Query 031040
Match_columns 167
No_of_seqs 171 out of 1100
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01813 UBP_N UBP ubiquitin pr 99.8 3.6E-20 7.7E-25 130.7 8.5 71 71-141 1-74 (74)
2 cd01812 BAG1_N Ubiquitin-like 99.8 1.2E-19 2.5E-24 123.8 8.4 71 71-141 1-71 (71)
3 cd01807 GDX_N ubiquitin-like d 99.8 1.4E-19 2.9E-24 126.1 8.4 72 71-142 1-73 (74)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 5.4E-19 1.2E-23 123.2 8.0 69 71-140 1-69 (74)
5 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 2.4E-18 5.2E-23 121.4 8.3 70 70-139 1-71 (73)
6 cd01797 NIRF_N amino-terminal 99.7 4.9E-18 1.1E-22 120.9 7.9 73 71-143 1-76 (78)
7 cd01805 RAD23_N Ubiquitin-like 99.7 8.5E-18 1.8E-22 116.6 8.6 71 71-141 1-74 (77)
8 cd01798 parkin_N amino-termina 99.7 6.1E-18 1.3E-22 116.4 7.5 68 73-140 1-69 (70)
9 cd01804 midnolin_N Ubiquitin-l 99.7 8.2E-18 1.8E-22 119.1 8.3 70 71-141 2-72 (78)
10 cd01809 Scythe_N Ubiquitin-lik 99.7 1E-17 2.2E-22 114.0 8.4 70 71-140 1-71 (72)
11 PTZ00044 ubiquitin; Provisiona 99.7 1.1E-17 2.4E-22 116.0 8.2 71 71-141 1-72 (76)
12 cd01794 DC_UbP_C dendritic cel 99.7 1E-17 2.2E-22 117.1 7.4 67 73-140 3-69 (70)
13 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.1E-17 2.4E-22 116.6 7.6 68 73-140 1-69 (74)
14 cd01796 DDI1_N DNA damage indu 99.7 2.2E-17 4.9E-22 114.9 7.7 67 72-138 2-69 (71)
15 cd01806 Nedd8 Nebb8-like ubiq 99.7 3.7E-17 7.9E-22 112.3 8.6 70 71-140 1-71 (76)
16 PF00240 ubiquitin: Ubiquitin 99.7 3.7E-17 7.9E-22 111.1 8.5 64 79-142 5-68 (69)
17 cd01802 AN1_N ubiquitin-like d 99.7 3.5E-17 7.7E-22 122.3 8.9 72 69-140 26-98 (103)
18 cd01803 Ubiquitin Ubiquitin. U 99.7 3.6E-17 7.7E-22 112.4 8.2 71 71-141 1-72 (76)
19 cd01808 hPLIC_N Ubiquitin-like 99.7 3.5E-17 7.7E-22 113.1 7.6 70 71-140 1-70 (71)
20 cd01792 ISG15_repeat1 ISG15 ub 99.7 9.2E-17 2E-21 113.8 7.5 71 71-141 3-76 (80)
21 cd01800 SF3a120_C Ubiquitin-li 99.7 1.4E-16 3.1E-21 111.8 7.5 65 77-141 5-69 (76)
22 smart00213 UBQ Ubiquitin homol 99.6 7.9E-16 1.7E-20 101.5 7.3 64 71-134 1-64 (64)
23 cd01790 Herp_N Homocysteine-re 99.6 8E-16 1.7E-20 111.0 7.9 70 71-140 2-78 (79)
24 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 1E-14 2.2E-19 104.4 5.5 53 88-140 19-74 (75)
25 TIGR00601 rad23 UV excision re 99.5 3.1E-14 6.7E-19 127.4 8.5 71 71-141 1-75 (378)
26 KOG0010 Ubiquitin-like protein 99.5 1.7E-14 3.6E-19 132.2 6.9 73 69-141 14-86 (493)
27 cd01799 Hoil1_N Ubiquitin-like 99.5 5E-14 1.1E-18 99.8 7.6 61 78-139 11-73 (75)
28 cd01763 Sumo Small ubiquitin-r 99.5 1.9E-13 4.2E-18 98.5 9.6 74 67-140 8-82 (87)
29 cd01769 UBL Ubiquitin-like dom 99.5 1.1E-13 2.5E-18 92.1 7.5 62 79-140 7-68 (69)
30 KOG0005 Ubiquitin-like protein 99.4 1.3E-13 2.9E-18 95.9 4.5 69 71-139 1-70 (70)
31 cd01814 NTGP5 Ubiquitin-like N 99.4 3.1E-13 6.8E-18 103.5 5.7 92 71-162 7-111 (113)
32 cd01795 USP48_C USP ubiquitin- 99.4 1.5E-12 3.2E-17 98.4 6.6 64 82-145 17-82 (107)
33 KOG0003 Ubiquitin/60s ribosoma 99.3 4.1E-13 9E-18 102.9 0.6 68 73-140 3-71 (128)
34 cd01789 Alp11_N Ubiquitin-like 99.3 1.5E-11 3.3E-16 88.5 8.4 70 71-140 2-80 (84)
35 PF11976 Rad60-SLD: Ubiquitin- 99.3 1.8E-11 3.8E-16 84.0 8.3 69 71-139 1-71 (72)
36 KOG0004 Ubiquitin/40S ribosoma 99.3 1.8E-12 3.9E-17 103.9 3.3 70 71-140 1-71 (156)
37 PF14560 Ubiquitin_2: Ubiquiti 99.3 2.1E-11 4.5E-16 87.4 7.8 71 70-140 1-82 (87)
38 KOG0011 Nucleotide excision re 99.2 1.9E-11 4.2E-16 107.9 6.5 71 71-141 1-74 (340)
39 KOG4361 BCL2-associated athano 99.1 1.5E-11 3.2E-16 109.3 2.6 121 46-166 31-163 (344)
40 KOG1872 Ubiquitin-specific pro 99.1 1.7E-10 3.8E-15 105.6 6.9 74 69-142 2-76 (473)
41 KOG4248 Ubiquitin-like protein 98.9 2.5E-09 5.4E-14 105.2 6.4 73 72-145 4-77 (1143)
42 KOG0001 Ubiquitin and ubiquiti 98.9 2.1E-08 4.5E-13 65.4 8.7 64 78-141 8-71 (75)
43 cd01788 ElonginB Ubiquitin-lik 98.9 9.3E-09 2E-13 79.3 7.6 69 71-139 3-78 (119)
44 cd01801 Tsc13_N Ubiquitin-like 98.8 7.3E-09 1.6E-13 72.9 6.2 52 87-138 20-74 (77)
45 PLN02560 enoyl-CoA reductase 98.8 9.2E-09 2E-13 90.1 7.9 69 71-139 3-81 (308)
46 cd00196 UBQ Ubiquitin-like pro 98.8 3.3E-08 7.1E-13 60.5 7.2 63 78-140 6-68 (69)
47 PF13881 Rad60-SLD_2: Ubiquiti 98.8 5.4E-08 1.2E-12 74.1 8.6 75 71-145 3-92 (111)
48 PF11543 UN_NPL4: Nuclear pore 98.6 8.8E-08 1.9E-12 68.9 5.7 70 70-139 4-78 (80)
49 KOG0006 E3 ubiquitin-protein l 98.5 1.5E-07 3.3E-12 83.9 5.6 60 80-139 14-73 (446)
50 PF08817 YukD: WXG100 protein 98.1 6.2E-06 1.3E-10 58.3 5.8 69 70-138 2-78 (79)
51 KOG4495 RNA polymerase II tran 97.7 0.00011 2.5E-09 55.6 6.0 69 70-138 2-79 (110)
52 KOG3493 Ubiquitin-like protein 97.6 2.1E-05 4.5E-10 55.7 1.1 60 79-138 11-70 (73)
53 PF11470 TUG-UBL1: GLUT4 regul 97.6 0.00027 5.9E-09 49.3 6.6 64 75-138 2-65 (65)
54 PF10302 DUF2407: DUF2407 ubiq 97.6 0.00015 3.2E-09 54.1 5.4 61 70-130 2-66 (97)
55 cd01811 OASL_repeat1 2'-5' oli 97.5 0.00043 9.3E-09 50.2 6.9 70 71-141 1-76 (80)
56 KOG1769 Ubiquitin-like protein 97.3 0.0019 4.2E-08 48.7 8.6 73 68-140 18-91 (99)
57 KOG3206 Alpha-tubulin folding 97.0 0.0018 3.9E-08 55.0 6.5 71 71-141 2-81 (234)
58 PF00789 UBX: UBX domain; Int 96.8 0.012 2.7E-07 41.0 7.9 70 69-138 5-80 (82)
59 PF15044 CLU_N: Mitochondrial 96.7 0.0032 7E-08 44.8 4.7 58 86-143 1-60 (76)
60 smart00666 PB1 PB1 domain. Pho 96.7 0.009 1.9E-07 41.4 6.8 46 71-116 2-47 (81)
61 COG5417 Uncharacterized small 96.7 0.011 2.3E-07 43.1 7.0 69 71-139 7-81 (81)
62 KOG0013 Uncharacterized conser 96.6 0.0015 3.3E-08 55.4 3.0 93 46-138 113-215 (231)
63 smart00166 UBX Domain present 96.1 0.056 1.2E-06 37.9 8.2 68 70-138 6-78 (80)
64 PF00564 PB1: PB1 domain; Int 96.0 0.039 8.5E-07 38.2 6.8 47 70-116 1-48 (84)
65 PRK06437 hypothetical protein; 95.9 0.058 1.3E-06 37.3 7.4 58 73-140 5-62 (67)
66 cd01767 UBX UBX (ubiquitin reg 95.7 0.11 2.4E-06 36.0 8.3 65 71-138 5-74 (77)
67 cd06406 PB1_P67 A PB1 domain i 95.7 0.052 1.1E-06 39.6 6.6 45 70-117 4-48 (80)
68 cd06407 PB1_NLP A PB1 domain i 95.4 0.071 1.5E-06 38.5 6.4 45 71-115 1-46 (82)
69 cd01770 p47_UBX p47-like ubiqu 95.3 0.15 3.3E-06 36.2 8.0 66 70-136 6-75 (79)
70 PRK08364 sulfur carrier protei 95.1 0.22 4.7E-06 34.4 8.0 62 70-140 4-65 (70)
71 KOG1639 Steroid reductase requ 95.0 0.068 1.5E-06 46.8 6.2 57 83-139 16-77 (297)
72 cd05992 PB1 The PB1 domain is 94.9 0.09 2E-06 36.1 5.6 46 71-116 1-47 (81)
73 cd01772 SAKS1_UBX SAKS1-like U 94.6 0.39 8.5E-06 33.9 8.2 67 70-138 6-77 (79)
74 cd01774 Faf1_like2_UBX Faf1 ik 94.3 0.54 1.2E-05 34.0 8.7 67 70-138 6-82 (85)
75 cd01771 Faf1_UBX Faf1 UBX doma 94.2 0.61 1.3E-05 33.3 8.6 69 69-138 3-77 (80)
76 cd00754 MoaD Ubiquitin domain 94.0 0.28 6.1E-06 33.5 6.5 58 78-140 14-75 (80)
77 PF13019 Telomere_Sde2: Telome 94.0 0.3 6.5E-06 39.8 7.5 64 71-134 1-73 (162)
78 cd01773 Faf1_like1_UBX Faf1 ik 93.9 0.76 1.7E-05 33.4 8.8 70 69-139 4-79 (82)
79 COG5227 SMT3 Ubiquitin-like pr 93.9 0.22 4.7E-06 37.6 6.0 71 69-139 23-94 (103)
80 cd06396 PB1_NBR1 The PB1 domai 93.8 0.46 1E-05 34.6 7.4 60 71-146 1-62 (81)
81 TIGR02958 sec_mycoba_snm4 secr 93.4 0.41 8.8E-06 44.2 8.3 70 71-140 3-79 (452)
82 cd06410 PB1_UP2 Uncharacterize 93.1 0.44 9.5E-06 35.5 6.6 51 54-114 5-56 (97)
83 KOG4250 TANK binding protein k 93.0 0.38 8.3E-06 47.1 7.7 49 70-118 315-363 (732)
84 KOG4583 Membrane-associated ER 93.0 0.044 9.5E-07 49.6 1.3 60 70-129 9-73 (391)
85 PLN02799 Molybdopterin synthas 92.4 0.76 1.6E-05 32.0 6.7 56 80-140 19-77 (82)
86 KOG2982 Uncharacterized conser 92.4 0.23 5E-06 45.2 4.9 68 72-139 340-415 (418)
87 cd06408 PB1_NoxR The PB1 domai 92.3 0.75 1.6E-05 33.9 6.7 45 70-115 2-46 (86)
88 cd06398 PB1_Joka2 The PB1 doma 92.1 0.74 1.6E-05 33.9 6.6 45 72-116 2-52 (91)
89 KOG0012 DNA damage inducible p 91.3 0.39 8.4E-06 43.8 5.2 61 78-138 11-73 (380)
90 PF14836 Ubiquitin_3: Ubiquiti 91.1 1.1 2.4E-05 33.1 6.6 58 80-138 14-77 (88)
91 PRK01777 hypothetical protein; 91.0 2.8 6.1E-05 31.1 8.7 63 69-140 2-75 (95)
92 cd00565 ThiS ThiaminS ubiquiti 90.7 1.3 2.9E-05 29.7 6.3 53 83-140 8-60 (65)
93 PF14453 ThiS-like: ThiS-like 90.6 0.9 2E-05 31.1 5.3 47 83-140 9-55 (57)
94 TIGR01682 moaD molybdopterin c 90.1 2.1 4.5E-05 29.7 7.1 58 78-140 14-75 (80)
95 PRK06488 sulfur carrier protei 90.1 2.1 4.6E-05 28.7 6.9 58 75-140 3-60 (65)
96 cd06411 PB1_p51 The PB1 domain 90.0 0.84 1.8E-05 33.2 5.0 42 72-116 2-43 (78)
97 PF12754 Blt1: Cell-cycle cont 89.1 0.12 2.5E-06 46.1 0.0 62 68-129 76-158 (309)
98 COG2104 ThiS Sulfur transfer p 88.2 4.3 9.3E-05 28.4 7.4 61 73-140 3-63 (68)
99 TIGR01687 moaD_arch MoaD famil 88.2 4.1 8.9E-05 28.5 7.5 59 78-140 14-83 (88)
100 cd06397 PB1_UP1 Uncharacterize 87.6 1.8 3.9E-05 31.8 5.4 43 72-114 2-44 (82)
101 PRK06083 sulfur carrier protei 87.5 5.8 0.00013 28.7 8.0 64 70-140 16-79 (84)
102 TIGR01683 thiS thiamine biosyn 87.5 3.4 7.3E-05 27.7 6.4 53 83-140 7-59 (64)
103 PRK05659 sulfur carrier protei 87.1 3.2 6.9E-05 27.7 6.1 53 83-140 9-61 (66)
104 cd01615 CIDE_N CIDE_N domain, 86.3 5.5 0.00012 28.9 7.3 65 73-140 5-71 (78)
105 smart00266 CAD Domains present 86.2 5.6 0.00012 28.6 7.2 64 74-140 4-69 (74)
106 PRK05863 sulfur carrier protei 85.5 4.1 8.9E-05 27.6 6.1 52 83-140 9-60 (65)
107 PF02597 ThiS: ThiS family; I 84.9 3.4 7.4E-05 27.7 5.4 58 81-140 13-72 (77)
108 PF02017 CIDE-N: CIDE-N domain 84.8 3.6 7.7E-05 29.8 5.7 56 80-140 14-71 (78)
109 cd06409 PB1_MUG70 The MUG70 pr 83.8 3.7 8.1E-05 30.1 5.5 63 74-150 4-70 (86)
110 PRK06944 sulfur carrier protei 83.7 6.2 0.00013 26.1 6.2 52 83-140 9-60 (65)
111 cd06539 CIDE_N_A CIDE_N domain 83.5 7.8 0.00017 28.2 7.0 65 73-140 5-71 (78)
112 PF14451 Ub-Mut7C: Mut7-C ubiq 83.1 5.6 0.00012 28.7 6.1 52 80-140 23-75 (81)
113 KOG2086 Protein tyrosine phosp 82.6 2.3 4.9E-05 39.0 4.8 68 69-137 306-377 (380)
114 PRK07440 hypothetical protein; 81.4 15 0.00032 25.4 7.6 61 73-140 5-65 (70)
115 PF11834 DUF3354: Domain of un 80.7 2.3 5E-05 30.0 3.3 44 90-139 26-69 (69)
116 cd06404 PB1_aPKC PB1 domain is 80.6 4.6 9.9E-05 29.7 5.0 38 71-108 1-38 (83)
117 cd01764 Urm1 Urm1-like ubuitin 79.9 5.8 0.00013 29.0 5.4 59 80-140 17-89 (94)
118 cd01760 RBD Ubiquitin-like dom 79.6 10 0.00022 26.8 6.3 45 72-117 3-47 (72)
119 cd06536 CIDE_N_ICAD CIDE_N dom 79.4 11 0.00023 27.5 6.5 65 73-140 5-73 (80)
120 cd06537 CIDE_N_B CIDE_N domain 78.1 13 0.00027 27.3 6.6 64 73-140 5-70 (81)
121 cd06538 CIDE_N_FSP27 CIDE_N do 76.3 16 0.00035 26.5 6.7 64 74-140 6-70 (79)
122 PTZ00380 microtubule-associate 76.2 3.8 8.3E-05 32.0 3.7 48 81-128 42-89 (121)
123 PF14533 USP7_C2: Ubiquitin-sp 75.9 18 0.00039 30.0 7.8 65 70-136 20-96 (213)
124 PF11620 GABP-alpha: GA-bindin 75.7 9.7 0.00021 28.3 5.5 59 81-139 4-62 (88)
125 PRK11130 moaD molybdopterin sy 74.5 22 0.00049 24.7 7.0 51 84-139 19-75 (81)
126 COG5100 NPL4 Nuclear pore prot 74.1 9.2 0.0002 36.0 6.1 74 72-147 4-86 (571)
127 cd01775 CYR1_RA Ubiquitin doma 73.7 18 0.00039 27.4 6.6 39 78-116 11-51 (97)
128 PF12436 USP7_ICP0_bdg: ICP0-b 72.7 4.6 0.0001 34.2 3.6 72 68-139 66-150 (249)
129 PRK08053 sulfur carrier protei 72.4 26 0.00056 23.5 6.7 53 83-140 9-61 (66)
130 PRK07696 sulfur carrier protei 71.5 21 0.00045 24.3 6.1 52 84-140 10-62 (67)
131 PF10209 DUF2340: Uncharacteri 71.5 15 0.00033 28.8 6.0 56 86-141 22-108 (122)
132 smart00455 RBD Raf-like Ras-bi 71.3 16 0.00034 25.4 5.5 43 73-116 4-46 (70)
133 smart00295 B41 Band 4.1 homolo 71.3 13 0.00029 28.8 5.8 68 70-138 5-80 (207)
134 KOG2561 Adaptor protein NUB1, 71.3 1.5 3.3E-05 41.5 0.4 84 58-141 25-111 (568)
135 PF12053 DUF3534: Domain of un 67.9 46 0.00099 26.7 8.1 69 71-140 1-79 (145)
136 PF09379 FERM_N: FERM N-termin 66.0 14 0.00031 24.9 4.4 52 80-131 7-65 (80)
137 PF00788 RA: Ras association ( 65.4 23 0.0005 24.2 5.4 44 70-113 4-52 (93)
138 cd01768 RA RA (Ras-associating 64.9 28 0.0006 24.1 5.7 35 79-113 12-48 (87)
139 PF08337 Plexin_cytopl: Plexin 63.2 25 0.00054 33.7 6.7 74 68-141 187-289 (539)
140 PRK11840 bifunctional sulfur c 61.4 38 0.00082 30.6 7.2 53 83-140 9-61 (326)
141 PF11069 DUF2870: Protein of u 59.8 4.4 9.6E-05 30.7 0.9 28 111-138 3-31 (98)
142 KOG3439 Protein conjugation fa 59.6 48 0.001 25.8 6.6 51 69-119 29-84 (116)
143 smart00314 RA Ras association 58.5 47 0.001 23.1 6.0 43 71-113 5-51 (90)
144 PF08825 E2_bind: E2 binding d 57.9 9.7 0.00021 27.6 2.4 55 84-139 1-69 (84)
145 smart00144 PI3K_rbd PI3-kinase 57.6 61 0.0013 24.1 6.8 34 69-102 16-51 (108)
146 cd01787 GRB7_RA RA (RAS-associ 57.3 46 0.00099 24.5 5.9 66 70-136 4-80 (85)
147 PF02196 RBD: Raf-like Ras-bin 56.8 53 0.0012 22.7 6.0 51 71-122 3-55 (71)
148 cd01611 GABARAP Ubiquitin doma 54.8 26 0.00056 26.6 4.4 54 84-138 45-103 (112)
149 PF02991 Atg8: Autophagy prote 54.8 24 0.00053 26.5 4.2 44 85-128 38-82 (104)
150 PF02505 MCR_D: Methyl-coenzym 53.5 29 0.00063 28.2 4.7 71 68-145 65-144 (153)
151 PF00276 Ribosomal_L23: Riboso 53.1 32 0.0007 24.9 4.5 41 80-120 21-62 (91)
152 KOG0007 Splicing factor 3a, su 52.5 6.4 0.00014 34.9 0.9 49 77-125 290-339 (341)
153 PRK09974 putative regulator Pr 50.3 20 0.00043 27.6 3.2 22 43-64 34-55 (111)
154 PF14533 USP7_C2: Ubiquitin-sp 49.8 18 0.00039 29.9 3.1 30 80-109 133-162 (213)
155 cd01612 APG12_C Ubiquitin-like 48.5 54 0.0012 23.8 5.1 55 84-139 20-79 (87)
156 KOG4842 Protein involved in si 48.1 6.3 0.00014 34.7 0.1 40 77-116 10-49 (278)
157 PF14732 UAE_UbL: Ubiquitin/SU 48.1 28 0.0006 25.1 3.5 56 84-139 2-67 (87)
158 PRK12280 rplW 50S ribosomal pr 47.4 67 0.0015 26.2 5.9 69 80-148 23-100 (158)
159 PF06234 TmoB: Toluene-4-monoo 46.4 1.2E+02 0.0026 22.4 7.0 63 77-139 12-82 (85)
160 PF08783 DWNN: DWNN domain; I 46.0 36 0.00078 24.3 3.7 43 74-116 4-49 (74)
161 cd06535 CIDE_N_CAD CIDE_N doma 44.5 1.2E+02 0.0026 22.0 6.5 63 74-140 6-70 (77)
162 PLN03192 Voltage-dependent pot 44.2 33 0.00072 33.6 4.4 50 89-143 770-820 (823)
163 cd06405 PB1_Mekk2_3 The PB1 do 43.1 55 0.0012 23.9 4.3 45 71-118 1-45 (79)
164 PF03658 Ub-RnfH: RnfH family 43.0 1.3E+02 0.0028 22.0 7.2 65 71-140 1-72 (84)
165 COG0089 RplW Ribosomal protein 42.5 51 0.0011 24.7 4.2 38 80-117 22-60 (94)
166 PRK05738 rplW 50S ribosomal pr 42.3 62 0.0014 23.6 4.6 40 80-119 21-61 (92)
167 TIGR03636 L23_arch archaeal ri 41.2 65 0.0014 23.0 4.5 35 80-114 15-49 (77)
168 cd06401 PB1_TFG The PB1 domain 41.2 1.1E+02 0.0025 22.3 5.8 41 72-112 2-45 (81)
169 cd06403 PB1_Par6 The PB1 domai 40.9 1.1E+02 0.0024 22.4 5.6 45 71-115 1-47 (80)
170 PRK14548 50S ribosomal protein 39.8 68 0.0015 23.3 4.5 35 80-114 22-56 (84)
171 PF07929 PRiA4_ORF3: Plasmid p 39.3 98 0.0021 24.5 5.7 44 71-114 7-52 (179)
172 PF10790 DUF2604: Protein of U 39.1 1.2E+02 0.0025 21.8 5.4 62 80-141 6-71 (76)
173 PF00794 PI3K_rbd: PI3-kinase 38.7 1.5E+02 0.0033 21.4 7.3 60 69-128 15-84 (106)
174 PF04126 Cyclophil_like: Cyclo 37.5 38 0.00082 25.7 2.9 29 71-99 1-29 (120)
175 PTZ00071 40S ribosomal protein 37.3 1.1E+02 0.0024 24.2 5.6 27 88-114 34-60 (132)
176 PF15484 DUF4642: Domain of un 37.1 17 0.00037 29.5 1.1 14 50-64 50-63 (156)
177 KOG2689 Predicted ubiquitin re 36.9 86 0.0019 28.0 5.4 69 68-138 210-284 (290)
178 cd01777 SNX27_RA Ubiquitin dom 36.4 51 0.0011 24.4 3.4 41 71-112 4-44 (87)
179 PF12436 USP7_ICP0_bdg: ICP0-b 35.5 59 0.0013 27.5 4.1 43 71-113 177-223 (249)
180 TIGR03595 Obg_CgtA_exten Obg f 35.1 26 0.00057 24.3 1.6 18 122-139 46-63 (69)
181 PF04360 Serglycin: Serglycin 34.8 31 0.00068 27.9 2.2 11 43-53 110-120 (150)
182 PF09269 DUF1967: Domain of un 34.8 22 0.00048 24.6 1.2 17 122-138 46-62 (69)
183 CHL00030 rpl23 ribosomal prote 34.7 83 0.0018 23.3 4.3 39 80-118 20-59 (93)
184 KOG4598 Putative ubiquitin-spe 34.6 36 0.00078 34.5 2.9 57 80-138 877-939 (1203)
185 PRK08453 fliD flagellar cappin 34.3 63 0.0014 31.9 4.5 49 71-120 129-188 (673)
186 COG0138 PurH AICAR transformyl 34.2 30 0.00065 33.1 2.3 19 46-64 360-380 (515)
187 cd01776 Rin1_RA Ubiquitin doma 34.0 1.3E+02 0.0029 22.3 5.2 36 78-113 12-48 (87)
188 cd01818 TIAM1_RBD Ubiquitin do 33.4 1.1E+02 0.0023 22.4 4.5 38 78-115 8-45 (77)
189 COG5131 URM1 Ubiquitin-like pr 33.4 1.9E+02 0.0041 21.8 6.0 61 78-140 16-91 (96)
190 PF03671 Ufm1: Ubiquitin fold 33.1 1.9E+02 0.0041 21.0 6.4 60 80-139 16-76 (76)
191 PF01808 AICARFT_IMPCHas: AICA 32.3 24 0.00053 31.6 1.3 17 48-64 230-248 (315)
192 cd01817 RGS12_RBD Ubiquitin do 32.1 1.4E+02 0.0031 21.3 5.0 39 79-117 9-47 (73)
193 PRK01178 rps24e 30S ribosomal 31.3 1.6E+02 0.0036 22.0 5.5 35 70-111 18-52 (99)
194 PF01562 Pep_M12B_propep: Repr 30.1 1.6E+02 0.0034 21.8 5.2 78 49-126 7-93 (131)
195 PF02192 PI3K_p85B: PI3-kinase 29.1 69 0.0015 23.0 3.0 21 82-102 2-22 (78)
196 PF09138 Urm1: Urm1 (Ubiquitin 28.9 32 0.00069 25.8 1.2 59 80-140 18-91 (96)
197 PRK09908 xanthine dehydrogenas 28.5 1.3E+02 0.0029 24.4 4.9 70 69-141 5-81 (159)
198 COG1551 CsrA RNA-binding globa 27.8 2.4E+02 0.0051 20.4 5.6 47 56-102 1-50 (73)
199 smart00798 AICARFT_IMPCHas AIC 27.8 31 0.00066 30.9 1.2 18 47-64 225-244 (311)
200 COG2004 RPS24A Ribosomal prote 27.7 2E+02 0.0043 22.1 5.4 36 71-113 20-55 (107)
201 PF04110 APG12: Ubiquitin-like 27.5 1.5E+02 0.0032 21.8 4.6 36 82-117 18-53 (87)
202 cd02413 40S_S3_KH K homology R 27.4 2.2E+02 0.0049 20.1 5.4 42 71-113 32-73 (81)
203 PF05678 VQ: VQ motif; InterP 27.0 59 0.0013 19.5 2.0 18 91-108 11-28 (31)
204 PF13180 PDZ_2: PDZ domain; PD 26.9 1.3E+02 0.0028 20.3 4.0 51 81-139 16-68 (82)
205 PF14284 PcfJ: PcfJ-like prote 26.7 26 0.00057 28.0 0.5 18 47-64 127-144 (169)
206 KOG3391 Transcriptional co-rep 26.6 50 0.0011 26.7 2.1 75 70-145 27-140 (151)
207 TIGR03260 met_CoM_red_D methyl 26.5 1.7E+02 0.0036 23.8 5.1 55 68-128 64-118 (150)
208 smart00143 PI3K_p85B PI3-kinas 25.4 81 0.0018 22.8 2.8 22 82-103 2-23 (78)
209 PRK00568 carbon storage regula 25.0 1.3E+02 0.0028 21.8 3.8 46 56-101 1-53 (76)
210 PF03610 EIIA-man: PTS system 25.0 1.7E+02 0.0037 21.2 4.6 35 80-114 28-63 (116)
211 PRK04870 histidinol-phosphate 24.6 1.1E+02 0.0023 26.2 3.9 54 91-146 64-117 (356)
212 PF02824 TGS: TGS domain; Int 23.9 1.6E+02 0.0035 19.4 3.9 59 71-139 1-59 (60)
213 PRK09105 putative aminotransfe 23.6 84 0.0018 27.4 3.1 53 91-146 79-131 (370)
214 PRK06959 putative threonine-ph 22.1 90 0.002 26.9 3.0 54 88-147 52-106 (339)
215 COG4009 Uncharacterized protei 22.1 3.2E+02 0.007 20.2 5.4 36 69-105 39-74 (88)
216 PF08299 Bac_DnaA_C: Bacterial 22.0 43 0.00093 23.0 0.8 20 91-110 1-20 (70)
217 PRK01712 carbon storage regula 21.8 1.8E+02 0.0039 20.3 3.9 45 56-100 1-48 (64)
218 PRK13293 F420-0--gamma-glutamy 21.6 76 0.0017 27.5 2.4 58 46-108 83-145 (245)
219 PRK05841 flgE flagellar hook p 21.2 1.2E+02 0.0025 29.7 3.7 40 69-108 247-296 (603)
220 PF06622 SepQ: SepQ protein; 21.0 1.3E+02 0.0027 26.8 3.6 70 78-148 130-199 (305)
221 cd06452 SepCysS Sep-tRNA:Cys-t 20.9 1.2E+02 0.0025 26.0 3.4 52 84-139 38-89 (361)
222 PRK05387 histidinol-phosphate 20.7 99 0.0021 26.1 2.9 53 91-146 61-113 (353)
223 PF00550 PP-binding: Phosphopa 20.5 1.2E+02 0.0025 19.3 2.6 28 94-130 2-29 (67)
224 TIGR00355 purH phosphoribosyla 20.3 64 0.0014 30.9 1.8 17 48-64 358-376 (511)
225 PRK12765 flagellar capping pro 20.1 2E+02 0.0044 27.7 5.2 34 69-102 131-164 (595)
226 PRK14807 histidinol-phosphate 20.0 1.8E+02 0.0038 24.9 4.3 54 91-147 60-113 (351)
No 1
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.82 E-value=3.6e-20 Score=130.67 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=68.2
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE---cCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF---KGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif---kGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|.|+|+++.|+|+|++++||++||++|++.||+||++|||+| +|+.++|+.+|++|+|++|++|+||++
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999999999999996 999999999999999999999999863
No 2
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.81 E-value=1.2e-19 Score=123.80 Aligned_cols=71 Identities=55% Similarity=0.904 Sum_probs=68.5
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|+++++.++++|++++||++||++|++.+|+||++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999864
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.81 E-value=1.4e-19 Score=126.08 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=66.8
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
|+|+|++ .++++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|+..|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 4677776 45788999999999999999999999999999999999999999999999999999999998765
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.78 E-value=5.4e-19 Score=123.24 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=65.6
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++. +++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|+.
T Consensus 1 mqi~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 1 MQLFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred CEEEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 57888886 6899999999999999999999999999999999999999999999999999999999975
No 5
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.76 E-value=2.4e-18 Score=121.41 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=65.9
Q ss_pred eEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 70 SITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
+|.|+|++ .++.+.++|++++||++||++|++.+|+||++|||+|.|+.|+|+.+|++|||++|++|||-
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 47899998 45889999999999999999999999999999999999999999999999999999999984
No 6
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.75 E-value=4.9e-18 Score=120.86 Aligned_cols=73 Identities=27% Similarity=0.354 Sum_probs=64.9
Q ss_pred EEEEEee-CCE-EEEEE-EcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCc
Q 031040 71 ITIRVST-VSK-WHDIS-IKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPA 143 (167)
Q Consensus 71 I~I~Vk~-g~~-~~~Ve-V~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~ 143 (167)
|+|+|++ .++ .+.++ +++++||++||++|++.+|+|+++|||+|+||+|+|+.+|++|||+++++|+|+..+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 5677786 334 46885 8999999999999999999999999999999999999999999999999999987543
No 7
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.74 E-value=8.5e-18 Score=116.63 Aligned_cols=71 Identities=25% Similarity=0.393 Sum_probs=65.4
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCC--CCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGL--EPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGV--ppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|++ .++++.++|++++||.+||++|++.+|+ |+++|+|+|+|++|+|+.+|++|||++|++|+++..
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 4677776 4588999999999999999999999999 999999999999999999999999999999998753
No 8
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.74 E-value=6.1e-18 Score=116.41 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=62.8
Q ss_pred EEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|.|++ .+.++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|+.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34555 457889999999999999999999999999999999999999999999999999999999974
No 9
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.74 E-value=8.2e-18 Score=119.14 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=65.0
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|+. .++.++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||+++++|+|+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence 6788886 357889999999999999999999999999999999999999998 999999999999999864
No 10
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.74 E-value=1e-17 Score=114.05 Aligned_cols=70 Identities=29% Similarity=0.415 Sum_probs=65.4
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++ .++.+.+++++++||++||++|++.+|+||+.|+|+|+|+.|+|+.+|++|||+++++|+|+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 5788887 447899999999999999999999999999999999999999999999999999999999874
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=1.1e-17 Score=115.96 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=66.2
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|++ .++++.++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|+++++|+|+..
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence 5688887 5578999999999999999999999999999999999999999999999999999999999753
No 12
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.73 E-value=1e-17 Score=117.05 Aligned_cols=67 Identities=30% Similarity=0.399 Sum_probs=61.9
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+..+| +++.++|++++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+|+++++|+|+.
T Consensus 3 vk~~~G-~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 3 VRLSTG-KDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred EEcCCC-CEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 444444 7899999999999999999999999999999999999999999999999999999999974
No 13
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.73 E-value=1.1e-17 Score=116.58 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=62.7
Q ss_pred EEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|++ .++++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 35565 347899999999999999999999999999999999999999999999999999999999874
No 14
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.72 E-value=2.2e-17 Score=114.86 Aligned_cols=67 Identities=25% Similarity=0.468 Sum_probs=60.5
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCc-chhhhcCCCCCCEEEE
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDN-EFLHMVGVRDKDKVLL 138 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~-~tL~~~GIkdgskL~L 138 (167)
+|+...+++++.|+|++++||++||++|++.+|+|+++|+|+|+|++|+|+ .+|++|||+++++|+|
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 444443457899999999999999999999999999999999999999887 6899999999999987
No 15
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.72 E-value=3.7e-17 Score=112.35 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=65.2
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|+. +++++.++|+++.||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|+|++|++|+|+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 4677776 457889999999999999999999999999999999999999999999999999999999975
No 16
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.72 E-value=3.7e-17 Score=111.10 Aligned_cols=64 Identities=28% Similarity=0.553 Sum_probs=61.1
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 79 SKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 79 ~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
++.+.++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|+..|
T Consensus 5 g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 5 GKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp SEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 4789999999999999999999999999999999999999999999999999999999998654
No 17
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.71 E-value=3.5e-17 Score=122.35 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=67.7
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+.|+|+|++ .++++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+.
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 468899997 558899999999999999999999999999999999999999999999999999999999974
No 18
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.71 E-value=3.6e-17 Score=112.41 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=65.8
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|++ +++.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 4678886 4578899999999999999999999999999999999999999999999999999999999753
No 19
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.71 E-value=3.5e-17 Score=113.06 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=63.0
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++....+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|+.
T Consensus 1 ~~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 4677776332358999999999999999999999999999999999999999999999999999999874
No 20
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.69 E-value=9.2e-17 Score=113.78 Aligned_cols=71 Identities=24% Similarity=0.234 Sum_probs=66.2
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE--EEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRL--LFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL--ifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|+. .++++.++|++++||++||++|++.+|+|+++|+| +|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 6788887 45788999999999999999999999999999999 89999999999999999999999999864
No 21
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.68 E-value=1.4e-16 Score=111.80 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=61.9
Q ss_pred eCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 77 TVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 77 ~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.++++++++|++++||++||++|+..+|+||++|+|+|+|+.|+|+.+|++|+|+++++|+|+..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999864
No 22
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.64 E-value=7.9e-16 Score=101.46 Aligned_cols=64 Identities=30% Similarity=0.464 Sum_probs=59.7
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCC
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKD 134 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgs 134 (167)
|+|+|++.+..+.++|++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 5788887556889999999999999999999999999999999999999999999999999985
No 23
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.64 E-value=8e-16 Score=110.96 Aligned_cols=70 Identities=30% Similarity=0.291 Sum_probs=60.8
Q ss_pred EEEEEee-CCEE--EEEEEcCCCCHHHHHHHHHhhhC--CCCCceEEEEcCeecCCcchhhhcC--CCCCCEEEEec
Q 031040 71 ITIRVST-VSKW--HDISIKATSTFGELKMILSMVSG--LEPREQRLLFKGKEREDNEFLHMVG--VRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~--~~VeV~~t~TV~eLK~~Ia~~TG--Vppe~QKLifkGK~LdD~~tL~~~G--IkdgskL~Lv~ 140 (167)
|+|+||. .+.. ++|++++++||++||++|++..+ .||++|||||+||.|+|+.+|++|+ ++++.+||||-
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 6788887 4455 55666899999999999999874 5579999999999999999999996 99999999973
No 24
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.54 E-value=1e-14 Score=104.45 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHhhh--CCC-CCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 88 ATSTFGELKMILSMVS--GLE-PREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 88 ~t~TV~eLK~~Ia~~T--GVp-pe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.++||++||++|++.+ |++ +++|||+|+||.|+|+.+|++|||+++++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4899999999999997 475 9999999999999999999999999999999985
No 25
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=3.1e-14 Score=127.44 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=66.0
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhC---CCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSG---LEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TG---Vppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+||+ .++++.|+|++++||.+||++|+..+| +|+++|||+|+||.|+|+.+|++|+|+++++|++|..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 5788887 457899999999999999999999999 9999999999999999999999999999999988754
No 26
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.52 E-value=1.7e-14 Score=132.21 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=69.9
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
..|+|+||+.+.++++.|..++||.+||+.|+..+++|+++|+|||.||.|+|++||..|||+||.|||||..
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEec
Confidence 4599999998789999999999999999999999999999999999999999999999999999999999964
No 27
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.51 E-value=5e-14 Score=99.85 Aligned_cols=61 Identities=25% Similarity=0.305 Sum_probs=56.0
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecC-CcchhhhcCCC-CCCEEEEe
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKERE-DNEFLHMVGVR-DKDKVLLL 139 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~Ld-D~~tL~~~GIk-dgskL~Lv 139 (167)
.+.++.++|++++||++||++|++.+|+||++|+| |.|+.|. |+.+|++|||+ +|++|+|.
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 34678899999999999999999999999999999 9999985 77999999999 88999984
No 28
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.50 E-value=1.9e-13 Score=98.54 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
....|+|+|++ .+..+.+.|.+++|+..||+++++..|+|+++|+|+|+|+.|+|+.|+++|+++++|+|+++.
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 45679999997 357889999999999999999999999999999999999999999999999999999999873
No 29
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.49 E-value=1.1e-13 Score=92.11 Aligned_cols=62 Identities=27% Similarity=0.479 Sum_probs=59.1
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 79 SKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 79 ~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+..+.+.+++++||++||++|+..+|+|++.|+|+|+|+.|+|+.+|.+|+|++++.|+++.
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 57788999999999999999999999999999999999999999999999999999999874
No 30
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.3e-13 Score=95.85 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=63.3
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
|.|+|++ .++.++++|+|+++|..+|+.+++..|+||.+|+|+|.||++.|+.+-..|++.-|+.|||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 3566776 34778999999999999999999999999999999999999999999999999999999985
No 31
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.41 E-value=3.1e-13 Score=103.46 Aligned_cols=92 Identities=17% Similarity=0.085 Sum_probs=71.6
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhh-----hCCC--CCceEEEEcCeecCCcchhhhcC------CCCCCEEE
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMV-----SGLE--PREQRLLFKGKEREDNEFLHMVG------VRDKDKVL 137 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~-----TGVp--pe~QKLifkGK~LdD~~tL~~~G------IkdgskL~ 137 (167)
|+++...|...=+..+++++||++||++|++. .|+| +++|||||.||.|+|+.||++|+ +.-..++|
T Consensus 7 ~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmH 86 (113)
T cd01814 7 IKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMH 86 (113)
T ss_pred EEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEE
Confidence 44444456555567889999999999999944 4556 99999999999999999999999 77789999
Q ss_pred EecCCchhhhhhhccccCCcccccc
Q 031040 138 LLEDPAIKDMKLHGLRGGQPIGTAY 162 (167)
Q Consensus 138 Lv~~p~~~~~k~~~~~~~~~~~~~~ 162 (167)
|+.-|...+++-.....+...+..|
T Consensus 87 vvlr~~~~~~~~~k~~~~~~~~~~c 111 (113)
T cd01814 87 VVVQPPLADKKTEKKVDKAPKAVIC 111 (113)
T ss_pred EEecCCCCCccccccccCCcccCCC
Confidence 9988777777665554444444444
No 32
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.36 E-value=1.5e-12 Score=98.41 Aligned_cols=64 Identities=27% Similarity=0.365 Sum_probs=57.3
Q ss_pred EEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecC-CcchhhhcCCCCCCEEEEec-CCchh
Q 031040 82 HDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKERE-DNEFLHMVGVRDKDKVLLLE-DPAIK 145 (167)
Q Consensus 82 ~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~Ld-D~~tL~~~GIkdgskL~Lv~-~p~~~ 145 (167)
..++|++++||++||.+|.+.++|+|++|+|+|.|+.|. |..||++|||..++.|+|.. .|...
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP~~d 82 (107)
T cd01795 17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPIAD 82 (107)
T ss_pred ceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCCccc
Confidence 468899999999999999999999999999999999985 56899999999999999875 45443
No 33
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.1e-13 Score=102.86 Aligned_cols=68 Identities=25% Similarity=0.393 Sum_probs=62.4
Q ss_pred EEEe-eCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVS-TVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk-~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++++ ..+++..|+|.|++||..||++|....|+||++|+|+|+|++|+|.-||++|||+.-|+|+++.
T Consensus 3 ~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~ 71 (128)
T KOG0003|consen 3 IFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
T ss_pred EEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhH
Confidence 3444 3557889999999999999999999999999999999999999999999999999999999873
No 34
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.30 E-value=1.5e-11 Score=88.46 Aligned_cols=70 Identities=26% Similarity=0.391 Sum_probs=58.8
Q ss_pred EEEEEeeC--CEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE-EEcCe-----ec-CCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVSTV--SKWHDISIKATSTFGELKMILSMVSGLEPREQRL-LFKGK-----ER-EDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~g--~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL-ifkGK-----~L-dD~~tL~~~GIkdgskL~Lv~ 140 (167)
++|.|... ....+..++++.||.+||++|+..||+||+.|+| +|.|+ .| +|..+|+.||++||..||++.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 34555543 4555666999999999999999999999999999 58888 45 677899999999999999985
No 35
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.29 E-value=1.8e-11 Score=83.98 Aligned_cols=69 Identities=29% Similarity=0.438 Sum_probs=62.1
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCC-CceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEP-REQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp-e~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
|+|+|+. +++.+.+.|.++.+|..|++.+++..|+|+ +.++|+|.|+.|+++.|++++|++++|.|.++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 5677776 457899999999999999999999999999 99999999999999999999999999999875
No 36
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.8e-12 Score=103.95 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=64.5
Q ss_pred EEEEEeeCC-EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVSTVS-KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|.|+|++-. .+...+|.+++||..+|++|++..||||++|+|||.|++|+|..+|++|+|+..++|+|+-
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l 71 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEE
Confidence 467788633 6889999999999999999999999999999999999999999999999999999999974
No 37
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.27 E-value=2.1e-11 Score=87.45 Aligned_cols=71 Identities=21% Similarity=0.387 Sum_probs=58.4
Q ss_pred eEEEEEeeCCE---EEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc----Ce---ec-CCcchhhhcCCCCCCEEEE
Q 031040 70 SITIRVSTVSK---WHDISIKATSTFGELKMILSMVSGLEPREQRLLFK----GK---ER-EDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 70 ~I~I~Vk~g~~---~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk----GK---~L-dD~~tL~~~GIkdgskL~L 138 (167)
.|.|+|.+... .++..++.+.||++||++|+..||+||+.|+|.+. +. .+ +|..+|..||+++|+.|++
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 36777776443 88999999999999999999999999999999886 11 23 5778999999999999998
Q ss_pred ec
Q 031040 139 LE 140 (167)
Q Consensus 139 v~ 140 (167)
..
T Consensus 81 ~D 82 (87)
T PF14560_consen 81 VD 82 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 38
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.21 E-value=1.9e-11 Score=107.86 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=66.4
Q ss_pred EEEEEeeCC-EEEEEEEcCCCCHHHHHHHHHhhhC--CCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVSTVS-KWHDISIKATSTFGELKMILSMVSG--LEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~g~-~~~~VeV~~t~TV~eLK~~Ia~~TG--Vppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+||+-+ ++++++|.|+.||.++|+.|+...| .|++.|+|||+||.|+|+.+|.+|+|++++.|++|.+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMls 74 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLS 74 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEe
Confidence 578999844 7889999999999999999999999 9999999999999999999999999999999988864
No 39
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=99.15 E-value=1.5e-11 Score=109.27 Aligned_cols=121 Identities=25% Similarity=0.299 Sum_probs=105.0
Q ss_pred ceeeEecCCceeEEeecCCCC------CCceEEEEEeeCCEEEEEEEcCCCCHH---HHHHHHHhhhCCCCCce--EEEE
Q 031040 46 EIKWELRPGGMLVQKRESGCE------GEGSITIRVSTVSKWHDISIKATSTFG---ELKMILSMVSGLEPREQ--RLLF 114 (167)
Q Consensus 46 ~~~we~rpggmlvq~r~~~~~------~~p~I~I~Vk~g~~~~~VeV~~t~TV~---eLK~~Ia~~TGVppe~Q--KLif 114 (167)
+++|+.|||||+||+|..... .+..++|.+.++...|.+.|.+..+++ ++++.+.+.+|+...+| +++|
T Consensus 31 ~~~~~~~Pg~~~~q~r~~p~~~~~~~~~p~~~~v~~~~~~~~~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~~k~~y 110 (344)
T KOG4361|consen 31 GVDAAPRPGGMPVQQRPQPQPPLSWPHFPFGIRVQIEYGQLGHGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQEVKLVY 110 (344)
T ss_pred CcccccCCCCCcCCcCCCCCCcccccccCCCccceeeecccccccccccccccccchhhhcccccccceeecccccccce
Confidence 779999999999999985421 144688889999888999999999999 99999999999999998 9999
Q ss_pred cCeecCC-cchhhhcCCCCCCEEEEecCCchhhhhhhccccCCcccccccccc
Q 031040 115 KGKERED-NEFLHMVGVRDKDKVLLLEDPAIKDMKLHGLRGGQPIGTAYRTIS 166 (167)
Q Consensus 115 kGK~LdD-~~tL~~~GIkdgskL~Lv~~p~~~~~k~~~~~~~~~~~~~~~~~~ 166 (167)
.+++++| ...|+.+|+++-+++.++.++.++..++...+....+.++..+++
T Consensus 111 ~~~e~rd~~l~l~~~g~p~~sk~~~~~~~~~q~~~~~~~~~~p~~~q~s~~v~ 163 (344)
T KOG4361|consen 111 VDKELRDQSLRLSSAGVPDASKINVVPDPGSQRARQLGALVAPAPTQTSKNVS 163 (344)
T ss_pred ecccccccccccccccCcccccceeccChhhcccccccccccccccccccccc
Confidence 9999765 568999999999999999999999999999988777666655543
No 40
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.7e-10 Score=105.57 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=69.8
Q ss_pred ceEEEEEeeCCEEEEEE-EcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 69 GSITIRVSTVSKWHDIS-IKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~Ve-V~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
+...|.|+|+++.|+++ ++.++|...||++|..+|||||++|||+++|+.+.|+-.+..++|+++.+||||.++
T Consensus 2 ~~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 2 PSDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred CcceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 56789999999999988 999999999999999999999999999999999999989999999999999999753
No 41
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.5e-09 Score=105.22 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=67.7
Q ss_pred EEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchh
Q 031040 72 TIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIK 145 (167)
Q Consensus 72 ~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~ 145 (167)
.|+||+ ..+++++.|..++||.+||.+|.+.++|+.+.|||||.|+.|.|++++.+|+| ||-+|||++.|-..
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 478888 44899999999999999999999999999999999999999999999999999 99999999975543
No 42
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.88 E-value=2.1e-08 Score=65.44 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=60.1
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.++...+.+.+..+|..+|.+|+...|+|+.+|.|.|.|+.|.|..+|.+|+|..+++++|...
T Consensus 8 ~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 8 DGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence 3467889999999999999999999999999999999999999999999999999999998764
No 43
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.86 E-value=9.3e-09 Score=79.31 Aligned_cols=69 Identities=22% Similarity=0.179 Sum_probs=62.4
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCC-------CCCCEEEEe
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGV-------RDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GI-------kdgskL~Lv 139 (167)
+++.|+..+.++-++..++.||.|||++|+..+..||++|+|+-.+..|+|+.||++||+ +.-++|-|.
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa 78 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLA 78 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEE
Confidence 688899888888999999999999999999999999999999955667999999999999 778887664
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.85 E-value=7.3e-09 Score=72.88 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=47.7
Q ss_pred cCCCCHHHHHHHHHhhhC-CCCCceEEE--EcCeecCCcchhhhcCCCCCCEEEE
Q 031040 87 KATSTFGELKMILSMVSG-LEPREQRLL--FKGKEREDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 87 ~~t~TV~eLK~~Ia~~TG-Vppe~QKLi--fkGK~LdD~~tL~~~GIkdgskL~L 138 (167)
++++||.+||+.|+...+ +++++|+|. ++|+.|.|+.+|.++||++|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 589999999999999876 589999995 8999999999999999999999876
No 45
>PLN02560 enoyl-CoA reductase
Probab=98.84 E-value=9.2e-09 Score=90.07 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=56.4
Q ss_pred EEEEEeeCCEE--EEEEEcCCCCHHHHHHHHHhhhCC-CCCceEEEEc---C----eecCCcchhhhcCCCCCCEEEEe
Q 031040 71 ITIRVSTVSKW--HDISIKATSTFGELKMILSMVSGL-EPREQRLLFK---G----KEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk~g~~~--~~VeV~~t~TV~eLK~~Ia~~TGV-ppe~QKLifk---G----K~LdD~~tL~~~GIkdgskL~Lv 139 (167)
|+|+.++|... .+|+|++++||+|||++|++..++ ++++|+|++. | +.|+|+.+|+++||+++++|++-
T Consensus 3 I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 3 VTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred EEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence 34443345443 379999999999999999999986 8999999983 4 37899999999999999998764
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.80 E-value=3.3e-08 Score=60.51 Aligned_cols=63 Identities=32% Similarity=0.430 Sum_probs=58.1
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++....+.++++.|+.+||+.|...+|++++.|+|+++|..+++...+..+++.+++.|+++.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 346778999999999999999999999999999999999999999888999999999999864
No 47
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.75 E-value=5.4e-08 Score=74.09 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=54.5
Q ss_pred EEEEEe--eCCEEEEEEEcCCCCHHHHHHHHHhh-------hCCCCCceEEEEcCeecCCcchhhhcCCCCCC------E
Q 031040 71 ITIRVS--TVSKWHDISIKATSTFGELKMILSMV-------SGLEPREQRLLFKGKEREDNEFLHMVGVRDKD------K 135 (167)
Q Consensus 71 I~I~Vk--~g~~~~~VeV~~t~TV~eLK~~Ia~~-------TGVppe~QKLifkGK~LdD~~tL~~~GIkdgs------k 135 (167)
|.|++. .|....++..++++||++||+.|... .-..+.+.||||.||.|+|+.+|.+|.+..++ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 444444 45458899999999999999999853 23456899999999999999999999999887 4
Q ss_pred EEEecCCchh
Q 031040 136 VLLLEDPAIK 145 (167)
Q Consensus 136 L~Lv~~p~~~ 145 (167)
+||+..|...
T Consensus 83 mHlvvrp~~~ 92 (111)
T PF13881_consen 83 MHLVVRPNAP 92 (111)
T ss_dssp EEEEE-SSSS
T ss_pred EEEEecCCCC
Confidence 6787654433
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.61 E-value=8.8e-08 Score=68.90 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=41.9
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc---Ceec--CCcchhhhcCCCCCCEEEEe
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK---GKER--EDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk---GK~L--dD~~tL~~~GIkdgskL~Lv 139 (167)
.|-|+|....-.+.|++++++|+++|+++|++.+++|+..|.|..+ ..++ .++.+|+++||+.||.|+|-
T Consensus 4 ~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 3556666544478899999999999999999999999999887432 1234 46789999999999999873
No 49
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.5e-07 Score=83.90 Aligned_cols=60 Identities=13% Similarity=0.316 Sum_probs=54.9
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
...+|+|+.+.+|.+||+.++.++|||+++.++||.||+|.|+.+++.+.+..-+.+|+|
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 345788999999999999999999999999999999999999999999988888888776
No 50
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=98.14 E-value=6.2e-06 Score=58.29 Aligned_cols=69 Identities=25% Similarity=0.285 Sum_probs=51.1
Q ss_pred eEEEEEeeCC-EEEEEEEcCCCCHHHHHHHHHhhhCCCCCc------eEEE-EcCeecCCcchhhhcCCCCCCEEEE
Q 031040 70 SITIRVSTVS-KWHDISIKATSTFGELKMILSMVSGLEPRE------QRLL-FKGKEREDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 70 ~I~I~Vk~g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~------QKLi-fkGK~LdD~~tL~~~GIkdgskL~L 138 (167)
.++|+|.++. ..+++.++.+.+|++|...|.+..+.+..+ .+|. -+|..|+++.+|+++||.||+.|+|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4678888865 899999999999999999999988875443 3444 5788999999999999999999987
No 51
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.69 E-value=0.00011 Score=55.61 Aligned_cols=69 Identities=26% Similarity=0.142 Sum_probs=58.2
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE-cC-eecCCcchhhhcC-------CCCCCEEEE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF-KG-KEREDNEFLHMVG-------VRDKDKVLL 138 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif-kG-K~LdD~~tL~~~G-------IkdgskL~L 138 (167)
.+.|+|+-...++-++..++.||-|||.+|+..+.-|+..|+|.. .- ..|+|..+|++|| .+...+|-|
T Consensus 2 ~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 2 DVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred ceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeee
Confidence 367889988778889999999999999999999999999999976 23 4689999999994 556666655
No 52
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.1e-05 Score=55.74 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=52.4
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEE
Q 031040 79 SKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 79 ~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~L 138 (167)
++...|...+++||+|||+.|+..||-.|+...|---+-.++|.-+|++|.|.+|--+.|
T Consensus 11 GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 11 GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 367788999999999999999999999999888764555678999999999999988765
No 53
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.61 E-value=0.00027 Score=49.30 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=48.0
Q ss_pred EeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEE
Q 031040 75 VSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 75 Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~L 138 (167)
|.++++.+.|.|.|+.|+.++-+.....+|+++++-.|.|++|.+|-+.++.-.|+..|++|.|
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 5567788999999999999999999999999999999999999999999999999999999975
No 54
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.59 E-value=0.00015 Score=54.12 Aligned_cols=61 Identities=25% Similarity=0.192 Sum_probs=47.4
Q ss_pred eEEEEEeeCCEEEEEEEc--CCCCHHHHHHHHHhhh--CCCCCceEEEEcCeecCCcchhhhcCC
Q 031040 70 SITIRVSTVSKWHDISIK--ATSTFGELKMILSMVS--GLEPREQRLLFKGKEREDNEFLHMVGV 130 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~--~t~TV~eLK~~Ia~~T--GVppe~QKLifkGK~LdD~~tL~~~GI 130 (167)
.|.|++..+---..++|+ .+.|+.+||++|-+.. ...-..+||||+|+.|.|...|...-.
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~ 66 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELK 66 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhc
Confidence 366777763333567777 8899999999999987 455577889999999999988877643
No 55
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.53 E-value=0.00043 Score=50.22 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=60.0
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc---Ce--ecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK---GK--EREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk---GK--~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|+- |.....+.|+|..+|..+|++|...-|++- +|+|-|. |+ .|.+..+|++|||=-+..|.|++.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 5789994 667788999999999999999999999986 9999983 22 357889999999998888888875
No 56
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0019 Score=48.75 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=66.4
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+..|+++|+. .+....+.|..++.+.-|...-++..|++....+++|+|+.+.+.+|=++++.+++|.|-++.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 4679999996 446667899999999999999999999999999999999999999999999999999997764
No 57
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0018 Score=54.99 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=57.5
Q ss_pred EEEEEeeCCEE--EEEEEcCCCCHHHHHHHHHhhhCCCCCceEE-EEcC-----eecC-CcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVSTVSKW--HDISIKATSTFGELKMILSMVSGLEPREQRL-LFKG-----KERE-DNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~g~~~--~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL-ifkG-----K~Ld-D~~tL~~~GIkdgskL~Lv~~ 141 (167)
++|.|.+.... .+...+++.|+.+||.+|+-++|.+++.+.| +|+| ..|+ ++..|..|++.||-.||++..
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 56666654323 4567899999999999999999999999999 5766 2454 567899999999999999864
No 58
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.76 E-value=0.012 Score=40.96 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=53.9
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCc-eEEE--EcCeecCCc--chhhhcCCCCCCEEEE
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPRE-QRLL--FKGKEREDN--EFLHMVGVRDKDKVLL 138 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~-QKLi--fkGK~LdD~--~tL~~~GIkdgskL~L 138 (167)
+.++|.|+. +|..+.-...+++|+.+|.+-|......+... -.|+ |--+.+.+. .+|.++|+.+.++|+|
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 445555554 33567888999999999999999988877765 6665 555677554 5999999999999986
No 59
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=96.71 E-value=0.0032 Score=44.78 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=49.6
Q ss_pred EcCCCCHHHHHHHHHhhhC-CCCCceEEEEcCeecCCcchhhhc-CCCCCCEEEEecCCc
Q 031040 86 IKATSTFGELKMILSMVSG-LEPREQRLLFKGKEREDNEFLHMV-GVRDKDKVLLLEDPA 143 (167)
Q Consensus 86 V~~t~TV~eLK~~Ia~~TG-Vppe~QKLifkGK~LdD~~tL~~~-GIkdgskL~Lv~~p~ 143 (167)
|+++++|.|+++.|..... ..-..-.|.++|+.|+|...|.++ |++++.+|.|+++|=
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCC
Confidence 5789999999999998644 555778889999999998888887 699999999998763
No 60
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=96.69 E-value=0.009 Score=41.42 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=41.5
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG 116 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG 116 (167)
++|++.+++..+.+.++++.|+.+|+.+|+..++++.+...|-|..
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 6788888889999999999999999999999999988888888873
No 61
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.66 E-value=0.011 Score=43.07 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=56.5
Q ss_pred EEEEEe-eCCEEEEEEEcCCCCHHHHHHHHHhhhCCC-----CCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 71 ITIRVS-TVSKWHDISIKATSTFGELKMILSMVSGLE-----PREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk-~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVp-----pe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
++|-++ |++.++++.++...++..|-..+.+...++ -.+.|+.-+++.|.+++.|.+|+|.+||.|.++
T Consensus 7 VTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~LeiL 81 (81)
T COG5417 7 VTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEIL 81 (81)
T ss_pred EEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEeC
Confidence 344444 377899999999999999999888765443 356788899999999999999999999999764
No 62
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.0015 Score=55.42 Aligned_cols=93 Identities=23% Similarity=0.340 Sum_probs=71.3
Q ss_pred ceeeEecCCceeEEeecCCC--------C--CCceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc
Q 031040 46 EIKWELRPGGMLVQKRESGC--------E--GEGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK 115 (167)
Q Consensus 46 ~~~we~rpggmlvq~r~~~~--------~--~~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk 115 (167)
.+---++|-+|+--+-+... . ..+..++++.+..+.+-+.+...+|++++|..|....|++|--|+++|+
T Consensus 113 p~ycls~p~n~~~E~~d~~s~ei~~ppp~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~S 192 (231)
T KOG0013|consen 113 PIYCLSRPPNAFAERKDSESLEIPEPPPSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFS 192 (231)
T ss_pred cceeeccCchHHHhhccccccccCCCCCCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeecc
Confidence 34455677776643333221 1 1233456666555677788999999999999999999999999999999
Q ss_pred CeecCCcchhhhcCCCCCCEEEE
Q 031040 116 GKEREDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 116 GK~LdD~~tL~~~GIkdgskL~L 138 (167)
|+.+-|...|+.|+|..|.+.+|
T Consensus 193 g~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 193 GGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred CCceeccccceeeeecCCCEEEE
Confidence 99999999999999999976655
No 63
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.13 E-value=0.056 Score=37.90 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=51.7
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCeecCC---cchhhhcCCCCCCEEEE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGKERED---NEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK~LdD---~~tL~~~GIkdgskL~L 138 (167)
.|+|++-.| ........+++|+.+|.+-|....+.+.....|+ |--+.+.+ +.+|.++|+-+..+|+|
T Consensus 6 ~I~iRlPdG-~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDG-SRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCC-CEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 455555555 5677889999999999999977667666667775 55566754 46899999998888875
No 64
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=95.97 E-value=0.039 Score=38.17 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=42.3
Q ss_pred eEEEEEeeCCEEEE-EEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC
Q 031040 70 SITIRVSTVSKWHD-ISIKATSTFGELKMILSMVSGLEPREQRLLFKG 116 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~-VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG 116 (167)
++.|++.+++..+. +.+.++.|+.+|+.+|+..++.++...+|.|..
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 47889999887777 999999999999999999999998999998864
No 65
>PRK06437 hypothetical protein; Provisional
Probab=95.93 E-value=0.058 Score=37.25 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=46.3
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|. |+....++++...|+.+|-+. .|++++.-.+..+|..+. .++-|++||+|.++.
T Consensus 5 ~~v~-g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 5 IRVK-GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred EEec-CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 4444 555667888999999998776 489999999999999987 455689999998873
No 66
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.74 E-value=0.11 Score=36.03 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=46.2
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCeecC---CcchhhhcCCCCCCEEEE
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGKERE---DNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK~Ld---D~~tL~~~GIkdgskL~L 138 (167)
|+|++-.| ..+.....+++|+.+|.+-|.....- +....|+ |--+.+. ++.+|.++|+.+ +.+++
T Consensus 5 i~iRlpdG-~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 5 IQIRLPDG-KRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEcCCC-CEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 44444455 56778899999999999999876443 5556665 4456664 478999999994 55544
No 67
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.69 E-value=0.052 Score=39.57 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=39.6
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCe
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGK 117 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK 117 (167)
.|+|++++ ++.|.|++..++.+|.++|.++.++|+++-+|-|+-.
T Consensus 4 vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 4 VVKVHFKY---TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 45666664 7899999999999999999999999999999999764
No 68
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=95.40 E-value=0.071 Score=38.51 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=38.1
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCC-CceEEEEc
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEP-REQRLLFK 115 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp-e~QKLifk 115 (167)
|+|++.+++..+.+.++++.++.+|++.|+..+++.. ....|-|.
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 5788889999999999999999999999999999875 44555553
No 69
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.35 E-value=0.15 Score=36.25 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=47.8
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCC-CCceEEE--EcCeecCC-cchhhhcCCCCCCEE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLE-PREQRLL--FKGKERED-NEFLHMVGVRDKDKV 136 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVp-pe~QKLi--fkGK~LdD-~~tL~~~GIkdgskL 136 (167)
.|+|++.+| +......+.++||.+|.+-|....+-+ .....|+ |=.|.+.| +.||.++|+.+...+
T Consensus 6 ~iqiRlpdG-~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 6 SIQIRLADG-KRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred EEEEECCCC-CEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 455555555 566788999999999999999876432 3556665 66777754 689999999865444
No 70
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.15 E-value=0.22 Score=34.43 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=45.2
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+|+|++-.......+++++..|+.+|-+.| +++++.-.+..+|..... +.-+++||.|-++.
T Consensus 4 mm~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 4 MIRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred EEEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 455555322234578888999999998876 788877777889988753 44589999998874
No 71
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.97 E-value=0.068 Score=46.82 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=45.9
Q ss_pred EEEEcCCCCHHHHHHHHHh-hhCCCCCceEEEE----cCeecCCcchhhhcCCCCCCEEEEe
Q 031040 83 DISIKATSTFGELKMILSM-VSGLEPREQRLLF----KGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~-~TGVppe~QKLif----kGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
..+++...|++|+++.+.. ...+.|..|++.+ +||.+.|+++|++||+..+++|.+-
T Consensus 16 ~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 16 EKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred eecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 4677889999999966654 5677775555543 7999999999999999999998763
No 72
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=94.92 E-value=0.09 Score=36.06 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=38.7
Q ss_pred EEEEEeeCCEEEEEEEc-CCCCHHHHHHHHHhhhCCCCCceEEEEcC
Q 031040 71 ITIRVSTVSKWHDISIK-ATSTFGELKMILSMVSGLEPREQRLLFKG 116 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~-~t~TV~eLK~~Ia~~TGVppe~QKLifkG 116 (167)
++|++.+++..+.+.++ .+.|+.+|+++|.+.++++.....|-|..
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 46788887778889998 99999999999999999987666666654
No 73
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.55 E-value=0.39 Score=33.87 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=49.8
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCeecCC---cchhhhcCCCCCCEEEE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGKERED---NEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK~LdD---~~tL~~~GIkdgskL~L 138 (167)
.|.|++-.| .......++++|+.+|.+-|....+-+ ....|+ |--|.+.+ +.+|.++|+.+...|+|
T Consensus 6 ~i~iRlp~G-~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDG-TTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCC-CEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 355555455 567778899999999999998765433 445665 56677753 47999999999999876
No 74
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.34 E-value=0.54 Score=33.99 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=50.5
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC--eecC--------CcchhhhcCCCCCCEEEE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG--KERE--------DNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG--K~Ld--------D~~tL~~~GIkdgskL~L 138 (167)
.|.|++-.| ....-....++|+.+|..-|.. .+..|+...|+++= |.+. .+.||.++|+.+...|++
T Consensus 6 ~I~iRlp~G-~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 6 KIVFKLPNG-TRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred EEEEECCCC-CEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 345555555 5667788899999999999965 45577889988755 6664 357999999998877764
No 75
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.16 E-value=0.61 Score=33.33 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=52.6
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCeecC---CcchhhhcCCCCCCEEEE
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGKERE---DNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK~Ld---D~~tL~~~GIkdgskL~L 138 (167)
+.++|.++. +|....-....++++.+|-.-|... |.+++..+|+ |==|.+. .+.+|.++|+.+..+|+|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 455556654 3356677899999999999999874 8888888886 4445553 356999999999998876
No 76
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.04 E-value=0.28 Score=33.49 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=43.3
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCC----CCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGL----EPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGV----ppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|.....++++...|+.+|.+.|....+- ....-.+..+|+... .+.-|++||.|.++-
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p 75 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP 75 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence 3345677888889999999999987542 344566777888876 345699999998873
No 77
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.01 E-value=0.3 Score=39.84 Aligned_cols=64 Identities=22% Similarity=0.143 Sum_probs=46.5
Q ss_pred EEEEEee-CC----EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceE-EEE-cCeec--CCcchhhhcCCCCCC
Q 031040 71 ITIRVST-VS----KWHDISIKATSTFGELKMILSMVSGLEPREQR-LLF-KGKER--EDNEFLHMVGVRDKD 134 (167)
Q Consensus 71 I~I~Vk~-g~----~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QK-Lif-kGK~L--dD~~tL~~~GIkdgs 134 (167)
|+|.|++ .+ .+..+.+++++||.+|+..|...+++++..|- |.+ .++.+ .++..+..+--.+.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 4566765 33 57889999999999999999999999999863 444 35555 455666666544443
No 78
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.95 E-value=0.76 Score=33.42 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=53.0
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCeec---CCcchhhhcCCCCCCEEEEe
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGKER---EDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK~L---dD~~tL~~~GIkdgskL~Lv 139 (167)
|.-+|.|+. +|+...-....++++.+|-.-+.. .|.+++...|+ |==|.+ +.+.||.++|+.+..+|+|=
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 444555553 336677888899999999999998 57888999987 333444 44579999999999999863
No 79
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.22 Score=37.60 Aligned_cols=71 Identities=24% Similarity=0.266 Sum_probs=62.3
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
..|.++|.. ++......|--+.|+.-|-...+...|-.-...|++|.|+-++-++|=.+++..+++.|..+
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav 94 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAV 94 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHH
Confidence 467888884 55677788999999999999999999999999999999999999999999999999877543
No 80
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=93.77 E-value=0.46 Score=34.63 Aligned_cols=60 Identities=10% Similarity=0.249 Sum_probs=45.1
Q ss_pred EEEEEeeCCEEEEEEEcC--CCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhh
Q 031040 71 ITIRVSTVSKWHDISIKA--TSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKD 146 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~--t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~ 146 (167)
|+|++.+++.+..+.+++ +.|+.+|++.|+..++++ -|.=|-+|| |++-|.|.-+...+|
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~------~f~lKYlDd----------e~e~v~lssd~eLeE 62 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN------DIQIKYVDE----------ENEEVSVNSQGEYEE 62 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC------cceeEEEcC----------CCCEEEEEchhhHHH
Confidence 578889999999999999 679999999999999999 233445555 346666655444443
No 81
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=93.45 E-value=0.41 Score=44.21 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=57.2
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCC------CCceEE-EEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLE------PREQRL-LFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVp------pe~QKL-ifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+|+|-.+.+..++-++.+..+.||--.|-...+-. +..-.| .-.|.+|+.+.+|++.||.||+.|+|..
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 478888877788999999999999999998887642 222333 2478899999999999999999999975
No 82
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=93.14 E-value=0.44 Score=35.53 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=40.4
Q ss_pred CceeEEeecCCCCCCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 54 GGMLVQKRESGCEGEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 54 ggmlvq~r~~~~~~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
||=++.+...+ + +.| |++++.+.|+.+.|+.||+++|++.++++.. ..|-|
T Consensus 5 GG~i~pr~~dg-------~--l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 5 GGRILPRPPDG-------Q--LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred CCEEeCcCCCC-------C--EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 67777666543 1 456 6799999999999999999999999999976 55544
No 83
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=93.02 E-value=0.38 Score=47.12 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=44.1
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCee
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKE 118 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~ 118 (167)
.+.|+.......|.+.|+++.|+..|++.|+..||+|.+.|-|+|.|..
T Consensus 315 vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 315 VVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred eeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 3677777777899999999999999999999999999999999999764
No 84
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.044 Score=49.61 Aligned_cols=60 Identities=28% Similarity=0.294 Sum_probs=44.2
Q ss_pred eEEEEEeeCCEE---EEEEEcCCCCHHHHHHHHHhhhC--CCCCceEEEEcCeecCCcchhhhcC
Q 031040 70 SITIRVSTVSKW---HDISIKATSTFGELKMILSMVSG--LEPREQRLLFKGKEREDNEFLHMVG 129 (167)
Q Consensus 70 ~I~I~Vk~g~~~---~~VeV~~t~TV~eLK~~Ia~~TG--Vppe~QKLifkGK~LdD~~tL~~~G 129 (167)
.+++.+|...+. .+|+.+..-||++||..|+...- --+.+|||+|.||.|.|...|.+.=
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence 456666653333 34555667899999999998643 2347899999999999988887763
No 85
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.40 E-value=0.76 Score=32.04 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=37.7
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhh-CCCC--CceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 80 KWHDISIKATSTFGELKMILSMVS-GLEP--REQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~T-GVpp--e~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
....++++...|+.+|.+.|.... ++.. ..-.+..+|+...+ +.-|++||.|.++-
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVai~P 77 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-----SAALKDGDELAIIP 77 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 456788888999999999997654 1111 11135567776543 33589999998873
No 86
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=0.23 Score=45.15 Aligned_cols=68 Identities=22% Similarity=0.189 Sum_probs=51.5
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE---cCeec-----CCcchhhhcCCCCCCEEEEe
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF---KGKER-----EDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif---kGK~L-----dD~~tL~~~GIkdgskL~Lv 139 (167)
++-..+....-..-|+-+-||.||+..|..+-|+-+..+||+| .|+.- +-+..|+.|+|++||.+.+=
T Consensus 340 k~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 340 KALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eeeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3333333333445566788999999999999999999999987 55543 34568999999999998653
No 87
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=92.29 E-value=0.75 Score=33.89 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=37.0
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK 115 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk 115 (167)
.|+|+|.+.+....+.|+++.++.+|..+|.+.+++. +..+|-|+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 4778888877889999999999999999999999995 34444443
No 88
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=92.12 E-value=0.74 Score=33.90 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=37.1
Q ss_pred EEEEeeCCEEEEEEEcC-----CCCHHHHHHHHHhhhCCCC-CceEEEEcC
Q 031040 72 TIRVSTVSKWHDISIKA-----TSTFGELKMILSMVSGLEP-REQRLLFKG 116 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~-----t~TV~eLK~~Ia~~TGVpp-e~QKLifkG 116 (167)
.|+|++++..+-+.++. +.++.+|+++|++.+.+++ ..-.|-|..
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 58889988888888874 7999999999999999998 555556654
No 89
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=91.31 E-value=0.39 Score=43.80 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=55.5
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCc--chhhhcCCCCCCEEEE
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDN--EFLHMVGVRDKDKVLL 138 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~--~tL~~~GIkdgskL~L 138 (167)
......++|..+-...+|+..++..+|++.+.--|+|++.++.+. ..|.+||++++|.|.+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l 73 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL 73 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence 447778999999999999999999999999999999999999765 6799999999999976
No 90
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=91.13 E-value=1.1 Score=33.12 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=41.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE----cCee-cCC-cchhhhcCCCCCCEEEE
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLF----KGKE-RED-NEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif----kGK~-LdD-~~tL~~~GIkdgskL~L 138 (167)
..+....+..+||+.+.+.+..++.| +++-||-- ++-+ |.+ ..||+++||.+|..|+|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 46778899999999999999999999 77788853 2223 544 46999999999997754
No 91
>PRK01777 hypothetical protein; Validated
Probab=90.96 E-value=2.8 Score=31.09 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=45.1
Q ss_pred ceEEEEEeeC--C--EEEEEEEcCCCCHHHHHHHHHhhhCCCCC-------ceEEEEcCeecCCcchhhhcCCCCCCEEE
Q 031040 69 GSITIRVSTV--S--KWHDISIKATSTFGELKMILSMVSGLEPR-------EQRLLFKGKEREDNEFLHMVGVRDKDKVL 137 (167)
Q Consensus 69 p~I~I~Vk~g--~--~~~~VeV~~t~TV~eLK~~Ia~~TGVppe-------~QKLifkGK~LdD~~tL~~~GIkdgskL~ 137 (167)
..|+|.|.|. . ....+++++.+||.|+-+.+ |++.+ .-.+.-+|+...-++ -+++||.|-
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~-----~L~dGDRVe 72 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTD-----VLRDGDRVE 72 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCC-----cCCCCCEEE
Confidence 3678888872 2 44568899999999987774 65555 236677888765433 589999998
Q ss_pred Eec
Q 031040 138 LLE 140 (167)
Q Consensus 138 Lv~ 140 (167)
+..
T Consensus 73 Iyr 75 (95)
T PRK01777 73 IYR 75 (95)
T ss_pred Eec
Confidence 874
No 92
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=90.71 E-value=1.3 Score=29.69 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=40.7
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.++++...|+.+|.+.+ +++++.-.+.++|+.+..+ .-+..-|++||.|.++.
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 46677888999998885 5788888888999877543 33344599999998873
No 93
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.56 E-value=0.9 Score=31.11 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=37.8
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+++....|..+||.++.... -.++|+|-+.+++. -+++||.|+++.
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~-----~L~e~D~v~~Ik 55 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPDA------DIVILNGFPTKEDI-----ELKEGDEVFLIK 55 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCcc-----ccCCCCEEEEEe
Confidence 578889999999999966532 37899998877654 478999999985
No 94
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=90.13 E-value=2.1 Score=29.71 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=41.2
Q ss_pred CCEEEEEEEcCC-CCHHHHHHHHHhhhC-CC--CCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 78 VSKWHDISIKAT-STFGELKMILSMVSG-LE--PREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 78 g~~~~~VeV~~t-~TV~eLK~~Ia~~TG-Vp--pe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+.....++++.. .|+.+|.+.|.+... +. .....+..+++...+ +.-|++||.|.++-
T Consensus 14 g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 14 GTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred CCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 334456888876 899999999988763 11 123456678877664 45799999998873
No 95
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=90.12 E-value=2.1 Score=28.70 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=40.4
Q ss_pred EeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 75 VSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 75 Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+.-+++.+.+ + ..|+.+|.+.+ +++++...+-+++..+. ....++.-+++||.|.++.
T Consensus 3 i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 3 LFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 3334555555 3 45899988775 67776666778998776 3445566799999998874
No 96
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=89.97 E-value=0.84 Score=33.17 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=36.5
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG 116 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG 116 (167)
+|++++ ++.+.+.+..+..+|..+|+++..++|+.-+|-|+-
T Consensus 2 ~Vh~~f---TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 2 TVQCAF---TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEE---EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 455553 477899999999999999999999999999999965
No 97
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=89.15 E-value=0.12 Score=46.12 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=0.0
Q ss_pred CceEEEEEeeCC-EEEEEEE--c-C--CCCHHHHHHHHHh----------hhCCCCCceE-----EEEcCeecCCcchhh
Q 031040 68 EGSITIRVSTVS-KWHDISI--K-A--TSTFGELKMILSM----------VSGLEPREQR-----LLFKGKEREDNEFLH 126 (167)
Q Consensus 68 ~p~I~I~Vk~g~-~~~~VeV--~-~--t~TV~eLK~~Ia~----------~TGVppe~QK-----LifkGK~LdD~~tL~ 126 (167)
...|.|++|... -..++.+ . | +.||.|||..+++ .+++|.+..+ |+|+-|++.|..+|.
T Consensus 76 ~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~ 155 (309)
T PF12754_consen 76 SKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLA 155 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHH
Confidence 345677766532 1222222 2 3 6899999999999 9999999999 999999998888877
Q ss_pred hcC
Q 031040 127 MVG 129 (167)
Q Consensus 127 ~~G 129 (167)
+..
T Consensus 156 e~l 158 (309)
T PF12754_consen 156 EVL 158 (309)
T ss_dssp ---
T ss_pred HHH
Confidence 664
No 98
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=88.20 E-value=4.3 Score=28.41 Aligned_cols=61 Identities=15% Similarity=0.301 Sum_probs=45.7
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+++..+++ .++++...|+.||-+. .|++++.--+.++|.....+.. ++.-+++||.|.++.
T Consensus 3 m~i~~ng~--~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~~-~~~~l~~gD~ievv~ 63 (68)
T COG2104 3 MTIQLNGK--EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQW-ADTILKEGDRIEVVR 63 (68)
T ss_pred EEEEECCE--EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccchhh-hhccccCCCEEEEEE
Confidence 34444444 5677777999999887 7999999999999988865433 445589999998764
No 99
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=88.16 E-value=4.1 Score=28.52 Aligned_cols=59 Identities=22% Similarity=0.181 Sum_probs=40.1
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhC-----CCC------CceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSG-----LEP------REQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TG-----Vpp------e~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+.....++++ ..|+.+|.+.|.+... +-. ....+..+|...+++.. .-|++||.|.++-
T Consensus 14 g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 14 GKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred CCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 3344567776 8899999999987753 111 23456678877654432 5689999998873
No 100
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=87.63 E-value=1.8 Score=31.82 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=37.8
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
+.+|++++.+..+.++.+-|...|+++|+.++.+|+...-|.|
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 5788998878888899999999999999999999998766666
No 101
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=87.53 E-value=5.8 Score=28.72 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=45.9
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+.+++.-+++ ..++++..|+.+|-+. .++++..--+-++|..+. .+..+..-+++||.|.++.
T Consensus 16 ~~~m~I~VNG~--~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 16 MVLITISINDQ--SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred CceEEEEECCe--EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEE
Confidence 33444554454 4566778898888776 478887778889998774 4556777799999998874
No 102
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=87.46 E-value=3.4 Score=27.67 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=39.6
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.++++...|+.+|.+.+ +++++.-.+.++|..+..+ .-..+-|++||.|.++.
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVT 59 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 46677788999998874 6778888888899877432 33445699999998863
No 103
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=87.14 E-value=3.2 Score=27.67 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=39.7
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.++++...|+.+|-+. .+++++.--+.++|..+.-.. -.+.-+++||.|.++.
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVH 61 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEE
Confidence 4577778899888765 588999888999997775332 3334489999998863
No 104
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=86.26 E-value=5.5 Score=28.87 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=46.3
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++|....++...-|-+. |..||+.+..+.++++...-+|. -.|-+++|++++..+ .++..++++.
T Consensus 5 ~kV~~~~r~~k~GV~A~-sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL--p~nT~l~~l~ 71 (78)
T cd01615 5 FKVCDSDRSRKKGVAAS-SLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL--PDNTVLMLLE 71 (78)
T ss_pred EEEecCCCCeeEEEEcC-CHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC--CCCcEEEEEC
Confidence 34444444444555444 89999999999999976666654 389999999998875 4666666664
No 105
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=86.20 E-value=5.6 Score=28.61 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=45.6
Q ss_pred EEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE--cCeecCCcchhhhcCCCCCCEEEEec
Q 031040 74 RVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF--KGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 74 ~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif--kGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+|....++...-|-+ .|..||+.+..+.++++...-+|.. .|-+++|++++..+ .++..++++.
T Consensus 4 kV~~~~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tL--p~nt~l~~L~ 69 (74)
T smart00266 4 KVRDHDRNVRKGVAA-SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTL--PDNTELMALE 69 (74)
T ss_pred EEecCCCCeeEEEEc-CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcC--CCCcEEEEEc
Confidence 444433333444444 4899999999999999977666643 89999999998875 4666666664
No 106
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=85.54 E-value=4.1 Score=27.56 Aligned_cols=52 Identities=10% Similarity=0.168 Sum_probs=38.5
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
..++++..|+.+|-+. .+++++.--+.+++..+...+. +.+ +++||+|.++.
T Consensus 9 ~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 9 QVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVT 60 (65)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEe
Confidence 3455677888887665 5889999999999996543322 235 99999998864
No 107
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=84.89 E-value=3.4 Score=27.74 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhCC--CCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 81 WHDISIKATSTFGELKMILSMVSGL--EPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TGV--ppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
...+.+....|+.+|.+.|.....- ..+.-.+..+|+...+ . -.+.-|++||.|.++-
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~-~-~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD-D-GLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG-G-TTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC-c-cCCcCcCCCCEEEEEC
Confidence 4578889999999999999876521 3366777889988887 3 5556689999998873
No 108
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=84.78 E-value=3.6 Score=29.80 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=42.7
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE--cCeecCCcchhhhcCCCCCCEEEEec
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLF--KGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif--kGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
..+-|-. .|..||+.+..+.++++.+.-+|.. .|-+.+|++++..+ .++..++++.
T Consensus 14 ~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL--p~nT~lm~L~ 71 (78)
T PF02017_consen 14 VKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL--PDNTVLMLLE 71 (78)
T ss_dssp CEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS--SSSEEEEEEE
T ss_pred ceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC--CCCCEEEEEC
Confidence 4444444 5999999999999999987777765 88899999888765 4666776665
No 109
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=83.80 E-value=3.7 Score=30.14 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=45.3
Q ss_pred EEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC---ceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhhhhh
Q 031040 74 RVST-VSKWHDISIKATSTFGELKMILSMVSGLEPR---EQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKDMKL 149 (167)
Q Consensus 74 ~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe---~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~~k~ 149 (167)
+++. .+..|.+.+.|+..+.+|++.|+.+.|+... .-.|.| ++| +|+.|.|.-+....|--.
T Consensus 4 K~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y----lDD----------EgD~VllT~D~DL~e~v~ 69 (86)
T cd06409 4 KFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY----VDD----------EGDIVLITSDSDLVAAVL 69 (86)
T ss_pred EeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE----EcC----------CCCEEEEeccchHHHHHH
Confidence 3443 4589999999999999999999999999975 444444 333 567777776655555443
Q ss_pred h
Q 031040 150 H 150 (167)
Q Consensus 150 ~ 150 (167)
+
T Consensus 70 i 70 (86)
T cd06409 70 V 70 (86)
T ss_pred H
Confidence 3
No 110
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=83.72 E-value=6.2 Score=26.10 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=35.7
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+++++..|+.+|.+.+ +++ ..-.+.++|.....+. -.+.-+++||.|.++.
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 9 TLSLPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred EEECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 46677888999998876 343 3356778888765332 2233499999998873
No 111
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=83.53 E-value=7.8 Score=28.18 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=45.9
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE--EEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRL--LFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL--ifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++|....++...-|-+ .|..||+.+..+.+.++...-+| --.|-+++|++++..+ .++..++++.
T Consensus 5 fkV~~~~r~~k~GV~A-~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~L--pdnT~lm~L~ 71 (78)
T cd06539 5 FRVSNHDRSSRRGVMA-SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL--GDNTHFMVLE 71 (78)
T ss_pred EEEecCCCCceEEEEe-cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhC--CCCCEEEEEC
Confidence 3444433333333433 48999999999999998665555 4589999999998875 4777777775
No 112
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=83.10 E-value=5.6 Score=28.66 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=41.2
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE-cCeecCCcchhhhcCCCCCCEEEEec
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLF-KGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif-kGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
....+.++..+||+++-+. .|||..+-.+++ +|+..+-+ |-+++||.|.+.-
T Consensus 23 ~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 3556788999999988766 899999998875 78766543 6689999998754
No 113
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=82.60 E-value=2.3 Score=39.05 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=49.7
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCC-CceEEE--EcCeecC-CcchhhhcCCCCCCEEE
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEP-REQRLL--FKGKERE-DNEFLHMVGVRDKDKVL 137 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp-e~QKLi--fkGK~Ld-D~~tL~~~GIkdgskL~ 137 (167)
.+|+|+..+|++ ....++-+.||.+++..|...-.--+ .-|.|+ |=-|+|. |+.||+++||.+...|.
T Consensus 306 TsIQIRLanG~R-lV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq 377 (380)
T KOG2086|consen 306 TSIQIRLANGTR-LVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ 377 (380)
T ss_pred ceEEEEecCCce-eeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence 358888888864 45778888999999999997644333 345554 4557775 56899999998766554
No 114
>PRK07440 hypothetical protein; Provisional
Probab=81.37 E-value=15 Score=25.40 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=43.7
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+++.-+++ .+++....|+.+|-+. .+++++.--+-++|..+.- ....+.-+++||+|.++.
T Consensus 5 m~i~vNG~--~~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 5 ITLQVNGE--TRTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred eEEEECCE--EEEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 33443444 4667788899988765 5788888888899987753 344556699999998863
No 115
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=80.74 E-value=2.3 Score=29.99 Aligned_cols=44 Identities=30% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 90 STFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 90 ~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
.|+.||.+.-++.+|++ ..-.+.-.|-+.+|=.. |.|||.|+++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~-----IRDgD~L~~~ 69 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDV-----IRDGDHLYLV 69 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEE-----EEcCCEEEEC
Confidence 69999999999999997 33334456666665443 7899999875
No 116
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=80.63 E-value=4.6 Score=29.71 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=34.2
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPR 108 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe 108 (167)
|+|++.+++..+...+++..|..+|.+++.+...++.+
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~ 38 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHND 38 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCC
Confidence 57888898889999999999999999999999998754
No 117
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=79.90 E-value=5.8 Score=29.04 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=37.8
Q ss_pred EEEEEEEc--CCCCHHHHHHHHHhhhCCCCCceEEEEc-Cee------c-C--Ccchh--hhcCCCCCCEEEEec
Q 031040 80 KWHDISIK--ATSTFGELKMILSMVSGLEPREQRLLFK-GKE------R-E--DNEFL--HMVGVRDKDKVLLLE 140 (167)
Q Consensus 80 ~~~~VeV~--~t~TV~eLK~~Ia~~TGVppe~QKLifk-GK~------L-d--D~~tL--~~~GIkdgskL~Lv~ 140 (167)
+.|.++++ ..+||.+|-+.|.+.. ++....|+.. |+. + + |...| .++-+++||.|.++-
T Consensus 17 ~~~~~~~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 17 KEHHVVLDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred eEEEEeccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 44555544 5789999999998776 4455555543 322 1 2 33445 356799999998874
No 118
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=79.65 E-value=10 Score=26.79 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=38.0
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCe
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGK 117 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK 117 (167)
.|..-+| +...|.|.|..|+.|+-+.+.+.-|+.|+.--|++.|.
T Consensus 3 ~V~LPng-~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 3 RVYLPNG-QRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred EEECcCC-CeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 3444444 66789999999999999999999999999999988764
No 119
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=79.36 E-value=11 Score=27.52 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=45.0
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCc--eEE--EEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPRE--QRL--LFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~--QKL--ifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++|....++...-|-+ .|..||+.+..+.+.++... -+| --.|-+++|++++..+ .++..++++.
T Consensus 5 fkV~~~~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL--p~nT~l~~L~ 73 (80)
T cd06536 5 CVVCNVSRQKQHGVAA-SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL--PPNTKFVLLA 73 (80)
T ss_pred eEEecCCCCeeEeEEc-CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC--CCCcEEEEEC
Confidence 3455433333444444 48999999999999999432 444 3488999999998875 4777777664
No 120
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=78.13 E-value=13 Score=27.30 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=44.3
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE--EEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRL--LFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL--ifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++|....++...-|-+ .|..||+.+..+...++.. -+| --.|-+++|++++..+ .|+..++++.
T Consensus 5 fkv~~~~r~~kkGV~A-~sL~EL~~K~~~~L~~~~~-~~lvLeeDGT~Vd~EeyF~tL--pdnT~lm~L~ 70 (81)
T cd06537 5 FRVCDHKRTVRKGLTA-ASLQELLAKALETLLLSGV-LTLVLEEDGTAVDSEDFFELL--EDDTCLMVLE 70 (81)
T ss_pred eEEecCCCCeeEeEEc-cCHHHHHHHHHHHhCCCCc-eEEEEecCCCEEccHHHHhhC--CCCCEEEEEC
Confidence 3444433333344433 4899999999999999733 444 3488899999998875 5777777775
No 121
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=76.31 E-value=16 Score=26.54 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=43.1
Q ss_pred EEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC-ceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 74 RVSTVSKWHDISIKATSTFGELKMILSMVSGLEPR-EQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 74 ~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe-~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+|....++...-|-+ .|..||+.+..+.++++.. ...|--.|-+++|++++..+ .++..+++++
T Consensus 6 kV~~~~rs~k~GV~A-~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tL--p~nt~l~vL~ 70 (79)
T cd06538 6 RVSNADRSLRKGIMA-DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQAL--ADNTVFMVLG 70 (79)
T ss_pred EEecCCCceeEeEEc-CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhC--CCCcEEEEEC
Confidence 444433333444444 4899999999999999632 23334588999999998875 4666666664
No 122
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=76.17 E-value=3.8 Score=31.95 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=36.1
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhc
Q 031040 81 WHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMV 128 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~ 128 (167)
.+-+-|+.+.||++|...|....+++|++--|+.++..+..+.++.++
T Consensus 42 ~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 42 VHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 333469999999999999999999999985444566555555666554
No 123
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=75.85 E-value=18 Score=29.95 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=35.7
Q ss_pred eEEEEEeeCC----EEEEEEEcCCCCHHHHHHHHHhhhCCCCC-ceEE----EEcCee---cCCcchhhhcCCCCCCEE
Q 031040 70 SITIRVSTVS----KWHDISIKATSTFGELKMILSMVSGLEPR-EQRL----LFKGKE---REDNEFLHMVGVRDKDKV 136 (167)
Q Consensus 70 ~I~I~Vk~g~----~~~~VeV~~t~TV~eLK~~Ia~~TGVppe-~QKL----ifkGK~---LdD~~tL~~~GIkdgskL 136 (167)
+|+|.....+ +.+.+-|+.+.||.||.+.|+...+++.+ .++| ++++|. +..+..|..+ .+...+
T Consensus 20 ~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~ 96 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITL 96 (213)
T ss_dssp -EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEE
T ss_pred EEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCccee
Confidence 4555555322 45788999999999999999999999776 3454 357764 5677788777 455543
No 124
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=75.73 E-value=9.7 Score=28.32 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 81 WHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
.....++-...+..||.+|+.+.+++-+.-.+....-.|+++.+|-+-+|+-.-+|.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 34566777899999999999999999999999889988999999999999988888774
No 125
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=74.55 E-value=22 Score=24.72 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=31.3
Q ss_pred EEEcC-CCCHHHHHHHHHhhhC-----CCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 84 ISIKA-TSTFGELKMILSMVSG-----LEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 84 VeV~~-t~TV~eLK~~Ia~~TG-----Vppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
+++++ ..||.+|++.|.+... +.....++..++..-.+ +.-|+|||.|-++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEe
Confidence 45543 4799999999988752 11222233445533222 2359999999876
No 126
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=74.09 E-value=9.2 Score=36.04 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=50.1
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhh--hCCCCCceEEEE----cCee--cCCcchhhhcCCCCCCEEEEec-CC
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMV--SGLEPREQRLLF----KGKE--REDNEFLHMVGVRDKDKVLLLE-DP 142 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~--TGVppe~QKLif----kGK~--LdD~~tL~~~GIkdgskL~Lv~-~p 142 (167)
+++-+.| .+.+++.++++++.|-.+|-.- -+..|++.-+.- .|-. +..+.|+.++|++.|+.|+|-- +-
T Consensus 4 rfRsk~G--~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ysd~ 81 (571)
T COG5100 4 RFRSKEG--QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYSDI 81 (571)
T ss_pred EEecCCC--ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEeccc
Confidence 3444444 5789999999999998888764 445566555542 2221 3456899999999999998842 33
Q ss_pred chhhh
Q 031040 143 AIKDM 147 (167)
Q Consensus 143 ~~~~~ 147 (167)
++.+.
T Consensus 82 ~snne 86 (571)
T COG5100 82 ASNNE 86 (571)
T ss_pred ccccc
Confidence 34433
No 127
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=73.72 E-value=18 Score=27.35 Aligned_cols=39 Identities=23% Similarity=0.080 Sum_probs=30.5
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCCC-Cc-eEEEEcC
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLEP-RE-QRLLFKG 116 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp-e~-QKLifkG 116 (167)
.+...++.++.++||.||-.+|+..+.+++ .. |-++..|
T Consensus 11 D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~ 51 (97)
T cd01775 11 DGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKH 51 (97)
T ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEEC
Confidence 335678999999999999999999999988 33 3334444
No 128
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=72.67 E-value=4.6 Score=34.22 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=50.0
Q ss_pred CceEEEEEee---CCEEE----EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC------eecCCcchhhhcCCCCCC
Q 031040 68 EGSITIRVST---VSKWH----DISIKATSTFGELKMILSMVSGLEPREQRLLFKG------KEREDNEFLHMVGVRDKD 134 (167)
Q Consensus 68 ~p~I~I~Vk~---g~~~~----~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG------K~LdD~~tL~~~GIkdgs 134 (167)
...|.|++|+ ..++. .+.|+.+++|.+|-..|.+..|+|++..-++|.- ..++...+|..+.+.+||
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~Gd 145 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGD 145 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTE
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCC
Confidence 3468899995 22222 3579999999999999999999999988888853 246788999999999999
Q ss_pred EEEEe
Q 031040 135 KVLLL 139 (167)
Q Consensus 135 kL~Lv 139 (167)
.|..=
T Consensus 146 Ii~fQ 150 (249)
T PF12436_consen 146 IICFQ 150 (249)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99653
No 129
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=72.43 E-value=26 Score=23.55 Aligned_cols=53 Identities=21% Similarity=0.107 Sum_probs=37.7
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.++++...|+.+|.+. .++++..-.+-.++..+.. ..-+..-+++||.|.++.
T Consensus 9 ~~~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 9 PMQCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EEEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEE
Confidence 4566778899998876 4666666777788887752 233444599999998874
No 130
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=71.47 E-value=21 Score=24.34 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=38.1
Q ss_pred EEEcCC-CCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 84 ISIKAT-STFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 84 VeV~~t-~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+++.. .|+.+|-+. .+++++.--+-++|..+.- +..+..-+++||.|.++.
T Consensus 10 ~~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 10 IEVPESVKTVAELLTH----LELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 455554 678887665 5788888888899987753 345556699999998863
No 131
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=71.47 E-value=15 Score=28.77 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=39.2
Q ss_pred EcC-CCCHHHHHHHHHhh----hCCCC------CceEEEEcC-----------------eec---CCcchhhhcCCCCCC
Q 031040 86 IKA-TSTFGELKMILSMV----SGLEP------REQRLLFKG-----------------KER---EDNEFLHMVGVRDKD 134 (167)
Q Consensus 86 V~~-t~TV~eLK~~Ia~~----TGVpp------e~QKLifkG-----------------K~L---dD~~tL~~~GIkdgs 134 (167)
|+. +.|+.||++.+.+. .|++| +..||+++. -.| +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 675 88999999887764 66655 445555422 244 567789999999988
Q ss_pred EEEEecC
Q 031040 135 KVLLLED 141 (167)
Q Consensus 135 kL~Lv~~ 141 (167)
-|-+---
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 8866543
No 132
>smart00455 RBD Raf-like Ras-binding domain.
Probab=71.30 E-value=16 Score=25.42 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=36.7
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG 116 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG 116 (167)
+.+-++ +...|.+.|..|+.|+-+.+-+.-|+.|+.-.|++.|
T Consensus 4 v~LP~~-~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 4 VHLPDN-QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EECCCC-CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 333344 6778999999999999999999999999999998855
No 133
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=71.28 E-value=13 Score=28.82 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=44.4
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC-ceEEEEc---C---eecCCcchhhhcCCC-CCCEEEE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPR-EQRLLFK---G---KEREDNEFLHMVGVR-DKDKVLL 138 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe-~QKLifk---G---K~LdD~~tL~~~GIk-dgskL~L 138 (167)
.++|.+.+| ....+.++++.|+.++-..|+...|++.. .--|.+- + ..++...+|.+...+ ....+++
T Consensus 5 ~~~V~l~dg-~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~f 80 (207)
T smart00295 5 VLKVYLLDG-TTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYF 80 (207)
T ss_pred EEEEEecCC-CEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEE
Confidence 455555555 56789999999999999999999999541 1222221 1 245556667766655 3345544
No 134
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.25 E-value=1.5 Score=41.48 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=66.3
Q ss_pred EEeecCCCCCCceEEEEEeeCC---EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCC
Q 031040 58 VQKRESGCEGEGSITIRVSTVS---KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKD 134 (167)
Q Consensus 58 vq~r~~~~~~~p~I~I~Vk~g~---~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgs 134 (167)
+-+|+-...+-.++.|+.-..+ +...+.-+-+.|-.||...|+..+||+-..-|.+.+||++.-..||.+-|++...
T Consensus 25 aarref~tTGlat~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq 104 (568)
T KOG2561|consen 25 AARREFRTTGLATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQ 104 (568)
T ss_pred hhhccccccCccceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhh
Confidence 4555544345567777776522 3334555667788999999999999999999999999999999999999999999
Q ss_pred EEEEecC
Q 031040 135 KVLLLED 141 (167)
Q Consensus 135 kL~Lv~~ 141 (167)
.++++..
T Consensus 105 ~~mv~~~ 111 (568)
T KOG2561|consen 105 ELMVAVG 111 (568)
T ss_pred HHHHHhc
Confidence 9887764
No 135
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=67.86 E-value=46 Score=26.74 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=42.7
Q ss_pred EEEEEeeCCEEEEEEEc-CCCCHHHHHHHHHh----hhCCCCCceEEEE-----cCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVSTVSKWHDISIK-ATSTFGELKMILSM----VSGLEPREQRLLF-----KGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~-~t~TV~eLK~~Ia~----~TGVppe~QKLif-----kGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|.+|..++.|-.. .+.||.+|-++--. ..+..++.+.-++ .|..|+.++.|.++ +.|.++|+.+-
T Consensus 1 mkvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV-~dd~d~liAvy 79 (145)
T PF12053_consen 1 MKVTVCFGRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDV-VDDRDQLIAVY 79 (145)
T ss_dssp -EEEEEETTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHH-S-TTEEEEEEE
T ss_pred CeEEEEeCCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEe-ccChhhhheee
Confidence 68999999988888876 57999999665543 3566666554433 56688877777777 66888887764
No 136
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=66.03 E-value=14 Score=24.92 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=37.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCC-CceEEEE----cC--eecCCcchhhhcCCC
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEP-REQRLLF----KG--KEREDNEFLHMVGVR 131 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVpp-e~QKLif----kG--K~LdD~~tL~~~GIk 131 (167)
...+++|++++|+.+|-++|+...|+.- +-.=|.| +| .-|+.+.+|......
T Consensus 7 ~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 7 TTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 6788999999999999999999999864 3345556 11 124556666666554
No 137
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=65.43 E-value=23 Score=24.19 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=33.5
Q ss_pred eEEEEEeeCC---EEEEEEEcCCCCHHHHHHHHHhhhCC--CCCceEEE
Q 031040 70 SITIRVSTVS---KWHDISIKATSTFGELKMILSMVSGL--EPREQRLL 113 (167)
Q Consensus 70 ~I~I~Vk~g~---~~~~VeV~~t~TV~eLK~~Ia~~TGV--ppe~QKLi 113 (167)
.|+|....+. ....|.|++++|..|+-+++...+++ .|.+-.|+
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 3455555443 27789999999999999999999999 55666663
No 138
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=64.86 E-value=28 Score=24.07 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=29.4
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHhhhCCC--CCceEEE
Q 031040 79 SKWHDISIKATSTFGELKMILSMVSGLE--PREQRLL 113 (167)
Q Consensus 79 ~~~~~VeV~~t~TV~eLK~~Ia~~TGVp--pe~QKLi 113 (167)
+....|.|++++|..++-+.+.+.++++ |+.-.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 4667899999999999999999999998 4555553
No 139
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=63.15 E-value=25 Score=33.74 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=47.5
Q ss_pred CceEEEEEee---CCEEEEEEEcCCCCHHHHHHHHHhh--hCC------CCCceEEEEc----Ce-ecCCc---------
Q 031040 68 EGSITIRVST---VSKWHDISIKATSTFGELKMILSMV--SGL------EPREQRLLFK----GK-EREDN--------- 122 (167)
Q Consensus 68 ~p~I~I~Vk~---g~~~~~VeV~~t~TV~eLK~~Ia~~--TGV------ppe~QKLifk----GK-~LdD~--------- 122 (167)
-.+++|.|.. +...+.|.|-.-+||.++|++|-+. .+. .+++.-|-+. |. .|.|.
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 3567777654 2255788999999999999999875 233 2344455331 22 34433
Q ss_pred ----chhhhcCCCCCCEEEEecC
Q 031040 123 ----EFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 123 ----~tL~~~GIkdgskL~Lv~~ 141 (167)
.||..|+|.||++|-|+..
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k 289 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPK 289 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES
T ss_pred ceEeccHhhcCCCCCceEEEeec
Confidence 2699999999999999864
No 140
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=61.35 E-value=38 Score=30.58 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=41.3
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.++++...|+.||-+. .+++++.--+.++|..+.- +...++-|++||+|.++.
T Consensus 9 ~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 9 PRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVH 61 (326)
T ss_pred EEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEE
Confidence 4666778898888766 5899999999999998853 344555699999998874
No 141
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=59.83 E-value=4.4 Score=30.66 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=22.6
Q ss_pred EEEEcCeecCCcchhhhc-CCCCCCEEEE
Q 031040 111 RLLFKGKEREDNEFLHMV-GVRDKDKVLL 138 (167)
Q Consensus 111 KLifkGK~LdD~~tL~~~-GIkdgskL~L 138 (167)
.|-|.||+|.++.+|.+| |-.+..+|++
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiiv 31 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIV 31 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEE
Confidence 478999999999999998 5566666665
No 142
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=59.60 E-value=48 Score=25.84 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=41.2
Q ss_pred ceEEEEEee-CC----EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec
Q 031040 69 GSITIRVST-VS----KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER 119 (167)
Q Consensus 69 p~I~I~Vk~-g~----~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L 119 (167)
..|.|+++. |. +.....|+++.||+-+--.|....++++.+|-.+|=..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 457777775 33 3445689999999999999999999999999999866554
No 143
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=58.54 E-value=47 Score=23.09 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=32.8
Q ss_pred EEEEEee--CCEEEEEEEcCCCCHHHHHHHHHhhhCCCC--CceEEE
Q 031040 71 ITIRVST--VSKWHDISIKATSTFGELKMILSMVSGLEP--REQRLL 113 (167)
Q Consensus 71 I~I~Vk~--g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp--e~QKLi 113 (167)
|+|.... +.....|.|++++|..++-+.+.+.++++. +.-.|+
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 4555543 235678999999999999999999999985 455554
No 144
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=57.85 E-value=9.7 Score=27.63 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=38.0
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCC-------CCceEEEEcCe-ecC------CcchhhhcCCCCCCEEEEe
Q 031040 84 ISIKATSTFGELKMILSMVSGLE-------PREQRLLFKGK-ERE------DNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVp-------pe~QKLifkGK-~Ld------D~~tL~~~GIkdgskL~Lv 139 (167)
|+|+++.|+.+|-+.|.+...+. .+.-.|++.+- .|+ =+.+|.++ +.+|+.|++.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 68999999999999999875443 34444444442 121 13578888 9999998774
No 145
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=57.55 E-value=61 Score=24.09 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=26.8
Q ss_pred ceEEEEEeeC--CEEEEEEEcCCCCHHHHHHHHHhh
Q 031040 69 GSITIRVSTV--SKWHDISIKATSTFGELKMILSMV 102 (167)
Q Consensus 69 p~I~I~Vk~g--~~~~~VeV~~t~TV~eLK~~Ia~~ 102 (167)
..+.|.+.+. ...+.+.+++++|+.+|.+.+-..
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k 51 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTK 51 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHH
Confidence 3566666653 488999999999999998877664
No 146
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=57.26 E-value=46 Score=24.51 Aligned_cols=66 Identities=11% Similarity=0.075 Sum_probs=46.2
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc-------CeecCCcch----hhhcCCCCCCEE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK-------GKEREDNEF----LHMVGVRDKDKV 136 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk-------GK~LdD~~t----L~~~GIkdgskL 136 (167)
.|+|+...| .+..|.|+++.|+.++=++|.....+.++.---+|- .+.++|.+. |+..++....++
T Consensus 4 vvkv~~~Dg-~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l 80 (85)
T cd01787 4 VVKVYSEDG-ASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVL 80 (85)
T ss_pred EEEEEecCC-CeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEE
Confidence 356666565 577899999999999999999999988766555542 344566654 445566344443
No 147
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=56.83 E-value=53 Score=22.68 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=35.8
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC--eecCCc
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG--KEREDN 122 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG--K~LdD~ 122 (167)
+.|.+-++ +...|.|.|..|+.|+-..+-+.-|+.|+.-.++..| +.++.+
T Consensus 3 ~~v~LP~~-q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNG-QRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTT-EEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCC-CEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 34455554 6778999999999999999999999999987776544 445433
No 148
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=54.77 E-value=26 Score=26.65 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=37.3
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEEE-cCeecCCcchhhh----cCCCCCCEEEE
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLLF-KGKEREDNEFLHM----VGVRDKDKVLL 138 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif-kGK~LdD~~tL~~----~GIkdgskL~L 138 (167)
.-|+.+.||++|...|.....+++++--.+| ++.....+.+|.+ ++-.|| .|+|
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DG-fLyl 103 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDG-FLYM 103 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCC-EEEE
Confidence 3499999999999999999999998855555 4433344555544 354444 4444
No 149
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=54.77 E-value=24 Score=26.52 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=30.8
Q ss_pred EEcCCCCHHHHHHHHHhhhCCCCCce-EEEEcCeecCCcchhhhc
Q 031040 85 SIKATSTFGELKMILSMVSGLEPREQ-RLLFKGKEREDNEFLHMV 128 (167)
Q Consensus 85 eV~~t~TV~eLK~~Ia~~TGVppe~Q-KLifkGK~LdD~~tL~~~ 128 (167)
=|+.+.||++|...|-....+++++= -|+.++.....+.+|+++
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 37899999999999999999998753 334466455566666554
No 150
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=53.46 E-value=29 Score=28.21 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=49.9
Q ss_pred CceEEEEEeeCCEEEEEEEcC-CCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCC-------CEEEE-
Q 031040 68 EGSITIRVSTVSKWHDISIKA-TSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDK-------DKVLL- 138 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~-t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdg-------skL~L- 138 (167)
...|.++|+.|- +-+++.. .+.+.++++...+.+-.+-+ +..|+-+....|+.+| +|-| |.-+|
T Consensus 65 g~~veL~V~vGr--i~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY-~KyG~~~~~~~D~~liG 137 (153)
T PF02505_consen 65 GEEVELTVKVGR--IILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY-AKYGEDFVPNADPRLIG 137 (153)
T ss_pred CEEEEEEEEEeE--EEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh-hhcCcccccCCChhHcc
Confidence 356889999883 5677777 88888998888887755544 3468889999999998 3333 33333
Q ss_pred ecCCchh
Q 031040 139 LEDPAIK 145 (167)
Q Consensus 139 v~~p~~~ 145 (167)
+.||-++
T Consensus 138 l~DP~sk 144 (153)
T PF02505_consen 138 LVDPKSK 144 (153)
T ss_pred ccCCcch
Confidence 4566654
No 151
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=53.13 E-value=32 Score=24.94 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=34.9
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE-EEcCeecC
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRL-LFKGKERE 120 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL-ifkGK~Ld 120 (167)
..+...|++++|=-|+|+.|+..+|+++..-+. .+.||..-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 468899999999999999999999999977665 57777554
No 152
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=52.55 E-value=6.4 Score=34.95 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=42.0
Q ss_pred eCCEEEEEEEc-CCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchh
Q 031040 77 TVSKWHDISIK-ATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFL 125 (167)
Q Consensus 77 ~g~~~~~VeV~-~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL 125 (167)
..++...+.+. -...+..||.++...+++++.-|++.|.|..|.|+..+
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 35577777777 67899999999999999999999999999999988433
No 153
>PRK09974 putative regulator PrlF; Provisional
Probab=50.28 E-value=20 Score=27.63 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.4
Q ss_pred CCcceeeEecCCceeEEeecCC
Q 031040 43 SSHEIKWELRPGGMLVQKRESG 64 (167)
Q Consensus 43 ~~~~~~we~rpggmlvq~r~~~ 64 (167)
...+++|+++|+|.++.++...
T Consensus 34 ~GdkI~f~i~~dG~V~i~~~~~ 55 (111)
T PRK09974 34 KRDSIHYEILPGGQVFICRLGD 55 (111)
T ss_pred CCCEEEEEEeCCCEEEEEECCC
Confidence 4589999999999998888643
No 154
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=49.83 E-value=18 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCc
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPRE 109 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~ 109 (167)
.-+.+.|.+..|+.++|++|+..+||+..+
T Consensus 133 iPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke 162 (213)
T PF14533_consen 133 IPFLFVVKPGETFSDTKERLQKRLGVSDKE 162 (213)
T ss_dssp EEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred CCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence 445567999999999999999999999754
No 155
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=48.54 E-value=54 Score=23.76 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=38.0
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCee-c-CCcchhhh---cCCCCCCEEEEe
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLLFKGKE-R-EDNEFLHM---VGVRDKDKVLLL 139 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~-L-dD~~tL~~---~GIkdgskL~Lv 139 (167)
.-|+++.||++|...|....++.+++--.+|=+.. + ..++++.+ += .++..|+|.
T Consensus 20 flv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~ 79 (87)
T cd01612 20 FKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVS 79 (87)
T ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEE
Confidence 45999999999999999999999887555665544 3 23344433 22 455666553
No 156
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=48.10 E-value=6.3 Score=34.72 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=36.2
Q ss_pred eCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC
Q 031040 77 TVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG 116 (167)
Q Consensus 77 ~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG 116 (167)
+.+..+.++++..++|.|.+..|+..++|.+.--++++.+
T Consensus 10 ~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~ 49 (278)
T KOG4842|consen 10 KSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALN 49 (278)
T ss_pred ecCcEEEEEeccccccCCCCcccceeeeeccchHHHHhhh
Confidence 4456788999999999999999999999999999999877
No 157
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=48.09 E-value=28 Score=25.13 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=30.5
Q ss_pred EEEc-CCCCHHHHHHHH-HhhhCCCCC----ceEEEEcCee----cCCcchhhhcCCCCCCEEEEe
Q 031040 84 ISIK-ATSTFGELKMIL-SMVSGLEPR----EQRLLFKGKE----REDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 84 VeV~-~t~TV~eLK~~I-a~~TGVppe----~QKLifkGK~----LdD~~tL~~~GIkdgskL~Lv 139 (167)
|.++ ..+|+++|-+.| ....|+... ...++|..-+ -..+.+|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 368999998865 446776553 3344554443 122468999999999998765
No 158
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=47.39 E-value=67 Score=26.16 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=50.0
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE-EcCeecCCc--------chhhhcCCCCCCEEEEecCCchhhhh
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLL-FKGKEREDN--------EFLHMVGVRDKDKVLLLEDPAIKDMK 148 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi-fkGK~LdD~--------~tL~~~GIkdgskL~Lv~~p~~~~~k 148 (167)
..|.+.|++.+|=-++|+.|+..+||.+..-+.+ ..|+...-. .--.-.-+.+|++|-+.......+.+
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g~~~G~~~~~KKAiVtL~~g~~I~~f~~~~~~~~~ 100 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRFPGFTNSYKKAYVTLAEGYSINLFPEESEKEQK 100 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccCCcccccCCcEEEEEECCCCCEeeccCCcchhcch
Confidence 4689999999999999999999999999887765 555443221 12223457889999887765544433
No 159
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=46.36 E-value=1.2e+02 Score=22.43 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=43.0
Q ss_pred eCCEEEEEEEcCCCCHHHHHHHHHhh-hC--CCC--C-ceEEEEcC--eecCCcchhhhcCCCCCCEEEEe
Q 031040 77 TVSKWHDISIKATSTFGELKMILSMV-SG--LEP--R-EQRLLFKG--KEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 77 ~g~~~~~VeV~~t~TV~eLK~~Ia~~-TG--Vpp--e-~QKLifkG--K~LdD~~tL~~~GIkdgskL~Lv 139 (167)
...-.+-|.|+..+|..++-++++.- -| ++| . ..++.++| ..+..+.++.+.||++-+.|-+.
T Consensus 12 gDFv~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~ 82 (85)
T PF06234_consen 12 GDFVLQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVR 82 (85)
T ss_dssp T-SBEEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEE
T ss_pred cceEEEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEE
Confidence 33467789999999999999998863 33 333 2 45666888 88999999999999999888654
No 160
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=45.98 E-value=36 Score=24.26 Aligned_cols=43 Identities=9% Similarity=0.174 Sum_probs=27.5
Q ss_pred EEeeCCEEEEEEEcC-CCCHHHHHHHHHhhhCC--CCCceEEEEcC
Q 031040 74 RVSTVSKWHDISIKA-TSTFGELKMILSMVSGL--EPREQRLLFKG 116 (167)
Q Consensus 74 ~Vk~g~~~~~VeV~~-t~TV~eLK~~Ia~~TGV--ppe~QKLifkG 116 (167)
+++.......|.++. ..+|.|||..|.+..++ ..+.+-.+|+.
T Consensus 4 KFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na 49 (74)
T PF08783_consen 4 KFKSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNA 49 (74)
T ss_dssp EETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEES
T ss_pred EecccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECC
Confidence 444444566788874 67999999999877665 33444445554
No 161
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=44.52 E-value=1.2e+02 Score=21.97 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=40.6
Q ss_pred EEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE--EEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 74 RVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRL--LFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 74 ~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL--ifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+|....++...-|-+ .|..||+.+..+.+.++...-+| --.|-++ +++++..+ .++..++++.
T Consensus 6 kV~~~~rs~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeV-tEeyF~tL--p~nT~lmvL~ 70 (77)
T cd06535 6 KIRSLNSAQKYGVAA-KNLKELLRKGCRLLQLPCAGSRLCLYEDGTEV-TEEYFPTL--PDNTELVLLT 70 (77)
T ss_pred EEecCCCCeeEeEEc-CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe-hHHHHhcC--CCCcEEEEEc
Confidence 344333333344443 48999999999999999664444 3477788 46666654 4666666664
No 162
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=44.25 E-value=33 Score=33.61 Aligned_cols=50 Identities=30% Similarity=0.484 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHhhhCCCCCceEEEE-cCeecCCcchhhhcCCCCCCEEEEecCCc
Q 031040 89 TSTFGELKMILSMVSGLEPREQRLLF-KGKEREDNEFLHMVGVRDKDKVLLLEDPA 143 (167)
Q Consensus 89 t~TV~eLK~~Ia~~TGVppe~QKLif-kGK~LdD~~tL~~~GIkdgskL~Lv~~p~ 143 (167)
..|..|||....++.|++++...+.= .|-+.+|-+- |.|++||+++++|.
T Consensus 770 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 820 (823)
T PLN03192 770 PPSLEELKAIAGEKLGFDARKAMVTNEEGAEIDSIEV-----IRDNDKLFVVEDED 820 (823)
T ss_pred CccHHHHHHHHHHHhCCCcccceeecCCCceeeeeEE-----EecCCEEEEeeccc
Confidence 56899999999999999998765432 3333333332 69999999998864
No 163
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=43.12 E-value=55 Score=23.90 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=37.1
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCee
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKE 118 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~ 118 (167)
|+|++.+.++...+++..---+.||.+++...+|-+ .-|.|-.++
T Consensus 1 vRiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afGq~---mdl~ytn~e 45 (79)
T cd06405 1 VRIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFGQP---MDLHYTNNE 45 (79)
T ss_pred CeEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe---eeEEEeccc
Confidence 467777888889999999999999999999999965 446676664
No 164
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=43.00 E-value=1.3e+02 Score=21.96 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=36.2
Q ss_pred EEEEEee--CC--EEEEEEEcCCCCHHHHHH---HHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST--VS--KWHDISIKATSTFGELKM---ILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~--g~--~~~~VeV~~t~TV~eLK~---~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|.|.| .. ....++|+..+|+.+--+ .++..-.+..+.+++=.=||....+ .-+++||.|.+-.
T Consensus 1 i~VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d-----~~L~~GDRVEIYR 72 (84)
T PF03658_consen 1 IRVEVAYALPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLD-----TVLRDGDRVEIYR 72 (84)
T ss_dssp EEEEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT------B--TT-EEEEE-
T ss_pred CEEEEEEECCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCC-----CcCCCCCEEEEec
Confidence 4666665 22 455789999999998766 3444556777888884445544422 3488999998764
No 165
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=42.47 E-value=51 Score=24.67 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=33.0
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE-EcCe
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLL-FKGK 117 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi-fkGK 117 (167)
..+.+.|++++|=.++|+.+++++|+.++.-..+ .+|+
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 5788999999999999999999999999887764 4554
No 166
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=42.34 E-value=62 Score=23.63 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=34.4
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE-EEcCeec
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRL-LFKGKER 119 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL-ifkGK~L 119 (167)
..+.+.|++.+|=.|+|+.|+..+|+++..-+- ...||..
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~k 61 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTK 61 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCcee
Confidence 578899999999999999999999999987765 4666654
No 167
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.22 E-value=65 Score=23.01 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=31.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
..|.+.|++.+|=.|+|+.|+..+++.+..-+.+.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~ 49 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLI 49 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEE
Confidence 47899999999999999999999999998877643
No 168
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=41.20 E-value=1.1e+02 Score=22.27 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=30.1
Q ss_pred EEEEeeCCEEEEEEEcC-CCCHHHHHHHHHhhhC--CCCCceEE
Q 031040 72 TIRVSTVSKWHDISIKA-TSTFGELKMILSMVSG--LEPREQRL 112 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~-t~TV~eLK~~Ia~~TG--Vppe~QKL 112 (167)
-|++.+|+....+.++. +.|+.+|..+++..+. +|+...-+
T Consensus 2 iiK~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~fl 45 (81)
T cd06401 2 ILKAQLGDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVL 45 (81)
T ss_pred eEEEEeCCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEE
Confidence 36667777777788876 4699999999998877 44444444
No 169
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=40.87 E-value=1.1e+02 Score=22.43 Aligned_cols=45 Identities=7% Similarity=0.225 Sum_probs=36.0
Q ss_pred EEEEEeeCCEEEEEEEcCC--CCHHHHHHHHHhhhCCCCCceEEEEc
Q 031040 71 ITIRVSTVSKWHDISIKAT--STFGELKMILSMVSGLEPREQRLLFK 115 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t--~TV~eLK~~Ia~~TGVppe~QKLifk 115 (167)
+.|+.|++.+.....++.+ .++.+|-+.|+....++.-+--|-|-
T Consensus 1 veVKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~ 47 (80)
T cd06403 1 VEVKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYT 47 (80)
T ss_pred CceecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEe
Confidence 3577788887777777765 89999999999999999866666564
No 170
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.77 E-value=68 Score=23.32 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=31.4
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
..+.+.|++.+|=.++|+.|+..+|+.+..-+.+-
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~ 56 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLI 56 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEE
Confidence 47899999999999999999999999998877643
No 171
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=39.34 E-value=98 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.370 Sum_probs=28.4
Q ss_pred EEEEEee--CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 71 ITIRVST--VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 71 I~I~Vk~--g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
++|.++. ..-+..|.|+.+.|+.+|=..|+..+|-.-...--++
T Consensus 7 lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~~~HL~~F~ 52 (179)
T PF07929_consen 7 LKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWDDDHLYEFF 52 (179)
T ss_dssp EEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT----S-EEEE
T ss_pred EEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcCCCEeEEEE
Confidence 3444443 2367889999999999999999999998766555444
No 172
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=39.13 E-value=1.2e+02 Score=21.83 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=43.8
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhh---hCCCCCceEEE-EcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 80 KWHDISIKATSTFGELKMILSMV---SGLEPREQRLL-FKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~---TGVppe~QKLi-fkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
+-..|+.++.+..--..++--+. .|-|++..-|- -.|..|+-+..+++||+.++-+|+|.-.
T Consensus 6 qPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 6 QPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 45567767666555554443333 45778877765 3677788889999999999999999653
No 173
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=38.66 E-value=1.5e+02 Score=21.44 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=37.0
Q ss_pred ceEEEEEeeC--CEEEEEEEcCCCCHHHHHHHHHhh--hCCCCC----ceEEEEcCee--cCCcchhhhc
Q 031040 69 GSITIRVSTV--SKWHDISIKATSTFGELKMILSMV--SGLEPR----EQRLLFKGKE--REDNEFLHMV 128 (167)
Q Consensus 69 p~I~I~Vk~g--~~~~~VeV~~t~TV~eLK~~Ia~~--TGVppe----~QKLifkGK~--LdD~~tL~~~ 128 (167)
..|.|.|.+. ...+.+.++.+.|+.+|-+++-.. .++.+. +-.|=-.|.. |..+..|.+|
T Consensus 15 ~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y 84 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQY 84 (106)
T ss_dssp SEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGB
T ss_pred CeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeecc
Confidence 4577777764 588999999999999998887765 333332 3444444542 3445555555
No 174
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=37.47 E-value=38 Score=25.73 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=24.4
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHH
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMIL 99 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~I 99 (167)
|+|++..+++.+.+++..+.|..+|.++|
T Consensus 1 mkI~i~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEEEEECCCHHHHHHHHhC
Confidence 57888888899999999999999888876
No 175
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=37.26 E-value=1.1e+02 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 88 ATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 88 ~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
++-+-.|+++.|+...++...+..++|
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~ 60 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLF 60 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEE
Confidence 577999999999999996555555554
No 176
>PF15484 DUF4642: Domain of unknown function (DUF4642)
Probab=37.14 E-value=17 Score=29.53 Aligned_cols=14 Identities=43% Similarity=0.885 Sum_probs=11.1
Q ss_pred EecCCceeEEeecCC
Q 031040 50 ELRPGGMLVQKRESG 64 (167)
Q Consensus 50 e~rpggmlvq~r~~~ 64 (167)
=||| |.|||||...
T Consensus 50 p~RP-GILVQR~~Ke 63 (156)
T PF15484_consen 50 PVRP-GILVQRQNKE 63 (156)
T ss_pred CcCC-ceEEEecCcc
Confidence 3788 5999999854
No 177
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.87 E-value=86 Score=27.98 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=52.3
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec------CCcchhhhcCCCCCCEEEE
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER------EDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L------dD~~tL~~~GIkdgskL~L 138 (167)
...|+|+.-.| ++....+++..|...++..|....+..+. --.|+.|-+. +...+|..+++-+.+.|.|
T Consensus 210 ~crlQiRl~DG-~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~-P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 210 QCRLQIRLPDG-QTLTQTFNARETLAAVRLWVDLNRGDGLD-PYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred ceEEEEEcCCC-CeeeeecCchhhHHHHHHHHHHhccCCCC-CeeeecCCCceecccccccccHHHhccccchheec
Confidence 45677777666 68889999999999999999999887763 2334555443 2236899999999888865
No 178
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=36.36 E-value=51 Score=24.41 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=34.7
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRL 112 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL 112 (167)
+.|.+.+| ....|+|..+++..++-+.+..+.|+|.+.+.-
T Consensus 4 L~V~Lpdg-~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 4 LRIALPDK-ATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEccCC-CEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 45555555 678899999999999999999999999988775
No 179
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=35.52 E-value=59 Score=27.54 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=32.6
Q ss_pred EEEEEee---CC-EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE
Q 031040 71 ITIRVST---VS-KWHDISIKATSTFGELKMILSMVSGLEPREQRLL 113 (167)
Q Consensus 71 I~I~Vk~---g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi 113 (167)
|.|+++. .. ..+++.++...|..+|-+.|++..+++|+..+|+
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 6666664 22 5789999999999999999999999999999986
No 180
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=35.05 E-value=26 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.3
Q ss_pred cchhhhcCCCCCCEEEEe
Q 031040 122 NEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 122 ~~tL~~~GIkdgskL~Lv 139 (167)
.+.|...|+++||+|.+-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 468999999999999763
No 181
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=34.81 E-value=31 Score=27.90 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=9.1
Q ss_pred CCcceeeEecC
Q 031040 43 SSHEIKWELRP 53 (167)
Q Consensus 43 ~~~~~~we~rp 53 (167)
...|+|||..|
T Consensus 110 ~l~e~e~eyqp 120 (150)
T PF04360_consen 110 FLTEMEQEYQP 120 (150)
T ss_pred ccccceeeccc
Confidence 44899999988
No 182
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=34.79 E-value=22 Score=24.56 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=11.6
Q ss_pred cchhhhcCCCCCCEEEE
Q 031040 122 NEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 122 ~~tL~~~GIkdgskL~L 138 (167)
.+.|...|+++||+|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 36788999999999975
No 183
>CHL00030 rpl23 ribosomal protein L23
Probab=34.67 E-value=83 Score=23.27 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=33.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE-EcCee
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLL-FKGKE 118 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi-fkGK~ 118 (167)
..+.+.|++++|=.|+|+.|+..+++.+..-+.+ ..||.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~ 59 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKK 59 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCc
Confidence 4789999999999999999999999999877654 45553
No 184
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.59 E-value=36 Score=34.50 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=43.5
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE----cCeec--CCcchhhhcCCCCCCEEEE
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLF----KGKER--EDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif----kGK~L--dD~~tL~~~GIkdgskL~L 138 (167)
++|-+.|+...+++.||+.|++..+|+....||+- +|.++ .++++|..+ -++.+|.+
T Consensus 877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI 939 (1203)
T KOG4598|consen 877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITI 939 (1203)
T ss_pred hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEE
Confidence 36789999999999999999999999999999862 33333 355677654 35566655
No 185
>PRK08453 fliD flagellar capping protein; Validated
Probab=34.32 E-value=63 Score=31.90 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=37.8
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhh-----------hCCCCCceEEEEcCeecC
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMV-----------SGLEPREQRLLFKGKERE 120 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~-----------TGVppe~QKLifkGK~Ld 120 (167)
-.+.+.++++.|.|+|++..|+.+|..+|-.. +| ...-.+|++.++..-
T Consensus 129 ~~~~~~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etG 188 (673)
T PRK08453 129 TTLKFYTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTG 188 (673)
T ss_pred ceEEEEECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcC
Confidence 44666777899999999999999999999942 44 222477888887763
No 186
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=34.24 E-value=30 Score=33.06 Aligned_cols=19 Identities=42% Similarity=0.817 Sum_probs=15.4
Q ss_pred ceeeEecC--CceeEEeecCC
Q 031040 46 EIKWELRP--GGMLVQKRESG 64 (167)
Q Consensus 46 ~~~we~rp--ggmlvq~r~~~ 64 (167)
..+|++|+ ||+|||.||..
T Consensus 360 ~~~~~~k~v~GGlLvQ~~d~~ 380 (515)
T COG0138 360 AAGLEFKRVSGGLLVQERDDG 380 (515)
T ss_pred CcceeEEEEeeeEEEEccccc
Confidence 34688887 99999999843
No 187
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=33.96 E-value=1.3e+02 Score=22.33 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=30.1
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCC-CCceEEE
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLE-PREQRLL 113 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVp-pe~QKLi 113 (167)
|-...++-|.|..|+.+|=+++++++.|. |++-.|+
T Consensus 12 gct~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LF 48 (87)
T cd01776 12 GCTGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLF 48 (87)
T ss_pred CceeeeeecCCCCcHHHHHHHHHHHhccCChhheeEE
Confidence 33667899999999999999999999986 5666664
No 188
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=33.39 E-value=1.1e+02 Score=22.36 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=33.0
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK 115 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk 115 (167)
+++.+.+.|.|.+|+.|+-+.....-++.|.+--|-.+
T Consensus 8 n~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk 45 (77)
T cd01818 8 DNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLK 45 (77)
T ss_pred CCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEE
Confidence 34778899999999999999999999999998777543
No 189
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.35 E-value=1.9e+02 Score=21.85 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=39.6
Q ss_pred CCEEEEEEEc--CCCCHHHHHHHHHhhhCCCCCceEEEE--cCeec---------CCcchhhh--cCCCCCCEEEEec
Q 031040 78 VSKWHDISIK--ATSTFGELKMILSMVSGLEPREQRLLF--KGKER---------EDNEFLHM--VGVRDKDKVLLLE 140 (167)
Q Consensus 78 g~~~~~VeV~--~t~TV~eLK~~Ia~~TGVppe~QKLif--kGK~L---------dD~~tL~~--~GIkdgskL~Lv~ 140 (167)
+.+.+++.++ ...+|+.|-..+... +....|..+| .|... .|++.|+. |-+++||.|.++-
T Consensus 16 nqR~~el~~~~~e~~~vg~liD~~~~~--i~~p~~~sifie~g~lrpGiI~LINd~DWeLleke~y~ledgDiIvfis 91 (96)
T COG5131 16 NQREIELTREEVEGSSVGTLIDALRYF--IYAPTRDSIFIEHGELRPGIICLINDMDWELLEKERYPLEDGDIIVFIS 91 (96)
T ss_pred cceeeEEEEcccCCcchhhHHHHHHHH--HhCCccceeeecCCCCcccEEEEEcCccHhhhhcccccCCCCCEEEEEe
Confidence 3455556554 356788887777774 4444455544 44322 57788887 9999999998764
No 190
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=33.06 E-value=1.9e+02 Score=20.97 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=44.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC-eecCCcchhhhcCCCCCCEEEEe
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG-KEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG-K~LdD~~tL~~~GIkdgskL~Lv 139 (167)
-.+.++|+..+.+..+-+..++++.+|+..--++-+. --+...++-...=++-|+.|-|+
T Consensus 16 p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 16 PYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp -EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred cceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 4567899999999999999999999999888887654 44666677766667777777664
No 191
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=32.26 E-value=24 Score=31.55 Aligned_cols=17 Identities=47% Similarity=0.913 Sum_probs=12.4
Q ss_pred eeEecC--CceeEEeecCC
Q 031040 48 KWELRP--GGMLVQKRESG 64 (167)
Q Consensus 48 ~we~rp--ggmlvq~r~~~ 64 (167)
+||+|. ||+|||.||..
T Consensus 230 ~~~~r~v~GG~LvQ~~D~~ 248 (315)
T PF01808_consen 230 ELEFRSVDGGLLVQDRDNA 248 (315)
T ss_dssp SEEEEEETTEEEEEE--SG
T ss_pred CeEEEEEeccEEEEcCCCC
Confidence 788884 99999999843
No 192
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=32.07 E-value=1.4e+02 Score=21.33 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=34.8
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCe
Q 031040 79 SKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGK 117 (167)
Q Consensus 79 ~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK 117 (167)
++.-.|.+.|..||.|+-..+-+.-|+.++.--++.-|+
T Consensus 9 g~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 9 GSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 356679999999999999999999999999999987774
No 193
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=31.33 E-value=1.6e+02 Score=21.98 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=25.2
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQR 111 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QK 111 (167)
.|.+.|.|.+ .++-+-.++++.|++..+.+++.-.
T Consensus 18 e~~~~v~h~g-------~~tpsr~eirekLa~~~~~~~~~vv 52 (99)
T PRK01178 18 EIKFEVYHEG-------SATPSRKDVRKKLAAMLNADKELVV 52 (99)
T ss_pred EEEEEEEeCC-------CCCCCHHHHHHHHHHHHCcCCCEEE
Confidence 4556666543 3577999999999999996655433
No 194
>PF01562 Pep_M12B_propep: Reprolysin family propeptide; InterPro: IPR002870 This signature covers the region of the propeptide for members of the MEROPS peptidase family M12B (clan MA(M), adamalysin family). The propeptide contains a sequence motif similar to the "cysteine switch" of the matrixins, which mediate cell-cell or cell-matrix interactions.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis
Probab=30.09 E-value=1.6e+02 Score=21.78 Aligned_cols=78 Identities=8% Similarity=0.135 Sum_probs=46.3
Q ss_pred eEecCCceeEEeecCC--CCCCceEEEEEeeCCEEEEEEEcCCCCHH--HHHHHHHhhhC-----CCCCceEEEEcCeec
Q 031040 49 WELRPGGMLVQKRESG--CEGEGSITIRVSTVSKWHDISIKATSTFG--ELKMILSMVSG-----LEPREQRLLFKGKER 119 (167)
Q Consensus 49 we~rpggmlvq~r~~~--~~~~p~I~I~Vk~g~~~~~VeV~~t~TV~--eLK~~Ia~~TG-----Vppe~QKLifkGK~L 119 (167)
|+++..|..+|+|... ...+..+.+.+...++.+.|++.++..+- +++.......| .+..+..-+|.|...
T Consensus 7 ~~v~~~~~~~~~r~~~~~~~~~~~~~~~~~a~g~~~~L~L~~n~~l~~~~~~v~~~~~~g~~~~~~~~~~~~c~Y~G~V~ 86 (131)
T PF01562_consen 7 ERVDRRGRFLQRRSRRRSQDHPSHLSYSFRAFGREFHLDLEPNHSLFSPGFVVEVRNEDGTREESSPSHQEHCHYQGHVE 86 (131)
T ss_pred EEECCCCccceeccccccCCCCceEEEEEEECCEEEEEEEEECCcccCCCCEEEEEcccccccccCCccccceEEEeeeC
Confidence 5666666666777533 23466789999987789999988765421 22222222222 222224457899887
Q ss_pred CCcchhh
Q 031040 120 EDNEFLH 126 (167)
Q Consensus 120 dD~~tL~ 126 (167)
.+.....
T Consensus 87 g~~~S~v 93 (131)
T PF01562_consen 87 GDPGSSV 93 (131)
T ss_pred CCCCCEE
Confidence 6665433
No 195
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=29.09 E-value=69 Score=22.97 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhh
Q 031040 82 HDISIKATSTFGELKMILSMV 102 (167)
Q Consensus 82 ~~VeV~~t~TV~eLK~~Ia~~ 102 (167)
..++++.++|+.++|+.|-+.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 468899999999999988765
No 196
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=28.88 E-value=32 Score=25.76 Aligned_cols=59 Identities=24% Similarity=0.310 Sum_probs=33.8
Q ss_pred EEEEEEEc---CCCCHHHHHHHHHhhhCCCCCceEEEEcCeec----------CCcchhhh--cCCCCCCEEEEec
Q 031040 80 KWHDISIK---ATSTFGELKMILSMVSGLEPREQRLLFKGKER----------EDNEFLHM--VGVRDKDKVLLLE 140 (167)
Q Consensus 80 ~~~~VeV~---~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L----------dD~~tL~~--~GIkdgskL~Lv~ 140 (167)
+.|.++++ ...|+.+|-..|.+. +-.++.-|+..+..+ .|++.+.. |-|+++|.|..+-
T Consensus 18 k~h~v~l~~~~~~~ti~~Li~~l~~n--ll~~r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~~~D~I~FiS 91 (96)
T PF09138_consen 18 KKHKVSLPSDGEPATIKDLIDYLRDN--LLKERPELFLEGGSVRPGILVLINDADWELLGEEDYVLKDGDNITFIS 91 (96)
T ss_dssp SEEEEEE-SSCSC-BHHHHHHHHCCC--T-SSGHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--TTEEEEEEE
T ss_pred eeEEEEcCCCCCCcCHHHHHHHHHHh--ccCCCHhHEecCCeEcCcEEEEEcCccceeecCcceEcCCCCEEEEEc
Confidence 57888888 778999998887752 222233444333221 24455554 8899999997763
No 197
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=28.55 E-value=1.3e+02 Score=24.40 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=44.2
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCce-------EEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQ-------RLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~Q-------KLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
..+.|++.-+++.++++++|..+..++-... .+||+...-- -++.+|+....--+ -.+.+ +|..|.=++.
T Consensus 5 ~~~~i~~~vNG~~~~~~~~~~~~Ll~~LR~~-gltgtK~GC~~G~CGACtVlvdg~~v~SCl~-~a~~~-~G~~V~TiEG 81 (159)
T PRK09908 5 ETITIECTINGMPFQLHAAPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVDGTAIDSCLY-LAAWA-EGKEIRTLEG 81 (159)
T ss_pred CceeEEEEECCEEEEEecCCCCcHHHHHHHc-CCCCCCCCcCCCCCCCcEEEECCcEeehhHh-hHHHh-CCCEEEeecC
Confidence 3456888877888999999999999987764 6666544311 25567765543222 22222 5666666654
No 198
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=27.79 E-value=2.4e+02 Score=20.37 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=32.2
Q ss_pred eeEEeecCCCC--CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhh
Q 031040 56 MLVQKRESGCE--GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMV 102 (167)
Q Consensus 56 mlvq~r~~~~~--~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~ 102 (167)
|||.-|..+.+ -...|.|+|-. .+....+-|++--.|.=+++.|++.
T Consensus 1 MLILsRk~~Esi~IgddI~itVl~i~gnqVkiGi~APk~v~I~R~Eiy~~ 50 (73)
T COG1551 1 MLILSRKVGESIMIGDDIEITVLSIKGNQVKIGINAPKEVSIHREEIYQR 50 (73)
T ss_pred CeeEEeecCceEEecCCeEEEEEEEcCCeEEEeecCChhhhHHHHHHHHH
Confidence 89998886631 14567777765 4456678888877887777776654
No 199
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=27.79 E-value=31 Score=30.92 Aligned_cols=18 Identities=44% Similarity=0.826 Sum_probs=14.5
Q ss_pred eeeEec--CCceeEEeecCC
Q 031040 47 IKWELR--PGGMLVQKRESG 64 (167)
Q Consensus 47 ~~we~r--pggmlvq~r~~~ 64 (167)
..|++| .||+|||.||..
T Consensus 225 ~~~~~r~v~GG~LvQ~~D~~ 244 (311)
T smart00798 225 DGLEFKSVSGGLLVQDRDNG 244 (311)
T ss_pred CceEEEEEeeEEEEECCCCC
Confidence 357888 699999999853
No 200
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=27.68 E-value=2e+02 Score=22.10 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=28.3
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL 113 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi 113 (167)
|.+.|.|.+ .++-|-.++++.|++..|.+++.-.+.
T Consensus 20 i~~~v~h~g-------~~TPSr~evrekla~~l~~d~e~VvV~ 55 (107)
T COG2004 20 IVFVVYHEG-------SPTPSRKEVREKLAAMLGADKELVVVD 55 (107)
T ss_pred EEEEEEeCC-------CCCCCHHHHHHHHHHHHCCCcceEEEE
Confidence 555555543 368899999999999999999877664
No 201
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=27.53 E-value=1.5e+02 Score=21.76 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=26.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCe
Q 031040 82 HDISIKATSTFGELKMILSMVSGLEPREQRLLFKGK 117 (167)
Q Consensus 82 ~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK 117 (167)
-...|+++.||+.+-+-|....++.+.+.-.+|=..
T Consensus 18 ~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~ 53 (87)
T PF04110_consen 18 KKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINN 53 (87)
T ss_dssp -EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEE
T ss_pred cEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcC
Confidence 357899999999999999999999988888777555
No 202
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=27.36 E-value=2.2e+02 Score=20.14 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=28.2
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL 113 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi 113 (167)
++|.+.+.. .-.+-=....++.+|++.|+..++++..+-.+.
T Consensus 32 i~I~I~tar-Pg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 32 TEIIIRATR-TQNVLGEKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred EEEEEEeCC-CceEECCCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 455555432 112222456799999999999999988776653
No 203
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=26.98 E-value=59 Score=19.54 Aligned_cols=18 Identities=6% Similarity=0.235 Sum_probs=14.9
Q ss_pred CHHHHHHHHHhhhCCCCC
Q 031040 91 TFGELKMILSMVSGLEPR 108 (167)
Q Consensus 91 TV~eLK~~Ia~~TGVppe 108 (167)
.-.+|+.+++++||.+..
T Consensus 11 d~~~Fr~lVQ~LTG~~~~ 28 (31)
T PF05678_consen 11 DPSNFRALVQRLTGAPSA 28 (31)
T ss_pred CHHHHHHHHHHhHCcCCC
Confidence 446999999999998764
No 204
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=26.91 E-value=1.3e+02 Score=20.33 Aligned_cols=51 Identities=25% Similarity=0.261 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhc--CCCCCCEEEEe
Q 031040 81 WHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMV--GVRDKDKVLLL 139 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~--GIkdgskL~Lv 139 (167)
.+-.+|.+... +...|+.+.+.-+-++|+...+...|..+ ..++|++|.|.
T Consensus 16 ~~V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~ 68 (82)
T PF13180_consen 16 VVVVSVIPGSP--------AAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLT 68 (82)
T ss_dssp EEEEEESTTSH--------HHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEE
T ss_pred EEEEEeCCCCc--------HHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEE
Confidence 34445655543 34578999999999999999776655443 67888888664
No 205
>PF14284 PcfJ: PcfJ-like protein
Probab=26.73 E-value=26 Score=28.01 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.2
Q ss_pred eeeEecCCceeEEeecCC
Q 031040 47 IKWELRPGGMLVQKRESG 64 (167)
Q Consensus 47 ~~we~rpggmlvq~r~~~ 64 (167)
..-||+|+|++||.|...
T Consensus 127 ~TiEv~~~~~i~Q~rg~~ 144 (169)
T PF14284_consen 127 YTIEVRPDGRIVQARGKC 144 (169)
T ss_pred EEEEECCCCeehhhhccc
Confidence 367999999999999744
No 206
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=26.56 E-value=50 Score=26.70 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=47.6
Q ss_pred eEEEEEeeCCEEEEEE------EcC---------CCCHHHHHHHHHhh------hCCCCCceEEEE--------------
Q 031040 70 SITIRVSTVSKWHDIS------IKA---------TSTFGELKMILSMV------SGLEPREQRLLF-------------- 114 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~Ve------V~~---------t~TV~eLK~~Ia~~------TGVppe~QKLif-------------- 114 (167)
.++|++.+.+..|.++ |++ ++|.-||-.+|.+. .|-.- +..++|
T Consensus 27 LlrVf~~~~g~hH~~def~~g~vPs~elQiYtW~datL~ELtsLvkevnpeaR~kgt~f-~fa~Vf~d~~~~~y~~RevG 105 (151)
T KOG3391|consen 27 LLRVFTQFNGRHHVMDEFEDGNVPSSELQIYTWMDATLRELTSLVKEVNPEARKKGTSF-DFAVVFPDKKSPRYIVREVG 105 (151)
T ss_pred eeeeeeecCCCCcchhhhhcCCCCchheeEeehhhhhHHHHHHHHHHcCHHHhccCceE-EEEEEeccCCCCCceeeeec
Confidence 4677777544555443 333 57888988888762 11110 122232
Q ss_pred ---cC-eecCCcchhhhcCCCCCCEEEEecCCchh
Q 031040 115 ---KG-KEREDNEFLHMVGVRDKDKVLLLEDPAIK 145 (167)
Q Consensus 115 ---kG-K~LdD~~tL~~~GIkdgskL~Lv~~p~~~ 145 (167)
.| |..+|+.+|..++++-||.|-+...|..+
T Consensus 106 ~t~~g~Kg~ddnktL~~~kf~iGD~lDVaI~~p~~ 140 (151)
T KOG3391|consen 106 TTCLGRKGIDDNKTLQQTKFEIGDYLDVAITPPNR 140 (151)
T ss_pred ccccCcccCCccchhhhCCccccceEEEEecCccc
Confidence 12 44689999999999999999887665543
No 207
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=26.53 E-value=1.7e+02 Score=23.81 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=42.0
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhc
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMV 128 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~ 128 (167)
...|.++|+.|- +-|++...+.+.++++...+.+-.+-+ +..|+-+.+..|+.+|
T Consensus 64 g~~veL~V~VGr--I~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 64 GEDVELRVQVGR--IILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred CEEEEEEEEEeE--EEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 456889999883 457777888899998888887765544 4567778888888887
No 208
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=25.40 E-value=81 Score=22.79 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=18.8
Q ss_pred EEEEEcCCCCHHHHHHHHHhhh
Q 031040 82 HDISIKATSTFGELKMILSMVS 103 (167)
Q Consensus 82 ~~VeV~~t~TV~eLK~~Ia~~T 103 (167)
..+.|+.++|+.++|+.|-+..
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 4688999999999999998653
No 209
>PRK00568 carbon storage regulator; Provisional
Probab=25.03 E-value=1.3e+02 Score=21.76 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=26.8
Q ss_pred eeEEeecCCCC--CCceEEEEEee-CCEEEEEEEcCCCCHH----HHHHHHHh
Q 031040 56 MLVQKRESGCE--GEGSITIRVST-VSKWHDISIKATSTFG----ELKMILSM 101 (167)
Q Consensus 56 mlvq~r~~~~~--~~p~I~I~Vk~-g~~~~~VeV~~t~TV~----eLK~~Ia~ 101 (167)
|||.-|..+.+ =...|.|+|-. .+....+-+++-..+. ||.+.|++
T Consensus 1 MLVLtRK~gEsI~Igd~I~I~Vl~i~g~~VrlGI~AP~~v~I~R~Ei~~~i~~ 53 (76)
T PRK00568 1 MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVS 53 (76)
T ss_pred CceEEeeCCCeEEeCCCeEEEEEEEcCCEEEEEEECCCCCeEeHHHHHHHHHH
Confidence 99999987631 13468888774 3344556555544443 44444443
No 210
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=24.96 E-value=1.7e+02 Score=21.25 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=28.9
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhh-CCCCCceEEEE
Q 031040 80 KWHDISIKATSTFGELKMILSMVS-GLEPREQRLLF 114 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~T-GVppe~QKLif 114 (167)
..+.+.+.++.++.++.++|.+.. .++.+++.|+|
T Consensus 28 ~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil 63 (116)
T PF03610_consen 28 NIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLIL 63 (116)
T ss_dssp SEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEE
T ss_pred cEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEE
Confidence 456789999999999999998876 67778888875
No 211
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=24.65 E-value=1.1e+02 Score=26.19 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhh
Q 031040 91 TFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKD 146 (167)
Q Consensus 91 TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~ 146 (167)
...+|++.|+...|+++++|.++..|-.---...+..+ +.+|++|. +.+|....
T Consensus 64 ~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~-~~~gd~vl-v~~P~y~~ 117 (356)
T PRK04870 64 RAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALAC-AKPGATVL-APEPGFVM 117 (356)
T ss_pred CHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHh-cCCCCEEE-ECCCCHHH
Confidence 46899999999999987777777777421111122222 47788874 55777654
No 212
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=23.92 E-value=1.6e+02 Score=19.40 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=36.0
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
|+|+...|. ..+++...|+.|+=+.|....+=.. ---..+|+..+-+. -|+++++|.++
T Consensus 1 I~v~lpdG~---~~~~~~g~T~~d~A~~I~~~l~~~~--~~A~Vng~~vdl~~-----~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGS---IKELPEGSTVLDVAYSIHSSLAKRA--VAAKVNGQLVDLDH-----PLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSC---EEEEETTBBHHHHHHHHSHHHHHCE--EEEEETTEEEETTS-----BB-SSEEEEEE
T ss_pred CEEECCCCC---eeeCCCCCCHHHHHHHHCHHHHhhe--eEEEEcCEECCCCC-----CcCCCCEEEEE
Confidence 455665553 3558899999999999887654111 11236776554333 36677777664
No 213
>PRK09105 putative aminotransferase; Provisional
Probab=23.65 E-value=84 Score=27.44 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=33.8
Q ss_pred CHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhh
Q 031040 91 TFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKD 146 (167)
Q Consensus 91 TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~ 146 (167)
...+|++.|++..|++|+ |.++..|-.--=...+..+ +.+||.|. +.+|.+..
T Consensus 79 ~~~~Lr~aia~~~~v~~e-~I~it~Gs~~ai~~~~~~l-~~~gd~Vl-i~~P~y~~ 131 (370)
T PRK09105 79 LEDDLRTLFAAQEGLPAD-HVMAYAGSSEPLNYAVLAF-TSPTAGLV-TADPTYEA 131 (370)
T ss_pred hHHHHHHHHHHHhCcChh-hEEEcCChHHHHHHHHHHH-cCCCCEEE-EeCCChHH
Confidence 388999999999999887 5556666321111223333 46788874 45676554
No 214
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=22.13 E-value=90 Score=26.88 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHhhhCCCCCceEEEEcCee-cCCcchhhhcCCCCCCEEEEecCCchhhh
Q 031040 88 ATSTFGELKMILSMVSGLEPREQRLLFKGKE-REDNEFLHMVGVRDKDKVLLLEDPAIKDM 147 (167)
Q Consensus 88 ~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~-LdD~~tL~~~GIkdgskL~Lv~~p~~~~~ 147 (167)
|+.. .+|++.|++..|+++.+|.++.+|-. .-+ .|..+ +.+|+ + ++.+|++.+-
T Consensus 52 p~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~--~l~~~-~~~g~-v-~v~~P~y~~y 106 (339)
T PRK06959 52 PEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIR--ALPAL-LPRGR-V-GIAPLAYSEY 106 (339)
T ss_pred CCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHH--HHHHh-cCCCe-E-EEcCCCcHHH
Confidence 4555 89999999999998767888888842 211 23333 46665 3 5678887654
No 215
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.09 E-value=3.2e+02 Score=20.25 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=26.5
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCC
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGL 105 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGV 105 (167)
....+.+......|.+-++...++.++++.+++ -|+
T Consensus 39 e~aIfnI~gT~Sy~V~Fl~~~~s~eev~~ele~-mga 74 (88)
T COG4009 39 ELAIFNIEGTSSYYVVFLEEVESEEEVERELED-MGA 74 (88)
T ss_pred cEEEEEecCceeEEEEEEeccCCHHHHHHHHHH-hCc
Confidence 444566665556777889999999999999944 443
No 216
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=21.95 E-value=43 Score=22.97 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=14.9
Q ss_pred CHHHHHHHHHhhhCCCCCce
Q 031040 91 TFGELKMILSMVSGLEPREQ 110 (167)
Q Consensus 91 TV~eLK~~Ia~~TGVppe~Q 110 (167)
|+.++.+.+++.+||++++.
T Consensus 1 t~~~Ii~~Va~~~~v~~~~i 20 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVEDI 20 (70)
T ss_dssp -HHHHHHHHHHHTT--HHHH
T ss_pred CHHHHHHHHHHHHCCCHHHH
Confidence 68899999999999998764
No 217
>PRK01712 carbon storage regulator; Provisional
Probab=21.83 E-value=1.8e+02 Score=20.32 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=24.8
Q ss_pred eeEEeecCCCC--CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHH
Q 031040 56 MLVQKRESGCE--GEGSITIRVST-VSKWHDISIKATSTFGELKMILS 100 (167)
Q Consensus 56 mlvq~r~~~~~--~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia 100 (167)
|||.-|..+.+ =+..|.|+|-. .+....+-|++--.+.=+++.|.
T Consensus 1 MLvLtRk~gE~I~Igd~I~I~V~~i~~~~VrlGI~AP~~v~I~R~Ei~ 48 (64)
T PRK01712 1 MLILTRKVGESLMIGDDIEVTVLGVKGNQVRIGINAPKEVSVHREEIY 48 (64)
T ss_pred CeeEEccCCCEEEeCCCEEEEEEEEeCCEEEEEEECCCCceEeHHHHH
Confidence 89999987631 03367777775 22344555554444433344433
No 218
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=21.64 E-value=76 Score=27.52 Aligned_cols=58 Identities=7% Similarity=0.052 Sum_probs=41.2
Q ss_pred ceeeEecCCceeEEeecCC----CC-CCceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC
Q 031040 46 EIKWELRPGGMLVQKRESG----CE-GEGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPR 108 (167)
Q Consensus 46 ~~~we~rpggmlvq~r~~~----~~-~~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe 108 (167)
..+|.+++++++|+.|.+- ++ ...++ .++.-..+-.+|+.|-..|++.|.+.+|+...
T Consensus 83 s~~iv~~~~~~i~~~~~G~v~anAGID~SNv-----~~g~~~LLP~DPd~SA~~ir~~l~~~~g~~v~ 145 (245)
T PRK13293 83 SREIVVEAPFILTETKHGHVCANAGIDESNV-----PDGDLLLLPENPDESAERIREGLEELTGKKVG 145 (245)
T ss_pred cceEEeeCCeEEEEeccceEEeccccccccC-----CCCeEEecCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 3457789999999999743 11 11121 22344467789999999999999999998654
No 219
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=21.17 E-value=1.2e+02 Score=29.73 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=28.5
Q ss_pred ceEEEEEeeC-C--EEEEEEEcCC-------CCHHHHHHHHHhhhCCCCC
Q 031040 69 GSITIRVSTV-S--KWHDISIKAT-------STFGELKMILSMVSGLEPR 108 (167)
Q Consensus 69 p~I~I~Vk~g-~--~~~~VeV~~t-------~TV~eLK~~Ia~~TGVppe 108 (167)
..|.|++... + +.|....++. .|+++||.+|++.||+.-+
T Consensus 247 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~~~ 296 (603)
T PRK05841 247 RKLNITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGLDLN 296 (603)
T ss_pred CeEEEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhccccccc
Confidence 4688888864 4 4444455522 4799999999999998754
No 220
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=20.96 E-value=1.3e+02 Score=26.75 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=46.1
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhhhh
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKDMK 148 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~~k 148 (167)
+++...+-+ -+.|+..|...|++--..-|..|-|+|.|....-...+.--.++.||-|-|.....+++++
T Consensus 130 e~qqln~Vl-fdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~GWtry~ltqL~vGDgLRl~~aad~k~~~ 199 (305)
T PF06622_consen 130 ENQQLNVVL-FDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVPGWTRYPLTQLRVGDGLRLYHAADSKERC 199 (305)
T ss_pred CCcEEEEEE-EeCcHHHHHHHHhhhhhccccccceeeecccccceeccceeEeecCCcEEEEeecccccCc
Confidence 444443322 3669999999999988888999999999987765443333334555555554444455544
No 221
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=20.89 E-value=1.2e+02 Score=26.04 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=35.0
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
.+...+.++.+|++.|++.+|+ ++-++..|-..--...|..+ +++|++|.+.
T Consensus 38 ~~~~~~~~~~~l~~~la~~~g~---~~i~~~~g~t~al~~~l~~~-~~~gd~Vl~~ 89 (361)
T cd06452 38 LDEIEKPPIKDFHHDLAEFLGM---DEARVTPGAREGKFAVMHSL-CEKGDWVVVD 89 (361)
T ss_pred cccccCchHHHHHHHHHHHcCC---ceEEEeCCHHHHHHHHHHHh-cCCCCEEEEc
Confidence 3333456899999999999998 56777777532222334444 6788887654
No 222
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=20.73 E-value=99 Score=26.14 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=34.0
Q ss_pred CHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhh
Q 031040 91 TFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKD 146 (167)
Q Consensus 91 TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~ 146 (167)
...+|++.|+...+++|+ +.++..|-.--=...+..+ +.+||.| ++.+|.+..
T Consensus 61 ~~~~lr~aia~~~~~~~~-~I~it~G~~~al~~~~~~l-~~~gd~v-lv~~P~y~~ 113 (353)
T PRK05387 61 NADALRQAIAAYYGLDPE-QVFVGNGSDEVLAHAFLAF-FNHDRPL-LFPDITYSF 113 (353)
T ss_pred cHHHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHHHHHh-cCCCCEE-EEeCCCHHH
Confidence 457999999999999875 5666666421111122333 6788886 466777543
No 223
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=20.47 E-value=1.2e+02 Score=19.33 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=22.0
Q ss_pred HHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCC
Q 031040 94 ELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGV 130 (167)
Q Consensus 94 eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GI 130 (167)
.|++.+++.++++++ .++.+..|.++|+
T Consensus 2 ~l~~~~~~~l~~~~~---------~i~~~~~~~~lG~ 29 (67)
T PF00550_consen 2 QLREIIAEVLGVDPE---------EIDPDTDFFDLGL 29 (67)
T ss_dssp HHHHHHHHHHTSSGG---------CTSTTSBTTTTTS
T ss_pred HHHHHHHHHHCcCHh---------hCCCCCCHHHhCC
Confidence 578888999987766 4666777888887
No 224
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=20.29 E-value=64 Score=30.88 Aligned_cols=17 Identities=41% Similarity=0.943 Sum_probs=13.8
Q ss_pred eeEec--CCceeEEeecCC
Q 031040 48 KWELR--PGGMLVQKRESG 64 (167)
Q Consensus 48 ~we~r--pggmlvq~r~~~ 64 (167)
.|++| .||+|||.||..
T Consensus 358 ~~~~r~v~GG~LvQ~~d~~ 376 (511)
T TIGR00355 358 ELDFKRVNGGLLVQDRDDG 376 (511)
T ss_pred CceEEEEeeEEEEECCCCC
Confidence 57776 799999999853
No 225
>PRK12765 flagellar capping protein; Provisional
Probab=20.12 E-value=2e+02 Score=27.69 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=28.6
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhh
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMV 102 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~ 102 (167)
..+.|++..++..+.|+|++..|+.+|...|-..
T Consensus 131 gt~tlti~~~g~~~tI~i~~~~TL~dl~~aIN~a 164 (595)
T PRK12765 131 GETDLTIFSNGKEYTITVDKSTTYRDLADKINEA 164 (595)
T ss_pred CceEEEEEeCCEEEEEEECCCCCHHHHHHHHhcC
Confidence 3456777777888999999999999999999654
No 226
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=20.02 E-value=1.8e+02 Score=24.94 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhhh
Q 031040 91 TFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKDM 147 (167)
Q Consensus 91 TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~~ 147 (167)
...+|++.|++..+++|+ +.++..|-.--=...+..+ +.+||.|. +.+|....-
T Consensus 60 ~~~~lr~~ia~~~~~~~~-~i~it~G~~~~l~~~~~~l-~~~gd~Vl-v~~p~y~~~ 113 (351)
T PRK14807 60 TAEKLREELARYCSVVPT-NIFVGNGSDEIIHLIMLAF-INKGDVVI-YPHPSFAMY 113 (351)
T ss_pred cHHHHHHHHHHHhCCCcc-cEEEecCHHHHHHHHHHHh-cCCCCEEE-EeCCChHHH
Confidence 368999999999999875 5677777421001223333 67899885 567776543
Done!