BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031041
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z992|SST6_SCHPO ESCRT-I complex subunit vps23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sst6 PE=3 SV=2
Length = 487
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 88 EDLITVKDAKIVVESQDEDKI-QVRVDLTGDATQRVFDKVLTNLA--------RSAPPIP 138
ED T++ I V++QDE+KI +VR+ L+ A FDK + A S PPI
Sbjct: 40 EDTFTLQAINIEVDTQDENKIEEVRIYLSTPA----FDKTILTSACITVRSYYPSQPPIV 95
Query: 139 GFRREKGGKTTKVSIF 154
EKGGK S+
Sbjct: 96 QLLDEKGGKHKYTSLL 111
>sp|Q1GYZ0|PYRC_METFK Dihydroorotase OS=Methylobacillus flagellatus (strain KT / ATCC
51484 / DSM 6875) GN=pyrC PE=3 SV=1
Length = 345
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 8 MTIIPSKFQNI----ELFSPRSCRNYTLCHP-NAPKSVNFFHF-QNSSCFF---VRPSLY 58
M + +FQ + E + + N+ P N ++ H N + F +RP Y
Sbjct: 159 MVPLLERFQGLRVVFEHITTKDAANFVAGAPENVAATITAHHLLMNRNAMFNGGIRPHHY 218
Query: 59 CNPLMRRVQHVLKTVSAVDSG 79
C P+++R +H L V+A SG
Sbjct: 219 CLPVLKREEHRLALVAAATSG 239
>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=tig PE=3 SV=1
Length = 471
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREK 144
+I + +++T + TQ+ +++V+ NL+R+ IPGFR+ K
Sbjct: 12 QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK 48
>sp|A2AV37|EX3L1_DANRE Exocyst complex component 3-like protein OS=Danio rerio GN=exoc3l1
PE=2 SV=1
Length = 780
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 105 EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPI-PGFR 141
E+ + V +D+ GD + V VL L +SAPP+ PG+R
Sbjct: 720 EEHVSVLLDIRGDVPKEVRKSVLDFLDQSAPPLPPGYR 757
>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig
PE=3 SV=1
Length = 471
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREK 144
+I + +++T + TQ+ +++V+ NL+R+ IPGFR+ K
Sbjct: 12 QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK 48
>sp|Q8HTL7|RPOB2_CHLRE DNA-directed RNA polymerase subunit beta C-terminal section
OS=Chlamydomonas reinhardtii GN=rpoB2 PE=2 SV=1
Length = 626
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 1 MASASATMTIIPSKFQNIELFSPRSCRNYT-LCHPNAPKSVNFFHFQNSSCFFVRPSLYC 59
M A A+ + + SK L+ R L PN P + F +NS CF
Sbjct: 402 MYGADASRSFVLSK-----LYEARKKTGLKWLLDPNHPGKIRLFDGRNSECF-------D 449
Query: 60 NPLMRRVQHVLKTVSAVDSGVEVSITEPEDLIT 92
+ + +VLK V VD + T P L+T
Sbjct: 450 QTVTVGIAYVLKLVHMVDDKMHARSTGPYSLVT 482
>sp|A1SV88|HEM1_PSYIN Glutamyl-tRNA reductase OS=Psychromonas ingrahamii (strain 37)
GN=hemA PE=3 SV=1
Length = 419
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDA 96
+RPSLYC + +QH+ + +DS V + EP+ L +K A
Sbjct: 82 LRPSLYCYSEYQAIQHLFRVSCGLDSLV---LGEPQILGQIKQA 122
>sp|B2UFJ8|PYRC_RALPJ Dihydroorotase OS=Ralstonia pickettii (strain 12J) GN=pyrC PE=3
SV=1
Length = 344
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 45 FQNSSCFFV---RPSLYCNPLMRRVQHVLKTVSAVDSG 79
N + FV RP YC P+++R H L V+A SG
Sbjct: 202 LYNRNALFVGGIRPHYYCLPVLKRETHRLALVAAATSG 239
>sp|Q8Y249|PYRC_RALSO Dihydroorotase OS=Ralstonia solanacearum (strain GMI1000) GN=pyrC
PE=3 SV=1
Length = 344
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 47 NSSCFFV---RPSLYCNPLMRRVQHVLKTVSAVDSG 79
N + FV RP YC P+++R H L V+A SG
Sbjct: 204 NRNALFVGGIRPHYYCLPVLKRETHRLALVAAATSG 239
>sp|A9BSM4|PYRC_DELAS Dihydroorotase OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
GN=pyrC PE=3 SV=1
Length = 346
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGV 80
+RP YC P+++R H L V A SG+
Sbjct: 215 IRPHYYCLPVLKRETHRLALVEAATSGL 242
>sp|Q5P7G6|HEM1_AROAE Glutamyl-tRNA reductase OS=Aromatoleum aromaticum (strain EbN1)
GN=hemA PE=3 SV=1
Length = 418
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDA 96
V P LY P ++HV + S +DS V + EP+ L VKDA
Sbjct: 80 VSPYLYTYPQRDAIRHVFRVASGLDSMV---LGEPQILGQVKDA 120
>sp|Q7MFB3|PYRC_VIBVY Dihydroorotase OS=Vibrio vulnificus (strain YJ016) GN=pyrC PE=3
SV=2
Length = 342
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSG 79
++P YC P+++R H L +SA SG
Sbjct: 211 IKPHFYCLPILKRNTHQLALISAATSG 237
>sp|Q8D3T9|PYRC_VIBVU Dihydroorotase OS=Vibrio vulnificus (strain CMCP6) GN=pyrC PE=3
SV=2
Length = 342
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSG 79
++P YC P+++R H L +SA SG
Sbjct: 211 IKPHFYCLPILKRNTHQLALISAATSG 237
>sp|C6DKU3|PYRC_PECCP Dihydroorotase OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=pyrC PE=3 SV=1
Length = 347
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGVE 81
VRP LYC P+++R H AV SG E
Sbjct: 216 VRPHLYCLPILKRNTHQQALREAVASGCE 244
>sp|P56994|HEM1_NEIMB Glutamyl-tRNA reductase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=hemA PE=3 SV=1
Length = 415
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQD 104
+RP LY + V+H + +DS V + EP+ L +KDA V + Q+
Sbjct: 79 IRPYLYALDMQETVRHAFRVACGLDSMV---LGEPQILGQIKDAVRVAQEQE 127
>sp|B1XL18|TIG_SYNP2 Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=tig PE=3 SV=1
Length = 454
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREK 144
K++ E ++ + +++ D TQ+ +D + LAR+ +PGFR+ K
Sbjct: 2 KVIQEKLPASQVGLEIEVPADVTQKAYDDTVRKLARTV-NLPGFRKGK 48
>sp|B7VSB8|RNB_VIBSL Exoribonuclease 2 OS=Vibrio splendidus (strain LGP32) GN=rnb PE=3
SV=1
Length = 668
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 38 KSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLI 91
K F + + FF+ P P M++ H K ++ + + E + EPE+LI
Sbjct: 31 KGFGFLEVDSKTSFFIPP-----PYMKKCVHGDKVIAIIRTEKEREVAEPEELI 79
>sp|Q7V2D5|CHLN_PROMP Light-independent protochlorophyllide reductase subunit N
OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=chlN PE=3 SV=1
Length = 418
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 73 VSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLA- 131
V+ SG+E + T+ ED +K ++ES D++K+ + L + R F K+ N+
Sbjct: 130 VNYSGSGIETTFTQGED-GALKALVPLMESTDDEKLLLVGTLANNVEDR-FKKIFNNIGI 187
Query: 132 ---RSAPPIPGFRREKGGKTTKV 151
S PP K GK TKV
Sbjct: 188 TNVESFPPRQSTELPKIGKNTKV 210
>sp|Q1J0P7|RPOC_DEIGD DNA-directed RNA polymerase subunit beta' OS=Deinococcus geothermalis
(strain DSM 11300) GN=rpoC PE=3 SV=1
Length = 1537
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 70 LKTVSAVDSGVEVSITEP--EDLITVKDAKIVVESQ--------DEDKIQVRVDLTGDAT 119
L T+S + G++ + P +L+ D K+ Q DE++ + V L D T
Sbjct: 949 LSTISGITIGIDDIVLPPNKRELLAEADEKLAAIEQNYEFGFMTDEERYKQVVQLWNDTT 1008
Query: 120 QRVFDKVLTNLARSAPPIP 138
V + V N +R+ P P
Sbjct: 1009 DEVKNAVFENFSRNYPFNP 1027
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,386,608
Number of Sequences: 539616
Number of extensions: 2101312
Number of successful extensions: 6600
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6589
Number of HSP's gapped (non-prelim): 30
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)