEEecc
Confidence 5699999999999999999999999999999842 46899999999965443333 356778888999999999986
Q ss_pred ccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031039 109 GYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 161 (167)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~ 161 (167)
++.++. . .++ .....++++..+.++++.+++++.++
T Consensus 133 ~v~i~~------------~----~f~-~~~~~~~~~~~~~l~~~~~~l~~~~~ 168 (174)
T 3gfs_A 133 QLVLKP------------V----HID-VENATVAENIKESIKELVEELSMFAK 168 (174)
T ss_dssp EEEECG------------G----GEE-TTTTEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEech------------h----hcC-CCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 554311 0 011 01245778899999999999988765
No 20
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.62 E-value=3.6e-16 Score=131.76 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=89.0
Q ss_pred cCCCCCCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHH
Q 031039 16 MSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAI 95 (167)
Q Consensus 16 ~~~~~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~ 95 (167)
+++.++++++++ ++++.+||+||||||||++++.+.|+.|++.+. ...++||++++|||+||++++.. .+.
T Consensus 302 ~~d~~~~~~s~i-~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~----~~~~~~K~~~~FGSyGWsg~a~~----~~~ 372 (410)
T 4dik_A 302 FSDEERPAISEI-LKDIPDSEALIFGVSTYEAEIHPLMRFTLLEII----DKANYEKPVLVFGVHGWAPSAER----TAG 372 (410)
T ss_dssp ECSSCCCCHHHH-HHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHH----HHCCCCCEEEEEEECCCCCTTSC----CHH
T ss_pred eccCCCCCHHHH-HHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHH----hcccCCCEEEEEECCCCCcHHHH----HHH
Confidence 567788888888 999999999999999999999999999999983 34679999999999999865543 788
Q ss_pred HHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHH
Q 031039 96 TQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHI 156 (167)
Q Consensus 96 ~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~l 156 (167)
+.|...|++++++.... ...++++++++|.+++++.
T Consensus 373 ~~l~~~~~~~v~~~~~~-------------------------~~~~de~~lee~~~~~~~~ 408 (410)
T 4dik_A 373 ELLKETKFRILSFTEIK-------------------------GSNMDERKIEEAISLLKKE 408 (410)
T ss_dssp HHHTTSSCEEEEEEEEC-------------------------STTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEECcEEEE-------------------------CCCCCHHHHHHHHHHHHHh
Confidence 88899999999764331 1347788889888888764
No 21
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.61 E-value=9.5e-17 Score=133.36 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=84.1
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+++.+||+||||||+|++++++.+|+|+|++...+... |+||++++|+++||.+ + ++..+...|..+|+.++++
T Consensus 302 ~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~-l~~k~~~~~~~~g~~~-~---a~~~l~~~l~~~g~~~~~~ 376 (404)
T 2ohh_A 302 VKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNR-TLTRKALVFGSMGGNG-G---ATGTMKELLAEAGFDVACE 376 (404)
T ss_dssp HHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGG-TCCEEEEEEEEESSSC-C---HHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccc-cCCCEEEEEEecCCCC-h---hHHHHHHHHHHCCCEEEeE
Confidence 558999999999999999999999999999986544334 7999999999999863 3 2347888888899999874
Q ss_pred ccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031039 109 GYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 161 (167)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~ 161 (167)
+.+ ...++++++++++++|+++++.++
T Consensus 377 -~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 377 -EEV-------------------------YYVPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp -EEE-------------------------ESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -EEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHh
Confidence 321 135789999999999999998764
No 22
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.61 E-value=1.1e-15 Score=116.45 Aligned_cols=115 Identities=19% Similarity=0.112 Sum_probs=86.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHH-HHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTAL-TAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~-~l~~~l~~~g~~vv~ 107 (167)
.+++.+||+|||+||+|++++++.+|+|+|++. ...++||++++|+++|+.+ +. .++. .++..+..+|+.+++
T Consensus 64 ~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~----~~~~~gK~~~~~~tgg~~~-~~-~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 64 VDATCNADGLIVATPIYKASYTGLLKAFLDILP----QFALAGKAALPLATGGSPA-HV-LALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSC----TTTTTTCEEEEEEEESSGG-GG-GHHHHTHHHHHHTTTCSEEC
T ss_pred HHHHHHCCEEEEEeCccCCCCCHHHHHHHHhcc----ccccCCCEEEEEEECCCcc-hh-hHHHHHHHHHHHHcCCEecc
Confidence 578999999999999999999999999999984 3478999999999987753 32 3443 578888889999997
Q ss_pred CccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031039 108 IGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 164 (167)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~ 164 (167)
.++.++ +..+. +..++. .++++.+++++++++++++.+++.+
T Consensus 138 ~~v~~~-----------~~~~~---~~~~g~-~~d~~~~~~l~~~~~~l~~~i~~~~ 179 (197)
T 2vzf_A 138 QSFFLV-----------QSQFS---VVDGKL-AVEDDVASQLNNAIDHFRLSLSSEP 179 (197)
T ss_dssp CCEEEE-----------SCCC--------CC-CSCHHHHHHHHHHHHHHHHTCCCCG
T ss_pred ceEEEe-----------chhhc---ccCCCC-cCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 654321 11111 111222 6889999999999999998765443
No 23
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=99.61 E-value=7.3e-16 Score=117.52 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=84.0
Q ss_pred CCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHH-HHHHHHH
Q 031039 22 SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALT-AITQLVH 100 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~-l~~~l~~ 100 (167)
+++..+ .+++.+||+|||+||+||+++++.+|+|||++.. ..|+||++++++++|+.++. ..++. ++..|..
T Consensus 74 ~~~~~~-~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~----~~l~gK~~~~v~t~G~~~~~--~~~~~~L~~il~~ 146 (191)
T 3k1y_A 74 TKLEEI-TSALSASDGLVVATPVFKASYTGLFKMFFDILDT----DALTGMPTIIAATAGSARHS--LVLDYALRPLLSY 146 (191)
T ss_dssp HHHHHH-HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT----TTTTTCEEEEEEEESSSTTT--THHHHTHHHHHHH
T ss_pred HHHHHH-HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh----hhcCCCEEEEEEeCCCcchh--hHHHHHHHHHHHH
Confidence 344445 8899999999999999999999999999999953 57899999999998876433 23334 7778888
Q ss_pred cCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031039 101 HGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 163 (167)
Q Consensus 101 ~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l 163 (167)
+||.+++..+... ... ++ .. -+++..+++++++++++..+++-
T Consensus 147 lg~~vv~~~v~~~-----------~~~-----f~--~~--~~~~~~~rl~~~~~~~~~~~~~~ 189 (191)
T 3k1y_A 147 MRAVVVPTGVFAA-----------TED-----FG--GP--EGAEFNKRIARAAGELASLIVEE 189 (191)
T ss_dssp TTCEECSCCEEEE-----------GGG-----CS--HH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEcCcEEEec-----------hhh-----cC--CC--CCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997654321 000 10 01 13566777778888888777653
No 24
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.60 E-value=3.9e-15 Score=124.31 Aligned_cols=104 Identities=24% Similarity=0.192 Sum_probs=86.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCC-CCCeEEEEEccCCCCCCHHHHHHHHHHHHHH-cCcEEe
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVH-HGMIFV 106 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l-~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~-~g~~vv 106 (167)
.+++.+||+||||||+|++++++++|+|+|++.. ..+ +||++++|+++||.+ + ++..+...|.. +|+.++
T Consensus 302 ~~~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~----~~~~~~K~~~~~~t~g~~~-~---a~~~l~~~l~~~~g~~~~ 373 (414)
T 2q9u_A 302 ALHTYDSGAVAFASPTLNNTMMPSVAAALNYVRG----LTLIKGKPAFAFGAFGWSN-R---AVPDIVAELRDGCKADVY 373 (414)
T ss_dssp HHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHH----HTTTTTSBEEEEEEESSSC-C---HHHHHHHHHHHTSCCBCC
T ss_pred HHHHHhCCEEEEEcCccCcCchHHHHHHHHHHHh----hcccCCCEEEEEEecCCCc-h---hHHHHHHHHHhhcCcEEc
Confidence 4589999999999999999999999999999843 246 899999999999863 3 24577788888 899988
Q ss_pred cCc-cccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 107 PIG-YTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 107 ~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
+.+ +.. ...|+++++++|+++|+++++.++++++
T Consensus 374 ~~~~~~~-------------------------~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 408 (414)
T 2q9u_A 374 DEKGITF-------------------------KFNYTEELLEQAYNAGVDLGKRAIAYCE 408 (414)
T ss_dssp CSSCEEE-------------------------ESCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 754 321 2458899999999999999999888764
No 25
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.60 E-value=3.3e-15 Score=106.45 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=79.1
Q ss_pred CCCCChhHHhhCCEEEEeccccCCCchHH--HHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHc
Q 031039 24 VPIITPNELAEADGFVFGFPTRFGMMAAQ--FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHH 101 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~~~~~~~--~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~ 101 (167)
+.+.+.+++.++|.||||+|+|+++++++ +|.|+|++. ..++||++++|+++||.. + .+...+...+...
T Consensus 36 ~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~-----~~l~~k~~~~~~t~g~~~-~--~~~~~l~~~l~~~ 107 (137)
T 2fz5_A 36 FEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLA-----PKLKGKKVGLFGSYGWGS-G--EWMDAWKQRTEDT 107 (137)
T ss_dssp TTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHG-----GGCSSCEEEEEEEESSCC-S--HHHHHHHHHHHHT
T ss_pred cccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhh-----hhcCCCEEEEEEecCCCC-c--hHHHHHHHHHHHC
Confidence 34445788999999999999999999998 999999983 368999999999998852 3 3567888888889
Q ss_pred CcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 102 GMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 102 g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
|+.++ ..+.+ ...|++ +++++++|+++++
T Consensus 108 g~~~~-~~~~~-------------------------~g~~~~--~~~~~~~~~~l~~ 136 (137)
T 2fz5_A 108 GATVI-GTAIV-------------------------NEMPDN--APECKELGEAAAK 136 (137)
T ss_dssp TCEEE-EEEEE-------------------------ESSSSS--CTHHHHHHHHHHT
T ss_pred CCEEc-CcEEE-------------------------eeCCCh--HHHHHHHHHHHhc
Confidence 99998 34331 123544 9999999999874
No 26
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=99.35 E-value=1.8e-16 Score=121.51 Aligned_cols=126 Identities=19% Similarity=0.166 Sum_probs=89.8
Q ss_pred CCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHc
Q 031039 22 SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHH 101 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~ 101 (167)
+++..+ .+++.+||+|||+||+||+++++.+|+|||++...+.. .++||++++|+++++..++ ..++..++..|..+
T Consensus 62 ~~~~~~-~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~-~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~~l~~l 138 (199)
T 3s2y_A 62 APVLTM-AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQ-PLAGKPVALVTASPGMIGG-ARAQYHLRQSLVFL 138 (199)
Confidence 445555 88999999999999999999999999999999654322 6899999999976443333 24566788888889
Q ss_pred CcEEecC-ccccCCCcccccccccCCCCccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031039 102 GMIFVPI-GYTFGAGMFEMEKVKGGSPYGAGTFAGD-GSRQPTELELEQAFHQGKHIAGIAKKLKG 165 (167)
Q Consensus 102 g~~vv~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~e~l~~a~~lG~~la~~~~~l~~ 165 (167)
|+.+++. .+.++.. ...++.+ |. ..|++..++++.+.+++++.+++.+.
T Consensus 139 g~~~v~~~~v~i~~~--------------~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~~ 189 (199)
T 3s2y_A 139 DAYVLNRPEAMIGQV--------------TGKVDAQTLE-LSDVATREFLARQLDALAALARTLSP 189 (199)
Confidence 9999875 3332110 0112112 22 34566778888888888887776653
No 27
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.56 E-value=4.4e-15 Score=107.72 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=80.4
Q ss_pred ChhHHh-hCCEEEEeccccC---CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCc
Q 031039 28 TPNELA-EADGFVFGFPTRF---GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGM 103 (167)
Q Consensus 28 ~~~~l~-~aD~iIigsPtY~---~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~ 103 (167)
+.+++. ++|.||||+|||+ +.+++.++.|+|++. ...++||++++|++++...++...+...+...|...|+
T Consensus 42 ~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~----~~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~ 117 (148)
T 3f6r_A 42 SAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFD----RIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGA 117 (148)
T ss_dssp CCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGG----GTCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTC
T ss_pred CHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhh----ccCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 345667 9999999999998 599999999999983 34689999999998543333334556788889999999
Q ss_pred EEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031039 104 IFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 159 (167)
Q Consensus 104 ~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~ 159 (167)
.++.+++.+ ...|++ +++.+++++++|++.
T Consensus 118 ~~~~~~~~~-------------------------~~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 118 TIIAEGLKM-------------------------EGDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp EECSCCEEE-------------------------ESSGGG-CHHHHHHHHHHHHHT
T ss_pred EEeecceEe-------------------------ecCcch-HHHHHHHHHHHHHhh
Confidence 999776542 235777 999999999999864
No 28
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=99.54 E-value=3.4e-14 Score=108.43 Aligned_cols=109 Identities=18% Similarity=0.115 Sum_probs=78.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc---c------cccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL---W------RTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLV 99 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~---~------~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~ 99 (167)
.+++.+||+|||+||+||+++++.+|.||||+... + ....|+||++++|+++|+..++.......++..+.
T Consensus 89 ~~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~l~~~~~ 168 (208)
T 2hpv_A 89 TDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILN 168 (208)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchHHHHHHHHHH
Confidence 66899999999999999999999999999998642 1 12358999999998887654432334456777778
Q ss_pred HcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 100 HHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 100 ~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
.+|+.+++.-+.. +...+ ....++.+++++++++++++
T Consensus 169 ~~G~~~~~~~~~~------------~~~~~---------~~~~~~~l~~a~~~~~~l~~ 206 (208)
T 2hpv_A 169 FIGVDQVDGLFIE------------GIDHF---------PDRAEELLNTAMTKATEYGK 206 (208)
T ss_dssp HTTCCEEEEEEEE------------CTTTC---------GGGHHHHHHHHHHHHHHHHH
T ss_pred hCCCCeeeEEEEc------------cccCC---------HHHHHHHHHHHHHHHHHHHh
Confidence 8899887532110 00000 11235678899999998875
No 29
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.54 E-value=9.6e-16 Score=127.05 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=86.7
Q ss_pred CCCCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHH
Q 031039 19 PPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQL 98 (167)
Q Consensus 19 ~~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l 98 (167)
+++.+..++ .+++.++|+||||||+|++++++.+|.|+|++.. ..++||++++|+++||. ++. +..+...|
T Consensus 288 ~~~~~~~~~-~~~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~----~~~~~k~~~~~~s~g~~-~~a---~~~l~~~l 358 (398)
T 1ycg_A 288 LSVSDRNDV-IKEILDARAVLVGSPTINNDILPVVSPLLDDLVG----LRPKNKVGLAFGAYGWG-GGA---QKILEERL 358 (398)
T ss_dssp GGGSCHHHH-HHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHH----HCCSSCEEEEEEEESSS-CCH---HHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHCCEEEEECCccCccchHHHHHHHHHHhc----cccCCCEEEEEEeCCCc-hHH---HHHHHHHH
Confidence 344444444 5678999999999999999999999999999842 35899999999999885 332 45788888
Q ss_pred HHcCcEEecCc-cccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031039 99 VHHGMIFVPIG-YTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 161 (167)
Q Consensus 99 ~~~g~~vv~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~ 161 (167)
...|+.+++.+ +.+ ...|++++++.++++|+++++.++
T Consensus 359 ~~~g~~~~~~~~~~~-------------------------~~~p~~~~~~~~~~~~~~l~~~~~ 397 (398)
T 1ycg_A 359 KAAKIELIAEPGPTV-------------------------QWVPRGEDLQRCYELGRKIAARIA 397 (398)
T ss_dssp HHTTCEESCSSCCEE-------------------------ESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCeEEecCceEEE-------------------------ecCCCHHHHHHHHHHHHHHHHHHh
Confidence 89999998754 431 235789999999999999998753
No 30
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.52 E-value=4.4e-15 Score=123.23 Aligned_cols=110 Identities=20% Similarity=0.163 Sum_probs=87.9
Q ss_pred CCCCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHH
Q 031039 19 PPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQL 98 (167)
Q Consensus 19 ~~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l 98 (167)
+++.+..++ .+++.+||+||||||+|++++++.++.|+|++. ...++||++++|++++|. + .++..+.+.|
T Consensus 289 ~~~~~~~~~-~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~----~~~l~~k~~~~f~t~g~~--~--~a~~~l~~~l 359 (402)
T 1e5d_A 289 CKACHHSQI-MSEISDAGAVIVGSPTHNNGILPYVAGTLQYIK----GLRPQNKIGGAFGSFGWS--G--ESTKVLAEWL 359 (402)
T ss_dssp TTTSCHHHH-HHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHH----HTCCCSCEEEEEEEESSS--C--HHHHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHCCEEEEECCccCCCchHHHHHHHHHhh----hcccCCCEEEEEEcCCCc--c--HHHHHHHHHH
Confidence 344444444 567899999999999999999999999999983 246899999999999874 2 3456888888
Q ss_pred HHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031039 99 VHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 162 (167)
Q Consensus 99 ~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~ 162 (167)
...|+.+++.++.+ ...|++++++.++++|++|++.++.
T Consensus 360 ~~~G~~~~~~~~~~-------------------------~~~p~~~~~~~~~~~~~~l~~~l~~ 398 (402)
T 1e5d_A 360 TGMGFDMPATPVKV-------------------------KNVPTHADYEQLKTMAQTIARALKA 398 (402)
T ss_dssp HHTTCBCCSCCEEE-------------------------ESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEecCceEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHhh
Confidence 89999998754431 2357899999999999999998765
No 31
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.51 E-value=7.9e-14 Score=105.31 Aligned_cols=80 Identities=21% Similarity=0.124 Sum_probs=63.1
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc---------ccCCCCCeEEEEEccCCCCCC--HHHHHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWR---------TQQLAGKPAGMFYSTGSQGGG--QETTALTAITQ 97 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~---------~~~l~gK~~~~f~s~g~~~gg--~~~~l~~l~~~ 97 (167)
.+++.+||+|||+||+||+++++.+|.||||+..... ...++||++++|+++|+..++ .......+...
T Consensus 81 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~ 160 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVF 160 (201)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHH
Confidence 5789999999999999999999999999999964211 135899999999998875333 12245567778
Q ss_pred HHHcCcEEecC
Q 031039 98 LVHHGMIFVPI 108 (167)
Q Consensus 98 l~~~g~~vv~~ 108 (167)
+..+|+.+++.
T Consensus 161 l~~~G~~~~~~ 171 (201)
T 1t5b_A 161 LGFIGITDVNF 171 (201)
T ss_dssp HHHTTCCCEEE
T ss_pred HhhcCcceeEE
Confidence 88889988854
No 32
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.50 E-value=7.5e-14 Score=105.18 Aligned_cols=71 Identities=23% Similarity=0.148 Sum_probs=60.8
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
.+++.+||+|||+||+||+++++.+|+|||++.. .++||++++|++ |+.+ + ..++..+...+..+||.+++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-----~l~gK~~~~~~~-G~~~-~-~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH-----EWHGKPALVVSY-GGHG-G-SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST-----TTTTCEEEEEEE-ETTT-T-HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh-----hcCCCEEEEEEe-CCcc-h-hhHHHHHHHHHHHCCCEEcc
Confidence 6899999999999999999999999999999842 589999999976 5543 3 34677888888899999997
No 33
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.48 E-value=2.8e-14 Score=103.24 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=78.6
Q ss_pred hhHHhh-CCEEEEeccccC-CC--chHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcE
Q 031039 29 PNELAE-ADGFVFGFPTRF-GM--MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 29 ~~~l~~-aD~iIigsPtY~-~~--~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
.+++.+ +|.|||++|+|+ +. +++.++.|+|++. ...++||++++|++++...++...+...+...|...|+.
T Consensus 42 ~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~----~~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~ 117 (147)
T 1f4p_A 42 AGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLE----ETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAE 117 (147)
T ss_dssp STTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGG----GSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCE
T ss_pred HHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHH----hcccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCe
Confidence 446788 999999999995 66 7899999999984 236899999999996654444556778899999999999
Q ss_pred EecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031039 105 FVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 159 (167)
Q Consensus 105 vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~ 159 (167)
++..++.+ ...|++ +++++++++++|++.
T Consensus 118 ~~~~~~~~-------------------------~~~p~~-~~~~~~~~~~~l~~~ 146 (147)
T 1f4p_A 118 IVQDGLRI-------------------------DGDPRA-ARDDIVGWAHDVRGA 146 (147)
T ss_dssp ECSCCEEE-------------------------ESCGGG-GHHHHHHHHHHHHTT
T ss_pred Ehhccccc-------------------------ccCchh-HHHHHHHHHHHHHhh
Confidence 98765431 123554 888999999998753
No 34
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=99.46 E-value=2.5e-13 Score=103.58 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=66.3
Q ss_pred CCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc-cc----ccCCCCCeEEEEEccCCCC------C----C
Q 031039 22 SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-WR----TQQLAGKPAGMFYSTGSQG------G----G 86 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~-~~----~~~l~gK~~~~f~s~g~~~------g----g 86 (167)
+|+... .+++.+||+|||++|+||+++|+.+|.|+||+... |. ...|+||++.+++|+|+.. + .
T Consensus 47 ~dv~~~-~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~ 125 (192)
T 3f2v_A 47 IDVAAE-QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCS 125 (192)
T ss_dssp CCHHHH-HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSC
T ss_pred hhHHHH-HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccC
Confidence 444444 78999999999999999999999999999998643 11 1478999999999988651 1 1
Q ss_pred HHHHHHHHHHHHHHcCcEEecCc
Q 031039 87 QETTALTAITQLVHHGMIFVPIG 109 (167)
Q Consensus 87 ~~~~l~~l~~~l~~~g~~vv~~~ 109 (167)
....+..+...+...||..++.-
T Consensus 126 ~~~~l~pl~~~~~f~G~~~~~~~ 148 (192)
T 3f2v_A 126 VAEVLRPFELTAKYCNADYRPPF 148 (192)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCE
T ss_pred HHHHHHHHHHHHHhCCCeEeeeE
Confidence 22334446677788999998753
No 35
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=99.45 E-value=1.2e-13 Score=104.05 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=67.5
Q ss_pred CCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc----cccCCCCCeEEEEEccCCCC-----C-----C
Q 031039 21 KSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW----RTQQLAGKPAGMFYSTGSQG-----G-----G 86 (167)
Q Consensus 21 ~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~----~~~~l~gK~~~~f~s~g~~~-----g-----g 86 (167)
++|+... .+++.+||.|||++|+||+++|+.+|.|+||+.... ..+.|+||++.+++|+|+.. + .
T Consensus 39 ~~D~~~~-~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~ 117 (177)
T 3ha2_A 39 DFNVEQE-QSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFT 117 (177)
T ss_dssp TCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSC
T ss_pred cccHHHH-HHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCC
Confidence 5566666 899999999999999999999999999999986431 13578999999999987641 1 1
Q ss_pred HHHHHHHHHHHHHHcCcEEecC
Q 031039 87 QETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 87 ~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
....+..+...+...||.+++.
T Consensus 118 ~~~~l~p~~~~~~~~G~~~~~~ 139 (177)
T 3ha2_A 118 ISELMRPFEAFANKTKMMYLPI 139 (177)
T ss_dssp HHHHTHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHHhCCCeEeCe
Confidence 2334445566777899999864
No 36
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=99.41 E-value=8.1e-13 Score=101.33 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=64.6
Q ss_pred CCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc-cc-------------------ccCCCCCeEEEEEccC
Q 031039 22 SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-WR-------------------TQQLAGKPAGMFYSTG 81 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~-~~-------------------~~~l~gK~~~~f~s~g 81 (167)
+|+..+ .++|.+||+|||++|+||+++|+++|.||||+... |. ...|+||++.+++++|
T Consensus 59 ~d~~~~-~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g 137 (204)
T 2amj_A 59 YDVKAE-VQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWN 137 (204)
T ss_dssp CCHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECS
T ss_pred ccHHHH-HHHHHhCCEEEEECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCC
Confidence 455555 89999999999999999999999999999997422 11 2358999999999987
Q ss_pred CCCC------------CHHHHHHHHHHHHHHcCcEEecC
Q 031039 82 SQGG------------GQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 82 ~~~g------------g~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
+..+ .....+..++..+..+||.+++.
T Consensus 138 ~~~~~y~~~g~~~~~~~~~~~l~~l~~~l~~~G~~~~~~ 176 (204)
T 2amj_A 138 APMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPT 176 (204)
T ss_dssp SCTHHHHCTTSSSCSCCHHHHTHHHHHHHHHTTCEECCC
T ss_pred CChHHHccCcccccCCCHHHHHHHHHHHHHHcCCeecce
Confidence 6421 11223334667778899998864
No 37
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=99.41 E-value=1.3e-12 Score=100.21 Aligned_cols=80 Identities=26% Similarity=0.228 Sum_probs=60.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-----c--------ccCCCCCeEEEEEccCCC--CC-CH----H
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW-----R--------TQQLAGKPAGMFYSTGSQ--GG-GQ----E 88 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~-----~--------~~~l~gK~~~~f~s~g~~--~g-g~----~ 88 (167)
.+++.+||+|||++|+||+++++.+|+||||+.... . .+.|+||++.+++++|.+ .+ +. .
T Consensus 82 ~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 161 (212)
T 3r6w_A 82 VGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMN 161 (212)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGGGC
T ss_pred HHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCchh
Confidence 578999999999999999999999999999996421 1 346899999999998732 11 11 1
Q ss_pred HHHHHHHHHHHHcCcEEecC
Q 031039 89 TTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 89 ~~l~~l~~~l~~~g~~vv~~ 108 (167)
.....++..|...|+..++.
T Consensus 162 ~~~~~l~~~l~~~G~~~~~~ 181 (212)
T 3r6w_A 162 HADPWLRTALGFIGIDEVTV 181 (212)
T ss_dssp CSHHHHHHHHHHHTCCEEEE
T ss_pred hhHHHHHHHHHHCCCceeEE
Confidence 12345677777889988854
No 38
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=99.40 E-value=1.7e-12 Score=100.94 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=78.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---c------ccCC-CCCeEEEEEccCCCCCC--H----HHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---R------TQQL-AGKPAGMFYSTGSQGGG--Q----ETTAL 92 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~---~------~~~l-~gK~~~~f~s~g~~~gg--~----~~~l~ 92 (167)
.+++.+||+|||++|+||+++++.+|+||||+.... . .+.+ +||++.+++++|+..++ . .....
T Consensus 89 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~~~~~~ 168 (223)
T 3u7i_A 89 LQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHK 168 (223)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHTCHHHH
T ss_pred HHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchHHHHHH
Confidence 789999999999999999999999999999997531 1 1346 89999999998775432 1 12345
Q ss_pred HHHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031039 93 TAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 160 (167)
Q Consensus 93 ~l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~ 160 (167)
.++..|..+|+..+..-+.. |. ...+.++.+++|++-++.+++..
T Consensus 169 ~l~~~l~~~G~~~~~~i~~~------------g~-----------~~~~~~~~~~~a~~~~~~~~~~f 213 (223)
T 3u7i_A 169 YLKAMFNFLGIEDYQIVRAQ------------GT-----------AVLDPTEVLQNAYKEVEEAASRL 213 (223)
T ss_dssp HHHHHHHHHTCCEEEEEEEC------------CT-----------TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCceeEEEEEc------------Cc-----------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 67777778899888632211 00 11235677888888877777654
No 39
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=99.38 E-value=1e-12 Score=101.15 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=61.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---------cccCCCCCeEEEEEccCCCCCCH-----HHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---------RTQQLAGKPAGMFYSTGSQGGGQ-----ETTALTA 94 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~---------~~~~l~gK~~~~f~s~g~~~gg~-----~~~l~~l 94 (167)
.+++.+||+|||++|+||+++++.+|+||||+.... ..+.|+||++.+++++|+..++. ......+
T Consensus 87 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~l 166 (211)
T 3p0r_A 87 LNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYV 166 (211)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBSHHHH
T ss_pred HHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHHHHHH
Confidence 678999999999999999999999999999986431 12368999999999887664321 1223466
Q ss_pred HHHHHHcCcEEecC
Q 031039 95 ITQLVHHGMIFVPI 108 (167)
Q Consensus 95 ~~~l~~~g~~vv~~ 108 (167)
+..|..+|+..+..
T Consensus 167 ~~~l~~~G~~~v~~ 180 (211)
T 3p0r_A 167 ASMMGFFGATNMET 180 (211)
T ss_dssp HHHHHHTTCCSCEE
T ss_pred HHHHHhCCCCeeeE
Confidence 77777889887753
No 40
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=99.37 E-value=1.4e-12 Score=99.31 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=60.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---c------ccCCCCCeEEEEEccCCC--CC----CHHHHHHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---R------TQQLAGKPAGMFYSTGSQ--GG----GQETTALT 93 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~---~------~~~l~gK~~~~f~s~g~~--~g----g~~~~l~~ 93 (167)
.+++.+||+|||++|+||+++|+.+|+||||+.... . .+.|+||++.+++|+|+. .. +.. . ..
T Consensus 68 ~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~-~-~~ 145 (196)
T 3lcm_A 68 RDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYG-K-VL 145 (196)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTT-H-HH
T ss_pred HHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCH-H-HH
Confidence 789999999999999999999999999999996431 1 136899999999998865 10 111 1 45
Q ss_pred HHHHHHHcCcEEecC
Q 031039 94 AITQLVHHGMIFVPI 108 (167)
Q Consensus 94 l~~~l~~~g~~vv~~ 108 (167)
++..+...||..++.
T Consensus 146 l~~~l~~~G~~~~~~ 160 (196)
T 3lcm_A 146 KKQILKPCAISPVKL 160 (196)
T ss_dssp HHHTTGGGTCCCEEE
T ss_pred HHHHHHhcCCceeeE
Confidence 666667789887754
No 41
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.32 E-value=4.1e-12 Score=107.02 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=83.0
Q ss_pred CCCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-----cccCCCCCeEEEEEccCCCCC--------CH
Q 031039 21 KSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW-----RTQQLAGKPAGMFYSTGSQGG--------GQ 87 (167)
Q Consensus 21 ~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~-----~~~~l~gK~~~~f~s~g~~~g--------g~ 87 (167)
++|+... .+++.+||+|||++|+||+++|+.+|.||||+.... ....|+||++.+++++|+..+ +.
T Consensus 280 ~~d~~~~-~~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~ 358 (413)
T 3l9w_A 280 NIDIAAE-QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGF 358 (413)
T ss_dssp CCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSG
T ss_pred cHHHHHH-HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCc
Confidence 3455555 899999999999999999999999999999996432 123589999999988775321 11
Q ss_pred HHHHHHHHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031039 88 ETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 162 (167)
Q Consensus 88 ~~~l~~l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~ 162 (167)
...+..+...+...||.++++-+. +|. ....+++..+.++++.++|.+.+.+
T Consensus 359 ~~~l~~l~~~~~~~G~~~l~~~~~----------------~g~-------~~~~d~~~~~~~~~~~~~L~~~~~~ 410 (413)
T 3l9w_A 359 DVLSQPLQATAIYCGLNWLPPFAM----------------HCT-------FICDDETLEGQARHYKQRLLEWQEA 410 (413)
T ss_dssp GGGGHHHHHHHHHTTCEECCCEEE----------------CCS-------TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCeecceEEE----------------cCC-------CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 123456677778899999864322 111 1123345567788888888877653
No 42
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.30 E-value=1.6e-11 Score=90.68 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=83.0
Q ss_pred ChhHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCC-CC-CHHHHHHHHHHHHHHcCcE
Q 031039 28 TPNELAEADGFVFGFPTRF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALTAITQLVHHGMI 104 (167)
Q Consensus 28 ~~~~l~~aD~iIigsPtY~-~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~g-g~~~~l~~l~~~l~~~g~~ 104 (167)
+.+++.++|.||||+|||+ +.+++.++.|++++. ...++||++++|++++.. .+ +...++..+...|...|+.
T Consensus 40 ~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~----~~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~ 115 (169)
T 1czn_A 40 DASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLD----SVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQ 115 (169)
T ss_dssp CGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGG----GSCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCE
T ss_pred CHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHhh----hhccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 3568999999999999998 679999999999883 357899999999998653 33 3456778899898889999
Q ss_pred EecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031039 105 FVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 160 (167)
Q Consensus 105 vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~ 160 (167)
+++.....+..+.....+..|...|. .. ++ ..+++++.++++++++.+.+.+
T Consensus 116 ~~~~~~~~g~~~~~s~~~~~~~~~gl-~~--~~-~~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 116 TVGYWPIEGYDFNESKAVRNNQFVGL-AI--DE-DNQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp ECCCEECTTCCCSCCTTEETTEESSE-EE--CT-TTCGGGHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCcceecchheeCCeeeee-ee--cC-CCccccCHHHHHHHHHHHHHHh
Confidence 98731111110000000000011111 11 11 2356778999999999887653
No 43
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.28 E-value=4e-11 Score=88.46 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=82.6
Q ss_pred CCChhHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCC-CC-CHHHHHHHHHHHHHHcC
Q 031039 26 IITPNELAEADGFVFGFPTRF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALTAITQLVHHG 102 (167)
Q Consensus 26 ~~~~~~l~~aD~iIigsPtY~-~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~g-g~~~~l~~l~~~l~~~g 102 (167)
+...+++.++|.||||+|||+ +.++..++.|++++. ...++||++++|++++.. .+ ....++..+...|...|
T Consensus 38 ~~~~~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~----~~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g 113 (169)
T 1obo_A 38 QAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELD----DVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRG 113 (169)
T ss_dssp TCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGG----GCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTT
T ss_pred cCCHHHHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhh----hcCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCC
Confidence 334578999999999999996 677788999999983 347899999999998752 23 34567788999998999
Q ss_pred cEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031039 103 MIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 160 (167)
Q Consensus 103 ~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~ 160 (167)
+.+++.-...+..+.....+..+...|. .. + ...+++.+.++++.+++.+.+.+
T Consensus 114 ~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~--~-~~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 114 GKTVGYWSTDGYDFNDSKALRNGKFVGL-AL--D-EDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp CEECCCEECTTCCCSCCTTEETTEESSE-EE--C-TTTCGGGHHHHHHHHHHHHHHHH
T ss_pred CEEEEeecCCCcccccchhhcCCceeeE-Ee--e-CCCccccCHHHHHHHHHHHHHHh
Confidence 9998752211111000000000111111 11 1 11245677888999998887654
No 44
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=99.23 E-value=2.5e-11 Score=94.21 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=64.1
Q ss_pred CCCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc-cc-------------------ccCCCCCeEEEEEccC
Q 031039 22 SDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-WR-------------------TQQLAGKPAGMFYSTG 81 (167)
Q Consensus 22 ~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~-~~-------------------~~~l~gK~~~~f~s~g 81 (167)
+|+... .+++.+||+|||++|+||+++++.+|.|+||+... |. .+.|+||++.++.|.|
T Consensus 72 ~Dv~~~-~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G 150 (218)
T 3rpe_A 72 YDIESE-IENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWN 150 (218)
T ss_dssp CCHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECS
T ss_pred cCHHHH-HHHHHhCCEEEEECChHhccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCC
Confidence 444444 89999999999999999999999999999998532 11 2358999999999988
Q ss_pred CCC-----C-----C--HHHHHHHHHHHHHHcCcEEecC
Q 031039 82 SQG-----G-----G--QETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 82 ~~~-----g-----g--~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
.+. + + ....+..+...+...||..++.
T Consensus 151 ~p~~~y~~~g~~~~g~~~~~~l~p~~~~l~f~G~~~l~~ 189 (218)
T 3rpe_A 151 APREAFTDPEQFFHGVGVDGVYLPFHKANQFLGMKPLPT 189 (218)
T ss_dssp SCTHHHHCTTSTTTTCHHHHHTHHHHHHHHHTTCEECCC
T ss_pred CChHhhcccccccccCCHHHHHHHHHHHHHhCCCEEece
Confidence 652 1 1 1112233566777899999864
No 45
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=99.23 E-value=1.8e-11 Score=97.67 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=58.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc---------ccCCCCCeEEEEEccCCCC-----CCH----HHH
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWR---------TQQLAGKPAGMFYSTGSQG-----GGQ----ETT 90 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~---------~~~l~gK~~~~f~s~g~~~-----gg~----~~~ 90 (167)
.++|.+||+|||++|+||+++++.+|.||||+..... ...|+||++.+++|+|+.. ++. ...
T Consensus 88 ~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~g~~~~~~~~ 167 (273)
T 1d4a_A 88 QKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVI 167 (273)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTBTTCCHHHH
T ss_pred HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhcccccCCCHHHH
Confidence 5679999999999999999999999999999865321 2468999999999987641 111 111
Q ss_pred HHHHH-HHHHHcCcEEecC
Q 031039 91 ALTAI-TQLVHHGMIFVPI 108 (167)
Q Consensus 91 l~~l~-~~l~~~g~~vv~~ 108 (167)
+..+. ..|...|+.+++.
T Consensus 168 ~~~~~~~~l~~~G~~~~~~ 186 (273)
T 1d4a_A 168 LWPIQSGILHFCGFQVLEP 186 (273)
T ss_dssp HHHHHTTTTGGGTCEECCC
T ss_pred HHHHHHHHHHhCCCeeeeE
Confidence 22222 2455778888753
No 46
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.20 E-value=9.5e-11 Score=87.65 Aligned_cols=128 Identities=18% Similarity=0.119 Sum_probs=84.0
Q ss_pred CCCCChhHHhhCCEEEEeccccC-CCch--------HHHHHHHHHhcCcccccCCCCCeEEEEEccCCC-CC-CHHHHHH
Q 031039 24 VPIITPNELAEADGFVFGFPTRF-GMMA--------AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTAL 92 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~-~~~~--------~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~g-g~~~~l~ 92 (167)
+.+.+.+++.++|.||||+|||+ +.++ ..++.|++++. ...++||++++|++++.. .+ ....++.
T Consensus 36 ~~~~~~~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~l~----~~~l~gk~~a~fg~g~~~~y~~~~~~a~~ 111 (179)
T 1yob_A 36 VNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLPKIE----GLDFSGKTVALFGLGDQVGYPENYLDALG 111 (179)
T ss_dssp GGGCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHHHT----TCCCTTCEEEEEEECCTTTCTTTTTHHHH
T ss_pred hhhCCHHHHhcCCEEEEEeccCCCCcCCcccccccchHHHHHHHHhh----hcccCCCEEEEEEECCCcchhHHHHHHHH
Confidence 33444678999999999999999 8899 89999999983 347899999999997653 22 2346677
Q ss_pred HHHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031039 93 TAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 159 (167)
Q Consensus 93 ~l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~ 159 (167)
.+...|...|+.+++.....++.+.....+..+...|. .. +. ..+++...++++.+.+.|...
T Consensus 112 ~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~gl-~~--d~-~~~~~~~~~~i~~w~~~l~~~ 174 (179)
T 1yob_A 112 ELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGL-AL--DL-DNQSGKTDERVAAWLAQIAPE 174 (179)
T ss_dssp HHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSE-EE--CT-TTCGGGHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHCCCEEEEeeccCCCCcccchhhhcCceecc-cc--CC-CCCCcccHHHHHHHHHHHHHH
Confidence 88888888999999754332222111111111111121 11 11 123356778888888877543
No 47
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.20 E-value=4.2e-11 Score=88.68 Aligned_cols=107 Identities=9% Similarity=-0.096 Sum_probs=79.7
Q ss_pred CCChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcE
Q 031039 26 IITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 26 ~~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
+.+.+++.++|.||||+||| ++.++..++.|++.+... ....++||++++|++++...++.......+...|...|+.
T Consensus 48 ~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~-~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~ 126 (167)
T 1ykg_A 48 DYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGE 126 (167)
T ss_dssp GCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTST-TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCE
T ss_pred hCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhc-cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 34456788999999999999 789999999999998421 1136899999999975433333445677888888889998
Q ss_pred EecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031039 105 FVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 162 (167)
Q Consensus 105 vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~ 162 (167)
++.+... .++++.+.+++++++|++.++.
T Consensus 127 ~v~~~~~-----------------------------~d~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 127 RLLDRVD-----------------------------ADVEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp ESSCCEE-----------------------------ECTTCHHHHHHHHHHHHHHHHT
T ss_pred Eeeccee-----------------------------cCCCcHHHHHHHHHHHHHHHHh
Confidence 8865422 1234577888999998887654
No 48
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=99.19 E-value=8e-11 Score=91.77 Aligned_cols=55 Identities=27% Similarity=0.313 Sum_probs=47.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---------cccCCCCCeEEEEEccCCC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---------RTQQLAGKPAGMFYSTGSQ 83 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~---------~~~~l~gK~~~~f~s~g~~ 83 (167)
.+++.+||+|||++|+||+++++.+|.|||++.... ..+.|+||++.+++|+|+.
T Consensus 87 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 87 QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 678999999999999999999999999999986431 1257899999999888754
No 49
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.19 E-value=2.1e-10 Score=85.46 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=83.8
Q ss_pred CChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCC-C-CHHHHHHHHHHHHHHcCc
Q 031039 27 ITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG-G-GQETTALTAITQLVHHGM 103 (167)
Q Consensus 27 ~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~-g-g~~~~l~~l~~~l~~~g~ 103 (167)
...+++.++|.||||+||| .+.+++.++.|++.+. ...++||++++|++++..+ + ....++..+.+.|...|+
T Consensus 38 ~~~~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~----~~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~ 113 (175)
T 1ag9_A 38 SSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLE----EIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGA 113 (175)
T ss_dssp CCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHT----TCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTC
T ss_pred CChhHhhhCCEEEEEEeecCCCcChHHHHHHHhhhh----hcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCC
Confidence 3467899999999999997 5888899999999983 3478999999999965431 1 124677889889889999
Q ss_pred EEecCccccCCCcccccccc-cCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031039 104 IFVPIGYTFGAGMFEMEKVK-GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 161 (167)
Q Consensus 104 ~vv~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~ 161 (167)
.+++.....++.+.....+. .+...|. .. + ...+++.+.+++.++++.|.+.+.
T Consensus 114 ~~v~~~~~~g~~~~~s~~~~~~~~~~gl-~~--~-~~~~~~~~~~~i~~w~~~i~~~~~ 168 (175)
T 1ag9_A 114 TIVGHWPTAGYHFEASKGLADDDHFVGL-AI--D-EDRQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp EECCCEECTTCCCSCCSCEEETTEESSE-EE--C-TTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCCcccccchheeeCCeEEee-ec--C-CCCcccccHHHHHHHHHHHHHHhh
Confidence 99974322221111000000 0011111 11 1 123556788999999999877653
No 50
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.19 E-value=1.3e-10 Score=86.37 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=81.2
Q ss_pred ChhHHhhCCEEEEeccccC-CCc----hHHHHHHH-HHhcCcccccCCCCCeEEEEEccCCCC--CCHHHHHHHHHHHHH
Q 031039 28 TPNELAEADGFVFGFPTRF-GMM----AAQFKAFL-DATGGLWRTQQLAGKPAGMFYSTGSQG--GGQETTALTAITQLV 99 (167)
Q Consensus 28 ~~~~l~~aD~iIigsPtY~-~~~----~~~~k~fl-Drl~~~~~~~~l~gK~~~~f~s~g~~~--gg~~~~l~~l~~~l~ 99 (167)
..+++.++|.||||+|||+ +.+ +..++.|+ +++. ...++||++++|++++..+ .....++..+...|.
T Consensus 39 ~~~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~----~~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~ 114 (173)
T 2fcr_A 39 DPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLP----EVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFA 114 (173)
T ss_dssp CGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGG----GCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHH
T ss_pred ChhHHccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhcc----ccccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHH
Confidence 3578899999999999999 899 89999999 9883 3578999999999976531 123356778888888
Q ss_pred HcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031039 100 HHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 160 (167)
Q Consensus 100 ~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~ 160 (167)
..|+.+++.....++.+.....+..+...|. .... ...++...++++++.+.+.+.+
T Consensus 115 ~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~~~---~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 115 KQGAKPVGFSNPDDYDYEESKSVRDGKFLGL-PLDM---VNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp HTTCEEECCBCGGGSCCSCCTTEETTEESSE-EEET---TTCSSCHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEeecccCCcccccchhhhCCeeeee-eecC---CCCccccHHHHHHHHHHHHHHh
Confidence 8999999753332222111111111111221 1111 1123346777778887776543
No 51
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.18 E-value=1e-10 Score=86.41 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=56.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
..++.+||.||||+|+|++++++.++.|++++ .++||++++|+++||++ ...++..+...+. +..++
T Consensus 73 ~~~l~~yd~iilG~P~~~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~--~g~~~~~l~~~l~--~~~~~ 139 (162)
T 3klb_A 73 LFHPEKYEVLFVGFPVWWYIAPTIINTFLESY-------DFAGKIVVPFATSGGSG--IGNCEKNLHKAYP--DIVWK 139 (162)
T ss_dssp CSCGGGCSEEEEEEECBTTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSCC--SHHHHHHHHHHCT--TSEEC
T ss_pred ccChhhCCEEEEEcccccCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCCC--ccHHHHHHHHHcC--CCEee
Confidence 56899999999999999999999999999986 57999999999999863 2355667777664 56665
No 52
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.12 E-value=1.3e-10 Score=86.97 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=82.3
Q ss_pred CCCChhHHhhCCEEEEeccccC-CCch--------HHHHHHHHHhcCcccccCCCCCeEEEEEccCCC-CC-CHHHHHHH
Q 031039 25 PIITPNELAEADGFVFGFPTRF-GMMA--------AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALT 93 (167)
Q Consensus 25 ~~~~~~~l~~aD~iIigsPtY~-~~~~--------~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~g-g~~~~l~~ 93 (167)
.+...+++.++|.||||+|||+ +.++ ..++.|++++. ...++||++++|++++.. .+ ....+...
T Consensus 38 ~~~~~~~l~~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~~~l~----~~~l~gk~~avfg~g~~~~~~~~f~~a~~~ 113 (182)
T 2wc1_A 38 NRADVADFMAYDFLILGTPTLGDGQLPGLSANAASESWEEFLPRIA----DQDFSGKTIALFGLGDQVTYPLEFVNALFF 113 (182)
T ss_dssp GGCCHHHHHHCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHGGGGT----TCCCTTCEEEEEEECCTTTCTTSTTTHHHH
T ss_pred ccCCHHHHhhCCeEEEEEeeCCCCCCCccccccchhHHHHHHHHhh----hccCCCCEEEEEEeCCCcccchhHHHHHHH
Confidence 3444678999999999999999 8888 78999999983 347899999999997642 21 23456678
Q ss_pred HHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031039 94 AITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 161 (167)
Q Consensus 94 l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~ 161 (167)
+...|...|+.+++.....++.+.....+..+...|. .. +.. ..++...++++.+.+.|.+.+.
T Consensus 114 l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl-~~--d~~-~~~~~~~~~~~~w~~~l~~~l~ 177 (182)
T 2wc1_A 114 LHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGL-AL--DQD-NQAALTPERLKGWLSLIAADFG 177 (182)
T ss_dssp HHHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSE-EE--CTT-TCGGGHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHCCCEEEEeecCCCcCcccchhhhcCceeee-ec--cCC-CCccccHHHHHHHHHHHHHHHh
Confidence 8888888999999753322221110000100111121 01 111 1123467788888888876653
No 53
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.05 E-value=2.2e-11 Score=88.12 Aligned_cols=101 Identities=11% Similarity=0.037 Sum_probs=73.7
Q ss_pred hhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEE----ccCCCCCCHHHHHHHHHHHHHHcCc
Q 031039 29 PNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY----STGSQGGGQETTALTAITQLVHHGM 103 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~----s~g~~~gg~~~~l~~l~~~l~~~g~ 103 (167)
.+++.++|.||||+||| ++.+++.++.|++.+... ...++||++++|+ +++|.... ...+...|...|+
T Consensus 41 ~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~--~~~l~~~~~avfg~G~~~y~~~~~a----~~~l~~~l~~~G~ 114 (147)
T 2hna_A 41 LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQ--KPDLSAVRFGAIGIGSREYDTFCGA----IDKLEAELKNSGA 114 (147)
T ss_dssp SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHH--CCCTTEEEEEEESCCHHHHSCSSSC----TTHHHHHHHHHTC
T ss_pred HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhh--ccccCCCEEEEEecccCCHHHHHHH----HHHHHHHHHHcCC
Confidence 45678899999999999 899999999999998321 1268999999999 45454333 2367778888899
Q ss_pred EEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031039 104 IFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 160 (167)
Q Consensus 104 ~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~ 160 (167)
.++.+...+ ...++++..+.++++++++++.+
T Consensus 115 ~~~~~~~~~-------------------------d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 115 KQTGETLKI-------------------------NILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp EECSSCBCC-------------------------CCSSCCSSCSCCHHHHHHHHHHH
T ss_pred eEeeeeEEE-------------------------ecCCCCCcHHHHHHHHHHHHHHh
Confidence 998765432 12244456677788888877654
No 54
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.05 E-value=5e-10 Score=83.47 Aligned_cols=67 Identities=15% Similarity=0.307 Sum_probs=55.6
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
..++.+||.||||+|+|++++++.++.|++++ .++||++++|+++||.+ ...++..+...+. +..+.
T Consensus 82 ~~~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~--~g~a~~~l~~~l~--~~~~~ 148 (171)
T 4ici_A 82 KENIGTYDVVFIGYPIWWDLAPRIINTFIEGH-------SLKGKTVVPFATSGGSS--IGNSATVLKKTYP--DLNWK 148 (171)
T ss_dssp CTTGGGCSEEEEEEECBTTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSCC--SHHHHHHHHHHST--TSEEC
T ss_pred cccHhHCCEEEEecccccCCchHHHHHHHHHc-------CCCcCEEEEEEecCCCC--cchHHHHHHHHcC--CCeec
Confidence 46789999999999999999999999999997 57999999999998753 3356677777664 55554
No 55
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=3.1e-10 Score=91.09 Aligned_cols=55 Identities=25% Similarity=0.328 Sum_probs=46.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-----------------cccCCCCCeEEEEEccCCC
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW-----------------RTQQLAGKPAGMFYSTGSQ 83 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~-----------------~~~~l~gK~~~~f~s~g~~ 83 (167)
.+++.+||.|||++|+||+++++.+|.|+||+.... ..+.|+||++.++.|.|+.
T Consensus 107 ~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~ 178 (280)
T 4gi5_A 107 QEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGW 178 (280)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEEeccccccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCC
Confidence 678999999999999999999999999999985321 1235789999999888754
No 56
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.00 E-value=2.1e-10 Score=83.57 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=53.4
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..++.+||+||||+|+|++++++.++.|+|++ ..+.+|++++|+++||..| .++..+.+.+. +..+++
T Consensus 71 ~~~l~~~d~iilG~P~~~g~~~~~~~~fl~~~------~~~~~k~~~~~t~gg~~~g---~~~~~l~~~~~--~~~~~~ 138 (151)
T 3edo_A 71 NIDYNNYDLILIGSPVWSGYPATPIKTLLDQM------KNYRGEVASFFTSAGTNHK---AYVSHFNEWAD--GLNVIG 138 (151)
T ss_dssp CCCGGGCSEEEEEEEEETTEECTHHHHHHHHT------TTCCSEEEEEEECSSCCHH---HHHHHHHHHTT--TSEEEE
T ss_pred hhCHhhCCEEEEEcceecccccHHHHHHHHhc------hhcCCEEEEEEEeCCCCCC---cHHHHHHHHcC--CCeeec
Confidence 56899999999999999999999999999997 2568899999999887532 33456666553 555553
No 57
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=98.91 E-value=6.1e-10 Score=84.57 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=75.3
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCC-CHHHHHHHHHHHHHHcCcEEecC
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG-GQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g-g~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
+++.++|.||||+|||++.++..++.|++.+... ....|+||++++|+++....+ +.......+.+.|...|+.++.+
T Consensus 63 ~~l~~~d~vi~g~~Ty~G~~p~~~~~fl~~L~~~-~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~ 141 (191)
T 1bvy_F 63 GNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQA-SADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIAD 141 (191)
T ss_dssp TCCCSSSEEEEEECCBTTBCCTTTHHHHHHHHTC-CSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEE
T ss_pred hhhhhCCeEEEEEeecCCCcCHHHHHHHHHHHhc-cchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeec
Confidence 3678899999999999999999999999998432 123589999999997633222 22345668888888899988765
Q ss_pred ccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHH-HHHHHHHHHHHHH
Q 031039 109 GYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQ-AFHQGKHIAGIAK 161 (167)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~-a~~lG~~la~~~~ 161 (167)
...+ .. +++++. ++++++.|++.+.
T Consensus 142 ~~~~-------------------------d~---~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 142 RGEA-------------------------DA---SDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp EEEE-------------------------ET---TSCHHHHHHHHHHHHHHHHH
T ss_pred cEEE-------------------------ec---CCChHHHHHHHHHHHHHHhc
Confidence 4321 11 234555 8888988888765
No 58
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=98.87 E-value=1.7e-09 Score=79.52 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=73.5
Q ss_pred CCChhHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCC-CCC-HHHHHHHHHHHHHHcC
Q 031039 26 IITPNELAEADGFVFGFPTRF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GGG-QETTALTAITQLVHHG 102 (167)
Q Consensus 26 ~~~~~~l~~aD~iIigsPtY~-~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~-~gg-~~~~l~~l~~~l~~~g 102 (167)
+.+..++.++|.||||+|||+ +.++..++.|++.+. ...|+||++++|++++.. +++ ...+...+.+.|..
T Consensus 36 ~~~~~~l~~~d~ii~g~pt~~~g~~p~~~~~f~~~l~----~~~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~-- 109 (164)
T 2bmv_A 36 KASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLE----ASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA-- 109 (164)
T ss_dssp GCCHHHHTTCSEEEEEEEEETTTEECHHHHHHHTTCC----THHHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--
T ss_pred cCCHhHHhhCCEEEEEECCcCCCcCcHHHHHHHHHHh----hhhcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--
Confidence 334678999999999999997 667888999999873 235789999999984331 221 22345577777655
Q ss_pred cEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031039 103 MIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 159 (167)
Q Consensus 103 ~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~ 159 (167)
+.+++.....++.+.....+..+...+ ... + ...+++++.++++++++++.+.
T Consensus 110 ~~~~~~~~~~g~~~~~s~~~~~~~~~~-l~~--~-~~~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 110 GKVVGQTSTDGYHFEASKAVEGGKFVG-LVI--D-EDNQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp SEECCCEESTTCCCSCCTTEETTEESS-EEE--C-TTTCGGGHHHHHHHHHHHHTTT
T ss_pred CEEEccccCCCccccchhhhhcCcccC-ccC--C-CCCccccCHHHHHHHHHHHHHh
Confidence 677654211111110000010000001 111 1 1223356799999999988653
No 59
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=98.56 E-value=1.4e-07 Score=65.76 Aligned_cols=85 Identities=16% Similarity=0.069 Sum_probs=58.3
Q ss_pred hCCEEEEeccccC-CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCC-HHHHHHHHHHHHHHcCcEEecCccc
Q 031039 34 EADGFVFGFPTRF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG-QETTALTAITQLVHHGMIFVPIGYT 111 (167)
Q Consensus 34 ~aD~iIigsPtY~-~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg-~~~~l~~l~~~l~~~g~~vv~~~~~ 111 (167)
.+|.||||+|||+ +.++..++.|++. +++|.+++|++++...+. .......+.+.+. ... .+.
T Consensus 32 ~~~~ii~g~pt~~~g~~p~~~~~fl~~---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~---~~~ 96 (119)
T 2xod_A 32 IDEDFILITYTTGFGNVPERVLEFLER---------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPI---VSK 96 (119)
T ss_dssp CCSCEEEEECCBTTTBCCHHHHHHHHH---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCE---EEE
T ss_pred cCCCEEEEEeecCCCcCCHHHHHHHHH---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---Ccc---EEE
Confidence 5999999999995 8999999999986 367899999986432121 1233445554432 111 111
Q ss_pred cCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 112 FGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 112 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
+ ...|+++++++++++++++++
T Consensus 97 ----------~---------------~~~~~~~d~~~~~~~~~~i~~ 118 (119)
T 2xod_A 97 ----------F---------------ELSGTNNDVEYFKERVREIAT 118 (119)
T ss_dssp ----------E---------------ETTCCHHHHHHHHHHHHHHTC
T ss_pred ----------E---------------ecCCCHHHHHHHHHHHHHhcc
Confidence 1 245889999999999998753
No 60
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=98.48 E-value=4.6e-07 Score=80.62 Aligned_cols=113 Identities=18% Similarity=-0.031 Sum_probs=83.3
Q ss_pred CCCCCChhHHhhC-CEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHH
Q 031039 23 DVPIITPNELAEA-DGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH 100 (167)
Q Consensus 23 d~~~~~~~~l~~a-D~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~ 100 (167)
++++.+.+++.++ |.|||++||| +|.++..++.|++.+.... ...|+||++++||.+....+........+.+.|..
T Consensus 86 ~l~~~~~~~l~~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~ 164 (682)
T 2bpo_A 86 DVENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSA 164 (682)
T ss_dssp ETTSSCGGGGGGCCSEEEEEEECBTTTBCCSSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHH
T ss_pred ehHHCCHHHHhhcCCeEEEEeCccCCCCCCHHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHH
Confidence 4445556778899 9999999999 8999999999999985421 23589999999996544334445566788889999
Q ss_pred cCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031039 101 HGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 162 (167)
Q Consensus 101 ~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~~~~ 162 (167)
.|++.+.+...+ | ..+ .+..+.++.+++.|...+..
T Consensus 165 lGa~~l~~~~~~-----------------------D--~~~-~~~~~~~~~W~~~l~~~l~~ 200 (682)
T 2bpo_A 165 AGAIRLGKLGEA-----------------------D--DGA-GTTDEDYMAWKDSILEVLKD 200 (682)
T ss_dssp TTCEECSCCEEE-----------------------E--TTT-TCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEeECcEEE-----------------------e--cCC-cccHHHHHHHHHHHHHHHHh
Confidence 999998764331 1 122 34567788888888777644
No 61
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=98.47 E-value=4.6e-07 Score=70.14 Aligned_cols=85 Identities=13% Similarity=-0.140 Sum_probs=65.9
Q ss_pred CCCCChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcC
Q 031039 24 VPIITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHG 102 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g 102 (167)
+++.+.+++.+++.+||++||| .|.++..++.|++.+... ...++|+.+++||.+.+..+........+.+.|...|
T Consensus 76 l~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lG 153 (219)
T 3hr4_A 76 MDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLG 153 (219)
T ss_dssp GGGCCGGGGGTCSEEEEEEECBTTTBCCGGGHHHHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHT
T ss_pred cccCCHhHhccCCeEEEEEeccCCCcCCHHHHHHHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCC
Confidence 3444467788999999999999 788898899999988421 2357999999999876554444456678888888899
Q ss_pred cEEecCcc
Q 031039 103 MIFVPIGY 110 (167)
Q Consensus 103 ~~vv~~~~ 110 (167)
+..+.+..
T Consensus 154 a~~l~~~g 161 (219)
T 3hr4_A 154 ASQLTPMG 161 (219)
T ss_dssp CEESSCCE
T ss_pred CCEeeCCE
Confidence 99887643
No 62
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=97.89 E-value=2e-05 Score=69.34 Aligned_cols=73 Identities=15% Similarity=0.020 Sum_probs=57.1
Q ss_pred hCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecC
Q 031039 34 EADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 34 ~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~ 108 (167)
+++.+||++||| +|.++..++.|++.+... ...|+||.+++||.+....++.......+.+.|...|+..+.+
T Consensus 70 ~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~ 143 (618)
T 3qe2_A 70 DNALVVFCMATYGEGDPTDNAQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFE 143 (618)
T ss_dssp TTCEEEEEEECBGGGBCCGGGHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred cCcEEEEEcCccCCCCCCHHHHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeec
Confidence 589999999999 899999999999998421 1579999999999544333334445567888888899988764
No 63
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=97.84 E-value=5.3e-05 Score=67.46 Aligned_cols=111 Identities=14% Similarity=-0.161 Sum_probs=77.1
Q ss_pred CCCChhHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccc--------------------------------------
Q 031039 25 PIITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWR-------------------------------------- 65 (167)
Q Consensus 25 ~~~~~~~l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~-------------------------------------- 65 (167)
++.+..++..++.+||++||| +|.++..++.|++.+.....
T Consensus 48 ~~~d~~~l~~~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 127 (688)
T 1tll_A 48 EEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNF 127 (688)
T ss_dssp TTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC-------------------
T ss_pred ccCChhHhccCceEEEEEcccCCCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccc
Confidence 333455667899999999999 89999999999998753200
Q ss_pred --ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEecCccccCCCcccccccccCCCCccceecCCCCCCCCH
Q 031039 66 --TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTE 143 (167)
Q Consensus 66 --~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 143 (167)
...|+|+.+++||.+.............+.+.|...|++.+.+.... |. . .
T Consensus 128 ~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~rl~~~~~~-----------------------D~--~--~ 180 (688)
T 1tll_A 128 ESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREG-----------------------DE--L--C 180 (688)
T ss_dssp ---CTTTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEE-----------------------ET--T--T
T ss_pred cccccCCCCeEEEEeeccCchHHHHHHHHHHHHHHHHcCCceeecceee-----------------------cc--C--C
Confidence 12589999999996643333334455688888889999888654321 11 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031039 144 LELEQAFHQGKHIAGIAKK 162 (167)
Q Consensus 144 e~l~~a~~lG~~la~~~~~ 162 (167)
++.+.++.+++.+.+.+..
T Consensus 181 g~e~~f~~W~~~~~~~l~~ 199 (688)
T 1tll_A 181 GQEEAFRTWAKKVFKAACD 199 (688)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 3456688888888877643
No 64
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=97.16 E-value=0.001 Score=47.60 Aligned_cols=88 Identities=18% Similarity=0.111 Sum_probs=57.5
Q ss_pred HhhCCEEEEecccc-CCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCC-HHHHHHHHHHHHHHcCcEEecCc
Q 031039 32 LAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG-QETTALTAITQLVHHGMIFVPIG 109 (167)
Q Consensus 32 l~~aD~iIigsPtY-~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg-~~~~l~~l~~~l~~~g~~vv~~~ 109 (167)
+...|.+||++||| .+.+|..+..|++.. .++..++++++....+. ...+...+.. ..++.+.. .
T Consensus 41 ~~~~~~~ilv~pTyG~G~~P~~v~~Fl~~~---------~~~~~~V~g~Gd~~yg~~f~~a~~~i~~---~~~~~~~~-~ 107 (139)
T 1rlj_A 41 DHVDTPFVLVTYTTNFGQVPASTQSFLEKY---------AHLLLGVAASGNKVWGDNFAKSADTISR---QYQVPILH-K 107 (139)
T ss_dssp SCCCSCEEEEECCBGGGBCCHHHHHHHHHH---------GGGEEEEEEEECGGGGGGTTHHHHHHHH---HHTCCEEE-E
T ss_pred cccCCCEEEEEcCcCCCcCcHHHHHHHHhC---------CCCEEEEEecCCCcHHHHHHHHHHHHHH---HcCCCCcc-e
Confidence 55678899999999 799999999999653 34678888876543222 2222233332 33443321 1
Q ss_pred cccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031039 110 YTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 159 (167)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~~ 159 (167)
+ ...+++++.++++++.+++.+.
T Consensus 108 ~---------------------------el~g~~~D~~~~~~~~~~~~~~ 130 (139)
T 1rlj_A 108 F---------------------------ELSGTSKDVELFTQEVERVVTK 130 (139)
T ss_dssp E---------------------------ETTCCHHHHHHHHHHHHHHHHH
T ss_pred E---------------------------EEcCCHHHHHHHHHHHHHHHHH
Confidence 1 1236688999999998888753
No 65
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=97.09 E-value=0.00026 Score=51.63 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=60.6
Q ss_pred HHhhCCEEEEeccccC-----CCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCC-CHHHHHHHHHHHHHHcCcE
Q 031039 31 ELAEADGFVFGFPTRF-----GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG-GQETTALTAITQLVHHGMI 104 (167)
Q Consensus 31 ~l~~aD~iIigsPtY~-----~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~g-g~~~~l~~l~~~l~~~g~~ 104 (167)
.+...+-+|+++|||. +.++.++..|++... ..++..++|+++....+ ....+...+.+.+ +..
T Consensus 55 ~~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~-------n~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~---~vP 124 (153)
T 3n3a_C 55 RIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH-------NRALLRGVIASGNRNFGEAYGRAGDVIARKC---GVP 124 (153)
T ss_dssp CCCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH-------HHHHEEEEEEEECGGGGGGTTHHHHHHHHHH---TCC
T ss_pred ccccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc-------ccCcEEEEEecCCCchhHHHHHHHHHHHHHh---CCC
Confidence 4457789999999997 999999999998651 24567888887643222 2234555565554 221
Q ss_pred EecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031039 105 FVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 158 (167)
Q Consensus 105 vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la~ 158 (167)
+ .+++ +..++++|.+++++..+++.+
T Consensus 125 ~---l~kf-------------------------EL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 125 W---LYRF-------------------------ELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp E---EEEE-------------------------ETTCCHHHHHHHHHHHHHHHH
T ss_pred e---EEEE-------------------------eCCCCHHHHHHHHHHHHHHHh
Confidence 1 1221 245789999999999887754
No 66
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=49.67 E-value=11 Score=27.87 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=29.4
Q ss_pred hhHHh--hCCEEEE-eccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELA--EADGFVF-GFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~--~aD~iIi-gsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
++++. ++|+||+ |.+.+.....+.+..|+.+... .||+++.++++
T Consensus 67 ~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~-------~gk~iaaiC~G 114 (212)
T 3efe_A 67 LDECTLESKDLLILPGGTTWSEEIHQPILERIGQALK-------IGTIVAAICGA 114 (212)
T ss_dssp GGGCCCCTTCEEEECCCSCTTSGGGHHHHHHHHHHHH-------HTCEEEEETHH
T ss_pred HHHCCccCCCEEEECCCCccccccCHHHHHHHHHHHH-------CCCEEEEEcHH
Confidence 45555 8999998 4444444556778888877632 56777777653
No 67
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=46.87 E-value=62 Score=25.69 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=59.4
Q ss_pred CCCCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------Ccc--
Q 031039 5 PETLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF-----KAFLDATG--------GLW-- 64 (167)
Q Consensus 5 ~~~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-----k~flDrl~--------~~~-- 64 (167)
...+++++++++.++ .-..++.++.+.+.+....|.-+|-|+....+++ -.+..++. .-|
T Consensus 51 ~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~ 130 (334)
T 3kb6_A 51 YDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQ 130 (334)
T ss_dssp TSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC
T ss_pred CCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 345778888765554 3456666778888888889999999886544432 22211111 011
Q ss_pred ----cccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 65 ----RTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 65 ----~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
....+.||.++++|.+ ... ..+...+..+||.++.
T Consensus 131 ~~~~~~~~l~g~tvGIiG~G-----~IG---~~va~~~~~fg~~v~~ 169 (334)
T 3kb6_A 131 DSEILARELNRLTLGVIGTG-----RIG---SRVAMYGLAFGMKVLC 169 (334)
T ss_dssp CGGGCBCCGGGSEEEEECCS-----HHH---HHHHHHHHHTTCEEEE
T ss_pred ccccccceecCcEEEEECcc-----hHH---HHHHHhhcccCceeee
Confidence 1246889999999852 222 1455666778998875
No 68
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*
Probab=40.53 E-value=83 Score=25.24 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=55.1
Q ss_pred hhHHhhCCEEEEeccccCCC-chHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcC---cE
Q 031039 29 PNELAEADGFVFGFPTRFGM-MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHG---MI 104 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~-~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g---~~ 104 (167)
.+.++++|.+|+=+|- |. -...+|.|++.+ +..+++++.-.. ... .+...|...+ ..
T Consensus 136 ~EAvk~AEi~IlftPf--G~~t~~Iakkii~~l-----------pEgAII~nTCTi--pp~----~ly~~le~l~R~Dvg 196 (358)
T 2b0j_A 136 REAVEGADIVITWLPK--GNKQPDIIKKFADAI-----------PEGAIVTHACTI--PTT----KFAKIFKDLGREDLN 196 (358)
T ss_dssp HHHHTTCSEEEECCTT--CTTHHHHHHHHGGGS-----------CTTCEEEECSSS--CHH----HHHHHHHHTTCTTSE
T ss_pred HHHhcCCCEEEEecCC--CCCcHHHHHHHHhhC-----------cCCCEEecccCC--CHH----HHHHHHHHhCcccCC
Confidence 6889999999999985 66 567789999988 234566654322 221 2333333232 32
Q ss_pred EecCccccCCCcccccccccCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031039 105 FVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIA 157 (167)
Q Consensus 105 vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~l~~a~~lG~~la 157 (167)
+.+ + +-+...|.....-.+...-++|+.++|.+|++...
T Consensus 197 IsS--~------------HPaaVPgt~Gq~~~g~~yAtEEqIeklveLaksa~ 235 (358)
T 2b0j_A 197 ITS--Y------------HPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIAR 235 (358)
T ss_dssp EEE--C------------BCSSCTTTCCCEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred eec--c------------CCCCCCCCCCccccccccCCHHHHHHHHHHHHHhC
Confidence 221 1 00111121111002345677999999999998765
No 69
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=39.92 E-value=50 Score=26.96 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=49.0
Q ss_pred CCCCCCCChhHHhhCCEEEEeccccCCCchHHHH-----HHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHH
Q 031039 21 KSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK-----AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAI 95 (167)
Q Consensus 21 ~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k-----~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~ 95 (167)
-..++.++.+.+.+....+.-+|-|+....++.- .+..+. ...+.||.++++|.+ ... ..+.
T Consensus 69 ~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~-----g~~l~gktvGIIGlG-----~IG---~~vA 135 (381)
T 3oet_A 69 TAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD-----GFSLRDRTIGIVGVG-----NVG---SRLQ 135 (381)
T ss_dssp SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT-----TCCGGGCEEEEECCS-----HHH---HHHH
T ss_pred cccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc-----CCccCCCEEEEEeEC-----HHH---HHHH
Confidence 3455667778888999999999998765554422 222221 347899999999962 111 1455
Q ss_pred HHHHHcCcEEec
Q 031039 96 TQLVHHGMIFVP 107 (167)
Q Consensus 96 ~~l~~~g~~vv~ 107 (167)
..+..+||.++.
T Consensus 136 ~~l~a~G~~V~~ 147 (381)
T 3oet_A 136 TRLEALGIRTLL 147 (381)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCEEEE
Confidence 666778998875
No 70
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=39.75 E-value=1e+02 Score=23.45 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=38.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCC-CCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l-~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
.+++.++|.||++.|+. ..++..++.+.. .+ +|+.+ +-.+ . .. ..+.+.+.+.+...|..+++
T Consensus 65 ~~~~~~aDvvi~~vp~~-----~~~~~v~~~l~~-----~l~~g~iv-v~~s--t--~~-~~~~~~~~~~~~~~g~~~~~ 128 (296)
T 3qha_A 65 VADVAAADLIHITVLDD-----AQVREVVGELAG-----HAKPGTVI-AIHS--T--IS-DTTAVELARDLKARDIHIVD 128 (296)
T ss_dssp HHHHTTSSEEEECCSSH-----HHHHHHHHHHHT-----TCCTTCEE-EECS--C--CC-HHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHhCCEEEEECCCh-----HHHHHHHHHHHH-----hcCCCCEE-EEeC--C--CC-HHHHHHHHHHHHHcCCEEEe
Confidence 55555599999999963 356666666632 23 34433 2222 1 12 23344666677777888887
Q ss_pred Cccc
Q 031039 108 IGYT 111 (167)
Q Consensus 108 ~~~~ 111 (167)
.++.
T Consensus 129 ~pv~ 132 (296)
T 3qha_A 129 APVS 132 (296)
T ss_dssp CCEE
T ss_pred CCCc
Confidence 6543
No 71
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=37.38 E-value=64 Score=25.72 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=36.5
Q ss_pred CCEEEE---------------eccccCCCc--hHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHH
Q 031039 35 ADGFVF---------------GFPTRFGMM--AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQ 97 (167)
Q Consensus 35 aD~iIi---------------gsPtY~~~~--~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~ 97 (167)
+|+|++ ..|+.|+.- .-+...++|-+.-....+.++|++++++|-. . ....++...
T Consensus 102 ~D~iviR~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~-----~--~va~Sl~~~ 174 (321)
T 1oth_A 102 ADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDG-----N--NILHSIMMS 174 (321)
T ss_dssp CSEEEEECSCHHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCS-----S--HHHHHHHTT
T ss_pred CCEEEEeCCChhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCc-----h--hhHHHHHHH
Confidence 688887 467776431 1233445554421111257899998887741 1 344566555
Q ss_pred HHHcCcEEe
Q 031039 98 LVHHGMIFV 106 (167)
Q Consensus 98 l~~~g~~vv 106 (167)
+..+|+.+.
T Consensus 175 ~~~~G~~v~ 183 (321)
T 1oth_A 175 AAKFGMHLQ 183 (321)
T ss_dssp TGGGTCEEE
T ss_pred HHHcCCeEE
Confidence 566677664
No 72
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=35.36 E-value=73 Score=21.43 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=42.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..-+..+|++|+..-.-...-...++.|+..+.. ....+.++.++++--............+...+...++.++.
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA----QGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFME 153 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH----HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEE
Confidence 5567789999997655443334566777776632 22357788888874321111111123455555566766553
No 73
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=35.34 E-value=83 Score=24.46 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=38.8
Q ss_pred hhHHhh----CCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcE
Q 031039 29 PNELAE----ADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 29 ~~~l~~----aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
++++.+ .|.+|+.+|.- .....++.+.. .|.+..++.+.|-. +.....+.+.....|+.
T Consensus 62 l~el~~~~~~~DvaIi~vp~~------~~~~~v~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 62 VKEALAEHPEINTSIVFVPAP------FAPDAVYEAVD-------AGIRLVVVITEGIP----VHDTMRFVNYARQKGAT 124 (297)
T ss_dssp HHHHHHHCTTCCEEEECCCGG------GHHHHHHHHHH-------TTCSEEEECCCCCC----HHHHHHHHHHHHHHTCE
T ss_pred HHHHhhcCCCCCEEEEecCHH------HHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCE
Confidence 556654 89999999862 22334444411 45665565554432 12245677777888999
Q ss_pred EecCc
Q 031039 105 FVPIG 109 (167)
Q Consensus 105 vv~~~ 109 (167)
++++.
T Consensus 125 viGPN 129 (297)
T 2yv2_A 125 IIGPN 129 (297)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 99764
No 74
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=35.01 E-value=85 Score=24.22 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=38.4
Q ss_pred hhHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEE
Q 031039 29 PNELA---EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIF 105 (167)
Q Consensus 29 ~~~l~---~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~v 105 (167)
++++. +.|.+|+.+|... ....++..++ .|+++.++.+.|- . ......+.+.....|+.+
T Consensus 56 l~el~~~~~~D~viI~tP~~~--~~~~~~ea~~-----------~Gi~~iVi~t~G~---~-~~~~~~l~~~A~~~gv~l 118 (288)
T 2nu8_A 56 VREAVAATGATASVIYVPAPF--CKDSILEAID-----------AGIKLIITITEGI---P-TLDMLTVKVKLDEAGVRM 118 (288)
T ss_dssp HHHHHHHHCCCEEEECCCGGG--HHHHHHHHHH-----------TTCSEEEECCCCC---C-HHHHHHHHHHHHHHTCEE
T ss_pred HHHHhhcCCCCEEEEecCHHH--HHHHHHHHHH-----------CCCCEEEEECCCC---C-HHHHHHHHHHHHHcCCEE
Confidence 55554 5999999999842 2233332222 4566655554332 1 222346777778889999
Q ss_pred ecCc
Q 031039 106 VPIG 109 (167)
Q Consensus 106 v~~~ 109 (167)
+++.
T Consensus 119 iGPN 122 (288)
T 2nu8_A 119 IGPN 122 (288)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9765
No 75
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=34.78 E-value=1.2e+02 Score=22.97 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=37.4
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHH---HhcCcccccCC-CCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcE
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLD---ATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flD---rl~~~~~~~~l-~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
.+.+.++|.||++.|.. ..++..+. .+. ..+ +++.+ +.++ . .. ..+...+...+...|..
T Consensus 54 ~~~~~~aDvvi~~vp~~-----~~~~~v~~~~~~~~-----~~l~~~~~v--i~~s-t--~~-~~~~~~l~~~~~~~g~~ 117 (302)
T 2h78_A 54 RDAVQGADVVISMLPAS-----QHVEGLYLDDDGLL-----AHIAPGTLV--LECS-T--IA-PTSARKIHAAARERGLA 117 (302)
T ss_dssp HHHHTTCSEEEECCSCH-----HHHHHHHHSSSCGG-----GSSCSSCEE--EECS-C--CC-HHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCeEEEECCCH-----HHHHHHHcCchhHH-----hcCCCCcEE--EECC-C--CC-HHHHHHHHHHHHHcCCE
Confidence 34567899999999863 45677776 442 123 34432 2221 1 12 22334566666667877
Q ss_pred EecCcc
Q 031039 105 FVPIGY 110 (167)
Q Consensus 105 vv~~~~ 110 (167)
+++.+.
T Consensus 118 ~~~~pv 123 (302)
T 2h78_A 118 MLDAPV 123 (302)
T ss_dssp EEECCE
T ss_pred EEEEEc
Confidence 776554
No 76
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=34.02 E-value=27 Score=23.25 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.8
Q ss_pred CCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 25 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 25 ~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..++.+++.+||.||+++.+-.- =.+| |.||++.-+.+.
T Consensus 48 n~Lt~~~I~~AD~VIia~d~~v~--------~~~R---------F~gk~v~~~~v~ 86 (106)
T 2m1z_A 48 NELTEKDVNIGEVVIFAVDTKVR--------NKER---------FDGKVVLEVPVS 86 (106)
T ss_dssp SCCCHHHHHHCSEEEEEESSCCS--------THHH---------HTTSEEEEECTT
T ss_pred CCCCHHHHhhCCEEEEecccccc--------chhc---------cCCCcEEEEcHH
Confidence 34568999999999999987431 0223 478998777763
No 77
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=34.01 E-value=35 Score=25.20 Aligned_cols=38 Identities=16% Similarity=-0.029 Sum_probs=25.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEE
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 78 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~ 78 (167)
..++.++|.|||.||. .++.|++.+. ..+.+++++++|
T Consensus 45 ~~~l~~~d~viftS~~-------aV~~~~~~l~-----~~l~~~~~~aVG 82 (240)
T 3mw8_A 45 LDELSRADILIFISTS-------AVSFATPWLK-----DQWPKATYYAVG 82 (240)
T ss_dssp HHHHTTCSEEEECSHH-------HHHHHHHHHT-----TCCCSSEEEESS
T ss_pred HHHhcCCCEEEEECHH-------HHHHHHHHHH-----hhCcCCeEEEEC
Confidence 4567889999999986 5567777663 234555555444
No 78
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=33.90 E-value=1.3e+02 Score=23.85 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=58.5
Q ss_pred CCCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------Cccc--
Q 031039 6 ETLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF-----KAFLDATG--------GLWR-- 65 (167)
Q Consensus 6 ~~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-----k~flDrl~--------~~~~-- 65 (167)
..++++.++.+.++ .-..++.++.+.+.+-...|.-+|-|+....++. -.+..++. ..|.
T Consensus 52 ~~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~ 131 (334)
T 2pi1_A 52 DKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQD 131 (334)
T ss_dssp SCBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCC
T ss_pred CCCCHHHHhhCCCCeEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCccc
Confidence 45677788765554 3355666778888899999999999985443332 22221111 1121
Q ss_pred ----ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 ----TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 ----~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...|.||.++++|.+ ... ..+...+..+||.++.
T Consensus 132 ~~~~~~~l~g~tvgIiG~G-----~IG---~~vA~~l~~~G~~V~~ 169 (334)
T 2pi1_A 132 SEILARELNRLTLGVIGTG-----RIG---SRVAMYGLAFGMKVLC 169 (334)
T ss_dssp GGGCBCCGGGSEEEEECCS-----HHH---HHHHHHHHHTTCEEEE
T ss_pred cCccceeccCceEEEECcC-----HHH---HHHHHHHHHCcCEEEE
Confidence 236889999999852 111 1455566778998875
No 79
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=33.79 E-value=1.3e+02 Score=23.70 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=56.6
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF-----KAFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-----k~flDrl~--------~~~~--- 65 (167)
.++++.++...++ .-..++.++.+...+....|.-+|-|+....+++ -.+..++. ..|.
T Consensus 56 ~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~ 135 (330)
T 4e5n_A 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQ 135 (330)
T ss_dssp CBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCC
T ss_pred CCCHHHHhhCCCCcEEEECCCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccC
Confidence 4567777754443 2346666778888898999999999886554332 22222211 1121
Q ss_pred ----ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 ----TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 ----~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+ ... ..+...+..+||.++.
T Consensus 136 ~~~~~~~l~g~tvGIIG~G-----~IG---~~vA~~l~~~G~~V~~ 173 (330)
T 4e5n_A 136 PRFYGTGLDNATVGFLGMG-----AIG---LAMADRLQGWGATLQY 173 (330)
T ss_dssp SCCCCCCSTTCEEEEECCS-----HHH---HHHHHHTTTSCCEEEE
T ss_pred ccccCCccCCCEEEEEeeC-----HHH---HHHHHHHHHCCCEEEE
Confidence 236899999999952 111 1445556677888764
No 80
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=33.58 E-value=82 Score=24.71 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=53.3
Q ss_pred CCHHHHhcc-CCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc---
Q 031039 8 LPEEVLGKM-SAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR--- 65 (167)
Q Consensus 8 ~~~~~~~~~-~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~--- 65 (167)
++++.++.. .++ .-..++.++.+.+.+....|..+|.++....++ +..+..++. ..|.
T Consensus 65 ~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~ 144 (330)
T 2gcg_A 65 VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 144 (330)
T ss_dssp BCHHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCC
T ss_pred CCHHHHHhcCCCceEEEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccC
Confidence 456666544 333 234556667788888899999999987655443 222222210 1232
Q ss_pred -----ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 66 -----TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 66 -----~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
...+.||.++++|.+. . |. .+...+...|+.++
T Consensus 145 ~~~~~~~~l~g~~vgIIG~G~-i--G~-----~iA~~l~~~G~~V~ 182 (330)
T 2gcg_A 145 PLWLCGYGLTQSTVGIIGLGR-I--GQ-----AIARRLKPFGVQRF 182 (330)
T ss_dssp TTSSCBCCCTTCEEEEECCSH-H--HH-----HHHHHHGGGTCCEE
T ss_pred cccccCcCCCCCEEEEECcCH-H--HH-----HHHHHHHHCCCEEE
Confidence 1468899999998521 1 11 34445566777765
No 81
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=33.39 E-value=33 Score=24.61 Aligned_cols=41 Identities=15% Similarity=-0.151 Sum_probs=24.5
Q ss_pred HhhCCEEEEe--ccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEc
Q 031039 32 LAEADGFVFG--FPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 79 (167)
Q Consensus 32 l~~aD~iIig--sPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s 79 (167)
..++|+||+- .......-.+.+..|+.+.. -.||+++.+++
T Consensus 67 ~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~-------~~~k~iaaIC~ 109 (177)
T 4hcj_A 67 AVEFDAVVFVGGIGCITLWDDWRTQGLAKLFL-------DNQKIVAGIGS 109 (177)
T ss_dssp GGGCSEEEECCSGGGGGGTTCHHHHHHHHHHH-------HTTCEEEEETT
T ss_pred HhHCCEEEECCCccHHHHhhCHHHHHHHHHHH-------HhCCEEEEecc
Confidence 4578999983 11222333567777777763 15666666664
No 82
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=33.24 E-value=1e+02 Score=24.99 Aligned_cols=74 Identities=15% Similarity=0.035 Sum_probs=47.1
Q ss_pred CCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHH
Q 031039 21 KSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAI 95 (167)
Q Consensus 21 ~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~ 95 (167)
...++.++.+.+.+....+..+|-++....++ +..+..+. ...+.||.++++|. | ... ..+.
T Consensus 66 ~~G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~-----~~~l~g~tvGIIGl-G----~IG---~~vA 132 (380)
T 2o4c_A 66 TIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR-----GADLAERTYGVVGA-G----QVG---GRLV 132 (380)
T ss_dssp SSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH-----TCCGGGCEEEEECC-S----HHH---HHHH
T ss_pred CcccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh-----hcccCCCEEEEEeC-C----HHH---HHHH
Confidence 34556667788888888888899887654433 22222222 24789999999985 1 111 1455
Q ss_pred HHHHHcCcEEec
Q 031039 96 TQLVHHGMIFVP 107 (167)
Q Consensus 96 ~~l~~~g~~vv~ 107 (167)
..+..+||.++.
T Consensus 133 ~~l~~~G~~V~~ 144 (380)
T 2o4c_A 133 EVLRGLGWKVLV 144 (380)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCEEEE
Confidence 566678888764
No 83
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=33.04 E-value=60 Score=22.03 Aligned_cols=75 Identities=7% Similarity=0.046 Sum_probs=41.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..-+.++|++|+....-...-...++.|++.+.. ....+.++.++++--..........+.....+...++.++.
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 149 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE----HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFME 149 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHH----HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEE
Confidence 4557789999997766554344566667776632 12356788888874321111111122444455556766553
No 84
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=32.29 E-value=1.2e+02 Score=21.11 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=35.8
Q ss_pred CCCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 23 DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 23 d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
+.......-+..+|++|+....-...-...++.|++.+.. ....+.++.++++-
T Consensus 69 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~nK 122 (206)
T 2bcg_Y 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR----YATSTVLKLLVGNK 122 (206)
T ss_dssp TTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH----HSCTTCEEEEEEEC
T ss_pred HHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEEC
Confidence 3444446678899999998776655555667777777632 12356788888774
No 85
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=31.97 E-value=30 Score=24.44 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=10.1
Q ss_pred ccCCCchHHHHHHHHHhc
Q 031039 44 TRFGMMAAQFKAFLDATG 61 (167)
Q Consensus 44 tY~~~~~~~~k~flDrl~ 61 (167)
.||++|+..+|.||+.+.
T Consensus 15 ~~~~~m~~~Lq~~L~~ll 32 (143)
T 3cpt_A 15 LYFQGSADDLKRFLYKKL 32 (143)
T ss_dssp -------CHHHHHHHHHG
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 489999999999999985
No 86
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=31.55 E-value=1.1e+02 Score=24.08 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=54.2
Q ss_pred CCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc----
Q 031039 8 LPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR---- 65 (167)
Q Consensus 8 ~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~---- 65 (167)
++++.++...++ .-..++.++.+...+....|.-+|.|+...-++ +-.+..++. ..|.
T Consensus 57 ~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~ 136 (334)
T 2dbq_A 57 IDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGV 136 (334)
T ss_dssp BCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTC
T ss_pred CCHHHHhhCCCceEEEECCcccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccc
Confidence 566666654443 234556677788888888999999987654433 222222220 1232
Q ss_pred --------ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 --------TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 --------~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+.. |. .+...+..+|+.++.
T Consensus 137 ~~~~~~~~~~~l~g~~vgIIG~G~i---G~-----~iA~~l~~~G~~V~~ 178 (334)
T 2dbq_A 137 AWHPKWFLGYDVYGKTIGIIGLGRI---GQ-----AIAKRAKGFNMRILY 178 (334)
T ss_dssp CCCTTTTCCCCCTTCEEEEECCSHH---HH-----HHHHHHHHTTCEEEE
T ss_pred ccccccccccCCCCCEEEEEccCHH---HH-----HHHHHHHhCCCEEEE
Confidence 23689999999985211 11 344455667887764
No 87
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=31.13 E-value=87 Score=24.96 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.0
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhc
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 61 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~ 61 (167)
+.+.++|.||++.|.+ .++.+++.+.
T Consensus 95 ea~~~aDvVilaVp~~------~~~~vl~~i~ 120 (356)
T 3k96_A 95 ASLEGVTDILIVVPSF------AFHEVITRMK 120 (356)
T ss_dssp HHHTTCCEEEECCCHH------HHHHHHHHHG
T ss_pred HHHhcCCEEEECCCHH------HHHHHHHHHH
Confidence 5678999999999985 5777777774
No 88
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=31.11 E-value=1.5e+02 Score=22.28 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=37.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHH---HHhcCcccccCC-CCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcE
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFL---DATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~fl---Drl~~~~~~~~l-~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
.+.+.++|.||++.|.. ..++..+ +.+. ..+ +|+.+ +.++ . .. ..+...+.+.+...|..
T Consensus 52 ~~~~~~advvi~~v~~~-----~~~~~v~~~~~~l~-----~~l~~g~~v--v~~s-t--~~-~~~~~~~~~~~~~~g~~ 115 (287)
T 3pdu_A 52 AEVCAACDITIAMLADP-----AAAREVCFGANGVL-----EGIGGGRGY--IDMS-T--VD-DETSTAIGAAVTARGGR 115 (287)
T ss_dssp HHHHHHCSEEEECCSSH-----HHHHHHHHSTTCGG-----GTCCTTCEE--EECS-C--CC-HHHHHHHHHHHHHTTCE
T ss_pred HHHHHcCCEEEEEcCCH-----HHHHHHHcCchhhh-----hcccCCCEE--EECC-C--CC-HHHHHHHHHHHHHcCCE
Confidence 34567899999999963 3566666 4442 123 34433 2221 1 12 23344566666677888
Q ss_pred EecCccc
Q 031039 105 FVPIGYT 111 (167)
Q Consensus 105 vv~~~~~ 111 (167)
+++.++.
T Consensus 116 ~~~~pv~ 122 (287)
T 3pdu_A 116 FLEAPVS 122 (287)
T ss_dssp EEECCEE
T ss_pred EEECCcc
Confidence 8876543
No 89
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=30.35 E-value=2.1e+02 Score=23.68 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 69 LAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 69 l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
|+|+++++++-+.-..|........+...+..+||.+.
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~ 223 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVV 223 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEE
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 78999988874332222212445566666777788764
No 90
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=30.35 E-value=55 Score=21.93 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=42.4
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..-+.++|++|+....-...-...++.|++.+.. ..-.++++.++++--..........+.+...+...++.++.
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN----LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLE 156 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHH----hcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 4567889999997766555445566677766632 12256788888874321100001123455555666766553
No 91
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=30.34 E-value=88 Score=21.66 Aligned_cols=74 Identities=8% Similarity=0.003 Sum_probs=40.6
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
.-+..+|++|+..-.-...-...++.|+..+.. ....++++.++++--....................++.++.
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKT----YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFE 149 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHH----HSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEE
T ss_pred HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEE
Confidence 346789999988766554444556677776622 22457888888874321111111122344444455665553
No 92
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=30.15 E-value=2.2e+02 Score=23.10 Aligned_cols=93 Identities=16% Similarity=0.061 Sum_probs=57.1
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~--- 65 (167)
.+++++++...++ .-..++.++.+...+....|+-+|.++....++ |-.+..++. ..|.
T Consensus 58 ~~~~~~l~~~~~Lk~I~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~ 137 (404)
T 1sc6_A 58 HLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA 137 (404)
T ss_dssp CBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC---
T ss_pred CCCHHHHhhCCCCcEEEECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccC
Confidence 4566666654333 234566677888899999999999987654433 222222221 1232
Q ss_pred --ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 --TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 --~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+ ... ..+...+..+||.++.
T Consensus 138 ~~~~el~gktlGiIGlG-----~IG---~~vA~~l~~~G~~V~~ 173 (404)
T 1sc6_A 138 AGSFEARGKKLGIIGYG-----HIG---TQLGILAESLGMYVYF 173 (404)
T ss_dssp --CCCSTTCEEEEECCS-----HHH---HHHHHHHHHTTCEEEE
T ss_pred CCccccCCCEEEEEeEC-----HHH---HHHHHHHHHCCCEEEE
Confidence 246899999999852 111 1455566778998874
No 93
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=29.70 E-value=33 Score=23.07 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=28.3
Q ss_pred CCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 26 IITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 26 ~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
.++.+++.+||.|||.+-+-- + ...+|.||++.-..+.
T Consensus 52 ~Lt~~~I~~Ad~VIiA~d~~v-----------~------~~~RF~GK~v~~~~v~ 89 (111)
T 2kyr_A 52 RLTAQDIAEATIIIHSVAVTP-----------E------DNERFESRDVYEITLQ 89 (111)
T ss_dssp CCCHHHHHHCSEEEEEESSCC-----------T------TGGGGTTSCEEEEETT
T ss_pred CCCHHHHHhCCEEEEEeCCCc-----------C------chhhcCCCeEEEeCHH
Confidence 467899999999999987641 1 1235689999888763
No 94
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=29.47 E-value=21 Score=29.16 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=11.7
Q ss_pred HhhCCEEEEeccc
Q 031039 32 LAEADGFVFGFPT 44 (167)
Q Consensus 32 l~~aD~iIigsPt 44 (167)
-..|||||++|||
T Consensus 244 ~~~aDGlIVSTPT 256 (365)
T 3pfn_A 244 TVQGDGVIVSTPT 256 (365)
T ss_dssp EECSSEEEEECGG
T ss_pred EEecCeEEEeCCc
Confidence 4589999999999
No 95
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=29.33 E-value=21 Score=26.71 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=24.7
Q ss_pred hhHHhh--CCEEEEeccccCC-CchHHHHHHHHHhcCcc
Q 031039 29 PNELAE--ADGFVFGFPTRFG-MMAAQFKAFLDATGGLW 64 (167)
Q Consensus 29 ~~~l~~--aD~iIigsPtY~~-~~~~~~k~flDrl~~~~ 64 (167)
..++.+ ||.+|+|+|.+.. ++...++.+.+.+...|
T Consensus 182 ~~~~~~aGad~~VvG~~I~~a~dp~~a~~~~~~~~~~~~ 220 (221)
T 3exr_A 182 LKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKRIW 220 (221)
T ss_dssp GGGGTTCCCSEEEECHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECchhhCCCCHHHHHHHHHHHHHHHh
Confidence 445555 7899999999964 46666777776664333
No 96
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=28.70 E-value=31 Score=25.26 Aligned_cols=45 Identities=7% Similarity=-0.028 Sum_probs=27.5
Q ss_pred hhHHhhCCEEEEeccccCC----CchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFG----MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~----~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
++++.++|.||+..-.-.. .-.+.+..|+.+.. -+||+++.++++
T Consensus 69 ~~~~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~-------~~g~~iaaIC~G 117 (209)
T 3er6_A 69 WQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELH-------LKGSKIVAIDTG 117 (209)
T ss_dssp GGGCSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred ccccCCCCEEEECCCCCchhhhccCCHHHHHHHHHHH-------hcCCEEEEEcHH
Confidence 5566789999994422111 22566777777662 256777777654
No 97
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=28.54 E-value=28 Score=26.41 Aligned_cols=41 Identities=7% Similarity=-0.092 Sum_probs=24.6
Q ss_pred HhhCCEEEEec--cc-cCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEc
Q 031039 32 LAEADGFVFGF--PT-RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 79 (167)
Q Consensus 32 l~~aD~iIigs--Pt-Y~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s 79 (167)
..++|+|++-. +. +.......+..|+.+... .||+++.+++
T Consensus 96 ~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~-------~gk~iaaIC~ 139 (244)
T 3kkl_A 96 ASDYKVFFASAGHGALFDYPKAKNLQDIASKIYA-------NGGVIAAICH 139 (244)
T ss_dssp GGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred HhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHH-------cCCEEEEECH
Confidence 35799999833 22 334456777788877632 4555555544
No 98
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=27.85 E-value=1.7e+02 Score=22.32 Aligned_cols=68 Identities=12% Similarity=0.019 Sum_probs=37.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHH---HHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEE
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFL---DATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIF 105 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~fl---Drl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~v 105 (167)
.+.+.++|.||++.|+. ..++..+ +.+.. ...+|+.+ +-++ . .. ..+...+...+...|..+
T Consensus 72 ~~~~~~aDvvi~~vp~~-----~~~~~v~~~~~~l~~----~l~~g~~v--v~~s-t--~~-~~~~~~~~~~~~~~g~~~ 136 (310)
T 3doj_A 72 AEVIKKCKYTIAMLSDP-----CAALSVVFDKGGVLE----QICEGKGY--IDMS-T--VD-AETSLKINEAITGKGGRF 136 (310)
T ss_dssp HHHHHHCSEEEECCSSH-----HHHHHHHHSTTCGGG----GCCTTCEE--EECS-C--CC-HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhCCEEEEEcCCH-----HHHHHHHhCchhhhh----ccCCCCEE--EECC-C--CC-HHHHHHHHHHHHHcCCEE
Confidence 45577899999999863 3455555 43321 11244433 2221 1 12 233445666667778888
Q ss_pred ecCccc
Q 031039 106 VPIGYT 111 (167)
Q Consensus 106 v~~~~~ 111 (167)
++.++.
T Consensus 137 v~~pv~ 142 (310)
T 3doj_A 137 VEGPVS 142 (310)
T ss_dssp EECCEE
T ss_pred EeCCCC
Confidence 876543
No 99
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=27.59 E-value=38 Score=22.54 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=27.6
Q ss_pred CCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 26 IITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 26 ~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
.++.+++.+||.|||.+-+-- | ..+|.||++.-..+.
T Consensus 49 ~Lt~~~I~~Ad~VIiA~d~~v-----------~-------~~RF~GK~v~~~~v~ 85 (106)
T 2r48_A 49 KLTEEEIREADAIIIAADRSV-----------N-------KDRFIGKKLLSVGVQ 85 (106)
T ss_dssp CCCHHHHHHCSEEEEEESSCC-----------C-------CGGGTTSBEEEECHH
T ss_pred CCCHHHHHhCCEEEEEeCCcc-----------C-------HhHcCCCeEEEeCHH
Confidence 456889999999999987631 1 235689998877763
No 100
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=27.51 E-value=98 Score=23.98 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=39.6
Q ss_pred hhHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEE
Q 031039 29 PNELA---EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIF 105 (167)
Q Consensus 29 ~~~l~---~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~v 105 (167)
++++. ..|.+|+.+|. ......++.+.. .|.+..++.+.|-. +.....+.+.....|+.+
T Consensus 62 l~el~~~~~~Dv~ii~vp~------~~~~~~v~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~A~~~gi~v 124 (294)
T 2yv1_A 62 VKEAVKETDANASVIFVPA------PFAKDAVFEAID-------AGIELIVVITEHIP----VHDTMEFVNYAEDVGVKI 124 (294)
T ss_dssp HHHHHHHHCCCEEEECCCH------HHHHHHHHHHHH-------TTCSEEEECCSCCC----HHHHHHHHHHHHHHTCEE
T ss_pred HHHHhhcCCCCEEEEccCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEE
Confidence 45554 59999999886 333444455421 46675565554432 222456777778889999
Q ss_pred ecCc
Q 031039 106 VPIG 109 (167)
Q Consensus 106 v~~~ 109 (167)
+++.
T Consensus 125 iGPN 128 (294)
T 2yv1_A 125 IGPN 128 (294)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9764
No 101
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=27.46 E-value=1.9e+02 Score=22.85 Aligned_cols=92 Identities=16% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc----
Q 031039 8 LPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR---- 65 (167)
Q Consensus 8 ~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~---- 65 (167)
++++.++...++ .-..++.++.+...+....|.-+|.|+....++ +-.+..++. ..|.
T Consensus 79 ~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~ 158 (335)
T 2g76_A 79 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF 158 (335)
T ss_dssp BCHHHHHHCSSCCEEEESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGG
T ss_pred CCHHHHhhCCCCcEEEECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCC
Confidence 566666654443 234556666788888888899999887554333 222322221 1242
Q ss_pred -ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 -TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 -~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+ .... .+...+..+||.++.
T Consensus 159 ~~~~l~g~tvgIIGlG-----~IG~---~vA~~l~~~G~~V~~ 193 (335)
T 2g76_A 159 MGTELNGKTLGILGLG-----RIGR---EVATRMQSFGMKTIG 193 (335)
T ss_dssp CBCCCTTCEEEEECCS-----HHHH---HHHHHHHTTTCEEEE
T ss_pred CCcCCCcCEEEEEeEC-----HHHH---HHHHHHHHCCCEEEE
Confidence 246899999999852 1111 344556677888764
No 102
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=27.44 E-value=2.3e+02 Score=22.43 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=55.7
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~--- 65 (167)
.++++.++...++ .-..++.++.+...+....|..+|.|+....++ +..+..++. ..|.
T Consensus 74 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~ 153 (347)
T 1mx3_A 74 TLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSV 153 (347)
T ss_dssp CBCHHHHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSH
T ss_pred CCCHHHHhhCCCCCEEEEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccccc
Confidence 3566666654333 234566677888899999999999997554332 233322221 1121
Q ss_pred ---------ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 ---------TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 ---------~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+ .... .+...+..+||.++.
T Consensus 154 ~~~~~~~~~~~~l~g~tvGIIG~G-----~IG~---~vA~~l~~~G~~V~~ 196 (347)
T 1mx3_A 154 EQIREVASGAARIRGETLGIIGLG-----RVGQ---AVALRAKAFGFNVLF 196 (347)
T ss_dssp HHHHHHTTTCCCCTTCEEEEECCS-----HHHH---HHHHHHHTTTCEEEE
T ss_pred ccccccccCccCCCCCEEEEEeEC-----HHHH---HHHHHHHHCCCEEEE
Confidence 136899999999852 1111 445566677888764
No 103
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=27.29 E-value=56 Score=23.60 Aligned_cols=33 Identities=24% Similarity=0.100 Sum_probs=21.8
Q ss_pred ChhHHhh--CCEEEEeccccCC-CchHHHHHHHHHh
Q 031039 28 TPNELAE--ADGFVFGFPTRFG-MMAAQFKAFLDAT 60 (167)
Q Consensus 28 ~~~~l~~--aD~iIigsPtY~~-~~~~~~k~flDrl 60 (167)
+..++.+ +|++++||+.|.. ++...++.|.+.+
T Consensus 183 ~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~~~~ 218 (220)
T 2fli_A 183 TIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218 (220)
T ss_dssp THHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHh
Confidence 3444544 8999999999876 5555566665443
No 104
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=27.10 E-value=2.2e+02 Score=22.06 Aligned_cols=93 Identities=18% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~--- 65 (167)
.++++.+....++ .-..++.++.+...+-...|.-+|-|+....++ +-.+..++. ..|.
T Consensus 57 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~ 136 (313)
T 2ekl_A 57 KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIE 136 (313)
T ss_dssp CBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCC
T ss_pred CCCHHHHhhCCCCeEEEEcCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC
Confidence 3566666654443 234556677788888899999999987654433 222222221 1231
Q ss_pred ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 ~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+ .... .+...+..+|+.++.
T Consensus 137 ~~~l~g~~vgIIG~G-----~IG~---~~A~~l~~~G~~V~~ 170 (313)
T 2ekl_A 137 GLELAGKTIGIVGFG-----RIGT---KVGIIANAMGMKVLA 170 (313)
T ss_dssp CCCCTTCEEEEESCS-----HHHH---HHHHHHHHTTCEEEE
T ss_pred CCCCCCCEEEEEeeC-----HHHH---HHHHHHHHCCCEEEE
Confidence 247899999999852 2111 445556677888764
No 105
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=26.97 E-value=81 Score=21.59 Aligned_cols=74 Identities=11% Similarity=-0.003 Sum_probs=41.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
..-+..+|++|+..-.-...-...++.|++.+.. ....++++.++++--....................++.++
T Consensus 83 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
T 3tkl_A 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR----YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFL 156 (196)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEE
T ss_pred HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEE
Confidence 5567889999997665554444556677776632 1235778888887432111111111234444455666554
No 106
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=26.84 E-value=59 Score=22.49 Aligned_cols=75 Identities=7% Similarity=-0.029 Sum_probs=41.5
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..-+..+|++|+..-.-...-...++.|++.+.. ....+.++.++++-.....................++.++.
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKT----YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFE 164 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEE
Confidence 3457789999997665444444556677777632 23467888888874321110011122344444556776653
No 107
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=26.21 E-value=2.7e+02 Score=22.83 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=57.4
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHHH-----HHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK-----AFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k-----~flDrl~--------~~~~--- 65 (167)
.+++++++...++ .-..++.++.+...+....|+-+|-|+....+++- .+..++. ..|.
T Consensus 69 ~i~~~~l~~~p~Lk~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~ 148 (416)
T 3k5p_A 69 QLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA 148 (416)
T ss_dssp CBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC
T ss_pred CCCHHHHHhCCCcEEEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC
Confidence 4667777654443 23456667788999999999999988765443322 2221111 1232
Q ss_pred --ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 --TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 --~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+ .... .+...+..+||.++.
T Consensus 149 ~~~~el~gktvGIIGlG-----~IG~---~vA~~l~~~G~~V~~ 184 (416)
T 3k5p_A 149 IGSREVRGKTLGIVGYG-----NIGS---QVGNLAESLGMTVRY 184 (416)
T ss_dssp TTCCCSTTCEEEEECCS-----HHHH---HHHHHHHHTTCEEEE
T ss_pred CCCccCCCCEEEEEeeC-----HHHH---HHHHHHHHCCCEEEE
Confidence 246899999999952 1111 445566778999875
No 108
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=26.09 E-value=36 Score=24.73 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=24.5
Q ss_pred HhhCCEEEE-eccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 32 LAEADGFVF-GFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 32 l~~aD~iIi-gsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..++|.||+ |.+...... +.+..|+.+... +||+++.++++
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~-------~g~~iaaIC~G 110 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAA-------HGMALGGLWNG 110 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHH-------HTCEEEEETTH
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHh-------hCCEEEEECHH
Confidence 568999998 333222223 667777776521 46666666653
No 109
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=25.58 E-value=97 Score=21.35 Aligned_cols=77 Identities=10% Similarity=-0.020 Sum_probs=44.8
Q ss_pred CChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 27 ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 27 ~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
....-+..+|++|+....-...-...++.|++.+.. ....++++.++++--..........+.+...+...++.++
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~----~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE----HGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHH----HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH----hCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 335667889999998776665555667777777632 2235778888887322110000112345555556676655
Q ss_pred c
Q 031039 107 P 107 (167)
Q Consensus 107 ~ 107 (167)
.
T Consensus 164 ~ 164 (192)
T 2fg5_A 164 E 164 (192)
T ss_dssp E
T ss_pred E
Confidence 3
No 110
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=25.48 E-value=82 Score=21.05 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=34.5
Q ss_pred CCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 25 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 25 ~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
......-+..+|++|+....-...-...++.|+..+. ....+++..++++-
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-----~~~~~~p~ilv~nK 122 (181)
T 3tw8_B 72 RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-----QNCDDVCRILVGNK 122 (181)
T ss_dssp SSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHH-----HHCTTSEEEEEEEC
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH-----HhCCCCCEEEEEEC
Confidence 3344566888999999876655555566677777763 23457788888874
No 111
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=25.45 E-value=1.5e+02 Score=23.58 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=57.6
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF-----KAFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-----k~flDrl~--------~~~~--- 65 (167)
.++++.++...++ .-..++.++.+...+....|.-+|-++....+++ -.+..++. ..|.
T Consensus 82 ~i~~~~l~~~p~Lk~I~~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~ 161 (340)
T 4dgs_A 82 GLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGE 161 (340)
T ss_dssp CBCHHHHHHCSSCCEEEEESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC----
T ss_pred CCCHHHHhhCCCCEEEEECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCccccc
Confidence 4677777764443 2345666778888999999999999876554432 22222211 1232
Q ss_pred ----ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 ----TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 ----~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+. .. ..+...+..+||.++.
T Consensus 162 ~~~~~~~l~gktiGIIGlG~-----IG---~~vA~~l~~~G~~V~~ 199 (340)
T 4dgs_A 162 QLPLGHSPKGKRIGVLGLGQ-----IG---RALASRAEAFGMSVRY 199 (340)
T ss_dssp --CCCCCCTTCEEEEECCSH-----HH---HHHHHHHHTTTCEEEE
T ss_pred CcCccccccCCEEEEECCCH-----HH---HHHHHHHHHCCCEEEE
Confidence 1468899999999621 11 1455566778998874
No 112
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=25.37 E-value=2.3e+02 Score=21.82 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=54.9
Q ss_pred CCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc----
Q 031039 8 LPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR---- 65 (167)
Q Consensus 8 ~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~---- 65 (167)
++++.+....++ .-..++.++.+.+.+....|..+|-|+....++ +-.+..++. ..|.
T Consensus 56 ~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~ 135 (307)
T 1wwk_A 56 VTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEA 135 (307)
T ss_dssp BCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTC
T ss_pred CCHHHHhhCCCCeEEEECCccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCc
Confidence 566666654333 234555566788888899999999987654433 222222211 1242
Q ss_pred -ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 -TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 -~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+ .... .+...+..+||.++.
T Consensus 136 ~~~~l~g~~vgIiG~G-----~IG~---~~A~~l~~~G~~V~~ 170 (307)
T 1wwk_A 136 MGIELEGKTIGIIGFG-----RIGY---QVAKIANALGMNILL 170 (307)
T ss_dssp CBCCCTTCEEEEECCS-----HHHH---HHHHHHHHTTCEEEE
T ss_pred CCcccCCceEEEEccC-----HHHH---HHHHHHHHCCCEEEE
Confidence 247899999999852 2111 445556677888764
No 113
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=25.34 E-value=89 Score=21.22 Aligned_cols=74 Identities=9% Similarity=0.029 Sum_probs=43.5
Q ss_pred CChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 27 ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 27 ~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
....-+..+|++|+..-.-.......++.|+..+.. ..++++.++++--.. .........+...+...++.++
T Consensus 109 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~------~~~~piilv~NK~D~-~~~~~~~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 109 IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI------SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFI 181 (208)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH------HSCCEEEEEEECTTC-C-CCSCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh------hCCCcEEEEEECCCc-ccccCCHHHHHHHHHHcCCcEE
Confidence 335567899999997665554445566777776621 123788888874321 1111223456666666777665
Q ss_pred c
Q 031039 107 P 107 (167)
Q Consensus 107 ~ 107 (167)
.
T Consensus 182 ~ 182 (208)
T 3clv_A 182 Q 182 (208)
T ss_dssp E
T ss_pred E
Confidence 3
No 114
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=25.29 E-value=48 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031039 146 LEQAFHQGKHIAGIAKK 162 (167)
Q Consensus 146 l~~a~~lG~~la~~~~~ 162 (167)
-..|.++|+||+++++.
T Consensus 118 EADaqEFGERiaeLAki 134 (162)
T 1f35_A 118 EADALEFGERLSDLAKI 134 (162)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 35688999999999874
No 115
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=25.19 E-value=1.2e+02 Score=23.84 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=55.7
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~--- 65 (167)
.++++.++...++ .-..++.++.+...+-...|..+|-|+....++ +-.+..++. ..|.
T Consensus 53 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~ 132 (333)
T 2d0i_A 53 KITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHA 132 (333)
T ss_dssp CBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHH
T ss_pred CCCHHHHhhCCCceEEEECCcccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCc
Confidence 3566777654443 235566677788888888899999886554332 222222221 1242
Q ss_pred ----c----cCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 ----T----QQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 ----~----~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
. ..|.||.++++|.+. ... .+...+..+|+.++.
T Consensus 133 ~~~~~~~~~~~l~g~~vgIIG~G~-----iG~---~vA~~l~~~G~~V~~ 174 (333)
T 2d0i_A 133 KIWTGFKRIESLYGKKVGILGMGA-----IGK---AIARRLIPFGVKLYY 174 (333)
T ss_dssp HHHTTSCCCCCSTTCEEEEECCSH-----HHH---HHHHHHGGGTCEEEE
T ss_pred ccccCCcccCCCCcCEEEEEccCH-----HHH---HHHHHHHHCCCEEEE
Confidence 1 478999999998521 111 444556677887764
No 116
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=25.13 E-value=87 Score=24.75 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=34.6
Q ss_pred eccccCCC---chHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 41 GFPTRFGM---MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 41 gsPtY~~~---~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
..|+.|+. -.-+...+.|-+.-....+.++|++++++|-. .+ + ++..++...+..+|+.+.
T Consensus 122 ~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~--~~-~--rva~Sl~~~~~~~G~~v~ 185 (308)
T 1ml4_A 122 EVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDL--KY-G--RTVHSLAEALTFYDVELY 185 (308)
T ss_dssp SSCEEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCT--TT-C--HHHHHHHHHGGGSCEEEE
T ss_pred CCCEEeCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCC--Cc-C--chHHHHHHHHHHCCCEEE
Confidence 46777632 23344555665431112357889998887742 11 1 345566666667787764
No 117
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=25.01 E-value=2.2e+02 Score=21.94 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=41.5
Q ss_pred CEEEEeccccCCCchHHHHHH-----------------------HHHhcCcccccCCCCCeEEEEEccCCCCCC----HH
Q 031039 36 DGFVFGFPTRFGMMAAQFKAF-----------------------LDATGGLWRTQQLAGKPAGMFYSTGSQGGG----QE 88 (167)
Q Consensus 36 D~iIigsPtY~~~~~~~~k~f-----------------------lDrl~~~~~~~~l~gK~~~~f~s~g~~~gg----~~ 88 (167)
|.||+-+|+|.+.....+..- +|.+ ...+..++.+++.+...+.|+ ..
T Consensus 129 ~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l-----~~~l~~~~~~v~~~p~np~g~~~~~~~ 203 (406)
T 4adb_A 129 SGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSA-----SALIDDSTCAVIVEPIQGEGGVVPASN 203 (406)
T ss_dssp CEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHH-----HTTCSTTEEEEEECSEETTTTSEECCH
T ss_pred cEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHH-----HHHhcCCeEEEEEeCCcCCCCCccCCH
Confidence 899999999988765443211 1111 123456777777663333333 44
Q ss_pred HHHHHHHHHHHHcCcEEecC
Q 031039 89 TTALTAITQLVHHGMIFVPI 108 (167)
Q Consensus 89 ~~l~~l~~~l~~~g~~vv~~ 108 (167)
..++.+.+.+..+|..++..
T Consensus 204 ~~l~~l~~l~~~~~~~li~D 223 (406)
T 4adb_A 204 AFLQGLRELCNRHNALLIFD 223 (406)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 55778888888888766654
No 118
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=24.82 E-value=38 Score=22.56 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=27.5
Q ss_pred CCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 26 IITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 26 ~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
.++.+++.+||.|||.+-+-- | ..+|.||++.-.++.
T Consensus 49 ~Lt~~~I~~Ad~VIiA~d~~v-----------~-------~~RF~GK~v~~~~v~ 85 (106)
T 2r4q_A 49 KLTAQEIEDAPAIIVAADKQV-----------E-------MERFKGKRVLQVPVT 85 (106)
T ss_dssp CCCHHHHHHCSCEEEEESSCC-----------C-------CGGGTTSBEEEECHH
T ss_pred CCCHHHHHhCCEEEEEeCCcc-----------C-------HhHcCCCeEEEeCHH
Confidence 466889999999999987631 1 235689998877763
No 119
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=24.57 E-value=1e+02 Score=21.37 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=31.3
Q ss_pred CCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 25 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 25 ~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
......-+..+|++|+..-.-...-...++.|++.+.. ....++++.++++-
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~p~ilv~nK 147 (199)
T 3l0i_B 96 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR----YASENVNKLLVGNK 147 (199)
T ss_dssp CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS----CC-CCSEEEEC-CC
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH----hccCCCCEEEEEEC
Confidence 33335567889999997776665555677778877732 22346777777763
No 120
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=24.52 E-value=1.3e+02 Score=23.17 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=39.4
Q ss_pred hhHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEE
Q 031039 29 PNELA---EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIF 105 (167)
Q Consensus 29 ~~~l~---~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~v 105 (167)
++++. ..|.+|+.+|. ......++.+.. .|.+..++.+.|-. ......+.+.....|+.+
T Consensus 56 l~el~~~~~~Dv~Ii~vp~------~~~~~~~~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~a~~~gi~v 118 (288)
T 1oi7_A 56 VKEAVAHHEVDASIIFVPA------PAAADAALEAAH-------AGIPLIVLITEGIP----TLDMVRAVEEIKALGSRL 118 (288)
T ss_dssp HHHHHHHSCCSEEEECCCH------HHHHHHHHHHHH-------TTCSEEEECCSCCC----HHHHHHHHHHHHHHTCEE
T ss_pred HHHHhhcCCCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEE
Confidence 55555 59999999885 344555555521 45565555554432 122446777777889999
Q ss_pred ecCc
Q 031039 106 VPIG 109 (167)
Q Consensus 106 v~~~ 109 (167)
+++.
T Consensus 119 igPN 122 (288)
T 1oi7_A 119 IGGN 122 (288)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8764
No 121
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=24.34 E-value=37 Score=25.82 Aligned_cols=29 Identities=3% Similarity=-0.275 Sum_probs=18.6
Q ss_pred HhhCCEEEEecc---ccCCCchHHHHHHHHHh
Q 031039 32 LAEADGFVFGFP---TRFGMMAAQFKAFLDAT 60 (167)
Q Consensus 32 l~~aD~iIigsP---tY~~~~~~~~k~flDrl 60 (167)
..++|+|++-.- .+.......+..|+.+.
T Consensus 103 ~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~ 134 (247)
T 3n7t_A 103 PHDYGLMFVCGGHGALYDFPHAKHLQNIAQDI 134 (247)
T ss_dssp GGGCSEEEECCSTTHHHHGGGCHHHHHHHHHH
T ss_pred hhhCCEEEEeCCCchhhhcccCHHHHHHHHHH
Confidence 457999999332 13344557777777776
No 122
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=24.01 E-value=60 Score=23.70 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=26.7
Q ss_pred hhCCEEEE-eccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 33 AEADGFVF-GFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 33 ~~aD~iIi-gsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
.++|+||+ |.+.... ..+.+..|+.+.. -.||+++.++++
T Consensus 62 ~~~D~livpGG~~~~~-~~~~l~~~l~~~~-------~~gk~iaaiC~G 102 (206)
T 3f5d_A 62 ANFNLLVMIGGDSWSN-DNKKLLHFVKTAF-------QKNIPIAAICGA 102 (206)
T ss_dssp SCCSEEEECCBSCCCC-CCHHHHHHHHHHH-------HTTCCEEEETHH
T ss_pred cCCCEEEEcCCCChhh-cCHHHHHHHHHHH-------HcCCEEEEECHH
Confidence 36899998 3333233 6678888888763 267888887763
No 123
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=23.87 E-value=97 Score=21.20 Aligned_cols=80 Identities=11% Similarity=0.000 Sum_probs=43.8
Q ss_pred CCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCc
Q 031039 24 VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGM 103 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~ 103 (167)
.......-+..+|++|+....-...-...++.|++.+.. ....++++.++++--..........+.........++
T Consensus 84 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (189)
T 2gf9_A 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT----YSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF 159 (189)
T ss_dssp SCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred HhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC
Confidence 334445677899999998766544444556667766621 2245788888887432111000012234444455676
Q ss_pred EEec
Q 031039 104 IFVP 107 (167)
Q Consensus 104 ~vv~ 107 (167)
.++.
T Consensus 160 ~~~~ 163 (189)
T 2gf9_A 160 EFFE 163 (189)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5553
No 124
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=23.86 E-value=24 Score=27.59 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.5
Q ss_pred HhhCCEEEEeccc
Q 031039 32 LAEADGFVFGFPT 44 (167)
Q Consensus 32 l~~aD~iIigsPt 44 (167)
-..+||||++|||
T Consensus 170 ~~~~DGlIVsTPT 182 (278)
T 1z0s_A 170 RIRCDGFIVATQI 182 (278)
T ss_dssp EEEESEEEEEESG
T ss_pred EEecCeEEEecCC
Confidence 3589999999998
No 125
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=23.25 E-value=51 Score=24.58 Aligned_cols=41 Identities=12% Similarity=-0.033 Sum_probs=25.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEE
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 78 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~ 78 (167)
..++.++|.|||.||. .++.|++.+...| ..+.+.+++++|
T Consensus 53 l~~l~~~d~vifTS~~-------aV~~~~~~l~~~~--~~~~~~~i~aVG 93 (254)
T 4es6_A 53 MLDLDRYCAVVVVSKP-------AARLGLERLDRYW--PQPPQQTWCSVG 93 (254)
T ss_dssp HHTGGGCSEEEECSHH-------HHHHHHHHHHHHC--SSCCSCEEEESS
T ss_pred HHhccCCCEEEEECHH-------HHHHHHHHHHHhC--CCcccCEEEEEC
Confidence 3567889999999986 4566666553222 123445555554
No 126
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=22.39 E-value=51 Score=24.97 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=23.8
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEE
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 78 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~ 78 (167)
.++.++|.|||.||. .++.|++.+...| ..+.+++++++|
T Consensus 62 ~~l~~~d~vifTS~n-------aV~~~~~~l~~~~--~~~~~~~i~aVG 101 (269)
T 3re1_A 62 FELLNYSAVIVVSKP-------AARLAIELIDEVW--PQPPMQPWFSVG 101 (269)
T ss_dssp HTGGGSSEEEECSHH-------HHHHHHHHHHHHC--SSCCCSCEEESS
T ss_pred HhccCCCEEEEECHH-------HHHHHHHHHHHhC--CCcccCEEEEEC
Confidence 457889999999987 4455665553222 123334544444
No 127
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=22.24 E-value=1.7e+02 Score=20.19 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=34.9
Q ss_pred CCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 26 IITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 26 ~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
.....-+.++|++|+....-...-...++.+++++.. .....++++.++++=
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK 139 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ---EDELRDAVLLVFANK 139 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc---ccccCCCeEEEEEEC
Confidence 3334567899999998776555445666777777632 123467889888874
No 128
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=21.77 E-value=66 Score=21.59 Aligned_cols=52 Identities=12% Similarity=-0.060 Sum_probs=30.8
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-+..+|++|+..-.-...-...++.|++.+..........++++.++++-
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 3456789999997655444444556666666532111122367788888874
No 129
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=21.66 E-value=1.1e+02 Score=20.14 Aligned_cols=47 Identities=6% Similarity=-0.017 Sum_probs=30.0
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 79 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s 79 (167)
..-+.++|++|+....-...-...++.|+..+.. ....+.++.++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~piilv~n 116 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE----QASKDIIIALVGN 116 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH----HSCTTCEEEEEEE
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHH----hcCCCCcEEEEEE
Confidence 4457789999987765554444566667766632 1235677777776
No 130
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=21.65 E-value=1.3e+02 Score=23.75 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=52.4
Q ss_pred CCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---c--ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHH
Q 031039 24 VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---R--TQQLAGKPAGMFYSTGSQGGGQETTALTAITQL 98 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~---~--~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l 98 (167)
.++...+...+.+.-|+.|+.-.......+..|++.-...+ + .....|+-+.+.|.+| .|.. ++...|
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG---~GKS----t~a~~l 164 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSG---IGKS----ETALEL 164 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTT---SSHH----HHHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCC---CCHH----HHHHHH
Confidence 34434788888999999999988999999999998853322 1 1245677666666644 3544 333344
Q ss_pred HHcCcEEecCc
Q 031039 99 VHHGMIFVPIG 109 (167)
Q Consensus 99 ~~~g~~vv~~~ 109 (167)
...|..++...
T Consensus 165 ~~~g~~lv~dD 175 (314)
T 1ko7_A 165 IKRGHRLVADD 175 (314)
T ss_dssp HHTTCEEEESS
T ss_pred HhcCCceecCC
Confidence 55677777643
No 131
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=21.60 E-value=1.2e+02 Score=21.27 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=40.7
Q ss_pred hHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEe
Q 031039 30 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 106 (167)
Q Consensus 30 ~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv 106 (167)
.-+..+|++|+....-...-...++.|++.+.. .....++++.++++--....................++.++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~---~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA---NAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCC---CCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH---hcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 456789999997766554444556677776632 12236788888887432111000112244445555665544
No 132
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=21.39 E-value=1.1e+02 Score=20.21 Aligned_cols=48 Identities=4% Similarity=-0.025 Sum_probs=31.4
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-+..+|++|+....-.......++.|++.+.. ....+.++.++++-
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~----~~~~~~~iilv~nK 120 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ----HGPPSIVVAIAGNK 120 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH----HSCTTSEEEEEEEC
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH----hCCCCCcEEEEEEC
Confidence 4567889999987766554445566777777632 22456777777764
No 133
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=21.26 E-value=1.1e+02 Score=21.01 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=44.1
Q ss_pred CCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCc
Q 031039 24 VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGM 103 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~ 103 (167)
.......-+..+|++|+....-...-...++.|+..+.. ....++++.++++--..........+.........++
T Consensus 83 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ----HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL 158 (191)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC
Confidence 334446778899999998766554444556667776621 1235778888887432111000112234444455676
Q ss_pred EEe
Q 031039 104 IFV 106 (167)
Q Consensus 104 ~vv 106 (167)
.++
T Consensus 159 ~~~ 161 (191)
T 2a5j_A 159 IFM 161 (191)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 134
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=21.20 E-value=1.1e+02 Score=20.06 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=39.9
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
..-+..+|++|+....-...-...++.|+..+.. ....+.++.++++--..........+.........++.++.
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFME 147 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH----HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEE
Confidence 4456789999987766544444566667766622 22356777777763211000001122444455556765553
No 135
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=21.02 E-value=86 Score=21.68 Aligned_cols=48 Identities=4% Similarity=-0.002 Sum_probs=30.6
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-+..+|++|+..-.-...-...++.|++.+.. ....++++.++++-
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~----~~~~~~piilV~NK 140 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK----YASEDAELLLVGNK 140 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEEC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCcEEEEEEC
Confidence 3456789999997766554444555666666521 22357788888873
No 136
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=20.72 E-value=3e+02 Score=21.34 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=55.4
Q ss_pred CCCHHHHhccCC-C-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------Cccc--
Q 031039 7 TLPEEVLGKMSA-P-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF-----KAFLDATG--------GLWR-- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~-~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~~-----k~flDrl~--------~~~~-- 65 (167)
.++++.+.+..+ + .-..++.++.+...+-...|.-+|.|+...-+++ -.+..++. ..|.
T Consensus 55 ~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~ 134 (320)
T 1gdh_A 55 KCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGW 134 (320)
T ss_dssp CBCHHHHHHSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC
T ss_pred CCCHHHHHhCCccceEEEECCcccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCcc
Confidence 356666665444 3 2345566677888888899999999876554443 22222210 1232
Q ss_pred ------ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 ------TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 ------~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+ .... .+...+..+||.++.
T Consensus 135 ~~~~~~~~~l~g~~vgIIG~G-----~IG~---~~A~~l~~~G~~V~~ 174 (320)
T 1gdh_A 135 EPLELVGEKLDNKTLGIYGFG-----SIGQ---ALAKRAQGFDMDIDY 174 (320)
T ss_dssp CTTTTCBCCCTTCEEEEECCS-----HHHH---HHHHHHHTTTCEEEE
T ss_pred ccccccCcCCCCCEEEEECcC-----HHHH---HHHHHHHHCCCEEEE
Confidence 136899999999852 1111 444556667887764
No 137
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=20.70 E-value=1.5e+02 Score=21.04 Aligned_cols=80 Identities=10% Similarity=0.038 Sum_probs=41.1
Q ss_pred CCCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCc
Q 031039 24 VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGM 103 (167)
Q Consensus 24 ~~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~ 103 (167)
+..+...-+..+|++|+..-.-...-...++.|++.+.. ....++++.++++--...............+....++
T Consensus 75 ~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 150 (223)
T 3cpj_B 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE----NADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL 150 (223)
T ss_dssp TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHH----HCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH----hCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 344446678899999987665544444566677776632 1235677877776321100000011234444455666
Q ss_pred EEec
Q 031039 104 IFVP 107 (167)
Q Consensus 104 ~vv~ 107 (167)
.++.
T Consensus 151 ~~~~ 154 (223)
T 3cpj_B 151 LFTE 154 (223)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 138
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.70 E-value=71 Score=23.44 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=33.0
Q ss_pred cCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 45 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 45 Y~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
|+.+..+.++.|+. .+.|+.++++.+++... .....+..+.+.+...|+.+..
T Consensus 10 ~~~~~~~~~~~f~~---------~~~~~~i~~Ip~As~~~-~~~~~~~s~~~a~~~lG~~v~~ 62 (206)
T 3l4e_A 10 SFKDVVPLFTEFES---------NLQGKTVTFIPTASTVE-EVTFYVEAGKKALESLGLLVEE 62 (206)
T ss_dssp CGGGCHHHHHHHSC---------CCTTCEEEEECGGGGGC-SCCHHHHHHHHHHHHTTCEEEE
T ss_pred cccchHHHHHHHHH---------HcCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHcCCeEEE
Confidence 45566666676653 34678888887764321 2223455677778888987654
No 139
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=20.65 E-value=79 Score=22.96 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=19.3
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHh
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 60 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl 60 (167)
.+.+.++|.||+++|. ..+...+..+
T Consensus 76 ~~~~~~aDvVilavp~------~~~~~v~~~l 101 (220)
T 4huj_A 76 LKDALQADVVILAVPY------DSIADIVTQV 101 (220)
T ss_dssp HHHHTTSSEEEEESCG------GGHHHHHTTC
T ss_pred HHHHhcCCEEEEeCCh------HHHHHHHHHh
Confidence 5678899999999994 3455566655
No 140
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=20.61 E-value=3.2e+02 Score=21.66 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=58.1
Q ss_pred CCCHHHHhccCCC-----CCCCCCCCChhHHhhCCEEEEeccccCCCchHH-----HHHHHHHhc--------Cccc---
Q 031039 7 TLPEEVLGKMSAP-----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ-----FKAFLDATG--------GLWR--- 65 (167)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~d~~~~~~~~l~~aD~iIigsPtY~~~~~~~-----~k~flDrl~--------~~~~--- 65 (167)
.++++.+.+..++ .-..++.++.+...+....|.-+|-|+....++ +-.+..++. ..|.
T Consensus 75 ~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~ 154 (351)
T 3jtm_A 75 YVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAG 154 (351)
T ss_dssp CBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHH
T ss_pred CCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCcccc
Confidence 4677788765443 234566677888888999999999987654433 222222221 1232
Q ss_pred ----ccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcEEec
Q 031039 66 ----TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 107 (167)
Q Consensus 66 ----~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~vv~ 107 (167)
...+.||.++++|.+ ... ..+...+..+||.++.
T Consensus 155 ~~~~~~~l~gktvGIIG~G-----~IG---~~vA~~l~~~G~~V~~ 192 (351)
T 3jtm_A 155 IAYRAYDLEGKTIGTVGAG-----RIG---KLLLQRLKPFGCNLLY 192 (351)
T ss_dssp HHTTCCCSTTCEEEEECCS-----HHH---HHHHHHHGGGCCEEEE
T ss_pred ccCCcccccCCEEeEEEeC-----HHH---HHHHHHHHHCCCEEEE
Confidence 236899999999952 111 1455667778998874
No 141
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=20.32 E-value=1.6e+02 Score=20.11 Aligned_cols=79 Identities=15% Similarity=0.073 Sum_probs=42.1
Q ss_pred CCCChhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcE
Q 031039 25 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 25 ~~~~~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
......-+..+|++|+..-.-...-...++.|+..+.. ..-.++++.++++--................+...++.
T Consensus 88 ~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 163 (193)
T 2oil_A 88 RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD----HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL 163 (193)
T ss_dssp CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHT----TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE
Confidence 33335567899999997655444334455677777632 12356788888763211000001122444455566765
Q ss_pred Eec
Q 031039 105 FVP 107 (167)
Q Consensus 105 vv~ 107 (167)
++.
T Consensus 164 ~~~ 166 (193)
T 2oil_A 164 FLE 166 (193)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 142
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=20.21 E-value=2.4e+02 Score=22.32 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=37.4
Q ss_pred hhHHhhC---CEEEEeccccCCCchHHHHHHHHHhcCcccccCC-CCCeEEEEEccCCCCCCHHHHHHHHHHHHHHcCcE
Q 031039 29 PNELAEA---DGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 104 (167)
Q Consensus 29 ~~~l~~a---D~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l-~gK~~~~f~s~g~~~gg~~~~l~~l~~~l~~~g~~ 104 (167)
.+.+.++ |.||++.|.. .++..++.+.. .+ +|+.+ ...+.. .. .....+...+...|+.
T Consensus 73 ~e~~~~a~~~DvVi~~vp~~------~v~~vl~~l~~-----~l~~g~ii---Id~st~--~~-~~~~~~~~~l~~~g~~ 135 (358)
T 4e21_A 73 EEFCAKLVKPRVVWLMVPAA------VVDSMLQRMTP-----LLAANDIV---IDGGNS--HY-QDDIRRADQMRAQGIT 135 (358)
T ss_dssp HHHHHHSCSSCEEEECSCGG------GHHHHHHHHGG-----GCCTTCEE---EECSSC--CH-HHHHHHHHHHHTTTCE
T ss_pred HHHHhcCCCCCEEEEeCCHH------HHHHHHHHHHh-----hCCCCCEE---EeCCCC--Ch-HHHHHHHHHHHHCCCE
Confidence 3445667 9999999986 34555566532 23 33332 222221 22 2333566667778888
Q ss_pred EecCccc
Q 031039 105 FVPIGYT 111 (167)
Q Consensus 105 vv~~~~~ 111 (167)
+++.++.
T Consensus 136 ~vdapVs 142 (358)
T 4e21_A 136 YVDVGTS 142 (358)
T ss_dssp EEEEEEE
T ss_pred EEeCCCC
Confidence 8876654
No 143
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=20.16 E-value=73 Score=22.19 Aligned_cols=48 Identities=10% Similarity=0.143 Sum_probs=29.2
Q ss_pred hhHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccccCCCCCeEEEEEcc
Q 031039 29 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 80 (167)
Q Consensus 29 ~~~l~~aD~iIigsPtY~~~~~~~~k~flDrl~~~~~~~~l~gK~~~~f~s~ 80 (167)
..-+..+|++|+..-.-...-...++.|++.+.. ....++++.++++-
T Consensus 95 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~NK 142 (199)
T 2p5s_A 95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED----AAHETVPIMLVGNK 142 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH----HC---CCEEEEEEC
T ss_pred HHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHH----hcCCCCCEEEEEEC
Confidence 3457789999997665544444556667766621 12246788888763
Done!