Query 031040
Match_columns 167
No_of_seqs 171 out of 1100
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgg_A Ubiquitin carboxyl-term 99.8 1.2E-20 4E-25 137.0 9.0 76 67-143 4-80 (96)
2 1j8c_A Ubiquitin-like protein 99.8 1.6E-20 5.6E-25 142.5 10.2 92 45-141 12-103 (125)
3 1v5t_A 8430435I17RIK protein; 99.8 1.1E-20 3.6E-25 135.0 8.2 77 67-143 4-84 (90)
4 3plu_A Ubiquitin-like modifier 99.8 2.6E-20 9E-25 136.9 9.6 74 66-139 17-91 (93)
5 2bwf_A Ubiquitin-like protein 99.8 1.1E-19 3.6E-24 123.6 10.9 74 70-143 4-77 (77)
6 3phx_B Ubiquitin-like protein 99.8 7.5E-20 2.6E-24 125.8 10.0 72 69-140 3-75 (79)
7 3dbh_I NEDD8; cell cycle, acti 99.8 2E-19 6.7E-24 125.3 10.1 74 67-140 9-83 (88)
8 1v86_A DNA segment, CHR 7, way 99.8 8.9E-20 3E-24 131.8 8.4 75 68-143 15-89 (95)
9 2kk8_A Uncharacterized protein 99.8 1.7E-19 5.8E-24 127.8 9.3 74 69-142 9-84 (84)
10 4dwf_A HLA-B-associated transc 99.8 2.6E-19 8.9E-24 126.1 10.1 74 67-141 2-76 (90)
11 4eew_A Large proline-rich prot 99.8 2E-19 7E-24 126.2 9.5 72 68-140 15-87 (88)
12 1wxv_A BAG-family molecular ch 99.8 2.1E-19 7.1E-24 127.8 9.4 78 67-144 4-87 (92)
13 2dzi_A Ubiquitin-like protein 99.8 3.8E-19 1.3E-23 121.8 9.6 76 67-142 4-80 (81)
14 2wyq_A HHR23A, UV excision rep 99.8 4.8E-19 1.6E-23 122.8 10.2 75 68-142 3-81 (85)
15 1uh6_A Ubiquitin-like 5; beta- 99.8 1.7E-19 6E-24 133.8 8.4 74 66-139 24-98 (100)
16 3v6c_B Ubiquitin; structural g 99.8 5.1E-19 1.7E-23 125.5 10.2 74 67-140 14-88 (91)
17 2lxa_A Ubiquitin-like protein 99.8 1.4E-19 4.8E-24 130.3 6.5 75 70-144 1-80 (87)
18 2kd0_A LRR repeats and ubiquit 99.8 8.5E-19 2.9E-23 124.1 10.4 76 68-143 10-85 (85)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1E-18 3.4E-23 121.9 10.5 75 67-141 4-79 (87)
20 3mtn_B UBA80, ubcep1, ubiquiti 99.8 9.8E-19 3.3E-23 120.5 9.8 72 69-140 2-74 (85)
21 3n3k_B Ubiquitin; hydrolase, p 99.8 6.6E-19 2.3E-23 121.6 8.3 72 69-140 2-74 (85)
22 4fbj_B NEDD8; effector-HOST ta 99.8 8.6E-19 2.9E-23 124.2 9.0 70 71-140 1-71 (88)
23 2faz_A Ubiquitin-like containi 99.8 1.8E-18 6.2E-23 118.4 10.2 73 70-142 2-77 (78)
24 1ndd_A NEDD8, protein (ubiquit 99.8 1.3E-18 4.4E-23 117.1 9.2 70 71-140 1-71 (76)
25 4a20_A Ubiquitin-like protein 99.8 9.6E-19 3.3E-23 128.5 8.9 77 66-142 15-96 (98)
26 1wx8_A Riken cDNA 4931431F19; 99.8 8.2E-19 2.8E-23 125.3 8.3 75 67-141 14-88 (96)
27 2kan_A Uncharacterized protein 99.8 1.8E-18 6E-23 124.9 9.6 75 67-141 12-87 (94)
28 3m62_B UV excision repair prot 99.8 9E-19 3.1E-23 128.7 8.0 72 70-141 1-73 (106)
29 2klc_A Ubiquilin-1; ubiquitin- 99.8 2.4E-18 8.1E-23 125.5 10.0 75 69-143 24-98 (101)
30 1wy8_A NP95-like ring finger p 99.8 3.8E-18 1.3E-22 119.6 10.7 75 67-141 4-81 (89)
31 1wju_A NEDD8 ultimate buster-1 99.8 7.5E-19 2.6E-23 130.4 7.3 75 66-140 13-90 (100)
32 3a9j_A Ubiquitin; protein comp 99.8 2.8E-18 9.5E-23 115.5 9.5 71 71-141 1-72 (76)
33 2hj8_A Interferon-induced 17 k 99.8 1.4E-18 4.8E-23 122.9 8.4 73 69-141 3-76 (88)
34 4hcn_B Polyubiquitin, ubiquiti 99.8 2.1E-18 7E-23 124.5 8.6 73 68-140 20-93 (98)
35 1wgd_A Homocysteine-responsive 99.8 2.1E-18 7.3E-23 122.9 8.2 75 67-141 4-85 (93)
36 2l7r_A Ubiquitin-like protein 99.8 2E-18 6.9E-23 123.8 8.1 73 68-141 17-89 (93)
37 2uyz_B Small ubiquitin-related 99.8 3E-18 1E-22 117.8 8.5 72 69-140 2-74 (79)
38 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 4E-18 1.4E-22 121.0 9.3 70 71-140 2-72 (96)
39 1uel_A HHR23B, UV excision rep 99.7 5.9E-18 2E-22 121.4 9.8 71 71-141 1-75 (95)
40 1v5o_A 1700011N24RIK protein; 99.7 4.6E-18 1.6E-22 123.8 9.2 75 67-141 4-84 (102)
41 1yqb_A Ubiquilin 3; structural 99.7 7.5E-18 2.6E-22 122.8 10.0 75 67-141 19-93 (100)
42 1ttn_A DC-UBP, dendritic cell- 99.7 8.6E-18 2.9E-22 123.1 10.2 74 68-141 21-95 (106)
43 3m63_B Ubiquitin domain-contai 99.7 8.8E-19 3E-23 128.1 4.8 73 69-141 27-99 (101)
44 1sif_A Ubiquitin; hydrophobic 99.7 7.6E-18 2.6E-22 119.3 9.0 72 70-141 9-81 (88)
45 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.7E-17 5.8E-22 121.2 9.9 74 68-141 15-88 (106)
46 2kdb_A Homocysteine-responsive 99.7 5.7E-18 1.9E-22 124.4 7.0 74 66-139 19-99 (99)
47 1yx5_B Ubiquitin; proteasome, 99.7 1.9E-17 6.6E-22 118.7 9.5 71 71-141 1-72 (98)
48 1wyw_B Ubiquitin-like protein 99.7 1.6E-17 5.5E-22 119.9 9.0 74 67-140 18-92 (97)
49 3vdz_A Ubiquitin-40S ribosomal 99.7 2.8E-17 9.5E-22 121.6 9.8 73 69-141 34-107 (111)
50 2fnj_B Transcription elongatio 99.7 2E-17 6.8E-22 126.0 8.8 71 70-140 2-79 (118)
51 3shq_A UBLCP1; phosphatase, hy 99.7 1.2E-17 4E-22 144.4 8.3 77 68-144 3-82 (320)
52 3b1l_X E3 ubiquitin-protein li 99.5 6.9E-19 2.4E-23 119.7 0.0 71 71-141 1-72 (76)
53 2ojr_A Ubiquitin; lanthide-bin 99.7 6.1E-17 2.1E-21 119.5 10.3 74 68-141 33-107 (111)
54 1we6_A Splicing factor, putati 99.7 3.5E-17 1.2E-21 120.6 8.3 73 69-141 26-103 (111)
55 3rt3_B Ubiquitin-like protein 99.7 6.7E-17 2.3E-21 124.1 10.1 73 69-141 80-153 (159)
56 3u30_A Ubiquitin, linear DI-ub 99.7 8E-17 2.7E-21 125.7 10.6 75 67-141 17-92 (172)
57 1x1m_A Ubiquitin-like protein 99.7 4.4E-17 1.5E-21 119.7 8.5 76 68-143 10-101 (107)
58 4ajy_B Transcription elongatio 99.7 5.6E-17 1.9E-21 123.7 9.0 71 70-140 2-79 (118)
59 4b6w_A Tubulin-specific chaper 99.7 7.5E-17 2.6E-21 115.5 9.1 71 70-140 2-82 (86)
60 2dzm_A FAS-associated factor 1 99.7 4E-17 1.4E-21 120.5 7.9 73 69-141 8-81 (100)
61 1wgh_A Ubiquitin-like 3, HCG-1 99.7 9.1E-17 3.1E-21 121.6 9.8 83 67-149 13-106 (116)
62 1wia_A Hypothetical ubiquitin- 99.7 1.3E-16 4.3E-21 113.9 9.8 72 67-141 4-77 (95)
63 2kdi_A Ubiquitin, vacuolar pro 99.7 1.1E-16 3.7E-21 119.3 9.4 72 70-141 9-81 (114)
64 1v2y_A 3300001G02RIK protein; 99.7 3E-17 1E-21 122.4 6.1 74 67-140 4-94 (105)
65 2daf_A FLJ35834 protein; hypot 99.7 8.5E-17 2.9E-21 122.8 8.5 73 68-140 13-87 (118)
66 3l0w_B Monoubiquitinated proli 99.7 1.4E-16 4.8E-21 126.1 9.7 70 71-140 1-71 (169)
67 2gow_A HCG-1 protein, ubiquiti 99.7 1.8E-16 6.3E-21 121.2 9.8 81 67-147 14-105 (125)
68 2kjr_A CG11242; UBL, ubiquitin 99.7 2.4E-16 8.1E-21 114.9 9.7 74 67-140 12-94 (95)
69 1we7_A SF3A1 protein; structur 99.7 2.1E-16 7.1E-21 117.2 9.6 62 79-140 45-106 (115)
70 3rt3_B Ubiquitin-like protein 99.7 1.7E-16 5.7E-21 121.9 8.8 71 71-141 3-76 (159)
71 4dbg_A Ranbp-type and C3HC4-ty 99.7 5.4E-16 1.9E-20 115.9 10.6 73 70-142 24-100 (105)
72 3b08_A Polyubiquitin-C, ubiqui 99.7 3.3E-16 1.1E-20 117.7 9.5 72 71-142 1-73 (152)
73 1v6e_A Cytoskeleton-associated 99.7 2.4E-16 8.3E-21 113.3 8.2 74 67-140 4-86 (95)
74 3b08_A Polyubiquitin-C, ubiqui 99.7 9.7E-16 3.3E-20 115.2 11.5 72 70-141 76-148 (152)
75 3q3f_A Ribonuclease/ubiquitin 99.7 3.2E-16 1.1E-20 127.2 9.2 72 70-141 105-177 (189)
76 3u5e_m 60S ribosomal protein L 99.6 1E-17 3.4E-22 126.6 0.0 70 71-140 1-71 (128)
77 2kj6_A Tubulin folding cofacto 99.6 6.5E-16 2.2E-20 113.1 8.9 73 68-140 12-94 (97)
78 3u30_A Ubiquitin, linear DI-ub 99.6 1E-15 3.6E-20 119.4 9.4 71 70-140 96-167 (172)
79 3u5c_f 40S ribosomal protein S 99.6 7E-17 2.4E-21 126.9 0.0 70 71-140 1-71 (152)
80 1se9_A Ubiquitin family; ubiqu 99.6 4.8E-15 1.6E-19 114.0 10.1 82 67-148 13-109 (126)
81 1wf9_A NPL4 family protein; be 99.6 2.8E-15 9.7E-20 110.3 7.2 75 68-142 5-95 (107)
82 1t0y_A Tubulin folding cofacto 99.6 6.7E-15 2.3E-19 110.7 8.7 76 69-144 5-90 (122)
83 2dzj_A Synaptic glycoprotein S 99.6 3.2E-15 1.1E-19 107.1 6.0 70 69-138 9-85 (88)
84 3ai5_A Yeast enhanced green fl 99.6 1.3E-14 4.3E-19 125.6 10.2 73 68-140 231-304 (307)
85 2kzr_A Ubiquitin thioesterase 99.5 1.6E-14 5.5E-19 101.9 6.6 72 71-142 1-78 (86)
86 1oqy_A HHR23A, UV excision rep 99.5 1.4E-14 5E-19 127.6 7.2 73 68-140 5-82 (368)
87 2xzm_9 RPS31E; ribosome, trans 99.4 2.4E-14 8.1E-19 116.7 0.0 65 71-140 1-66 (189)
88 1wjn_A Tubulin-folding protein 99.4 1.6E-12 5.4E-17 93.5 9.0 73 68-140 7-91 (97)
89 2io1_B Small ubiquitin-related 99.4 2.9E-12 9.9E-17 93.0 9.2 73 68-140 5-78 (94)
90 1wm3_A Ubiquitin-like protein 99.3 1.1E-11 3.8E-16 85.1 8.8 69 71-139 2-71 (72)
91 3a4r_A Nfatc2-interacting prot 99.3 2.3E-11 7.9E-16 85.2 10.1 73 67-139 4-78 (79)
92 2io0_B Small ubiquitin-related 99.3 2.3E-11 7.9E-16 87.9 9.0 74 68-141 3-77 (91)
93 2d07_B Ubiquitin-like protein 99.2 5.9E-11 2E-15 85.7 9.3 74 68-141 15-89 (93)
94 1wz0_A Ubiquitin-like protein 99.2 6E-11 2E-15 87.8 8.7 73 68-140 22-95 (104)
95 2k8h_A Small ubiquitin protein 99.1 9.9E-11 3.4E-15 87.7 7.3 74 68-141 24-98 (110)
96 2eke_C Ubiquitin-like protein 99.1 2E-10 7E-15 85.5 9.0 75 67-141 28-102 (106)
97 3kyd_D Small ubiquitin-related 98.8 2.6E-08 8.9E-13 75.4 9.5 73 68-140 38-111 (115)
98 2pjh_A Protein NPL4, nuclear p 98.8 3.1E-09 1E-13 74.9 3.7 69 71-139 5-78 (80)
99 3pge_A SUMO-modified prolifera 98.8 2.7E-08 9.3E-13 81.5 9.1 73 68-140 27-99 (200)
100 3tix_A Ubiquitin-like protein 98.7 6.1E-08 2.1E-12 79.9 7.9 73 68-140 55-127 (207)
101 4efo_A Serine/threonine-protei 98.7 7.3E-08 2.5E-12 70.7 7.5 70 70-139 14-86 (94)
102 3v7o_A Minor nucleoprotein VP3 98.2 1.4E-07 4.7E-12 78.7 0.0 73 68-140 19-91 (227)
103 2jxx_A Nfatc2-interacting prot 98.2 9.1E-06 3.1E-10 59.5 9.6 73 67-139 22-96 (97)
104 3uf8_A Ubiquitin-like protein 98.1 8.2E-06 2.8E-10 66.2 8.7 73 68-140 19-91 (209)
105 3goe_A DNA repair protein RAD6 98.1 1.9E-05 6.4E-10 56.6 9.4 71 70-140 9-81 (82)
106 3ix6_A TS, tsase, thymidylate 98.1 2.9E-07 9.9E-12 81.3 -0.3 86 68-153 19-104 (360)
107 2bps_A YUKD protein; ubiquitin 98.0 1.8E-05 6.1E-10 56.4 6.3 69 71-139 5-81 (81)
108 2l76_A Nfatc2-interacting prot 97.9 0.0001 3.5E-09 54.1 9.3 73 69-141 20-92 (95)
109 4da1_A Protein phosphatase 1K, 97.8 2.3E-06 8E-11 74.2 0.0 74 68-141 28-101 (389)
110 1wj4_A KIAA0794 protein; UBX d 97.7 0.00019 6.6E-09 54.1 9.1 92 44-140 18-118 (124)
111 2al3_A TUG long isoform; TUG U 97.7 0.00016 5.3E-09 52.7 7.4 71 72-142 11-82 (90)
112 2kc2_A Talin-1, F1; FERM, adhe 97.5 0.00016 5.3E-09 55.5 5.9 68 71-139 14-120 (128)
113 3qx1_A FAS-associated factor 1 97.3 0.0015 5.2E-08 45.3 8.1 72 68-140 5-82 (84)
114 1oey_A P67-PHOX, neutrophil cy 96.1 0.015 5.3E-07 41.4 6.4 50 67-117 2-51 (83)
115 2l32_A Small archaeal modifier 96.1 0.014 4.7E-07 40.2 5.9 60 71-140 1-61 (74)
116 1ryj_A Unknown; beta/alpha pro 96.1 0.082 2.8E-06 35.3 9.7 62 70-140 4-65 (70)
117 4a3p_A Ubiquitin carboxyl-term 96.0 0.044 1.5E-06 44.2 9.6 58 81-138 141-205 (217)
118 2dzk_A UBX domain-containing p 96.0 0.053 1.8E-06 39.6 9.1 72 69-140 12-89 (109)
119 3jyu_A Ubiquitin carboxyl-term 96.0 0.053 1.8E-06 44.2 10.0 58 81-138 153-217 (231)
120 3ivf_A Talin-1; FERM domain, c 95.9 0.057 1.9E-06 46.0 10.2 69 71-139 4-82 (371)
121 1vd2_A Protein kinase C, IOTA 95.4 0.077 2.6E-06 38.1 7.7 50 67-116 3-53 (89)
122 1ip9_A BEM1 protein; ubiquitin 95.4 0.039 1.3E-06 39.7 6.0 68 69-139 11-83 (85)
123 2cr5_A Reproduction 8; UBX dom 95.1 0.14 4.8E-06 37.2 8.5 72 68-140 21-97 (109)
124 1s3s_G P47 protein; AAA ATPase 94.3 0.1 3.4E-06 39.1 6.1 67 69-136 53-123 (127)
125 2daj_A KIAA0977 protein, COBL- 93.9 0.16 5.6E-06 36.7 6.3 70 67-139 7-80 (91)
126 4e71_A Plexin-B2, MM1; transme 93.6 0.5 1.7E-05 35.3 8.7 72 69-140 10-109 (111)
127 4eut_A Serine/threonine-protei 93.3 0.27 9.1E-06 41.2 7.8 59 71-129 313-373 (396)
128 3rpf_C Molybdopterin convertin 92.7 0.41 1.4E-05 31.9 6.6 65 71-140 1-69 (74)
129 2kvr_A Ubiquitin carboxyl-term 92.6 0.11 3.8E-06 39.2 3.9 32 83-114 59-90 (130)
130 1vjk_A Molybdopterin convertin 92.5 1.1 3.7E-05 31.4 8.9 56 80-140 27-93 (98)
131 2r2o_A Plexin-B1; effector dom 92.2 0.94 3.2E-05 35.0 8.7 73 69-141 23-128 (138)
132 1wgk_A Riken cDNA 2900073H19 p 91.0 1.2 4.3E-05 32.6 8.1 70 69-140 10-103 (114)
133 3h6n_A Plexin-D1; structural g 90.5 2.2 7.4E-05 32.6 9.1 61 80-140 17-103 (127)
134 1tyg_B YJBS; alpha beta barrel 90.5 0.93 3.2E-05 32.0 6.7 60 74-140 22-82 (87)
135 2qjl_A URM1, ubiquitin-related 90.3 2.9 0.0001 29.2 9.3 58 79-139 19-93 (99)
136 2hj1_A Hypothetical protein; s 89.1 2.7 9.4E-05 30.2 8.4 68 68-140 10-84 (97)
137 4e74_A Plexin-A4; RBD, structu 88.9 2 6.9E-05 32.2 7.8 72 69-140 12-113 (117)
138 3po0_A Small archaeal modifier 88.8 2.1 7E-05 29.1 7.3 58 78-140 16-84 (89)
139 1fm0_D Molybdopterin convertin 88.7 1 3.6E-05 29.8 5.6 54 81-140 18-76 (81)
140 1f0z_A THis protein; ubiquitin 88.6 0.71 2.4E-05 30.1 4.6 53 83-140 9-61 (66)
141 2cu3_A Unknown function protei 88.6 1 3.4E-05 29.2 5.3 55 78-140 5-59 (64)
142 3kuz_A Plexin-C1; structural g 87.9 4.2 0.00014 30.9 9.1 61 80-140 39-125 (126)
143 1q1o_A Cell division control p 87.9 1 3.5E-05 32.9 5.4 47 70-116 5-64 (98)
144 3qa8_A MGC80376 protein; kinas 87.6 0.53 1.8E-05 44.0 4.7 57 72-128 314-371 (676)
145 2kl0_A Putative thiamin biosyn 86.1 2 6.7E-05 29.0 5.8 55 78-140 6-60 (73)
146 1y8x_B Ubiquitin-activating en 85.4 0.84 2.9E-05 33.1 3.8 62 81-143 6-85 (98)
147 2eel_A Cell death activator CI 84.9 1.8 6.3E-05 31.1 5.4 66 72-140 11-78 (91)
148 2q5w_D Molybdopterin convertin 84.6 1 3.5E-05 29.6 3.8 55 80-140 16-72 (77)
149 2ylm_A Ubiquitin carboxyl-term 83.7 0.91 3.1E-05 41.2 4.1 31 83-113 39-69 (530)
150 1rws_A Hypothetical protein PF 83.1 0.43 1.5E-05 32.2 1.3 48 83-139 24-71 (77)
151 2l52_A Methanosarcina acetivor 82.9 3.6 0.00012 28.9 6.2 67 70-140 3-94 (99)
152 2g1e_A Hypothetical protein TA 82.0 5.7 0.0002 26.5 6.8 57 83-140 18-85 (90)
153 3ge3_C Toluene-4-monooxygenase 81.9 12 0.0004 26.7 8.7 65 75-139 10-81 (84)
154 1wgr_A Growth factor receptor- 81.3 6.4 0.00022 28.5 7.2 73 70-143 11-94 (100)
155 2juo_A GA-binding protein alph 81.3 5.7 0.00019 28.5 6.7 58 82-139 5-62 (89)
156 3hm6_X Plexin-B1; structural g 80.2 7.4 0.00025 36.7 8.9 72 69-140 256-360 (644)
157 2k5p_A THis protein, thiamine- 79.2 2.3 7.8E-05 29.1 4.0 53 83-140 9-64 (78)
158 2ylm_A Ubiquitin carboxyl-term 78.8 4.4 0.00015 36.7 6.8 72 68-139 128-215 (530)
159 2cu1_A Mitogen-activated prote 78.3 8.8 0.0003 28.3 7.0 48 69-119 7-54 (103)
160 3ig3_A Plxna3 protein; plexin 78.1 11 0.00038 35.4 9.4 72 69-140 232-333 (627)
161 3onh_A Ubiquitin-activating en 78.0 4.9 0.00017 30.6 5.8 58 83-141 9-79 (127)
162 1wj6_A KIAA0049 protein, RSGI 77.0 11 0.00039 27.5 7.3 41 68-108 12-54 (101)
163 1f2r_I Inhibitor of caspase-ac 75.8 12 0.0004 27.3 7.2 66 72-140 20-89 (100)
164 2ns5_A Partitioning-defective 75.6 19 0.00064 25.5 8.9 69 70-139 2-80 (85)
165 2bkf_A Zinc-finger protein NBR 75.5 11 0.00038 26.9 6.8 63 68-146 4-68 (87)
166 1wmh_B Partitioning defective- 75.5 11 0.00037 26.7 6.8 49 68-116 4-54 (86)
167 1ef1_A Moesin; membrane, FERM 74.6 22 0.00075 28.6 9.4 67 71-137 2-74 (294)
168 2k9x_A Tburm1, uncharacterized 72.8 3.8 0.00013 29.9 3.9 59 80-140 21-97 (110)
169 3dwg_C 9.5 kDa culture filtrat 72.1 18 0.00062 24.4 7.2 56 83-140 20-88 (93)
170 2c7h_A RBBP6, retinoblastoma-b 71.4 7.1 0.00024 27.7 4.9 49 67-115 5-55 (86)
171 4gmv_A RAS-associated and plec 67.4 16 0.00054 30.7 7.1 71 71-142 34-115 (281)
172 3u52_E Phenol hydroxylase comp 66.9 20 0.00067 27.0 6.8 73 70-143 23-110 (119)
173 1wgy_A RAP guanine nucleotide 66.4 18 0.00062 26.4 6.4 73 68-140 7-85 (104)
174 3ivf_A Talin-1; FERM domain, c 63.8 62 0.0021 27.0 10.2 69 70-138 85-164 (371)
175 3hk0_A Growth factor receptor- 63.8 23 0.0008 29.2 7.4 73 70-143 10-91 (256)
176 2jrh_A Mitogen-activated prote 61.9 37 0.0013 24.5 7.1 47 70-119 4-50 (94)
177 1d4b_A CIDE B, human cell deat 61.6 5.6 0.00019 30.1 2.9 65 72-140 37-103 (122)
178 1v8c_A MOAD related protein; r 61.4 23 0.00079 27.3 6.5 56 83-140 17-82 (168)
179 2inc_C TOUB protein; DIIRON, 4 60.8 41 0.0014 23.7 9.2 63 77-139 10-80 (83)
180 1ibx_B Chimera of IGG binding 59.3 9.1 0.00031 29.7 3.8 65 73-140 66-134 (145)
181 1pqs_A Cell division control p 55.2 9.8 0.00033 26.2 3.1 36 81-116 3-43 (77)
182 2i1j_A Moesin; FERM, coiled-co 54.4 51 0.0017 30.0 8.6 68 70-137 4-77 (575)
183 2c60_A Human mitogen-activated 54.3 50 0.0017 24.4 6.9 48 69-119 30-77 (111)
184 2npt_B Mitogen-activated prote 53.6 43 0.0015 24.4 6.3 47 70-119 20-66 (100)
185 3h9d_A ATG8, microtubule-assoc 51.2 24 0.00081 26.1 4.8 45 84-128 52-97 (119)
186 3qij_A Protein 4.1; cytoskelet 50.9 19 0.00065 29.5 4.7 71 68-138 15-92 (296)
187 2kmm_A Guanosine-3',5'-BIS(dip 50.0 28 0.00097 22.0 4.6 60 71-140 3-62 (73)
188 1h4r_A Merlin; FERM, neurofibr 49.0 28 0.00096 28.4 5.4 68 69-136 21-93 (314)
189 4gdk_A Ubiquitin-like protein 47.4 38 0.0013 23.8 5.2 58 69-126 4-68 (91)
190 3tca_A Amyloid beta A4 precurs 47.3 47 0.0016 26.1 6.4 73 71-143 35-119 (291)
191 3rui_B Autophagy-related prote 44.8 30 0.001 25.5 4.5 44 84-127 51-95 (118)
192 2kmc_A Fermitin family homolog 44.6 89 0.0031 22.8 8.8 70 70-139 19-97 (102)
193 1n62_A Carbon monoxide dehydro 43.8 35 0.0012 26.3 5.0 36 71-106 4-39 (166)
194 3m95_A Autophagy related prote 43.5 27 0.00091 26.1 4.1 45 84-128 57-102 (125)
195 2zjd_A Microtubule-associated 43.3 29 0.001 26.0 4.3 45 84-128 57-103 (130)
196 2lgx_A Fermitin family homolog 41.4 14 0.00048 27.5 2.2 70 70-139 26-100 (112)
197 1ffv_A CUTS, iron-sulfur prote 40.7 43 0.0015 25.8 5.0 36 71-106 4-39 (163)
198 2nvu_B Maltose binding protein 40.3 52 0.0018 30.5 6.4 60 81-140 713-790 (805)
199 3au4_A Myosin-X; protein-prote 40.2 74 0.0025 28.2 7.2 44 71-114 217-263 (555)
200 3r8s_T 50S ribosomal protein L 38.6 58 0.002 23.0 5.1 41 80-120 28-69 (93)
201 3hrd_D Nicotinate dehydrogenas 37.6 43 0.0015 25.8 4.5 28 70-97 3-30 (160)
202 2r2q_A Gamma-aminobutyric acid 35.8 41 0.0014 24.2 3.9 45 84-128 48-93 (110)
203 4dxa_B KREV interaction trappe 34.9 34 0.0011 28.2 3.8 38 67-108 2-42 (322)
204 4dxe_H ACP, acyl carrier prote 34.8 27 0.00094 24.3 2.8 39 83-130 19-58 (101)
205 1rm6_C 4-hydroxybenzoyl-COA re 34.2 64 0.0022 24.5 5.0 35 72-106 4-38 (161)
206 1eo6_A GATE-16, golgi-associat 33.8 44 0.0015 24.3 3.9 45 84-128 49-94 (117)
207 4ehi_A Bifunctional purine bio 33.7 19 0.00065 33.2 2.2 18 47-64 379-398 (534)
208 2i1s_A Hypothetical protein; m 32.3 1.3E+02 0.0043 23.1 6.6 46 69-114 7-56 (188)
209 1vq8_S 50S ribosomal protein L 31.4 74 0.0025 22.1 4.6 35 80-114 23-57 (85)
210 1t3q_A Quinoline 2-oxidoreduct 31.0 78 0.0027 24.0 5.1 29 70-98 9-37 (168)
211 3tve_T 50S ribosomal protein L 30.7 74 0.0025 22.4 4.5 40 80-119 22-62 (92)
212 2kkc_A Sequestosome-1; P62, PB 30.1 94 0.0032 22.3 5.1 27 90-116 42-69 (102)
213 2zjr_Q 50S ribosomal protein L 29.6 53 0.0018 23.3 3.6 38 82-119 25-63 (95)
214 3hvz_A Uncharacterized protein 29.4 1E+02 0.0034 20.8 4.9 64 70-143 7-70 (78)
215 2bti_A Carbon storage regulato 29.1 94 0.0032 20.6 4.6 48 54-101 1-55 (63)
216 2wlb_A ETP1-FD, electron trans 29.0 71 0.0024 21.7 4.2 35 69-107 2-37 (103)
217 3zrp_A Serine-pyruvate aminotr 28.8 68 0.0023 25.2 4.5 52 90-144 35-87 (384)
218 1zcz_A Bifunctional purine bio 27.8 21 0.00072 32.4 1.4 16 48-63 317-334 (464)
219 3zzm_A Bifunctional purine bio 27.1 22 0.00075 32.7 1.4 17 48-64 370-388 (523)
220 2ktr_A Sequestosome-1; autopha 26.3 1.5E+02 0.0052 21.8 5.7 27 90-116 57-84 (117)
221 2bt6_A Adrenodoxin 1; rutheniu 26.0 75 0.0026 21.8 3.9 36 68-107 4-40 (108)
222 3j21_T 50S ribosomal protein L 26.0 1E+02 0.0035 21.4 4.5 35 80-114 24-58 (86)
223 3pvl_A Myosin VIIA isoform 1; 25.9 95 0.0033 28.7 5.5 45 70-114 263-309 (655)
224 3euc_A Histidinol-phosphate am 25.8 55 0.0019 25.9 3.5 49 90-139 67-115 (367)
225 2v1y_A Phosphatidylinositol-4, 25.6 1.3E+02 0.0046 21.8 5.2 34 69-102 18-52 (108)
226 2c0r_A PSAT, phosphoserine ami 24.7 55 0.0019 26.0 3.3 51 91-142 50-101 (362)
227 2l66_A SSO7C4, transcriptional 24.3 61 0.0021 19.9 2.8 28 115-142 11-38 (53)
228 1elu_A L-cysteine/L-cystine C- 23.2 59 0.002 25.7 3.2 55 90-146 59-113 (390)
229 1iug_A Putative aspartate amin 23.1 62 0.0021 25.2 3.2 47 91-139 35-81 (352)
230 1yfb_A Transition state regula 22.8 57 0.0019 21.0 2.5 29 114-142 20-48 (59)
231 3kgw_A Alanine-glyoxylate amin 22.8 62 0.0021 25.5 3.2 50 90-140 56-105 (393)
232 3ejb_A Acyl carrier protein; p 22.5 67 0.0023 21.9 3.0 46 84-138 16-62 (97)
233 2ch1_A 3-hydroxykynurenine tra 21.3 67 0.0023 25.6 3.2 55 90-146 51-105 (396)
234 2fnu_A Aminotransferase; prote 21.2 77 0.0026 25.0 3.5 48 89-139 31-80 (375)
235 2dhz_A RAP guanine nucleotide 21.2 1.4E+02 0.0048 22.2 4.7 72 69-140 8-91 (120)
236 3aa0_C 21MER peptide from leuc 21.1 22 0.00076 19.7 0.2 10 2-11 6-15 (26)
237 3w1s_C Ubiquitin-like protein 20.5 2.2E+02 0.0076 19.8 6.8 67 68-138 6-82 (91)
238 2huf_A Alanine glyoxylate amin 20.2 68 0.0023 25.5 3.0 50 89-139 51-100 (393)
No 1
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.83 E-value=1.2e-20 Score=137.04 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=72.1
Q ss_pred CCceEEEEEeeCCEEE-EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCc
Q 031040 67 GEGSITIRVSTVSKWH-DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPA 143 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~-~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~ 143 (167)
+..+|+|+|+++++.| .|+|++++||.+||++|++.+|+||++|||+|+||.|+|+ +|++|||+++++|+|+.++.
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 4568999999988999 6999999999999999999999999999999999999999 99999999999999998766
No 2
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=1.6e-20 Score=142.55 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=83.8
Q ss_pred cceeeEecCCceeEEeecCCCCCCceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcch
Q 031040 45 HEIKWELRPGGMLVQKRESGCEGEGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEF 124 (167)
Q Consensus 45 ~~~~we~rpggmlvq~r~~~~~~~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~t 124 (167)
....||.+|.|+.+++-+ ..+|+|+|++.++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+
T Consensus 12 ~~~~~~~~~~~s~~~~~~-----~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~t 86 (125)
T 1j8c_A 12 RPSRGPAAAQGSAAAPAE-----PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDT 86 (125)
T ss_dssp SSCCCSCCCCCSSSCCCC-----CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSC
T ss_pred ChhhCCcCCCCCCcccCC-----CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCC
Confidence 445799999999988765 357899999866788999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCEEEEecC
Q 031040 125 LHMVGVRDKDKVLLLED 141 (167)
Q Consensus 125 L~~~GIkdgskL~Lv~~ 141 (167)
|++|||+++++|+|+..
T Consensus 87 L~dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 87 LIQHGIHDGLTVHLVIK 103 (125)
T ss_dssp GGGTTCSSSEEEEEEEC
T ss_pred HHHcCCCCCCEEEEEec
Confidence 99999999999999864
No 3
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.83 E-value=1.1e-20 Score=135.04 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=73.1
Q ss_pred CCceEEEEEeeCCEEEEE-EEcCCCCHHHHHHHHHhhhCCCCCceEEE---EcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 67 GEGSITIRVSTVSKWHDI-SIKATSTFGELKMILSMVSGLEPREQRLL---FKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~~V-eV~~t~TV~eLK~~Ia~~TGVppe~QKLi---fkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
..++|+|+|+++++.|.| +|++++||.+||++|++.+|+||++|||+ |+|++|+|+.+|++|+|+++++|+|+.+|
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 356799999998899999 99999999999999999999999999999 99999999999999999999999999887
Q ss_pred c
Q 031040 143 A 143 (167)
Q Consensus 143 ~ 143 (167)
+
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 6
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.83 E-value=2.6e-20 Score=136.94 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=68.5
Q ss_pred CCCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 66 EGEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 66 ~~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
+.+|+|+|+|++ .++++.|+++|++||++||++|++.+|+||++|+|+|.|++|+|+.+|++|+|++|++|+|.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 357899999997 66899999999999999999999999999999999999999999999999999999999984
No 5
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.82 E-value=1.1e-19 Score=123.56 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=69.7
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCc
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPA 143 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~ 143 (167)
.|+|+|+++++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..|+
T Consensus 4 ~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 77 (77)
T 2bwf_A 4 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQP 77 (77)
T ss_dssp EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcCC
Confidence 38899998778999999999999999999999999999999999999999999999999999999999987653
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=125.85 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=68.3
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+.|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 568999998 568899999999999999999999999999999999999999999999999999999999975
No 7
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.80 E-value=2e-19 Score=125.29 Aligned_cols=74 Identities=26% Similarity=0.379 Sum_probs=69.6
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
....|+|+|++ .++.+.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|+|+++++|+|+.
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 45679999997 568899999999999999999999999999999999999999999999999999999999975
No 8
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=8.9e-20 Score=131.77 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=69.7
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCc
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPA 143 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~ 143 (167)
..+|+|+|++.+++|.|+|++++||.+||++|++.+|+||++|||+|+|+.|+| .+|++|+|+++++|+|+..++
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSSC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEeccc
Confidence 457999999988999999999999999999999999999999999999999955 599999999999999998654
No 9
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.80 E-value=1.7e-19 Score=127.83 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=69.4
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCee-cCCcchhhhcCCCCCCEEEEecCC
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKE-REDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~-LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
..|+|+|++ .++.+.++|++++||++||++|++.+|+||++|+|+|+|++ |+|+.+|++|||++|++|+|+..|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 468999997 55889999999999999999999999999999999999999 999999999999999999998765
No 10
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.80 E-value=2.6e-19 Score=126.10 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=69.3
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.+++|+|+|++ .++++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||| ++++|+|+..
T Consensus 2 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp CCCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEec
Confidence 35789999998 56889999999999999999999999999999999999999999999999999 8999999864
No 11
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=126.17 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=67.9
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++.|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++||| +|++|||+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 5679999998 56889999999999999999999999999999999999999999999999999 899999974
No 12
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=2.1e-19 Score=127.76 Aligned_cols=78 Identities=24% Similarity=0.467 Sum_probs=71.1
Q ss_pred CCceEEEEEeeCCEEEEEEEcCC-----CCHHHHHHHHHhhhCCCCCceEEEEcCeecCC-cchhhhcCCCCCCEEEEec
Q 031040 67 GEGSITIRVSTVSKWHDISIKAT-----STFGELKMILSMVSGLEPREQRLLFKGKERED-NEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~~VeV~~t-----~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD-~~tL~~~GIkdgskL~Lv~ 140 (167)
...+|+|+|++.++.|.|+|+++ +||.+||++|++.+|+||++|+|+|+|+.|+| +.+|++|||+++++|+|+.
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 35689999999778899999996 99999999999999999999999999999998 5589999999999999998
Q ss_pred CCch
Q 031040 141 DPAI 144 (167)
Q Consensus 141 ~p~~ 144 (167)
.+..
T Consensus 84 ~~~~ 87 (92)
T 1wxv_A 84 KKNS 87 (92)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 6553
No 13
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=121.85 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=70.1
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
++..|+|+|++ .++.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..+
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 45679999996 45788999999999999999999999999999999999999999999999999999999998653
No 14
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.79 E-value=4.8e-19 Score=122.84 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=68.7
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhh---hCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMV---SGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~---TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
+..|+|+|++ .++.+.++|++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 4678999998 4588999999999999999999997 8999999999999999999999999999999999998754
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=1.7e-19 Score=133.76 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=69.5
Q ss_pred CCCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 66 EGEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 66 ~~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
+++++|+|+|++ .++++.|+|++++||++||++|++.+|+||++|+|+|.||+|+|+.+|++|||+++++|+|.
T Consensus 24 ~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 356789999997 36889999999999999999999999999999999999999999999999999999999986
No 16
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.79 E-value=5.1e-19 Score=125.51 Aligned_cols=74 Identities=26% Similarity=0.424 Sum_probs=69.4
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+..|+|+|++ .++++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 35679999996 558899999999999999999999999999999999999999999999999999999999975
No 17
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.4e-19 Score=130.25 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=67.7
Q ss_pred eEEEEEee-CCEEEEEEEc--CCCCHHHHHHHH-HhhhCCCCCceEEEEcCeecCCcchhhhcCC-CCCCEEEEecCCch
Q 031040 70 SITIRVST-VSKWHDISIK--ATSTFGELKMIL-SMVSGLEPREQRLLFKGKEREDNEFLHMVGV-RDKDKVLLLEDPAI 144 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~--~t~TV~eLK~~I-a~~TGVppe~QKLifkGK~LdD~~tL~~~GI-kdgskL~Lv~~p~~ 144 (167)
+|+|+||+ .++++.|+|+ +++||.+||++| ++.+|+||++|||+|+||+|+|+.+|++|+| +++++|+|+..|..
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~ 80 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL 80 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCc
Confidence 47899998 4466777655 999999999999 9999999999999999999999999999999 69999999998874
No 18
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=8.5e-19 Score=124.12 Aligned_cols=76 Identities=26% Similarity=0.376 Sum_probs=71.0
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCc
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPA 143 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~ 143 (167)
-.++.+.++++++.+.++|++++||++||++|++.+|+||++|+|+|+|+.|+|+.+|++|||++|++|+|+..|.
T Consensus 10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~~ 85 (85)
T 2kd0_A 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQG 85 (85)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCCC
T ss_pred CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 3567888888889999999999999999999999999999999999999999999999999999999999998763
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1e-18 Score=121.93 Aligned_cols=75 Identities=25% Similarity=0.315 Sum_probs=70.4
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
++++|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|+|+++++|+|+..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence 46789999998 4688999999999999999999999999999999999999999999999999999999999864
No 20
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=9.8e-19 Score=120.52 Aligned_cols=72 Identities=26% Similarity=0.406 Sum_probs=67.5
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++|+|+|++ .++++.++|++++||.+||++|++.+++||++|+|+|+|+.|+|+.+|++|+|+++++|+|+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 568999997 458899999999999999999999999999999999999999999999999999999999985
No 21
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=6.6e-19 Score=121.63 Aligned_cols=72 Identities=25% Similarity=0.410 Sum_probs=66.4
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++|+|+|++ .++++.++|++++||.+||++|++.+++||++|+|+|+|++|+|+.+|++|+|+++++|+|+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 468899996 457899999999999999999999999999999999999999999999999999999999985
No 22
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.78 E-value=8.6e-19 Score=124.25 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=65.9
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 5788886 558899999999999999999999999999999999999999999999999999999999985
No 23
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.8e-18 Score=118.42 Aligned_cols=73 Identities=30% Similarity=0.409 Sum_probs=66.2
Q ss_pred eEEEEEee-CCEE-EEEE-EcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 70 SITIRVST-VSKW-HDIS-IKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 70 ~I~I~Vk~-g~~~-~~Ve-V~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
.|+|+|++ .++. +.++ |++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|||++|++|+|+..+
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 47888886 3344 6899 999999999999999999999999999999999999999999999999999998654
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.77 E-value=1.3e-18 Score=117.12 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=65.9
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 5788887 457889999999999999999999999999999999999999999999999999999999975
No 25
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.77 E-value=9.6e-19 Score=128.48 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=66.7
Q ss_pred CCCceEEEEEee-CCEEEEE--EEcCCCCHHHHHHHH-HhhhCCCCCceEEEEcCeecCCcchhhhcCC-CCCCEEEEec
Q 031040 66 EGEGSITIRVST-VSKWHDI--SIKATSTFGELKMIL-SMVSGLEPREQRLLFKGKEREDNEFLHMVGV-RDKDKVLLLE 140 (167)
Q Consensus 66 ~~~p~I~I~Vk~-g~~~~~V--eV~~t~TV~eLK~~I-a~~TGVppe~QKLifkGK~LdD~~tL~~~GI-kdgskL~Lv~ 140 (167)
..++.|+|+||+ .++.+.+ +|++++||++||++| ++.+|+||++|||+|+|+.|+|+.+|++|+| ++|++|+||.
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp ---CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 356789999998 4455555 677999999999999 8999999999999999999999999999999 9999999987
Q ss_pred CC
Q 031040 141 DP 142 (167)
Q Consensus 141 ~p 142 (167)
..
T Consensus 95 sk 96 (98)
T 4a20_A 95 KP 96 (98)
T ss_dssp CC
T ss_pred eC
Confidence 53
No 26
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=8.2e-19 Score=125.31 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=70.2
Q ss_pred CCceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 67 GEGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
++.+|+|+|++.++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence 356799999986678899999999999999999999999999999999999999999999999999999999864
No 27
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=1.8e-18 Score=124.89 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=69.6
Q ss_pred CCceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCc-chhhhcCCCCCCEEEEecC
Q 031040 67 GEGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDN-EFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~-~tL~~~GIkdgskL~Lv~~ 141 (167)
....|+|+|++.+.++.++|++++||.+||++|++.+|+||++|+|+|+||+|+|+ .+|++|||+++++|+|+..
T Consensus 12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 35679999998555889999999999999999999999999999999999999999 9999999999999999864
No 28
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9e-19 Score=128.73 Aligned_cols=72 Identities=18% Similarity=0.328 Sum_probs=66.8
Q ss_pred eEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 70 SITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
+|+|+|++ +++.+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEc
Confidence 47899997 5688999999999999999999999999999999999999999999999999999999999864
No 29
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=125.49 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=69.7
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCc
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPA 143 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~ 143 (167)
..|+|+|++.++.+.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||++|++|+|+..+.
T Consensus 24 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 24 KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp CCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 568999998667889999999999999999999999999999999999999999999999999999999987543
No 30
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.8e-18 Score=119.63 Aligned_cols=75 Identities=28% Similarity=0.337 Sum_probs=68.8
Q ss_pred CCceEEEEEee-CC-EEEEE-EEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 67 GEGSITIRVST-VS-KWHDI-SIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~-~~~~V-eV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
+..+|+|+|++ .+ +.+.+ +|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 35679999997 34 68999 599999999999999999999999999999999999999999999999999999854
No 31
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=7.5e-19 Score=130.36 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred CCCceEEEEEee---CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 66 EGEGSITIRVST---VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 66 ~~~p~I~I~Vk~---g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+.++|+|++.. +++.++|+|++++||.+||++|++.+|+||++|+|||+||+|+|+.||++|+|+++++|++|.
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 456788888887 147899999999999999999999999999999999999999999999999999999998875
No 32
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.76 E-value=2.8e-18 Score=115.48 Aligned_cols=71 Identities=25% Similarity=0.399 Sum_probs=66.2
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|++ .++.+.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 5788887 4578899999999999999999999999999999999999999999999999999999999854
No 33
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=122.92 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=68.2
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.+|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|||++|++|+|+..
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 368999997 3578899999999999999999999999999999999999999999999999999999999864
No 34
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.1e-18 Score=124.46 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=67.4
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
...|+|+|++ .++.+.|+|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 4568999996 557899999999999999999999999999999999999999999999999999999999985
No 35
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=2.1e-18 Score=122.92 Aligned_cols=75 Identities=25% Similarity=0.332 Sum_probs=67.1
Q ss_pred CCceEEEEEeeC-CE--EEEEEEcCCCCHHHHHHHHHhhh--CCCCCceEEEEcCeecCCcchhhhc--CCCCCCEEEEe
Q 031040 67 GEGSITIRVSTV-SK--WHDISIKATSTFGELKMILSMVS--GLEPREQRLLFKGKEREDNEFLHMV--GVRDKDKVLLL 139 (167)
Q Consensus 67 ~~p~I~I~Vk~g-~~--~~~VeV~~t~TV~eLK~~Ia~~T--GVppe~QKLifkGK~LdD~~tL~~~--GIkdgskL~Lv 139 (167)
.+..|+|+|++. +. .+.|+|++++||.+||++|++.+ |+||++|||+|+|+.|+|+.+|++| +|+++++|||+
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 356789999983 34 56777789999999999999999 9999999999999999999999999 99999999998
Q ss_pred cC
Q 031040 140 ED 141 (167)
Q Consensus 140 ~~ 141 (167)
..
T Consensus 84 ~~ 85 (93)
T 1wgd_A 84 CN 85 (93)
T ss_dssp CC
T ss_pred eC
Confidence 64
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=123.84 Aligned_cols=73 Identities=22% Similarity=0.390 Sum_probs=66.9
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
++.|+|+|++ ++.+.++|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|+|+++++|+|+..
T Consensus 17 ~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 17 RGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp ---CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred CCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 4569999999 578899999999999999999999999999999999999999999999999999999999853
No 37
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.75 E-value=3e-18 Score=117.81 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=67.9
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+.|+|+|++ .++.+.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|+|+++++|+|+.
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 468999997 457889999999999999999999999999999999999999999999999999999999985
No 38
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.75 E-value=4e-18 Score=121.05 Aligned_cols=70 Identities=26% Similarity=0.410 Sum_probs=66.1
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++ .++.+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|+.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 6788886 457899999999999999999999999999999999999999999999999999999999985
No 39
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.9e-18 Score=121.43 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=66.0
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhh---hCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMV---SGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~---TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|++ .++.+.++|++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEe
Confidence 5788887 4578899999999999999999999 899999999999999999999999999999999998753
No 40
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=4.6e-18 Score=123.82 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=67.4
Q ss_pred CCceEEEEEee--CC---EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCc-chhhhcCCCCCCEEEEec
Q 031040 67 GEGSITIRVST--VS---KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDN-EFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 67 ~~p~I~I~Vk~--g~---~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~-~tL~~~GIkdgskL~Lv~ 140 (167)
+...|+|+|++ ++ +.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||+++++|+|+.
T Consensus 4 ~~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 4 GSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CCCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 34567888876 44 6889999999999999999999999999999999999999887 689999999999999986
Q ss_pred C
Q 031040 141 D 141 (167)
Q Consensus 141 ~ 141 (167)
.
T Consensus 84 ~ 84 (102)
T 1v5o_A 84 K 84 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=7.5e-18 Score=122.82 Aligned_cols=75 Identities=31% Similarity=0.325 Sum_probs=68.8
Q ss_pred CCceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 67 GEGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.+.+|+|+|++....+.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence 356799999984434799999999999999999999999999999999999999999999999999999999864
No 42
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=8.6e-18 Score=123.12 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=69.3
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
...|+|+|++ +++.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 3568999997 5689999999999999999999999999999999999999999999999999999999999864
No 43
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.8e-19 Score=128.12 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=67.9
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
..|+|+|+++++.+.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 3588999987788999999999999999999999999999999999999999999999999999999999864
No 44
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=7.6e-18 Score=119.33 Aligned_cols=72 Identities=24% Similarity=0.412 Sum_probs=66.2
Q ss_pred eEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 70 SITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 47888886 5588999999999999999999999999999999999999999999999999999999999854
No 45
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.7e-17 Score=121.18 Aligned_cols=74 Identities=31% Similarity=0.328 Sum_probs=67.9
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
..+|+|+|++....+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 35689999984434799999999999999999999999999999999999999999999999999999999863
No 46
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.73 E-value=5.7e-18 Score=124.43 Aligned_cols=74 Identities=26% Similarity=0.242 Sum_probs=62.9
Q ss_pred CCCceEEEEEeeC-CE--EEEEEEcCCCCHHHHHHHHHhh-hCCCC-CceEEEEcCeecCCcchhhhc--CCCCCCEEEE
Q 031040 66 EGEGSITIRVSTV-SK--WHDISIKATSTFGELKMILSMV-SGLEP-REQRLLFKGKEREDNEFLHMV--GVRDKDKVLL 138 (167)
Q Consensus 66 ~~~p~I~I~Vk~g-~~--~~~VeV~~t~TV~eLK~~Ia~~-TGVpp-e~QKLifkGK~LdD~~tL~~~--GIkdgskL~L 138 (167)
..+..|+|+|++. ++ .+.|+|++++||++||++|++. .|+|| ++|||+|+||+|+|+.+|++| +|+++++|+|
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3456799999973 33 5689999999999999999985 56665 999999999999999999999 9999999998
Q ss_pred e
Q 031040 139 L 139 (167)
Q Consensus 139 v 139 (167)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.72 E-value=1.9e-17 Score=118.74 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=66.2
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 5788887 4578899999999999999999999999999999999999999999999999999999998754
No 48
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.72 E-value=1.6e-17 Score=119.94 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=68.8
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+..|+|+|++ .++.+.++|.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 34679999997 457889999999999999999999999999999999999999999999999999999999985
No 49
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.72 E-value=2.8e-17 Score=121.63 Aligned_cols=73 Identities=25% Similarity=0.377 Sum_probs=68.5
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
..|+|+|++ .++.+.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 469999996 5588999999999999999999999999999999999999999999999999999999999853
No 50
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.71 E-value=2e-17 Score=126.01 Aligned_cols=71 Identities=24% Similarity=0.156 Sum_probs=67.4
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCC-------CCCEEEEec
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVR-------DKDKVLLLE 140 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIk-------dgskL~Lv~ 140 (167)
.|+|++++++.++.++|.+++||.+||++|++.+|+||++|+|+|+||.|+|+.+|++|||+ ++++|+|+.
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEe
Confidence 47899999888899999999999999999999999999999999999999999999999999 799999974
No 51
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.71 E-value=1.2e-17 Score=144.45 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=70.8
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE---EcCeecCCcchhhhcCCCCCCEEEEecCCch
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL---FKGKEREDNEFLHMVGVRDKDKVLLLEDPAI 144 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi---fkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~ 144 (167)
..+|+|+|+++++.|+|+|++++||++||++|++.|||||++|||+ |+||+|+|+.+|++|||++|++||||++|+.
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 3679999999999999999999999999999999999999999999 9999999999999999999999999998775
No 52
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.55 E-value=6.9e-19 Score=119.74 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=65.9
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 5788887 4578899999999999999999999999999999999999999999999999999999999854
No 53
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.71 E-value=6.1e-17 Score=119.46 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=69.1
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.+.|+|+|++ .++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4579999997 4578899999999999999999999999999999999999999999999999999999999853
No 54
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=3.5e-17 Score=120.59 Aligned_cols=73 Identities=25% Similarity=0.257 Sum_probs=66.9
Q ss_pred ceEEEEEee----CCEEEEEEEcC-CCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 69 GSITIRVST----VSKWHDISIKA-TSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 69 p~I~I~Vk~----g~~~~~VeV~~-t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
..|+|+|++ .++.+.++|++ ++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 457888886 34788999998 99999999999999999999999999999999999999999999999999853
No 55
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.70 E-value=6.7e-17 Score=124.07 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=68.4
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
..|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|||++|++|+|+..
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 468899997 4588999999999999999999999999999999999999999999999999999999999853
No 56
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.70 E-value=8e-17 Score=125.75 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=69.1
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
+++.|+|+|++ +++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 35679999995 6689999999999999999999999999999999999999999999999999999999999853
No 57
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=4.4e-17 Score=119.69 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=66.9
Q ss_pred CceEEEEEeeCC----EEEEEEEcC---------CCCHHHHHHHHHhhh--CCCCCc-eEEEEcCeecCCcchhhhcCCC
Q 031040 68 EGSITIRVSTVS----KWHDISIKA---------TSTFGELKMILSMVS--GLEPRE-QRLLFKGKEREDNEFLHMVGVR 131 (167)
Q Consensus 68 ~p~I~I~Vk~g~----~~~~VeV~~---------t~TV~eLK~~Ia~~T--GVppe~-QKLifkGK~LdD~~tL~~~GIk 131 (167)
+..|+|+|++.+ ..+.|+|++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|||+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 456888999743 488899554 599999999999999 999999 9999999999999999999999
Q ss_pred CCCEEEEecCCc
Q 031040 132 DKDKVLLLEDPA 143 (167)
Q Consensus 132 dgskL~Lv~~p~ 143 (167)
++++|+|+..+.
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999987543
No 58
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.69 E-value=5.6e-17 Score=123.71 Aligned_cols=71 Identities=24% Similarity=0.157 Sum_probs=68.1
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCC-------CCEEEEec
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRD-------KDKVLLLE 140 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkd-------gskL~Lv~ 140 (167)
.|.|+++.++.++.++|.+++||.+||++|+..+|+||++|+|+|.||.|+|+.||++|||++ +++|+|+-
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 378999999889999999999999999999999999999999999999999999999999999 99999984
No 59
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.69 E-value=7.5e-17 Score=115.49 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=64.1
Q ss_pred eEEEEEee---CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE-------cCeecCCcchhhhcCCCCCCEEEEe
Q 031040 70 SITIRVST---VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF-------KGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 70 ~I~I~Vk~---g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif-------kGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
.|+|.|.+ +...+++.+++++||.+||++|+..+|+||++|+|+| .|+.++|+.+|++|||++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 46677765 3377899999999999999999999999999999997 4889999999999999999999998
Q ss_pred c
Q 031040 140 E 140 (167)
Q Consensus 140 ~ 140 (167)
.
T Consensus 82 d 82 (86)
T 4b6w_A 82 D 82 (86)
T ss_dssp E
T ss_pred e
Confidence 6
No 60
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4e-17 Score=120.55 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=65.8
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE-cCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF-KGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif-kGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.++.+++++.+++|+|+|++++||++||++|+++|||||++|||+| +++.|+|+.+|++|+|++|++|||+-.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEec
Confidence 4677888888889999999999999999999999999999999996 433499999999999999999999754
No 61
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=9.1e-17 Score=121.61 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=70.4
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHh------hhCC--CCCceEEEEcCeecCCcchhhhcCCCCC--CE
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSM------VSGL--EPREQRLLFKGKEREDNEFLHMVGVRDK--DK 135 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~------~TGV--ppe~QKLifkGK~LdD~~tL~~~GIkdg--sk 135 (167)
+...|.|+|++ .+++|+++|++++||.+||++|++ ..++ ||++|||||.||+|+|+.+|++|+|+.+ .+
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 35679999996 458999999999999999999999 6675 6999999999999999999999999877 56
Q ss_pred EEEecCCchhhhhh
Q 031040 136 VLLLEDPAIKDMKL 149 (167)
Q Consensus 136 L~Lv~~p~~~~~k~ 149 (167)
|||+..+...+++-
T Consensus 93 lhLvlr~~~~~~~~ 106 (116)
T 1wgh_A 93 MHLVARETLPEPNS 106 (116)
T ss_dssp EEEEECSSCSSSCC
T ss_pred EEEEccCCCCCCCc
Confidence 88887655554443
No 62
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1.3e-16 Score=113.91 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=66.6
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCc-chhhhcCCCCCCEEEEecC
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDN-EFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~-~tL~~~GIkdgskL~Lv~~ 141 (167)
++..|+|+|++ .++.+.++|++++||.+||++|++.+ +++|+|+|+|+.|+|+ .+|++|||+++++|||+..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 45679999997 46889999999999999999999998 9999999999999999 9999999999999999864
No 63
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-16 Score=119.25 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=66.5
Q ss_pred eEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 70 SITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
..+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|||+++++|+|+..
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 45777776 4588999999999999999999999999999999999999999999999999999999999864
No 64
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=3e-17 Score=122.36 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=66.7
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC---------------ceEEEEcCeecC-CcchhhhcC
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPR---------------EQRLLFKGKERE-DNEFLHMVG 129 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe---------------~QKLifkGK~Ld-D~~tL~~~G 129 (167)
.+..|+|+|++ .+++++|+|++++||++||++|++.+++||+ +|+|+|+||.|. |+.+|++||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 34569999986 5589999999999999999999999999984 579999999995 679999999
Q ss_pred CCCCCEEEEec
Q 031040 130 VRDKDKVLLLE 140 (167)
Q Consensus 130 IkdgskL~Lv~ 140 (167)
|++|++|+|+.
T Consensus 84 I~~g~~l~lv~ 94 (105)
T 1v2y_A 84 IRNRDEVSFIK 94 (105)
T ss_dssp CCSSEEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 99999999986
No 65
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.5e-17 Score=122.82 Aligned_cols=73 Identities=23% Similarity=0.255 Sum_probs=67.5
Q ss_pred CceEEEEEe--eCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVS--TVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk--~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+.|+|+|+ .+++.+++++++++||++||+.|+..+++|+++|+|+|+||.|+|++||.+|||++|.+|||+.
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi 87 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEI 87 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEE
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEE
Confidence 456777766 3567899999999999999999999999999999999999999999999999999999999986
No 66
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.68 E-value=1.4e-16 Score=126.15 Aligned_cols=70 Identities=26% Similarity=0.415 Sum_probs=65.9
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|||++|++|+|+.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEE
Confidence 5788887 458899999999999999999999999999999999999999999999999999999999985
No 67
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=121.22 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=69.3
Q ss_pred CCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHh------hhCC--CCCceEEEEcCeecCCcchhhhcCCCCCC--E
Q 031040 67 GEGSITIRVST-VSKWHDISIKATSTFGELKMILSM------VSGL--EPREQRLLFKGKEREDNEFLHMVGVRDKD--K 135 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~------~TGV--ppe~QKLifkGK~LdD~~tL~~~GIkdgs--k 135 (167)
....|+|+|++ .+++++++|++++||++||++|++ ..|+ +|++|||||.||.|+|+.+|++|+|++++ +
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 34579999996 458999999999999999999999 7888 49999999999999999999999999887 6
Q ss_pred EEEecCCchhhh
Q 031040 136 VLLLEDPAIKDM 147 (167)
Q Consensus 136 L~Lv~~p~~~~~ 147 (167)
|||+..+...++
T Consensus 94 lhlv~r~~~~~~ 105 (125)
T 2gow_A 94 MHLVARETLPEP 105 (125)
T ss_dssp EEEEECSCCSSS
T ss_pred EEEEecCCCCcc
Confidence 788765444333
No 68
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.67 E-value=2.4e-16 Score=114.86 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=65.3
Q ss_pred CCceEEEEEeeCC---EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc--Ce---ec-CCcchhhhcCCCCCCEEE
Q 031040 67 GEGSITIRVSTVS---KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK--GK---ER-EDNEFLHMVGVRDKDKVL 137 (167)
Q Consensus 67 ~~p~I~I~Vk~g~---~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk--GK---~L-dD~~tL~~~GIkdgskL~ 137 (167)
++..|+|+|++.. ..++++|++++||.+||++|+..+|+||++|||+|. |+ .| +|+.+|++|||++|++|+
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 3567888888633 478999999999999999999999999999999998 45 45 899999999999999999
Q ss_pred Eec
Q 031040 138 LLE 140 (167)
Q Consensus 138 Lv~ 140 (167)
|+.
T Consensus 92 lvD 94 (95)
T 2kjr_A 92 VVD 94 (95)
T ss_dssp EEE
T ss_pred EEC
Confidence 974
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.67 E-value=2.1e-16 Score=117.22 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=59.8
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 79 SKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 79 ~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|+|+++++|+|+.
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~ 106 (115)
T 1we7_A 45 GQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLAL 106 (115)
T ss_dssp SEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999975
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.67 E-value=1.7e-16 Score=121.87 Aligned_cols=71 Identities=24% Similarity=0.306 Sum_probs=67.2
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE-E-cCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL-F-KGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi-f-kGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
|+|+|++ +++++.++|++++||.+||++|++.+|+||++|+|+ | +|++|+|+.+|++|||+++++|+|+..
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 7888985 568899999999999999999999999999999999 9 799999999999999999999999876
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.66 E-value=5.4e-16 Score=115.90 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=66.3
Q ss_pred eEEEEEeeCC---EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCC-CCCCEEEEecCC
Q 031040 70 SITIRVSTVS---KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGV-RDKDKVLLLEDP 142 (167)
Q Consensus 70 ~I~I~Vk~g~---~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GI-kdgskL~Lv~~p 142 (167)
.+.|+|++.. ..+.++|+|++||++||++|++..|+||++|||+|+|+.++|+.+|++||| ++|++|||+.-.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 5788888732 788999999999999999999999999999999999999999999999999 599999997643
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.66 E-value=3.3e-16 Score=117.72 Aligned_cols=72 Identities=25% Similarity=0.387 Sum_probs=66.9
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 5788886 45789999999999999999999999999999999999999999999999999999999998753
No 73
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2.4e-16 Score=113.32 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=66.5
Q ss_pred CCceEEEEEeeCCE--EEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC---ee----cCCcchhhhcCCCCCCEEE
Q 031040 67 GEGSITIRVSTVSK--WHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG---KE----REDNEFLHMVGVRDKDKVL 137 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~--~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG---K~----LdD~~tL~~~GIkdgskL~ 137 (167)
++..|+|+|++... .++++|++++||.+||++|+..+|+||++|+|+|.| +. ++|+.+|++|||++|++||
T Consensus 4 ~~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp CCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred CCcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 45679999998654 689999999999999999999999999999999987 43 5899999999999999999
Q ss_pred Eec
Q 031040 138 LLE 140 (167)
Q Consensus 138 Lv~ 140 (167)
|+.
T Consensus 84 v~d 86 (95)
T 1v6e_A 84 VID 86 (95)
T ss_dssp EBC
T ss_pred EEE
Confidence 985
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.65 E-value=9.7e-16 Score=115.18 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=66.4
Q ss_pred eEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 70 SITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.+.|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||+++++|+|+..
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 46777775 4578999999999999999999999999999999999999999999999999999999999864
No 75
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.65 E-value=3.2e-16 Score=127.23 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=68.1
Q ss_pred eEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 70 SITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.|+|+|++ .++++.|+|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|+|+++++|+|+..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 48999998 5588999999999999999999999999999999999999999999999999999999999853
No 76
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.65 E-value=1e-17 Score=126.63 Aligned_cols=70 Identities=26% Similarity=0.415 Sum_probs=0.0
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|||++|++|+|+.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEE
Confidence 5678887 457899999999999999999999999999999999999999999999999999999999975
No 77
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=6.5e-16 Score=113.14 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=64.3
Q ss_pred CceEEEEEeeCC---EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCe---e----cCCcchhhhcCCCCCCEEE
Q 031040 68 EGSITIRVSTVS---KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGK---E----REDNEFLHMVGVRDKDKVL 137 (167)
Q Consensus 68 ~p~I~I~Vk~g~---~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK---~----LdD~~tL~~~GIkdgskL~ 137 (167)
...|+|.|++.. ..+++.|++++||++||++|+..+|+||++|+|+|.|+ . ++|+.+|++|+|++|++|+
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 456777777632 37899999999999999999999999999999999984 3 4888999999999999999
Q ss_pred Eec
Q 031040 138 LLE 140 (167)
Q Consensus 138 Lv~ 140 (167)
|+.
T Consensus 92 lvd 94 (97)
T 2kj6_A 92 IID 94 (97)
T ss_dssp EEE
T ss_pred EEe
Confidence 985
No 78
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=119.40 Aligned_cols=71 Identities=25% Similarity=0.406 Sum_probs=65.5
Q ss_pred eEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 70 SITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+.|+|++ .++++.++|++++||.+||++|+..+|+||++|+|+|+|++|+|+.+|++|+|++|++|+|+.
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 35667775 457899999999999999999999999999999999999999999999999999999999975
No 79
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.60 E-value=7e-17 Score=126.86 Aligned_cols=70 Identities=26% Similarity=0.415 Sum_probs=0.0
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++ .++++.|+|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|||+++++|+|+.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEe
Confidence 5678887 457889999999999999999999999999999999999999999999999999999999975
No 80
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=4.8e-15 Score=113.98 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=67.1
Q ss_pred CCceEEEEEee--CCEEEEEEEcCCCCHHHHHHHH-----HhhhCCCC--CceEEEEcCeecCCcchhhhcCCCCC----
Q 031040 67 GEGSITIRVST--VSKWHDISIKATSTFGELKMIL-----SMVSGLEP--REQRLLFKGKEREDNEFLHMVGVRDK---- 133 (167)
Q Consensus 67 ~~p~I~I~Vk~--g~~~~~VeV~~t~TV~eLK~~I-----a~~TGVpp--e~QKLifkGK~LdD~~tL~~~GIkdg---- 133 (167)
....|.|+|++ |.....+++++++||.+||++| ++..|+|+ ++|||||.||.|+|+.||++|+|+++
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTT
T ss_pred hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccC
Confidence 34567888876 4344479999999999999999 56789997 89999999999999999999999999
Q ss_pred --CEEEEecCCchhhhh
Q 031040 134 --DKVLLLEDPAIKDMK 148 (167)
Q Consensus 134 --skL~Lv~~p~~~~~k 148 (167)
++|+|+..+...+++
T Consensus 93 ~v~tmhlVlrl~g~~kk 109 (126)
T 1se9_A 93 AVTTMHVIIQAPVTEKE 109 (126)
T ss_dssp CCEEEEEEECCCSSCCC
T ss_pred CcEEEEEEeccCCcccc
Confidence 578887654443333
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.58 E-value=2.8e-15 Score=110.30 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=65.4
Q ss_pred CceEEEEEeeCCEEEEEEEc-CCCCHHHHHHHHHhhhCCCCCceEEEEcCe-----------e----cCCcchhhhcCCC
Q 031040 68 EGSITIRVSTVSKWHDISIK-ATSTFGELKMILSMVSGLEPREQRLLFKGK-----------E----REDNEFLHMVGVR 131 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~-~t~TV~eLK~~Ia~~TGVppe~QKLifkGK-----------~----LdD~~tL~~~GIk 131 (167)
...|.|+|++..-.+.|+|+ +++||.+||++|++.+|+||++|+|+|.|+ . ++|+.+|++|||+
T Consensus 5 ~~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CCeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 34478999873334579999 999999999999999999999999999998 4 5888999999999
Q ss_pred CCCEEEEecCC
Q 031040 132 DKDKVLLLEDP 142 (167)
Q Consensus 132 dgskL~Lv~~p 142 (167)
+|++|||+..+
T Consensus 85 ~G~~L~l~~~~ 95 (107)
T 1wf9_A 85 HGSMVYLAYEG 95 (107)
T ss_dssp TTCEEECCCSS
T ss_pred CCCEEEEEeCC
Confidence 99999998654
No 82
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.57 E-value=6.7e-15 Score=110.71 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=66.7
Q ss_pred ceEEEEEeeCCE--EEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC---e---e-cCCcchhhhcCCCCCCEEEEe
Q 031040 69 GSITIRVSTVSK--WHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG---K---E-REDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 69 p~I~I~Vk~g~~--~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG---K---~-LdD~~tL~~~GIkdgskL~Lv 139 (167)
..|+|+|++... .+++.|++++||.+||++|+..+|+||++|+|+|.| + . ++|+.+|++|||++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 478999998554 689999999999999999999999999999999987 4 3 478899999999999999998
Q ss_pred c-CCch
Q 031040 140 E-DPAI 144 (167)
Q Consensus 140 ~-~p~~ 144 (167)
. .|.+
T Consensus 85 d~~p~~ 90 (122)
T 1t0y_A 85 DVTGGN 90 (122)
T ss_dssp ECTTCC
T ss_pred eCCCCC
Confidence 5 4553
No 83
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.2e-15 Score=107.11 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=61.7
Q ss_pred ceEEEEEeeC--CEE-EEE-EEcCCCCHHHHHHHHHhh-hCCCCCceEEEEc--CeecCCcchhhhcCCCCCCEEEE
Q 031040 69 GSITIRVSTV--SKW-HDI-SIKATSTFGELKMILSMV-SGLEPREQRLLFK--GKEREDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 69 p~I~I~Vk~g--~~~-~~V-eV~~t~TV~eLK~~Ia~~-TGVppe~QKLifk--GK~LdD~~tL~~~GIkdgskL~L 138 (167)
.+|+|+|++. +.. +.| +|+|++||.+||++|++. .|+||++|+|+|. ||.|+|+.+|++|||+++++|++
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 3589999973 332 368 999999999999999994 8999999999976 99999999999999999999876
No 84
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.55 E-value=1.3e-14 Score=125.55 Aligned_cols=73 Identities=27% Similarity=0.433 Sum_probs=68.8
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
...|+|+|++ .++++.++|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|++|+|+++++|+|+.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 4678999998 457899999999999999999999999999999999999999999999999999999999985
No 85
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.52 E-value=1.6e-14 Score=101.90 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=61.9
Q ss_pred EEEEEeeCCEEEEEE-EcCCCCHHHHHHHHHhhhCCCCCceEEEEcC--eecC---CcchhhhcCCCCCCEEEEecCC
Q 031040 71 ITIRVSTVSKWHDIS-IKATSTFGELKMILSMVSGLEPREQRLLFKG--KERE---DNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 71 I~I~Vk~g~~~~~Ve-V~~t~TV~eLK~~Ia~~TGVppe~QKLifkG--K~Ld---D~~tL~~~GIkdgskL~Lv~~p 142 (167)
|+|+|++.+..+.|+ +++++||.+||+.|++.+|+||++|+|+|.+ |.++ |+.+|++|||++|++|+|..+.
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 467777744355688 9999999999999999999999999999974 7774 6789999999999999988663
No 86
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.51 E-value=1.4e-14 Score=127.60 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=65.9
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHh---hhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEE-EEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSM---VSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKV-LLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~---~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL-~Lv~ 140 (167)
...|+|+||+ .+++|.|+|++++||.+||++|+. .+|+|+++|||+|+||.|+|+.+|++|||+++++| +|+.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 3568899998 468999999999999999999999 68899999999999999999999999999999999 4543
No 87
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.40 E-value=2.4e-14 Score=116.67 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|++ .++++.|+|++++||.+||++|++.+|+||++|+|+|+|++|+|+.+|+ ++++|+|+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEE
Confidence 5788886 4588999999999999999999999999999999999999999999998 899999984
No 88
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=1.6e-12 Score=93.47 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=62.0
Q ss_pred CceEEEEEee----CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC-------eec-CCcchhhhcCCCCCCE
Q 031040 68 EGSITIRVST----VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKG-------KER-EDNEFLHMVGVRDKDK 135 (167)
Q Consensus 68 ~p~I~I~Vk~----g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG-------K~L-dD~~tL~~~GIkdgsk 135 (167)
...|+|+|.. .++.+++.++++.||++||.+|+..||+||..|+|+|.+ ..| +|..+|+.|||.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 3457776653 346888999999999999999999999999999999973 124 6778999999999999
Q ss_pred EEEec
Q 031040 136 VLLLE 140 (167)
Q Consensus 136 L~Lv~ 140 (167)
|+|..
T Consensus 87 I~V~d 91 (97)
T 1wjn_A 87 LLVRW 91 (97)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99976
No 89
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=2.9e-12 Score=92.99 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=67.9
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+.|+|+|+. .++.+.+.|.+++++..|++.+++..|+|+++|+|+|.|+.|.+++|+++|+++++|+|+++.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 4679999996 456788999999999999999999999999999999999999999999999999999999985
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.30 E-value=1.1e-11 Score=85.14 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=64.8
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
|+|+|+. .+..+.+.|.+++++..|++..++..|+++.+|+|+|.|+.|.+++|.++|++++||+|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7888986 45678999999999999999999999999999999999999999999999999999999885
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.29 E-value=2.3e-11 Score=85.23 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=67.2
Q ss_pred CCceEEEEEee-CC-EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 67 GEGSITIRVST-VS-KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
.+..|+|+|+. .+ +.+.+.|.+++++..|+...++..|+++++|+|+|.|+.|.+++|.++|++++||+|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35679999996 44 478899999999999999999999999999999999999999999999999999999886
No 92
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=2.3e-11 Score=87.95 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=67.8
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
.+.|+|+|+. .+..+.+.|.+++++..|++..++..|+++.+|+|+|.|+.|.+++|.++|++++||+|.++..
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 3578999996 4567899999999999999999999999999999999999999999999999999999998753
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.22 E-value=5.9e-11 Score=85.68 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=68.2
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
...|+|+|+. .+..+.+.|.+++++..|+..+++..|+++++|+|+|.|+.|.+++|+++|+++++|+|+++..
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 4579999996 4467889999999999999999999999999999999999999999999999999999998753
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.20 E-value=6e-11 Score=87.82 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=67.9
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
...|+|+|+. .+..+.+.|.+++++..|+..+++..|+++.+|+|+|.|+.|.+++|+++|+++++|+|+++.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 4679999996 446788999999999999999999999999999999999999999999999999999999875
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.14 E-value=9.9e-11 Score=87.66 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=68.3
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
...|+|+|+. .+..+.+.|.+++++..|++.+++..|+++++|+|+|.|+.|.+++|+++|+++++|+|.++..
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 4679999996 4467789999999999999999999999999999999999999999999999999999998754
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.14 E-value=2e-10 Score=85.49 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 67 GEGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
....|+|+|++.+..+.+.|.+++++..|+..+++..|+++.+|+|+|.|+.|.++.|.++|+++++|+|.++..
T Consensus 28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 346799999984467889999999999999999999999999999999999999999999999999999998753
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.81 E-value=2.6e-08 Score=75.36 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=66.6
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+.|+|+|+. .+..+.+.|.+++++..|+...++..|+++..++++|.|+.|.+++|..++++.|||+|.++.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 4679999986 445578999999999999999999999999999999999999999999999999999998864
No 98
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.79 E-value=3.1e-09 Score=74.88 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=57.4
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCee---c--CCcchhhhcCCCCCCEEEEe
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKE---R--EDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~---L--dD~~tL~~~GIkdgskL~Lv 139 (167)
|.|+|+.-.-++.|+|++++||.+|+++|++.++++++.|.|.+.-.+ | .++.+|+++||+.||+|+|.
T Consensus 5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 667777644578899999999999999999999999999888665543 3 36789999999999999874
No 99
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.7e-08 Score=81.49 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=68.0
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
...|+|+|+..+..+.+.|.+++++..|++..++..|+++.+++++|.|+.|.+++|.+++++.+||+|.++.
T Consensus 27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 4568999987667789999999999999999999999999999999999999999999999999999998874
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.65 E-value=6.1e-08 Score=79.87 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=68.0
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
...|+|+|+..+..+.+.|.+++++..|++..++..|+++..++++|.|+.|.+++|..++++.|+|+|.++.
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 4568999987667788999999999999999999999999999999999999999999999999999999875
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.65 E-value=7.3e-08 Score=70.68 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=53.2
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecC--Ccchhhhc-CCCCCCEEEEe
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKERE--DNEFLHMV-GVRDKDKVLLL 139 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~Ld--D~~tL~~~-GIkdgskL~Lv 139 (167)
.|.|+.......|.++|.++.|+..||++|++.|||||++|+|+|.|+.+. .+..-..| .-.+..-|+|+
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 355555666699999999999999999999999999999999999998764 33333333 33444556554
No 102
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.24 E-value=1.4e-07 Score=78.67 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=0.0
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
...|+|+|...+..+.+.|.+++.+..|++..++..|+++..++++|.|+.+.+++|.++++++|||+|.++.
T Consensus 19 ~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 4568888854557778999999999999999999999999999999999999999999999999999998874
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.23 E-value=9.1e-06 Score=59.48 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=65.9
Q ss_pred CCceEEEEEee-CC-EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 67 GEGSITIRVST-VS-KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
....|+|+|+. .+ +.+.+.|.++.++.-|....++..|+++..-+++|.|..+.+++|.+++++.|||.|-+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34678999986 33 467899999999999999999999999999999999999999999999999999999765
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.15 E-value=8.2e-06 Score=66.16 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=67.4
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
...|.|+|...+..+.+.|..++.+.-|++..++..|+++.+++++|.|+.+.+++|-.++.+.|+|.|.+..
T Consensus 19 ~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp CSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 4678999987556778999999999999999999999999999999999999999999999999999998875
No 105
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.14 E-value=1.9e-05 Score=56.62 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=62.1
Q ss_pred eEEEEEeeCC-EEEEEEEcCCCCHHHHHHHHHhhhCCCCC-ceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 70 SITIRVSTVS-KWHDISIKATSTFGELKMILSMVSGLEPR-EQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 70 ~I~I~Vk~g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVppe-~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.|++-+...+ ....+.|.++++|.+|-+.-..+.|||++ ..+|+|.|-.|+.++++++|++.|+|.|-++.
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4555555432 45789999999999999999999999999 99999999999999999999999999997764
No 106
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.12 E-value=2.9e-07 Score=81.25 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=4.9
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhhh
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKDM 147 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~~ 147 (167)
.+.|+|+|+..+..+.+.|.+++++..|++..++..|++++.++++|.|+.+.+++|.++++++|||+|.++..-..-++
T Consensus 19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMR 98 (360)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHH
Confidence 45788999876577788999999999999999999999999999999999999999999999999999999877666666
Q ss_pred hhhccc
Q 031040 148 KLHGLR 153 (167)
Q Consensus 148 k~~~~~ 153 (167)
.|+++.
T Consensus 99 ~Yl~l~ 104 (360)
T 3ix6_A 99 TYLDLL 104 (360)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 107
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.95 E-value=1.8e-05 Score=56.42 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=57.7
Q ss_pred EEEEEe---eCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC-----ceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 71 ITIRVS---TVSKWHDISIKATSTFGELKMILSMVSGLEPR-----EQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk---~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe-----~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
|.|++- +.++.+++.|+...|+.+|++.|.+..+++.. ..|+.-++..|.+++.|.+|+|.+||.|.++
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Leil 81 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEIL 81 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEEC
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEEC
Confidence 444544 46689999999999999999999999998762 3455668888999999999999999999763
No 108
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.87 E-value=0.0001 Score=54.14 Aligned_cols=73 Identities=10% Similarity=0.113 Sum_probs=66.9
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
..|.|+|+..+..+.+.|-.++-+.-|....+.+.|+++..-+++|.|..+.+++|-+++++.++|.|-++.-
T Consensus 20 ~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 20 RLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred CeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 4599999986677889999999999999999999999999999999999999999999999999999976643
No 109
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.83 E-value=2.3e-06 Score=74.25 Aligned_cols=74 Identities=22% Similarity=0.237 Sum_probs=0.0
Q ss_pred CceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecC
Q 031040 68 EGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~ 141 (167)
...|.|+|...+..+.+.|..++++.-|++..++..|+++.+++++|.|+.+.+++|-++++++|||+|.++..
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~ 101 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHRE 101 (389)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeec
Confidence 35688888875567789999999999999999999999999999999999999999999999999999988753
No 110
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.72 E-value=0.00019 Score=54.11 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=67.3
Q ss_pred CcceeeEecCC---ceeEEeecCCCCCCceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCe
Q 031040 44 SHEIKWELRPG---GMLVQKRESGCEGEGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGK 117 (167)
Q Consensus 44 ~~~~~we~rpg---gmlvq~r~~~~~~~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK 117 (167)
.++.+|+..|| |+.+.- +...+.++|.|+. .+..+.-....++||.+|..-|... +.++....|+ |=.|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~----d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk 92 (124)
T 1wj4_A 18 VDSEILEMPPEKADGVVEGI----DVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRR 92 (124)
T ss_dssp CCCCSCSCCCCCCCCCCCCC----CCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCC
T ss_pred cChhhhhcCCCCCCCccccc----CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCc
Confidence 35667998765 332221 1345666666665 3356778899999999999999887 8888888887 5577
Q ss_pred ec--C-CcchhhhcCCCCCCEEEEec
Q 031040 118 ER--E-DNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 118 ~L--d-D~~tL~~~GIkdgskL~Lv~ 140 (167)
.+ + .+.+|.++|+.+...|+|..
T Consensus 93 ~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 93 KLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCccCCCCCCHHHCCCCCceEEEEEE
Confidence 78 3 46899999999988887753
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.66 E-value=0.00016 Score=52.68 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=64.2
Q ss_pred EEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 72 TIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 72 ~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
.|.|-. +++.+.|.|.|+.|+.|+-+.-.+.+|+++++-.|.|++|.+|-+..+.-.||.++++|.|+...
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 555554 55788999999999999999999999999999999999999999999999999999999998753
No 112
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.51 E-value=0.00016 Score=55.54 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=54.3
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC-------------------------------------ceEEE
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPR-------------------------------------EQRLL 113 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe-------------------------------------~QKLi 113 (167)
++|+.-. +..+++.|+.+.||++++..|+...||++. .|+|-
T Consensus 14 LkV~llD-g~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 14 LKIRMLD-GTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEECTT-SCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred EEEEcCC-CCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 4444444 478899999999999999999999999955 45542
Q ss_pred E--cCeecCCcchhhhcCCCCCCEEEEe
Q 031040 114 F--KGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 114 f--kGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
. .+..|+++.+|.+.||.++++|.|=
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 2 2367888999999999999998763
No 113
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.26 E-value=0.0015 Score=45.33 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=56.1
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCeec---CCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGKER---EDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK~L---dD~~tL~~~GIkdgskL~Lv~ 140 (167)
.+..+|.|+. +|....-....++|+.+|..-|.. .+.++...+|+ |=.|.+ +.+.+|.++|+.+.++|+|-+
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 4555566664 335567788899999999999998 67888889988 446777 446899999999999998743
No 114
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.10 E-value=0.015 Score=41.40 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=43.7
Q ss_pred CCceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCe
Q 031040 67 GEGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGK 117 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK 117 (167)
+++.++|+|-+. -++.|.|++..++.+|..+|.++.+++++.-+|-|+-.
T Consensus 2 ~~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 2 SHMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp CSSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 345578888877 58899999999999999999999999999999999763
No 115
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.09 E-value=0.014 Score=40.19 Aligned_cols=60 Identities=18% Similarity=0.394 Sum_probs=46.1
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|+|+- +.....+++++..|+.||-+. .|+|++.--++.+|..+..+. +.+||+|.++.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 3555553 445667899999999998776 899999998888998876555 34589998874
No 116
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.07 E-value=0.082 Score=35.35 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=48.7
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.|+|+|-.......++++...|+.+|.+.| +++++.-.+..+|.....+. -|++||.|.++.
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 367777665556678888889999999986 67788777889999886554 589999998873
No 117
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.02 E-value=0.044 Score=44.24 Aligned_cols=58 Identities=9% Similarity=0.188 Sum_probs=47.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhCCCCC-ceEEE--E-cC--eecCC-cchhhhcCCCCCCEEEE
Q 031040 81 WHDISIKATSTFGELKMILSMVSGLEPR-EQRLL--F-KG--KERED-NEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TGVppe-~QKLi--f-kG--K~LdD-~~tL~~~GIkdgskL~L 138 (167)
.+.+.++..+||.+|++.+...++|+++ +-||- | .+ ..|+| +.+|++++|.++..|+|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~ill 205 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI 205 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEE
Confidence 3567889999999999999999999997 68884 3 23 24565 46999999999999975
No 118
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.00 E-value=0.053 Score=39.58 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=55.6
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCeecC---CcchhhhcCCCCCCEEEEec
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGKERE---DNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK~Ld---D~~tL~~~GIkdgskL~Lv~ 140 (167)
+..+|.|+. .+....-....++|+.+|.+-|....+.+.....|+ |--|.+. .+.+|.++|+.+...|++..
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 344555553 235677889999999999999999888887788886 4566775 36799999999998887764
No 119
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.98 E-value=0.053 Score=44.21 Aligned_cols=58 Identities=9% Similarity=0.127 Sum_probs=47.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhCCCCC-ceEEEE-c----CeecCC-cchhhhcCCCCCCEEEE
Q 031040 81 WHDISIKATSTFGELKMILSMVSGLEPR-EQRLLF-K----GKERED-NEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TGVppe-~QKLif-k----GK~LdD-~~tL~~~GIkdgskL~L 138 (167)
.+.+.++..+||.+|++.+...++|+++ +-||-. . -..|.| +.+|+++++.++..|+|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~ill 217 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVI 217 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEE
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEE
Confidence 3456779999999999999999999997 688864 2 234665 58999999999999965
No 120
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=95.89 E-value=0.057 Score=46.04 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=56.9
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhh----CCCCCceEEEE------cCeecCCcchhhhcCCCCCCEEEEe
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVS----GLEPREQRLLF------KGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~T----GVppe~QKLif------kGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
+.++|.-.+.+..+..+|++||.|.-..|.++. -.++++--|+. +|.-|+++.+|+.|++++++.|..-
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 444444447888999999999999999997765 34788889988 6677999999999999999998765
No 121
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.37 E-value=0.077 Score=38.09 Aligned_cols=50 Identities=4% Similarity=0.023 Sum_probs=42.3
Q ss_pred CCceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCc-eEEEEcC
Q 031040 67 GEGSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPRE-QRLLFKG 116 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~-QKLifkG 116 (167)
++..|+|++.+.+....+.++++.++.+|.++|.+.+++++.+ ..|-|..
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 3567899999988888999999999999999999999998655 5566664
No 122
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=95.36 E-value=0.039 Score=39.68 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=50.9
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE-EcC----eecCCcchhhhcCCCCCCEEEEe
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL-FKG----KEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi-fkG----K~LdD~~tL~~~GIkdgskL~Lv 139 (167)
..|+|+|-+....+.|-|+++.++.+|+.+|..+..+. ++.|+ |++ .++.+++.|+.+ |+...+|+|.
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde~~g~~i~sD~dl~~a-iqrn~KL~l~ 83 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFDGSGEEIKTDSQVSNI-IQAKLKISVH 83 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSSSCCSCCCSHHHHHHH-HHTTCCEEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCCCCCCcccCHHHHHHH-HHhcCeeEEe
Confidence 45888888877889999999999999999999999994 44444 433 345555566655 6777777654
No 123
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.09 E-value=0.14 Score=37.16 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=54.2
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE--EcCeecC--CcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLL--FKGKERE--DNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi--fkGK~Ld--D~~tL~~~GIkdgskL~Lv~ 140 (167)
.+.++|.|+. .|..+.-....++||.+|..-|... +..+...+|+ |=.|.+. .+.+|.++|+.+...|+|-.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 3456666664 3355677888999999999999965 5667778876 4466775 46899999999998887653
No 124
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.26 E-value=0.1 Score=39.08 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=51.1
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhh-hCCCCCceEEE--EcCeecCC-cchhhhcCCCCCCEE
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMV-SGLEPREQRLL--FKGKERED-NEFLHMVGVRDKDKV 136 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~-TGVppe~QKLi--fkGK~LdD-~~tL~~~GIkdgskL 136 (167)
..|+|++-+|. ...-....++||.+|.+-|... .+.+.....|+ |--|.++| +.+|.++|+.+...|
T Consensus 53 t~IqIRlpdG~-rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 53 TNIQIRLADGG-RLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCEEEEETTTT-EEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEEECCCCC-EEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 45666666664 5677899999999999999985 45666777877 45678865 589999999985444
No 125
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.90 E-value=0.16 Score=36.74 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=58.9
Q ss_pred CCceEEEEEeeCC-EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc---CeecCCcchhhhcCCCCCCEEEEe
Q 031040 67 GEGSITIRVSTVS-KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK---GKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 67 ~~p~I~I~Vk~g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk---GK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
++.++++-|-+.. +...+.|+|..++.+|--.|.++..+.|+.-.|+-. +.+|+=+.+|.+|||++ |+.+
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~ 80 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAM 80 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hhee
Confidence 3457888888844 888899999999999999999999999999988743 44688889999999998 5554
No 126
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.58 E-value=0.5 Score=35.27 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=50.2
Q ss_pred ceEEEEEee---CCEEEEEEEcCCCCHHHHHHHHHhh--hCCC------CCceEEEEc----CeecCCc-----------
Q 031040 69 GSITIRVST---VSKWHDISIKATSTFGELKMILSMV--SGLE------PREQRLLFK----GKEREDN----------- 122 (167)
Q Consensus 69 p~I~I~Vk~---g~~~~~VeV~~t~TV~eLK~~Ia~~--TGVp------pe~QKLifk----GK~LdD~----------- 122 (167)
.+++++|.. +...+.+.|-.-+||.++|++|-+. -|+| +++.-|-++ |+.|.|.
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 456666653 2356788898999999999999874 2333 456667663 3455442
Q ss_pred --chhhhcCCCCCCEEEEec
Q 031040 123 --EFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 123 --~tL~~~GIkdgskL~Lv~ 140 (167)
.||..|+|.||++|-|+.
T Consensus 90 rLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 90 RVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp CCCBHHHHTCCTTCEEEEEE
T ss_pred EecchhhcCCCCCCEEEEEe
Confidence 379999999999998863
No 127
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=93.34 E-value=0.27 Score=41.18 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=46.4
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCe-ec-CCcchhhhcC
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGK-ER-EDNEFLHMVG 129 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK-~L-dD~~tL~~~G 129 (167)
+.+........+.+.+.+..|+.+|++.++..|+++++.|.|+|.+. .. +.......|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 34555556688899999999999999999999999999999999984 33 3334444443
No 128
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.73 E-value=0.41 Score=31.93 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=42.1
Q ss_pred EEEEEee-CC-EEEEEEEcCCCCHHHHHHHHHhhhCCCC--CceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVST-VS-KWHDISIKATSTFGELKMILSMVSGLEP--REQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~-g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVpp--e~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|.|+|++ +. ..-++++ ...|+.+|.+.|....++.. +.-.+..+|....+ .+.-|++||.|.++-
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC
Confidence 3566665 22 2134677 66899999999987544332 34455667776443 234699999998873
No 129
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=92.57 E-value=0.11 Score=39.24 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=29.5
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
.+.|..++||.+|+.+|+..+|+|+++|+|-+
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 56788999999999999999999999999964
No 130
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.49 E-value=1.1 Score=31.38 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=40.0
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhC-C----------CCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 80 KWHDISIKATSTFGELKMILSMVSG-L----------EPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TG-V----------ppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
....++++...||.+|.+.|..... + ....-.+..+|...+. +.-|++||.|.++-
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFP 93 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEES
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEEC
Confidence 4567888888999999999987631 1 1233456778877653 45699999998763
No 131
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.15 E-value=0.94 Score=35.03 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=51.0
Q ss_pred ceEEEEEeeC-------CEEEEEEEcCCCCHHHHHHHHHhh--hCCC------CCceEEEE----cCee-cCCc------
Q 031040 69 GSITIRVSTV-------SKWHDISIKATSTFGELKMILSMV--SGLE------PREQRLLF----KGKE-REDN------ 122 (167)
Q Consensus 69 p~I~I~Vk~g-------~~~~~VeV~~t~TV~eLK~~Ia~~--TGVp------pe~QKLif----kGK~-LdD~------ 122 (167)
.+++|+|... .+.+.|.|-.-+||.++|++|-+. -|+| +++.-|-+ .|+. |.|.
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence 4566666432 256788999999999999999875 4443 34555544 2332 4442
Q ss_pred -------chhhhcCCCCCCEEEEecC
Q 031040 123 -------EFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 123 -------~tL~~~GIkdgskL~Lv~~ 141 (167)
.||..|+|.||++|.|+..
T Consensus 103 ~~~wkrLNTL~HY~V~Dga~l~l~~~ 128 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDGATVALVPC 128 (138)
T ss_dssp ETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred cCCceeecchhccCCCCCCEEEEEEC
Confidence 2899999999999999854
No 132
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=91.02 E-value=1.2 Score=32.62 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=42.3
Q ss_pred ceEEEEEee--------CC-EEEEEEEcC---CCCHHHHHHHHHhhhCCCCCceEEEEc-Cee------c---CCcchhh
Q 031040 69 GSITIRVST--------VS-KWHDISIKA---TSTFGELKMILSMVSGLEPREQRLLFK-GKE------R---EDNEFLH 126 (167)
Q Consensus 69 p~I~I~Vk~--------g~-~~~~VeV~~---t~TV~eLK~~Ia~~TGVppe~QKLifk-GK~------L---dD~~tL~ 126 (167)
++|+|+|+. ++ +.|+|+++. ..||.+|.+.|.+.. |....+|+.. |+. + .|...|.
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 446677663 33 367899884 369999999998775 2222233222 221 1 1223443
Q ss_pred --hcCCCCCCEEEEec
Q 031040 127 --MVGVRDKDKVLLLE 140 (167)
Q Consensus 127 --~~GIkdgskL~Lv~ 140 (167)
++-|+|||.|.++-
T Consensus 88 gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 88 ELDYQLQDQDSILFIS 103 (114)
T ss_dssp TTTCBCCSSEEEEEEE
T ss_pred CcCcCCCCCCEEEEeC
Confidence 36799999998864
No 133
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=90.47 E-value=2.2 Score=32.55 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=45.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhh--hCCC------CCceEEEEc-C---ee-cCCc-------------chhhhcCCCCC
Q 031040 80 KWHDISIKATSTFGELKMILSMV--SGLE------PREQRLLFK-G---KE-REDN-------------EFLHMVGVRDK 133 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~--TGVp------pe~QKLifk-G---K~-LdD~-------------~tL~~~GIkdg 133 (167)
..+.|.|-.-+||.++|++|-+. -|+| +++.-|-++ | .. |.|. .||..|+|.||
T Consensus 17 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dg 96 (127)
T 3h6n_A 17 DSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEG 96 (127)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTT
T ss_pred CceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCC
Confidence 55778888999999999999875 2333 567777762 3 32 5442 37999999999
Q ss_pred CEEEEec
Q 031040 134 DKVLLLE 140 (167)
Q Consensus 134 skL~Lv~ 140 (167)
++|-|+.
T Consensus 97 atv~l~~ 103 (127)
T 3h6n_A 97 ASLAMSL 103 (127)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9998874
No 134
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=90.46 E-value=0.93 Score=31.98 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=43.6
Q ss_pred EEeeCCEEEEEEEcCC-CCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 74 RVSTVSKWHDISIKAT-STFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 74 ~Vk~g~~~~~VeV~~t-~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++.-+++ .++++.. .|+.+|.+.| +++++.-.+..+|..+..+ ...+.-|++||.|.++.
T Consensus 22 ~I~vNGe--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 22 MLQLNGK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp CEEETTE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred EEEECCE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 3444454 4566776 8999998886 6778777788899877543 44455699999998873
No 135
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=90.28 E-value=2.9 Score=29.20 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=36.0
Q ss_pred CEEEEEEEc--CCCCHHHHHHHHHhhhC-CCCCc------e------EEEEcCeecCCcchh--hhcCCCCCCEEEEe
Q 031040 79 SKWHDISIK--ATSTFGELKMILSMVSG-LEPRE------Q------RLLFKGKEREDNEFL--HMVGVRDKDKVLLL 139 (167)
Q Consensus 79 ~~~~~VeV~--~t~TV~eLK~~Ia~~TG-Vppe~------Q------KLifkGK~LdD~~tL--~~~GIkdgskL~Lv 139 (167)
...++++++ +..||++|.+.|.+... ..++. . .++.+|... ..+ .++-|++||.|.++
T Consensus 19 ~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~---~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 19 QRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDW---ELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp CCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEG---GGGTGGGCBCCTTCEEEEE
T ss_pred CcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEc---cccCCCCcCcCCCCEEEEE
Confidence 356677877 67899999999987763 21111 1 133444321 122 24569999999876
No 136
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=89.13 E-value=2.7 Score=30.16 Aligned_cols=68 Identities=6% Similarity=0.080 Sum_probs=50.3
Q ss_pred CceEEEEEee--CC--EEEEEEEcCCCCHHHHHHHHHh---hhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVST--VS--KWHDISIKATSTFGELKMILSM---VSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~--g~--~~~~VeV~~t~TV~eLK~~Ia~---~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
-.+|.|.|.| .. ....++++..+||.++-+.+.- ...|......+..+|+... .+.-+++||.|.+..
T Consensus 10 ~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 10 LNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred cceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 4578888887 33 4456788999999999888753 2345555688889998887 334499999999874
No 137
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.89 E-value=2 Score=32.18 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=50.1
Q ss_pred ceEEEEEeeC----CEEEEEEEcCCCCHHHHHHHHHhh--hCCC------CCceEEEE-cC---e-ecCCc---------
Q 031040 69 GSITIRVSTV----SKWHDISIKATSTFGELKMILSMV--SGLE------PREQRLLF-KG---K-EREDN--------- 122 (167)
Q Consensus 69 p~I~I~Vk~g----~~~~~VeV~~t~TV~eLK~~Ia~~--TGVp------pe~QKLif-kG---K-~LdD~--------- 122 (167)
.+++|+|... ...+.|.|-.-+||.++|++|-+. -|.| +++.-|-+ .| + .|.|.
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 4567777641 245778888999999999999864 3333 45666765 23 2 24331
Q ss_pred ----chhhhcCCCCCCEEEEec
Q 031040 123 ----EFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 123 ----~tL~~~GIkdgskL~Lv~ 140 (167)
.||..|+|.||++|-|+.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~ 113 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVS 113 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEE
T ss_pred ceEeccccccCCCCCCEEEEEe
Confidence 369999999999998874
No 138
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=88.76 E-value=2.1 Score=29.05 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=40.9
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhC-CC-----C-----CceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSG-LE-----P-----REQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TG-Vp-----p-----e~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+.....++++...||.+|.+.|..... +. . ..-.+..+|+.... +.-|++||.|.++-
T Consensus 16 g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 16 GSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp TCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 434567888888999999999987642 11 0 12467778887764 34599999998873
No 139
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=88.72 E-value=1 Score=29.83 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhC-----CCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 81 WHDISIKATSTFGELKMILSMVSG-----LEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TG-----Vppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
..+++ ....|+.+|.+.|..... ++...-.+..+|..... +.-|++||.|.++-
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC
Confidence 44555 567899999999985521 23334467788887653 34689999998873
No 140
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=88.62 E-value=0.71 Score=30.11 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=39.6
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.++++...|+.+|.+.| +++++.-.+..+|...... ...+.-+++||.|.++.
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 35667789999999987 5777777778888876532 33445699999998773
No 141
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=88.60 E-value=1 Score=29.25 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=39.5
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+++. +++ ...|+.+|.+.| +++++.-.+..+|.....+ ...+.-+++||.|.++.
T Consensus 5 Ng~~--~~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 5 NGEP--RPL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTEE--ECC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred CCEE--EEc-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 3444 455 678999999887 5677777788888876543 33344699999998874
No 142
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=87.94 E-value=4.2 Score=30.94 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhh-h---CCCC----CceEEEE-cC---eecCC----------c----chhhhcCCCCC
Q 031040 80 KWHDISIKATSTFGELKMILSMV-S---GLEP----REQRLLF-KG---KERED----------N----EFLHMVGVRDK 133 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~-T---GVpp----e~QKLif-kG---K~LdD----------~----~tL~~~GIkdg 133 (167)
+.++|.|-.-+||.++|++|-+. . |+|- ++.-|-+ .| ..|.| . .||..|+|.||
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56788888999999999998764 2 6653 4455544 12 12222 1 36888999999
Q ss_pred CEEEEec
Q 031040 134 DKVLLLE 140 (167)
Q Consensus 134 skL~Lv~ 140 (167)
++|-|+.
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998764
No 143
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=87.89 E-value=1 Score=32.87 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=37.2
Q ss_pred eEEEEEeeC--------CEEEEEEEcCCCCHHHHHHHHHhhhCCCCCc-----eEEEEcC
Q 031040 70 SITIRVSTV--------SKWHDISIKATSTFGELKMILSMVSGLEPRE-----QRLLFKG 116 (167)
Q Consensus 70 ~I~I~Vk~g--------~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~-----QKLifkG 116 (167)
.|+|+|.++ ...+.|-|+++.++.+|..+|..++++++.+ .+|-|+.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 478888876 5578899999999999999999999876333 3566654
No 144
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=87.58 E-value=0.53 Score=44.05 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=44.9
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCee-cCCcchhhhc
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKE-REDNEFLHMV 128 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~-LdD~~tL~~~ 128 (167)
.+......+.+.+.+.++.|+.+|+..|+..||++++.|-+++.... ++.......|
T Consensus 314 ~~f~~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 314 SVMNMVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp ECCCSSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 44444445777899999999999999999999999999999997654 4555455554
No 145
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=86.08 E-value=2 Score=29.01 Aligned_cols=55 Identities=7% Similarity=-0.014 Sum_probs=41.8
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 78 VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 78 g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+++.+ ++ ...|+.+|-+. .+++++.--+.++|..+.. ...++.-+++||.|.++.
T Consensus 6 NG~~~--e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 6 NGEQR--EV-QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp TTEEE--CC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEEC
T ss_pred CCEEE--Ec-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEc
Confidence 34544 45 56899999776 5888988888899987753 456677899999998874
No 146
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=85.35 E-value=0.84 Score=33.09 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=42.3
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhCCCCC-----------ceEEEEcC-eecCC------cchhhhcCCCCCCEEEEecCC
Q 031040 81 WHDISIKATSTFGELKMILSMVSGLEPR-----------EQRLLFKG-KERED------NEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TGVppe-----------~QKLifkG-K~LdD------~~tL~~~GIkdgskL~Lv~~p 142 (167)
...++|+++.|..+|-+.|.+...+.-. ...|++.+ ..|+. +.+|.++|+.+|+-|++. ||
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt-D~ 84 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA-DV 84 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE-CT
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE-CC
Confidence 3568999999999999999985433222 34444443 22322 345899999999999875 44
Q ss_pred c
Q 031040 143 A 143 (167)
Q Consensus 143 ~ 143 (167)
+
T Consensus 85 ~ 85 (98)
T 1y8x_B 85 T 85 (98)
T ss_dssp T
T ss_pred C
Confidence 3
No 147
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.92 E-value=1.8 Score=31.13 Aligned_cols=66 Identities=23% Similarity=0.302 Sum_probs=46.5
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE--cCeecCCcchhhhcCCCCCCEEEEec
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF--KGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif--kGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
-++|.+..++...-|-+ .+..||+.+..+.++++.+.-.|.. .|-+++|++++..+. ++..++++.
T Consensus 11 pfkV~~~~Rs~k~GV~A-~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp--~nT~lmvL~ 78 (91)
T 2eel_A 11 PFRVSNHDRSSRRGVMA-SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG--DNTHFMILE 78 (91)
T ss_dssp EEEEECTTSCCCEEEEE-SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC--SSEEEEEEE
T ss_pred CEEEecCCCCeEEeEEc-CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC--CCCEEEEEc
Confidence 45555544333344433 3899999999999999866666654 699999999988775 666666654
No 148
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=84.58 E-value=1 Score=29.63 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=39.0
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCce--EEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQ--RLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~Q--KLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
....++++...|+.+|.+.|..... ..+.. .+..+|+....+ .-+++||.|.++.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 3456777778899999999876631 01223 677899877643 4689999998863
No 149
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=83.73 E-value=0.91 Score=41.18 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=29.1
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEE
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLL 113 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi 113 (167)
.+.|..++|+.+||++|++.+|+|+++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 5788999999999999999999999999994
No 150
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=83.05 E-value=0.43 Score=32.24 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=37.5
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
.++++...|+.+|.+.| +++++.-.+..+|+..+.+ .-|++||.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 45677788999998876 4677777788999887654 469999998765
No 151
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=82.91 E-value=3.6 Score=28.87 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=40.6
Q ss_pred eEEEEEee--------CCEEEEEEEcCCCCHHHHHHHHHhhh-CCCCC---------ce-------EEEEcCeecCCcch
Q 031040 70 SITIRVST--------VSKWHDISIKATSTFGELKMILSMVS-GLEPR---------EQ-------RLLFKGKEREDNEF 124 (167)
Q Consensus 70 ~I~I~Vk~--------g~~~~~VeV~~t~TV~eLK~~Ia~~T-GVppe---------~Q-------KLifkGK~LdD~~t 124 (167)
+|+|+|++ +...+ +++ ..|+.+|.+.|.... ++... .- .+..+|........
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~--~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~ 79 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPEL--PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG 79 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEE--EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS
T ss_pred ceEEEEEEeHHHHHHhCCCeE--EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC
Confidence 45667764 22233 444 589999999998763 11111 12 57788876532222
Q ss_pred hhhcCCCCCCEEEEec
Q 031040 125 LHMVGVRDKDKVLLLE 140 (167)
Q Consensus 125 L~~~GIkdgskL~Lv~ 140 (167)
+ +.-|++||.|.++-
T Consensus 80 ~-~~~L~~gD~V~i~p 94 (99)
T 2l52_A 80 L-ETLLKDSDEIGILP 94 (99)
T ss_dssp T-TSCCCTTEEEEEEC
T ss_pred C-CCCCCCCCEEEEEC
Confidence 2 33589999998763
No 152
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=81.96 E-value=5.7 Score=26.54 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=37.4
Q ss_pred EEEEcCCCCHHHHHHHHHhhhC------C-----CCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSG------L-----EPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TG------V-----ppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
+++++...|+.+|.+.|..... + ....-.+..+|........ .+.-|++||.|.++-
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCCEEEEeC
Confidence 3566667899999999987641 1 1134467788876642222 233599999998863
No 153
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=81.87 E-value=12 Score=26.66 Aligned_cols=65 Identities=3% Similarity=-0.009 Sum_probs=51.7
Q ss_pred EeeCCEEEEEEEcCCCCHHHHHHHHHhh-hC--CC--CCceEEEEcCee--cCCcchhhhcCCCCCCEEEEe
Q 031040 75 VSTVSKWHDISIKATSTFGELKMILSMV-SG--LE--PREQRLLFKGKE--REDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 75 Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~-TG--Vp--pe~QKLifkGK~--LdD~~tL~~~GIkdgskL~Lv 139 (167)
+....-.+-|.|+.++|..++-++++.- -| ++ |.-.++.++|.. +.++.++.+.||++-+.|-++
T Consensus 10 F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 10 FEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp ETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred eccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 3334467789999999999999998863 23 22 236788899998 999999999999999998765
No 154
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=81.32 E-value=6.4 Score=28.54 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=52.0
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE-------cCeecCCcch----hhhcCCCCCCEEEE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF-------KGKEREDNEF----LHMVGVRDKDKVLL 138 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif-------kGK~LdD~~t----L~~~GIkdgskL~L 138 (167)
.|+|+...+ .+..|.|++++|+.|+=++|.+..++..+.---|| --+.++|.+. |.+..+....+++.
T Consensus 11 vvkvf~~Dg-ssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 11 VVKVYSEDG-ACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEEETTS-CEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEEecCC-CEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 455555555 67799999999999999999999998865544433 2345677654 45556777788877
Q ss_pred ecCCc
Q 031040 139 LEDPA 143 (167)
Q Consensus 139 v~~p~ 143 (167)
.+.+.
T Consensus 90 ~kr~~ 94 (100)
T 1wgr_A 90 RKNFA 94 (100)
T ss_dssp CSCCS
T ss_pred ecchh
Confidence 76543
No 155
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=81.27 E-value=5.7 Score=28.53 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=51.3
Q ss_pred EEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 82 HDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 82 ~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
..-.++-+.++..||+.|+.+.|++-+.-.+...+..|+++.+|-+-+|+-.-.|.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3456777889999999999999999999999899999999999999999888888764
No 156
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=80.19 E-value=7.4 Score=36.68 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=50.0
Q ss_pred ceEEEEEeeC-------CEEEEEEEcCCCCHHHHHHHHHhh--hCCC------CCceEEEEc----Ce-ecCCc------
Q 031040 69 GSITIRVSTV-------SKWHDISIKATSTFGELKMILSMV--SGLE------PREQRLLFK----GK-EREDN------ 122 (167)
Q Consensus 69 p~I~I~Vk~g-------~~~~~VeV~~t~TV~eLK~~Ia~~--TGVp------pe~QKLifk----GK-~LdD~------ 122 (167)
.+++++|-.. .+.+.|.|-.-+||.++|++|-+. -|+| +++.-|-++ |. .|.|.
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 335 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 335 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCcccee
Confidence 4566776531 245778888999999999999864 3444 355566552 22 24443
Q ss_pred -------chhhhcCCCCCCEEEEec
Q 031040 123 -------EFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 123 -------~tL~~~GIkdgskL~Lv~ 140 (167)
.||..|+|+||++|.|+.
T Consensus 336 ~~~wkrLNTL~HY~V~dga~v~L~p 360 (644)
T 3hm6_X 336 QGLWRRLNTLQHYKVPDGATVALVP 360 (644)
T ss_dssp ETTEEECCBTTTTTCCTTCEEEEEE
T ss_pred cCcceeecchhhcCCCCCcEEEEEe
Confidence 379999999999998874
No 157
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=79.17 E-value=2.3 Score=29.10 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=41.1
Q ss_pred EEEEc--CCCCHHHHHHHHHhhhCCC-CCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIK--ATSTFGELKMILSMVSGLE-PREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~--~t~TV~eLK~~Ia~~TGVp-pe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.++++ ...|+.+|-+. .|++ ++.--+.++|..+.. ...++.-|++||.|.++.
T Consensus 9 ~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECC
T ss_pred EEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEe
Confidence 35566 67899999876 4788 888888899987754 456667799999998874
No 158
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=78.79 E-value=4.4 Score=36.70 Aligned_cols=72 Identities=10% Similarity=0.160 Sum_probs=57.0
Q ss_pred CceEEEEEee---CCEEE----EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcC------eecC-Ccchhhhc--CCC
Q 031040 68 EGSITIRVST---VSKWH----DISIKATSTFGELKMILSMVSGLEPREQRLLFKG------KERE-DNEFLHMV--GVR 131 (167)
Q Consensus 68 ~p~I~I~Vk~---g~~~~----~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkG------K~Ld-D~~tL~~~--GIk 131 (167)
...|.|++|+ ..++. .+.|+.+.+|.+|-..|-+..|+|++.--.+|.- -.|+ ...||..+ .|.
T Consensus 128 ~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~ 207 (530)
T 2ylm_A 128 DHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELM 207 (530)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCC
T ss_pred CCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhccc
Confidence 3468999996 22332 2679999999999999999999999988888852 2356 57899999 999
Q ss_pred CCCEEEEe
Q 031040 132 DKDKVLLL 139 (167)
Q Consensus 132 dgskL~Lv 139 (167)
+||.|..=
T Consensus 208 ~GdII~fQ 215 (530)
T 2ylm_A 208 DGDIIVFQ 215 (530)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99998653
No 159
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=78.29 E-value=8.8 Score=28.26 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=41.1
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER 119 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L 119 (167)
..++|++.+++++..|.++..-++.||.+++.+.+|- ..-|.|-..++
T Consensus 7 ~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq---~ldL~y~n~El 54 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQ---SMDLHYTNNEL 54 (103)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSS---CEEEEECSSSS
T ss_pred CcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCC---eeeEEEecceE
Confidence 3578888889999999999999999999999999996 46677876654
No 160
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=78.10 E-value=11 Score=35.39 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=50.3
Q ss_pred ceEEEEEee----CCEEEEEEEcCCCCHHHHHHHHHhh--hCC------CCCceEEEEc----Ce-ecCCc---------
Q 031040 69 GSITIRVST----VSKWHDISIKATSTFGELKMILSMV--SGL------EPREQRLLFK----GK-EREDN--------- 122 (167)
Q Consensus 69 p~I~I~Vk~----g~~~~~VeV~~t~TV~eLK~~Ia~~--TGV------ppe~QKLifk----GK-~LdD~--------- 122 (167)
.+++++|.. +.+.+.|.|-.-+||.++|++|-+. -|+ .+++.-|-++ |+ .|.|.
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 456777763 1256788899999999999999875 233 3466666552 22 23331
Q ss_pred ----chhhhcCCCCCCEEEEec
Q 031040 123 ----EFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 123 ----~tL~~~GIkdgskL~Lv~ 140 (167)
.||..|+|+||++|-|+.
T Consensus 312 wkrLNTL~HY~V~Dga~v~L~p 333 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDGSLVALVP 333 (627)
T ss_dssp EEECCBTTTTTCCTTCEEEEEE
T ss_pred eeEecchhhcCCCCCceEEEEe
Confidence 379999999999999875
No 161
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=77.97 E-value=4.9 Score=30.60 Aligned_cols=58 Identities=17% Similarity=0.325 Sum_probs=41.0
Q ss_pred EEEEcC----CCCHHHHHHHHHhhhCCCC-------CceEEEEcCeecCC--cchhhhcCCCCCCEEEEecC
Q 031040 83 DISIKA----TSTFGELKMILSMVSGLEP-------REQRLLFKGKERED--NEFLHMVGVRDKDKVLLLED 141 (167)
Q Consensus 83 ~VeV~~----t~TV~eLK~~Ia~~TGVpp-------e~QKLifkGK~LdD--~~tL~~~GIkdgskL~Lv~~ 141 (167)
.+.|++ .+|.++|-+.|....|.+. .+++|+|.- -.+| +.+|+++||++|+.|.++-.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~-DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDY-DFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEET-TBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCC-CccccccCcHHHcCcCCCcEEEEEcc
Confidence 456653 5799999998988888763 134444433 1233 36899999999999988854
No 162
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=76.97 E-value=11 Score=27.54 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=35.6
Q ss_pred CceEEEEEeeCCEEEEEEEcC--CCCHHHHHHHHHhhhCCCCC
Q 031040 68 EGSITIRVSTVSKWHDISIKA--TSTFGELKMILSMVSGLEPR 108 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~--t~TV~eLK~~Ia~~TGVppe 108 (167)
.|++.++|-+.+..+.+.|+. +.|..+|..+|...+|++.-
T Consensus 12 ~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~ 54 (101)
T 1wj6_A 12 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTI 54 (101)
T ss_dssp CSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSB
T ss_pred CccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCce
Confidence 578999999988888888855 99999999999999999743
No 163
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=75.75 E-value=12 Score=27.31 Aligned_cols=66 Identities=12% Similarity=0.201 Sum_probs=45.4
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC--ceEEE--EcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPR--EQRLL--FKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe--~QKLi--fkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
-++|.........-|-+. |..||+.+....++++.. .-.|. ..|-+++|++++..+. ++..++++.
T Consensus 20 PfkV~~~~~r~k~GV~A~-SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~ 89 (100)
T 1f2r_I 20 PCLLRRNHSRDQHGVAAS-SLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP--SNTKFVALA 89 (100)
T ss_dssp EEEEEETTEEEEEEEEES-SHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC--SCCEEEEEC
T ss_pred CEEEeeCCCccEEeEEcC-CHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC--CCCEEEEEc
Confidence 455653222224455444 899999999999999763 34443 3799999999988765 777777665
No 164
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=75.61 E-value=19 Score=25.49 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=48.2
Q ss_pred eEEEEEeeCCEEEEEEEc-CCCCHHHHHHHHHh----hhCCCCCceEEE----E-cCeecCCcchhhhcCCCCCCEEEEe
Q 031040 70 SITIRVSTVSKWHDISIK-ATSTFGELKMILSM----VSGLEPREQRLL----F-KGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~-~t~TV~eLK~~Ia~----~TGVppe~QKLi----f-kGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
.|+|+|..|..++.|... .+.||.+|-++-.. ..+-.++.-..+ + .|..|+.++.|.+. +.|.+.|.-+
T Consensus 2 ~MKvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 2 EFKVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp CEEEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred ccEEEEEECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 479999999888888774 46699999665443 245444332223 4 67788888888888 7788887543
No 165
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=75.54 E-value=11 Score=26.86 Aligned_cols=63 Identities=10% Similarity=0.280 Sum_probs=46.2
Q ss_pred CceEEEEEeeCCEEEEEEEcC--CCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchh
Q 031040 68 EGSITIRVSTVSKWHDISIKA--TSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIK 145 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~--t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~ 145 (167)
.+++.++|-+.+..+.+.|+. +.|..+|..++...+|++. ..|-|-. .|+|.|.+.-.+...
T Consensus 4 ~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~--~~ikY~D--------------EenD~v~i~Sq~E~e 67 (87)
T 2bkf_A 4 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT--IQIKYLD--------------EENEEVSINSQGEYE 67 (87)
T ss_dssp CCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS--EEEEEEC--------------TTSCEEEECSHHHHH
T ss_pred CceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc--eEEEEEc--------------CCCCEEEEecHHHHH
Confidence 478899999988889888865 9999999999999999973 2333322 256777666544444
Q ss_pred h
Q 031040 146 D 146 (167)
Q Consensus 146 ~ 146 (167)
|
T Consensus 68 E 68 (87)
T 2bkf_A 68 E 68 (87)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=75.48 E-value=11 Score=26.74 Aligned_cols=49 Identities=12% Similarity=0.212 Sum_probs=40.8
Q ss_pred CceEEEEEeeCCEEEEEEEcC--CCCHHHHHHHHHhhhCCCCCceEEEEcC
Q 031040 68 EGSITIRVSTVSKWHDISIKA--TSTFGELKMILSMVSGLEPREQRLLFKG 116 (167)
Q Consensus 68 ~p~I~I~Vk~g~~~~~VeV~~--t~TV~eLK~~Ia~~TGVppe~QKLifkG 116 (167)
...+.|+.+++.+..-+.+++ ..++.+|..+|+....++...-.|.|..
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 356899999998777777764 5899999999999999988888888864
No 167
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=74.58 E-value=22 Score=28.60 Aligned_cols=67 Identities=24% Similarity=0.211 Sum_probs=46.2
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCc-eEEEE---cCe--ecCCcchhhhcCCCCCCEEE
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPRE-QRLLF---KGK--EREDNEFLHMVGVRDKDKVL 137 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~-QKLif---kGK--~LdD~~tL~~~GIkdgskL~ 137 (167)
|.|+|..-..++.+.|++.+|+.||-+.|....|+...+ -=|.| +|. .|+.+..|...+++.+..+.
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~ 74 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLL 74 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEE
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEE
Confidence 556666533467899999999999999999999997644 23443 232 35666777776665554443
No 168
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=72.81 E-value=3.8 Score=29.86 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=34.6
Q ss_pred EEEEEEEcC----CCCHHHHHHHHHhhhCCCCCceEEEEc-C--e------ec---CCcchhh--hcCCCCCCEEEEec
Q 031040 80 KWHDISIKA----TSTFGELKMILSMVSGLEPREQRLLFK-G--K------ER---EDNEFLH--MVGVRDKDKVLLLE 140 (167)
Q Consensus 80 ~~~~VeV~~----t~TV~eLK~~Ia~~TGVppe~QKLifk-G--K------~L---dD~~tL~--~~GIkdgskL~Lv~ 140 (167)
+.+.++++. ..||.+|-+.|.+.. +...-.|+.. | . .| .|...|. +|-|+|||.|.++-
T Consensus 21 ~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 21 KQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp SCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred CeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 356778773 359999998888765 2223333212 2 1 12 2333444 36799999987753
No 169
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=72.14 E-value=18 Score=24.42 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=36.5
Q ss_pred EEEEcCCCCHHHHHHHHHhhhC-C-----C-------CCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSG-L-----E-------PREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TG-V-----p-------pe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++++ +..|+++|.+.|..... + . ...-.++.+|....+..-+ +.-|++||.|.++-
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILP 88 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEE
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEEC
Confidence 4664 45799999999987642 0 1 0124566788766543333 34599999998873
No 170
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=71.43 E-value=7.1 Score=27.74 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=35.9
Q ss_pred CCceEEEEEeeCCEEEEEEEc-CCCCHHHHHHHHHhhhCCCCCceEE-EEc
Q 031040 67 GEGSITIRVSTVSKWHDISIK-ATSTFGELKMILSMVSGLEPREQRL-LFK 115 (167)
Q Consensus 67 ~~p~I~I~Vk~g~~~~~VeV~-~t~TV~eLK~~Ia~~TGVppe~QKL-ifk 115 (167)
.+..|.-+++.......|.++ ...+|.|||+.|....++-..+--| +|+
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~n 55 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITN 55 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeC
Confidence 455677777776677788888 4679999999999987776544444 454
No 171
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=67.41 E-value=16 Score=30.69 Aligned_cols=71 Identities=17% Similarity=0.086 Sum_probs=51.3
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc-------CeecCCcchh----hhcCCCCCCEEEEe
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK-------GKEREDNEFL----HMVGVRDKDKVLLL 139 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk-------GK~LdD~~tL----~~~GIkdgskL~Lv 139 (167)
|+|++..+ .+..|.|++++|..||=+.|+...++....--.+|- -+.|.|.+.| .+.......++++.
T Consensus 34 vkv~~~D~-ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~ 112 (281)
T 4gmv_A 34 IRVHMSDD-SSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFM 112 (281)
T ss_dssp EEEEETTS-CEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEE
T ss_pred EEEEecCC-CEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEE
Confidence 45555555 688999999999999999999999887666555552 2556776654 34466677888877
Q ss_pred cCC
Q 031040 140 EDP 142 (167)
Q Consensus 140 ~~p 142 (167)
..+
T Consensus 113 ~~~ 115 (281)
T 4gmv_A 113 ERI 115 (281)
T ss_dssp CCH
T ss_pred ecc
Confidence 653
No 172
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=66.92 E-value=20 Score=26.99 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=54.9
Q ss_pred eEEEEEeeCC-----EEEEEEEcCCCCHHHHHHHHH-hhhCCCCCc-------eEEEEcCeec--CCcchhhhcCCCCCC
Q 031040 70 SITIRVSTVS-----KWHDISIKATSTFGELKMILS-MVSGLEPRE-------QRLLFKGKER--EDNEFLHMVGVRDKD 134 (167)
Q Consensus 70 ~I~I~Vk~g~-----~~~~VeV~~t~TV~eLK~~Ia-~~TGVppe~-------QKLifkGK~L--dD~~tL~~~GIkdgs 134 (167)
...|.|-|.. .-+.+-|+|++++++|-+.+- ..++.+|+- -..+.+|++. +.+.+|.+.||.-+|
T Consensus 23 ~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs 102 (119)
T 3u52_E 23 MQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKS 102 (119)
T ss_dssp CEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTE
T ss_pred CEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchh
Confidence 4567777643 456789999999999986654 457766664 3567889887 566899999999999
Q ss_pred EEEEecCCc
Q 031040 135 KVLLLEDPA 143 (167)
Q Consensus 135 kL~Lv~~p~ 143 (167)
.|.+. +|.
T Consensus 103 ~lrf~-TPg 110 (119)
T 3u52_E 103 MLTVT-TPG 110 (119)
T ss_dssp EEEEE-CTT
T ss_pred eEEEe-CCC
Confidence 99876 443
No 173
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.42 E-value=18 Score=26.43 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=51.7
Q ss_pred CceEEEEEeeCC-EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE---EcCee--cCCcchhhhcCCCCCCEEEEec
Q 031040 68 EGSITIRVSTVS-KWHDISIKATSTFGELKMILSMVSGLEPREQRLL---FKGKE--REDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 68 ~p~I~I~Vk~g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi---fkGK~--LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
...|..+|-... ...++.+..+.|+.+++..+++..+...+++.|. ++|-. |++++.--.-.+.-...|++..
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~ 85 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR 85 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 345556666423 5667889999999999999999999988889986 56643 4555443334455677888764
No 174
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=63.80 E-value=62 Score=27.03 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=47.2
Q ss_pred eEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC-ceEEEEcC---------eecCCcchhhhcCCCCCCEEEE
Q 031040 70 SITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPR-EQRLLFKG---------KEREDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe-~QKLifkG---------K~LdD~~tL~~~GIkdgskL~L 138 (167)
.+.++|.. ++....+.|++.+|+.||-+.|....|+... .--|.+.. ..|+.+.+|..-++.+..++++
T Consensus 85 ~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 85 QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 35555654 4467889999999999999999999998753 33444422 2345555666666666667766
No 175
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=63.79 E-value=23 Score=29.18 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=45.6
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc-------CeecCCcchhhhc--CCCCCCEEEEec
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK-------GKEREDNEFLHMV--GVRDKDKVLLLE 140 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk-------GK~LdD~~tL~~~--GIkdgskL~Lv~ 140 (167)
.|+|.+..+ .+..|.|++++|+.||=++|.....+..+.--.+|- -+.|.|.+.+-+. ......++++..
T Consensus 10 ivkv~~~d~-ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~~~l~f~k 88 (256)
T 3hk0_A 10 DVKVFSEDG-TSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESKFLFRK 88 (256)
T ss_dssp EEEEEETTS-CEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSSCEEEEEE
T ss_pred EEEEEecCC-cEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHHHhccCCCceEEEec
Confidence 467776655 688999999999999999999988876655555553 3556666543322 234456777776
Q ss_pred CCc
Q 031040 141 DPA 143 (167)
Q Consensus 141 ~p~ 143 (167)
.|+
T Consensus 89 ~~~ 91 (256)
T 3hk0_A 89 NYA 91 (256)
T ss_dssp CTT
T ss_pred ccc
Confidence 543
No 176
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=61.91 E-value=37 Score=24.51 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=40.3
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER 119 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L 119 (167)
.++|++.+.++...|.++.--.+.||.+++...+|-+ .-|.|-..+|
T Consensus 4 dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~---ldl~y~nnEL 50 (94)
T 2jrh_A 4 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQP---LDLHYMNNEL 50 (94)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSS---EEEEEECSSC
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe---eeeEEeccee
Confidence 4778888888999999999999999999999999955 5677877665
No 177
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=61.57 E-value=5.6 Score=30.08 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=44.7
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE--cCeecCCcchhhhcCCCCCCEEEEec
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF--KGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif--kGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
-++|....++...-|-+. +..||+.+..+.+++. +.-.|.. .|-+++|++++..+. ++..+++++
T Consensus 37 PfKV~~~~Rs~k~GV~A~-SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~ 103 (122)
T 1d4b_A 37 PFRVCDHKRTIRKGLTAA-TRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLE--DDTCLMVLQ 103 (122)
T ss_dssp EEEEECSSSSCEEEEEEC-CSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSS--SCCCCCEEC
T ss_pred CEEEecCCCCeEEeEEcC-CHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCC--CCCEEEEec
Confidence 455554333333344333 7899999999999994 4445544 799999999988875 777776665
No 178
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=61.37 E-value=23 Score=27.31 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=37.3
Q ss_pred EEEEcCCCCHHHHHHHHHhhhC-CC---------CCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 83 DISIKATSTFGELKMILSMVSG-LE---------PREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TG-Vp---------pe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
.++++. .||.+|.+.|..... +. ...-.+..+|........+ +.-|++||.|.++-
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~-dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGL-STPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGG-GCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCC-ccCCCCCCEEEEEC
Confidence 456665 899999999986631 11 1234567788776553333 34599999998874
No 179
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=60.76 E-value=41 Score=23.73 Aligned_cols=63 Identities=8% Similarity=0.085 Sum_probs=49.9
Q ss_pred eCCEEEEEEEcCCCCHHHHHHHHHhh-hC--C--CC-CceEEEEcC--eecCCcchhhhcCCCCCCEEEEe
Q 031040 77 TVSKWHDISIKATSTFGELKMILSMV-SG--L--EP-REQRLLFKG--KEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 77 ~g~~~~~VeV~~t~TV~eLK~~Ia~~-TG--V--pp-e~QKLifkG--K~LdD~~tL~~~GIkdgskL~Lv 139 (167)
...-.+-|.|+.++|..++-++++.- -| + .| .-.++.++| ..+..+.|+.+.||++-+.|-+.
T Consensus 10 gDFV~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~ 80 (83)
T 2inc_C 10 RDFVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDII 80 (83)
T ss_dssp TCSBEEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEE
T ss_pred cccEEEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEE
Confidence 34467789999999999999998853 22 2 22 246778999 88999999999999999988664
No 180
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=59.33 E-value=9.1 Score=29.73 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=45.3
Q ss_pred EEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCC--CceEEEE--cCeecCCcchhhhcCCCCCCEEEEec
Q 031040 73 IRVSTVSKWHDISIKATSTFGELKMILSMVSGLEP--REQRLLF--KGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 73 I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp--e~QKLif--kGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
++|....++...-|-+ .+..||+.+....++++. +.-.|.. .|-+++|++++..+. ++..++++.
T Consensus 66 fKV~d~~Rs~KkGV~A-~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp--~nT~LmvL~ 134 (145)
T 1ibx_B 66 CLLRRNYSREQHGVAA-SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLP--SNTKFVALA 134 (145)
T ss_dssp CBCBCSSCCSBCCCCC-SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSC--SSCBEEEEC
T ss_pred EEEecCCCCeEEeEEc-CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCC--CCCEEEEEC
Confidence 4444333333333433 489999999999999976 3555543 699999999988875 777777765
No 181
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=55.16 E-value=9.8 Score=26.23 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhCCC-----CCceEEEEcC
Q 031040 81 WHDISIKATSTFGELKMILSMVSGLE-----PREQRLLFKG 116 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TGVp-----pe~QKLifkG 116 (167)
.+.|-|+++.++.+|..+|..++++. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 56789999999999999999999975 3556666655
No 182
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.42 E-value=51 Score=30.02 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=46.6
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCC-ceEEEEcC-----eecCCcchhhhcCCCCCCEEE
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPR-EQRLLFKG-----KEREDNEFLHMVGVRDKDKVL 137 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe-~QKLifkG-----K~LdD~~tL~~~GIkdgskL~ 137 (167)
.|.|+|..-..++.+.|++.+|+.+|-..|....||... -.=|.|.. ..|+.+.+|...+++.+..+.
T Consensus 4 ~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~ 77 (575)
T 2i1j_A 4 SMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQ 77 (575)
T ss_dssp EEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEE
T ss_pred eEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeE
Confidence 466666652236789999999999999999999999653 34454422 245666677776665555443
No 183
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=54.30 E-value=50 Score=24.42 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=40.3
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER 119 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L 119 (167)
..++|++.+.++...|+++.--.+.||.+++...+|-+ .-|.|-..+|
T Consensus 30 ~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~---ldl~y~nnEL 77 (111)
T 2c60_A 30 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQP---LDLHYMNNEL 77 (111)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSC---CEEEEECSSC
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe---eeeEEecceE
Confidence 35788888888999999999999999999999999965 4566766654
No 184
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=53.59 E-value=43 Score=24.43 Aligned_cols=47 Identities=9% Similarity=0.170 Sum_probs=39.6
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER 119 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L 119 (167)
.++|++.+.++...|++..--.+.||.+++...+|-+ .-|.|-..+|
T Consensus 20 dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afGq~---ldl~y~nnEL 66 (100)
T 2npt_B 20 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNNEL 66 (100)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHTSC---EEEEEEETTE
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe---eeeEEeccee
Confidence 4788888888999999999999999999999999955 5566766554
No 185
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=51.24 E-value=24 Score=26.11 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=34.2
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEEE-cCeecCCcchhhhc
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLLF-KGKEREDNEFLHMV 128 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif-kGK~LdD~~tL~~~ 128 (167)
.-|+.+.||++|...|-....++|++--.+| ++.....+.+++++
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 4589999999999999999999998855555 66644445555443
No 186
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=50.90 E-value=19 Score=29.55 Aligned_cols=71 Identities=7% Similarity=-0.171 Sum_probs=46.3
Q ss_pred CceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCc-eEEEEc---C--eecCCcchhhhcCCCCCCEEEE
Q 031040 68 EGSITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPRE-QRLLFK---G--KEREDNEFLHMVGVRDKDKVLL 138 (167)
Q Consensus 68 ~p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~-QKLifk---G--K~LdD~~tL~~~GIkdgskL~L 138 (167)
...+.++|.. ++....+.|++.+|+.||-..|....|+...+ .=|.|. | ..|+.+..|.+.......++.+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 3456777775 44788999999999999999999999988644 445443 2 2356666666554333344544
No 187
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=50.02 E-value=28 Score=22.01 Aligned_cols=60 Identities=10% Similarity=-0.073 Sum_probs=37.4
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
|+|++..| + .++++...|+.+|-+.|.... +..-.-...+|+..+-+ +-|++++.|.++.
T Consensus 3 i~i~~p~g-~--~~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 3 VMVFTPKG-E--IKRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp EEEECTTC-C--EEEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred EEEEcCCC-C--EEEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 44554444 3 367788899999988874322 12222334688766543 4577889988874
No 188
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=48.99 E-value=28 Score=28.36 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=47.5
Q ss_pred ceEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCc-eEEEE--cCe--ecCCcchhhhcCCCCCCEE
Q 031040 69 GSITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPRE-QRLLF--KGK--EREDNEFLHMVGVRDKDKV 136 (167)
Q Consensus 69 p~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~-QKLif--kGK--~LdD~~tL~~~GIkdgskL 136 (167)
..+.++|..-+.++.+.|++.+|+.||-+.|....|+...+ -=|.| +|. .|+.+..|.+.+++.+..+
T Consensus 21 ~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 21 KTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred CeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 45666666522267899999999999999999999998532 33444 332 3677777877766555544
No 189
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=47.42 E-value=38 Score=23.76 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=40.7
Q ss_pred ceEEEEEee-CC----EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE-cCeec-CCcchhh
Q 031040 69 GSITIRVST-VS----KWHDISIKATSTFGELKMILSMVSGLEPREQRLLF-KGKER-EDNEFLH 126 (167)
Q Consensus 69 p~I~I~Vk~-g~----~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif-kGK~L-dD~~tL~ 126 (167)
..|.|+++. +. ...-.-|+.+.||++|...|.....++|++--.+| +...+ ..+++++
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~ 68 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVG 68 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHH
T ss_pred ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHH
Confidence 456777775 22 22346799999999999999999999998877666 44433 3244443
No 190
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=47.34 E-value=47 Score=26.12 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=46.8
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEc-------CeecCCcch----hhhcCCCCCCEEEE
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFK-------GKEREDNEF----LHMVGVRDKDKVLL 138 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifk-------GK~LdD~~t----L~~~GIkdgskL~L 138 (167)
+.|+|-. ++.+..|.|+++.|..||-+.|...++++.+..--+|. -+.|.|.+. +..........+.+
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~v~~v~~~w~~~~~~~l~~ 114 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHENVVEVLSDWTRDTENKVLF 114 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchhHHHHHHhhccccccchhh
Confidence 3444443 44678899999999999999999999987765443331 134555432 33334555566666
Q ss_pred ecCCc
Q 031040 139 LEDPA 143 (167)
Q Consensus 139 v~~p~ 143 (167)
..++.
T Consensus 115 ~~~~~ 119 (291)
T 3tca_A 115 LEKEE 119 (291)
T ss_dssp EECTT
T ss_pred hhhhh
Confidence 65543
No 191
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=44.77 E-value=30 Score=25.47 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=32.9
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEEE-cCeecCCcchhhh
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLLF-KGKEREDNEFLHM 127 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif-kGK~LdD~~tL~~ 127 (167)
.-|+.+.||++|...|-....++|++--.+| ++.....+.++++
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 4489999999999999999999998766666 4433334455544
No 192
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=44.55 E-value=89 Score=22.79 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=49.6
Q ss_pred eEEEEEee--C--CEEEEEEEcCCCCHHHHHHHHHhhhCCCC--CceEEEEcCe---ecCCcchhhhcCCCCCCEEEEe
Q 031040 70 SITIRVST--V--SKWHDISIKATSTFGELKMILSMVSGLEP--REQRLLFKGK---EREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 70 ~I~I~Vk~--g--~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp--e~QKLifkGK---~LdD~~tL~~~GIkdgskL~Lv 139 (167)
+++|+|.. . .....+.|..+.-|+.|--+|-+...++- .+.-|-.--| .+.-..+|+.|||+..+.|+.-
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 46677776 3 25567888888999999999887776653 3333333222 3466789999999999998764
No 193
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=43.83 E-value=35 Score=26.33 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=26.3
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCC
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLE 106 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVp 106 (167)
+.|++.-+++.+++++++..|+.++-......+|..
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k 39 (166)
T 1n62_A 4 AHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAH 39 (166)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTSC
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHHcCCCCccc
Confidence 456676677899999999999999766533444443
No 194
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=43.50 E-value=27 Score=26.14 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=33.7
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec-CCcchhhhc
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER-EDNEFLHMV 128 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L-dD~~tL~~~ 128 (167)
.-|+.+.||++|...|-....++|++--.+|=+..+ ..+.+++++
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 458999999999999999999999987666643344 344555443
No 195
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=43.31 E-value=29 Score=26.00 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=35.2
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEE-EcCeecC-Ccchhhhc
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLL-FKGKERE-DNEFLHMV 128 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi-fkGK~Ld-D~~tL~~~ 128 (167)
.-|+.+.||++|...|-....++|++--.+ |-+..+. .+.+++++
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 468999999999999999999999887767 7776553 34455543
No 196
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=41.42 E-value=14 Score=27.51 Aligned_cols=70 Identities=13% Similarity=0.224 Sum_probs=47.5
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCC--CceEEEEcCe---ecCCcchhhhcCCCCCCEEEEe
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEP--REQRLLFKGK---EREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp--e~QKLifkGK---~LdD~~tL~~~GIkdgskL~Lv 139 (167)
+++|+|..-+....+.|..+.-|+.|--+|-+...++- .+.-|-.--| .+.-..+|+.|||+..+.|+.-
T Consensus 26 eL~V~V~d~~~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 26 ELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CEECCBTTTTBCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEEecCCccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 45666666445567888888999999999887766542 2222222111 2456689999999999988643
No 197
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=40.72 E-value=43 Score=25.80 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=26.0
Q ss_pred EEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCC
Q 031040 71 ITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLE 106 (167)
Q Consensus 71 I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVp 106 (167)
+.|++.-+++.+++++++..|+.++-......+|.+
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgltg~k 39 (163)
T 1ffv_A 4 KIITVNVNGKAQEKAVEPRTLLIHFLREELNLTGAH 39 (163)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTSC
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHhcCCCcccc
Confidence 456666667899999999999999766543444444
No 198
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=40.26 E-value=52 Score=30.45 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=41.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhhC--CCCC--------ceEEEEcCe--ec----C--CcchhhhcCCCCCCEEEEec
Q 031040 81 WHDISIKATSTFGELKMILSMVSG--LEPR--------EQRLLFKGK--ER----E--DNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 81 ~~~VeV~~t~TV~eLK~~Ia~~TG--Vppe--------~QKLifkGK--~L----d--D~~tL~~~GIkdgskL~Lv~ 140 (167)
...+.++++.|+.+|-+.|..... +... ..+++|... .| + -+.+|.++||++|+.|.+..
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 790 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 790 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEEC
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEc
Confidence 456788888999999999988633 4322 256777542 11 1 14679999999999997764
No 199
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=40.23 E-value=74 Score=28.17 Aligned_cols=44 Identities=23% Similarity=0.104 Sum_probs=34.2
Q ss_pred EEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCC--CceEEEE
Q 031040 71 ITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEP--REQRLLF 114 (167)
Q Consensus 71 I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp--e~QKLif 114 (167)
+.++|.. ++..+.+.|++.+|+.||-+.|+...|+.. +.--|++
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4555554 446788999999999999999999999984 4455554
No 200
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=38.57 E-value=58 Score=22.99 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=35.0
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE-EEcCeecC
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRL-LFKGKERE 120 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL-ifkGK~Ld 120 (167)
..+.+.|++.+|=-|+|+.|+..+++.+..-.- ...||...
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR 69 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKR 69 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceee
Confidence 468899999999999999999999999988655 57777553
No 201
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=37.59 E-value=43 Score=25.83 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.2
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHH
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKM 97 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~ 97 (167)
.+.|++.-+++.++++++++.|+.++-.
T Consensus 3 ~~~i~~~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 3 KITINLNLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp CEEEEEEETTEEEEEEECSSSBHHHHHH
T ss_pred cceEEEEECCEEEEEecCCCCCHHHHHH
Confidence 3567777778889999999999999754
No 202
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=35.76 E-value=41 Score=24.17 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=33.3
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec-CCcchhhhc
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER-EDNEFLHMV 128 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L-dD~~tL~~~ 128 (167)
.-|+.+.||++|...|-....++|++--.+|-+..+ ..+.+|.++
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 468889999999999999999999886556655444 344555544
No 203
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=34.93 E-value=34 Score=28.21 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=26.7
Q ss_pred CCceEEEEEee-CCEEEEEEEcC--CCCHHHHHHHHHhhhCCCCC
Q 031040 67 GEGSITIRVST-VSKWHDISIKA--TSTFGELKMILSMVSGLEPR 108 (167)
Q Consensus 67 ~~p~I~I~Vk~-g~~~~~VeV~~--t~TV~eLK~~Ia~~TGVppe 108 (167)
+.|.++|+|-. ++..+.++|++ .+|+.||- +..|++.+
T Consensus 2 ~~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~ 42 (322)
T 4dxa_B 2 SPEFEKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQE 42 (322)
T ss_dssp ---CCEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTT
T ss_pred CCCceEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCcc
Confidence 35666777775 55788999999 99999993 34688754
No 204
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=34.77 E-value=27 Score=24.35 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=28.2
Q ss_pred EEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchh-hhcCC
Q 031040 83 DISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFL-HMVGV 130 (167)
Q Consensus 83 ~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL-~~~GI 130 (167)
-...++..+...|++.|++.++++++ .+.++..| .++|+
T Consensus 19 ~~~m~~mei~~~l~~iiae~l~~~~~---------~I~~d~~l~~dLGl 58 (101)
T 4dxe_H 19 YFQSNAMENFDKVKDIIVDRLGVDAD---------KVTEDASFKDDLGA 58 (101)
T ss_dssp -----CTTHHHHHHHHHHHTTCCCGG---------GCCTTCBTTTTSCC
T ss_pred HHhcCHHHHHHHHHHHHHHHHCcChh---------hCCCCCcchhhcCC
Confidence 34566778899999999999999876 35666667 88887
No 205
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=34.16 E-value=64 Score=24.53 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=26.1
Q ss_pred EEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCC
Q 031040 72 TIRVSTVSKWHDISIKATSTFGELKMILSMVSGLE 106 (167)
Q Consensus 72 ~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVp 106 (167)
.|++.-+++.+++++++..|+.++-......+|..
T Consensus 4 ~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k 38 (161)
T 1rm6_C 4 ILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGTK 38 (161)
T ss_dssp EEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTSC
T ss_pred eEEEEECCEEEEEecCCcCcHHHHHHHcCCCcccc
Confidence 46666677899999999999999876654445443
No 206
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=33.76 E-value=44 Score=24.32 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=33.5
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec-CCcchhhhc
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER-EDNEFLHMV 128 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L-dD~~tL~~~ 128 (167)
.-|+.+.||++|...|-....++|++--.+|-+..+ ..+.+|.++
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 458889999999999999999999886666655544 344555544
No 207
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=33.68 E-value=19 Score=33.22 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=14.6
Q ss_pred eeeEecC--CceeEEeecCC
Q 031040 47 IKWELRP--GGMLVQKRESG 64 (167)
Q Consensus 47 ~~we~rp--ggmlvq~r~~~ 64 (167)
..||+|+ ||+|||.||..
T Consensus 379 ~~~e~r~v~GG~LvQ~~d~~ 398 (534)
T 4ehi_A 379 DKYDFKHIDGGFVYQNSDEV 398 (534)
T ss_dssp CSEEEEEETTEEEEEECCCC
T ss_pred CCeEEEEEeeEEEEECCCCC
Confidence 3588887 99999999843
No 208
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=32.29 E-value=1.3e+02 Score=23.09 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=34.6
Q ss_pred ceEEEEEee----CCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 69 GSITIRVST----VSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 69 p~I~I~Vk~----g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
...+|+|.. ..-+..|.|+++.|+.+|=..|+..+|-.-...--++
T Consensus 7 ~iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~~~HL~~F~ 56 (188)
T 2i1s_A 7 KVYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWEDYHLHEFE 56 (188)
T ss_dssp EEEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCCCCSCEEEE
T ss_pred cEEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCCCCEeeEEE
Confidence 334555553 2378889999999999999999999998865544443
No 209
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=31.43 E-value=74 Score=22.12 Aligned_cols=35 Identities=6% Similarity=0.004 Sum_probs=30.9
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
..+.+.|++.+|=-|+|+.++..+++.+..-.-+-
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~ 57 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQN 57 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeee
Confidence 46889999999999999999999999998776543
No 210
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=31.00 E-value=78 Score=24.01 Aligned_cols=29 Identities=7% Similarity=-0.016 Sum_probs=23.4
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHH
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMI 98 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~ 98 (167)
.+.|++.-+++.+.+++++..|+.++-..
T Consensus 9 ~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 9 LMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred cceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 35677777778899999999999987655
No 211
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=30.67 E-value=74 Score=22.38 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=34.2
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEE-EEcCeec
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRL-LFKGKER 119 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKL-ifkGK~L 119 (167)
..+.+.|++.+|=-|+|+.|+..+++.+..-+- ...||..
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKK 62 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCcee
Confidence 468899999999999999999999999987655 5677654
No 212
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=30.14 E-value=94 Score=22.30 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHhhh-CCCCCceEEEEcC
Q 031040 90 STFGELKMILSMVS-GLEPREQRLLFKG 116 (167)
Q Consensus 90 ~TV~eLK~~Ia~~T-GVppe~QKLifkG 116 (167)
.|+.+|+.+|+..+ ++....-.|.|+.
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~D 69 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRA 69 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 48999999999995 6666677777764
No 213
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=29.57 E-value=53 Score=23.32 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=32.8
Q ss_pred EEEEEcCCCCHHHHHHHHHhhhCCCCCceEEE-EcCeec
Q 031040 82 HDISIKATSTFGELKMILSMVSGLEPREQRLL-FKGKER 119 (167)
Q Consensus 82 ~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLi-fkGK~L 119 (167)
+.+.|++.+|=-|+|+.|+..+++.+..-.-+ ..||..
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~k 63 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRK 63 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccc
Confidence 88999999999999999999999999887653 566544
No 214
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=29.42 E-value=1e+02 Score=20.78 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=41.2
Q ss_pred eEEEEEeeCCEEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCc
Q 031040 70 SITIRVSTVSKWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPA 143 (167)
Q Consensus 70 ~I~I~Vk~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~ 143 (167)
.|.|+...|. .++++..+|+.|+=..|....|-. -.-...+|+..+-+ +-+++|+.|.++..+.
T Consensus 7 ~i~v~tP~G~---~~~lp~GaT~~D~A~~Ih~~lg~~--~v~AkVNG~~v~L~-----~~L~~gd~VeIit~~~ 70 (78)
T 3hvz_A 7 EVFVFTPKGD---VISLPIGSTVIDFAYAIHSAVGNR--MIGAKVDGRIVPID-----YKVKTGEIIDVLTTKE 70 (78)
T ss_dssp EEEEECTTSC---EEEEETTCBHHHHHHHHCHHHHHT--EEEEEETTEEECTT-----CBCCTTCBEEEEECC-
T ss_pred eEEEECCCCC---EEEecCCCCHHHHHHHhhhhhhcc--eEEEEECCEEcCCC-----cccCCCCEEEEEccCc
Confidence 4555555553 477899999999988776544321 12234577765432 4589999999886544
No 215
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=29.13 E-value=94 Score=20.65 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=27.9
Q ss_pred CceeEEeecCCCC--CCceEEEEEee--CC-EEEEEEEcCCCCH--HHHHHHHHh
Q 031040 54 GGMLVQKRESGCE--GEGSITIRVST--VS-KWHDISIKATSTF--GELKMILSM 101 (167)
Q Consensus 54 ggmlvq~r~~~~~--~~p~I~I~Vk~--g~-~~~~VeV~~t~TV--~eLK~~Ia~ 101 (167)
|-|||.-|..+.. =...|+|+|.. ++ -..-|+.+.+.+| .|+.+.+++
T Consensus 1 ~~MLvLtRk~GE~I~Igd~I~I~Vl~i~g~~VrlGI~AP~~v~I~R~Ei~~~i~~ 55 (63)
T 2bti_A 1 GSMLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQA 55 (63)
T ss_dssp -CEEEEEEETTCEEEETTTEEEEEEEEETTEEEEEEEECTTSCEEEHHHHHHHHH
T ss_pred CceEEEeccCCCeEEeCCCEEEEEEEEeCCEEEEEEECCCCCcEeHHHHHHHHHH
Confidence 5799999987631 13467777774 43 3334555555554 355555544
No 216
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=29.00 E-value=71 Score=21.67 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=25.1
Q ss_pred ceEEEEEe-eCCEEEEEEEcCCCCHHHHHHHHHhhhCCCC
Q 031040 69 GSITIRVS-TVSKWHDISIKATSTFGELKMILSMVSGLEP 107 (167)
Q Consensus 69 p~I~I~Vk-~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp 107 (167)
+.++|++. ..+..+.+++.+..|+.+.-.. .|++.
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~----~gi~i 37 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHA----NNIDL 37 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHHH----TTCCC
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHHH----cCCCc
Confidence 45678887 5556788999999999886433 46654
No 217
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=28.84 E-value=68 Score=25.23 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHhhhCCCCC-ceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCch
Q 031040 90 STFGELKMILSMVSGLEPR-EQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAI 144 (167)
Q Consensus 90 ~TV~eLK~~Ia~~TGVppe-~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~ 144 (167)
..+.+|++.|++..|+++. ++.++..|-.---. .|..+ +++||.|++.. |..
T Consensus 35 ~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~-~~~gd~vi~~~-~~~ 87 (384)
T 3zrp_A 35 EALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL-LKPNDKILVVS-NGV 87 (384)
T ss_dssp HHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG-CCTTCEEEEEC-SSH
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh-cCCCCEEEEec-CCc
Confidence 4577889999999999875 56666666433223 45555 78899886653 443
No 218
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=27.80 E-value=21 Score=32.41 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=13.9
Q ss_pred eeEecC--CceeEEeecC
Q 031040 48 KWELRP--GGMLVQKRES 63 (167)
Q Consensus 48 ~we~rp--ggmlvq~r~~ 63 (167)
.||+|. ||+|||.||.
T Consensus 317 ~~e~r~v~GG~LvQ~~D~ 334 (464)
T 1zcz_A 317 SWAGKMAFGSLVLSERKY 334 (464)
T ss_dssp CEEEEEETTEEEEEECCC
T ss_pred CceEEEEcCEEEEECCCC
Confidence 588886 9999999985
No 219
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=27.07 E-value=22 Score=32.75 Aligned_cols=17 Identities=47% Similarity=0.806 Sum_probs=14.2
Q ss_pred eeEecC--CceeEEeecCC
Q 031040 48 KWELRP--GGMLVQKRESG 64 (167)
Q Consensus 48 ~we~rp--ggmlvq~r~~~ 64 (167)
.||+|. ||+|||.||..
T Consensus 370 ~~e~r~v~GG~LvQ~~D~~ 388 (523)
T 3zzm_A 370 GSELRPISGGLLIQQSDQL 388 (523)
T ss_dssp CEEEEEETTEEEEEECCCS
T ss_pred CeEEEEEeeeEEEECCCCc
Confidence 588886 99999999843
No 220
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=26.27 E-value=1.5e+02 Score=21.82 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHhhh-CCCCCceEEEEcC
Q 031040 90 STFGELKMILSMVS-GLEPREQRLLFKG 116 (167)
Q Consensus 90 ~TV~eLK~~Ia~~T-GVppe~QKLifkG 116 (167)
.|+.+|+.+|+..+ ++......|.|+.
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkD 84 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRA 84 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 49999999999998 7777778888874
No 221
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=26.02 E-value=75 Score=21.80 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=25.1
Q ss_pred CceEEEEEe-eCCEEEEEEEcCCCCHHHHHHHHHhhhCCCC
Q 031040 68 EGSITIRVS-TVSKWHDISIKATSTFGELKMILSMVSGLEP 107 (167)
Q Consensus 68 ~p~I~I~Vk-~g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp 107 (167)
..+++|++. ..+..+.+++.+..|+.+.-.. .||+.
T Consensus 4 ~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~----~gi~i 40 (108)
T 2bt6_A 4 GDKITVHFINRDGETLTTKGKIGDSLLDVVVQ----NNLDI 40 (108)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTCBHHHHHHH----TTCCC
T ss_pred CceEEEEEECCCCCEEEEEECCCChHHHHHHH----cCCCC
Confidence 456788887 3456789999999999875333 56653
No 222
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.00 E-value=1e+02 Score=21.43 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=31.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEE
Q 031040 80 KWHDISIKATSTFGELKMILSMVSGLEPREQRLLF 114 (167)
Q Consensus 80 ~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLif 114 (167)
.++.+.|++.+|=-++|+.++..+++.+..-+-+-
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~ 58 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLI 58 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeE
Confidence 47889999999999999999999999998776654
No 223
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.88 E-value=95 Score=28.69 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=34.7
Q ss_pred eEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhhhCCCC-CceEEEE
Q 031040 70 SITIRVST-VSKWHDISIKATSTFGELKMILSMVSGLEP-REQRLLF 114 (167)
Q Consensus 70 ~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~TGVpp-e~QKLif 114 (167)
.|.++|.. ++..+.+.|++.+|+.||-..|....|+.. +---|.|
T Consensus 263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 46666665 447889999999999999999999999765 3344444
No 224
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=25.85 E-value=55 Score=25.95 Aligned_cols=49 Identities=18% Similarity=0.113 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 90 STFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 90 ~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
....+|++.|++..|++..++.++..|-.---...+..+ +++|+.|++.
T Consensus 67 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~Vl~~ 115 (367)
T 3euc_A 67 PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA-ARPGAKVMAP 115 (367)
T ss_dssp CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT-CCTTCEEEEE
T ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH-cCCCCEEEEc
Confidence 468999999999999964556666666432222233333 6788887543
No 225
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=25.57 E-value=1.3e+02 Score=21.79 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=25.8
Q ss_pred ceEEEEEee-CCEEEEEEEcCCCCHHHHHHHHHhh
Q 031040 69 GSITIRVST-VSKWHDISIKATSTFGELKMILSMV 102 (167)
Q Consensus 69 p~I~I~Vk~-g~~~~~VeV~~t~TV~eLK~~Ia~~ 102 (167)
..+.|.+-- .|-...++++.++|+.++|+.|-+.
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 345555543 4467789999999999999988876
No 226
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=24.71 E-value=55 Score=25.99 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhhhCCCCCceEEEE-cCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 91 TFGELKMILSMVSGLEPREQRLLF-KGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 91 TV~eLK~~Ia~~TGVppe~QKLif-kGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
...++++.|++..|++++.+.+++ .|-.--....+..+ +++||.|++...+
T Consensus 50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l-~~~gd~vl~~~~~ 101 (362)
T 2c0r_A 50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF-LKEGQTANYVMTG 101 (362)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH-CCTTCEEEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc-CCCCCeEEEEecC
Confidence 467899999999999766465556 45322222334444 5788888665443
No 227
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=24.30 E-value=61 Score=19.95 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=20.9
Q ss_pred cCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 115 KGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 115 kGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
+|...-..+....+||++||.|.+....
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCEEEEEECS
T ss_pred CCEEEeCHHHHHHcCcCCCCEEEEEEEC
Confidence 4555555677889999999999887543
No 228
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=23.18 E-value=59 Score=25.71 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhh
Q 031040 90 STFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKD 146 (167)
Q Consensus 90 ~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~ 146 (167)
....+|++.|++..|++++ +.++..|-.---...+..+.+++|++|++. +|....
T Consensus 59 ~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~-~~~~~~ 113 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPN-TITITDNVTTGCDIVLWGLDWHQGDEILLT-DCEHPG 113 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGG-GEEEESSHHHHHHHHHHHSCCCTTCEEEEE-TTCCHH
T ss_pred HHHHHHHHHHHHHcCCCHH-HEEEeCChHHHHHHHHhCCCCCCCCEEEEe-cCcccH
Confidence 4578999999999999876 455555543222334555557788888654 555443
No 229
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=23.11 E-value=62 Score=25.19 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 91 TFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 91 TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
.+.+|++.|++..|+++ ++-++..|-.---...+..+ +++|+.|++.
T Consensus 35 ~~~~l~~~la~~~g~~~-~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~ 81 (352)
T 1iug_A 35 VFLKARGLLREAFRTEG-EVLILTGSGTLAMEALVKNL-FAPGERVLVP 81 (352)
T ss_dssp HHHHHHHHHHHHHTCSS-EEEEEESCHHHHHHHHHHHH-CCTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCC-ceEEEcCchHHHHHHHHHhc-cCCCCeEEEE
Confidence 36889999999999986 56666656432223334444 6788887654
No 230
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=22.83 E-value=57 Score=21.04 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=21.5
Q ss_pred EcCeecCCcchhhhcCCCCCCEEEEecCC
Q 031040 114 FKGKEREDNEFLHMVGVRDKDKVLLLEDP 142 (167)
Q Consensus 114 fkGK~LdD~~tL~~~GIkdgskL~Lv~~p 142 (167)
-+|...-..+....+||++||.|.+...+
T Consensus 20 ~kGqItIPkeiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 20 ELGRVVIPIELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp TTCEEECCHHHHHHTTCCTTCEEEEEEET
T ss_pred CCCEEEeCHHHHHHcCCCCCCEEEEEEEC
Confidence 35555556677889999999999876543
No 231
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=22.79 E-value=62 Score=25.54 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEec
Q 031040 90 STFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLE 140 (167)
Q Consensus 90 ~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~ 140 (167)
....+|++.|++.+|.++.++.++..|..-.-...+..+ +++|+.|++..
T Consensus 56 ~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~-~~~gd~vl~~~ 105 (393)
T 3kgw_A 56 QIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL-LEPGDSFLTGT 105 (393)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH-CCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc-CCCCCEEEEEe
Confidence 346788999999999986655555455433233445555 78999987663
No 232
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=22.46 E-value=67 Score=21.86 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=32.5
Q ss_pred EEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchh-hhcCCCCCCEEEE
Q 031040 84 ISIKATSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFL-HMVGVRDKDKVLL 138 (167)
Q Consensus 84 VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL-~~~GIkdgskL~L 138 (167)
...+.+.....|++.|++.+|++++ .+.++..| .++|+-.-+.|.|
T Consensus 16 ~~~t~~~i~~~l~~iia~~l~~~~~---------~i~~d~~l~~dLGlDSL~~vel 62 (97)
T 3ejb_A 16 RGSHMSTIEERVKKIIGEQLGVKQE---------EVTNNASFVEDLGADSLDTVEL 62 (97)
T ss_dssp --CCCCCHHHHHHHHHHHHSCCCTT---------TSCTTCBTTTTTCCCTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCcCHH---------HCCCCCCchhhcCCCHHHHHHH
Confidence 4456677889999999999999876 35556667 7888754444433
No 233
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=21.26 E-value=67 Score=25.58 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEecCCchhh
Q 031040 90 STFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLLEDPAIKD 146 (167)
Q Consensus 90 ~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv~~p~~~~ 146 (167)
....+|++.|++.+|.+++.+.++..|-.---...+..+ +++|+.|++. +|....
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~-~~~gd~vl~~-~~~~~~ 105 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL-LEEGDRVLIA-VNGIWA 105 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-CCTTCEEEEE-ESSHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh-cCCCCeEEEE-cCCccc
Confidence 347899999999999988756655565422222234444 6788887544 555443
No 234
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=21.24 E-value=77 Score=24.96 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcC--CCCCCEEEEe
Q 031040 89 TSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVG--VRDKDKVLLL 139 (167)
Q Consensus 89 t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~G--IkdgskL~Lv 139 (167)
...+.+|++.|++.+|.+ +.++..|-.---...|..++ +++|+.|++.
T Consensus 31 ~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~ 80 (375)
T 2fnu_A 31 GKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFSEFSADRNEIITT 80 (375)
T ss_dssp SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSSCCCTTSCEEEEC
T ss_pred ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHhcccCCCCCEEEEC
Confidence 456889999999999987 66777765433344566666 8889987554
No 235
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=21.18 E-value=1.4e+02 Score=22.17 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=48.3
Q ss_pred ceEEEEEeeCC-EEEEEEEcCCCCHHHHHHHHHhhhCCCCC------ceEEE---EcCee--cCCcchhhhcCCCCCCEE
Q 031040 69 GSITIRVSTVS-KWHDISIKATSTFGELKMILSMVSGLEPR------EQRLL---FKGKE--REDNEFLHMVGVRDKDKV 136 (167)
Q Consensus 69 p~I~I~Vk~g~-~~~~VeV~~t~TV~eLK~~Ia~~TGVppe------~QKLi---fkGK~--LdD~~tL~~~GIkdgskL 136 (167)
..|..+|-... ....+.+..+.|+.+++..++++.+..-+ ++.|. +.|-. |++++.--.-.+.-...|
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRL 87 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHL 87 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 35666666533 45578999999999999999999987554 78886 56642 444433222234456778
Q ss_pred EEec
Q 031040 137 LLLE 140 (167)
Q Consensus 137 ~Lv~ 140 (167)
++..
T Consensus 88 fvc~ 91 (120)
T 2dhz_A 88 FACT 91 (120)
T ss_dssp EEEC
T ss_pred EEee
Confidence 8764
No 236
>3aa0_C 21MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Mus musculus}
Probab=21.14 E-value=22 Score=19.73 Aligned_cols=10 Identities=50% Similarity=0.547 Sum_probs=7.7
Q ss_pred ccccccccee
Q 031040 2 IKLRSKRFCR 11 (167)
Q Consensus 2 ~~~~~~~~~~ 11 (167)
-|||+||.+.
T Consensus 6 tklrpkr~kk 15 (26)
T 3aa0_C 6 TKLRPKRNKK 15 (26)
T ss_pred hhcCcchhhc
Confidence 4899999654
No 237
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=20.52 E-value=2.2e+02 Score=19.77 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=42.3
Q ss_pred CceEEEEEee-CC----EEEEEEEcCCCCHHHHHHHHHhhhCCCCCceEEEEcCeec-CCcchhh----hcCCCCCCEEE
Q 031040 68 EGSITIRVST-VS----KWHDISIKATSTFGELKMILSMVSGLEPREQRLLFKGKER-EDNEFLH----MVGVRDKDKVL 137 (167)
Q Consensus 68 ~p~I~I~Vk~-g~----~~~~VeV~~t~TV~eLK~~Ia~~TGVppe~QKLifkGK~L-dD~~tL~----~~GIkdgskL~ 137 (167)
+..|+|+++. |. .....-|+++.||++|-..|.....+ +..-|+.+..-. ..+++++ .++ ++..|+
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk--~dg~Ly 81 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFK--TNDELI 81 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHC--BTTEEE
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhC--CCCEEE
Confidence 4568888776 33 22235699999999999999999998 444444566533 3344444 345 345555
Q ss_pred E
Q 031040 138 L 138 (167)
Q Consensus 138 L 138 (167)
|
T Consensus 82 v 82 (91)
T 3w1s_C 82 V 82 (91)
T ss_dssp E
T ss_pred E
Confidence 4
No 238
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=20.22 E-value=68 Score=25.52 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHhhhCCCCCceEEEEcCeecCCcchhhhcCCCCCCEEEEe
Q 031040 89 TSTFGELKMILSMVSGLEPREQRLLFKGKEREDNEFLHMVGVRDKDKVLLL 139 (167)
Q Consensus 89 t~TV~eLK~~Ia~~TGVppe~QKLifkGK~LdD~~tL~~~GIkdgskL~Lv 139 (167)
.....+|++.|++.+|++++.+.++..|-.---...+..+ +++|+.|++.
T Consensus 51 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~ 100 (393)
T 2huf_A 51 LKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNL-LEDGDVILIG 100 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH-CCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH-hCCCCEEEEE
Confidence 3467899999999999987655555455432222344444 6788887554
Done!