Query 031041
Match_columns 167
No_of_seqs 28 out of 30
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 13:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nsc_A Trigger factor, TF; cha 98.2 1.6E-06 5.5E-11 62.7 5.9 53 97-156 2-54 (109)
2 1p9y_A Trigger factor, TF; alp 98.2 2.9E-06 1E-10 62.5 6.7 54 96-156 4-57 (121)
3 2d3o_1 Trigger factor, TF; rib 98.1 1.8E-06 6E-11 62.8 3.7 52 97-156 2-53 (112)
4 3gty_X Trigger factor, TF; cha 97.0 0.00091 3.1E-08 58.0 6.2 53 97-156 2-54 (433)
5 1t11_A Trigger factor, TF; hel 96.9 0.0021 7.2E-08 55.1 6.8 54 96-156 4-57 (392)
6 1w26_A Trigger factor, TF; cha 96.6 0.0027 9.3E-08 54.9 5.4 53 97-156 2-54 (432)
7 1tol_A G3P - TOLA, protein (fu 51.9 41 0.0014 27.7 6.8 56 96-166 155-211 (222)
8 1lr0_A TOLA protein; domain-sw 36.1 65 0.0022 23.5 5.1 33 103-138 62-95 (129)
9 1lql_A OSMC, osmotical inducib 24.4 1E+02 0.0035 22.8 4.5 38 92-129 92-139 (166)
10 2ygw_A Malonyl-COA decarboxyla 23.6 16 0.00054 33.4 -0.2 23 121-143 276-307 (460)
11 3q9p_A Heat shock protein beta 21.8 54 0.0019 21.8 2.3 12 105-116 6-17 (85)
No 1
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=98.25 E-value=1.6e-06 Score=62.71 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=47.0
Q ss_pred eEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCceeccCCcccccchhHH
Q 031041 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVSIFWH 156 (167)
Q Consensus 97 ~v~V~s~dd~~IkirVdvsG~~Tq~VFd~Vf~klv~aAqPiPGFRr~KGGkt~~IPk~iL 156 (167)
+++++..+..+.+|.|+|+....+.-+|+++.++++.+ -|||||+-| +|..++
T Consensus 2 ~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRkGK------vP~~vi 54 (109)
T 2nsc_A 2 EVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRV-EIPGFRKGR------IPKNVL 54 (109)
T ss_dssp EEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTC-CCTTSCTTC------CCHHHH
T ss_pred ceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccC-CCCCcCCCC------CCHHHH
Confidence 46788889999999999999999999999999999998 599999733 788764
No 2
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=98.21 E-value=2.9e-06 Score=62.45 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=47.9
Q ss_pred eeEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCceeccCCcccccchhHH
Q 031041 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVSIFWH 156 (167)
Q Consensus 96 ~~v~V~s~dd~~IkirVdvsG~~Tq~VFd~Vf~klv~aAqPiPGFRr~KGGkt~~IPk~iL 156 (167)
.+++++..+..+.+|.|+|+....+.-+|+++.++++.+ -|||||+ | | +|..++
T Consensus 4 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v-~ipGFRk--G-K---vP~~vi 57 (121)
T 1p9y_A 4 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKV-RIDGLRK--G-K---VPMNIV 57 (121)
T ss_dssp CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTC-CCTTSCT--T-C---SCHHHH
T ss_pred ceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-ccCCcCC--C-C---CCHHHH
Confidence 467889999999999999999999999999999999998 5999996 3 3 788764
No 3
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=98.11 E-value=1.8e-06 Score=62.78 Aligned_cols=52 Identities=27% Similarity=0.528 Sum_probs=39.2
Q ss_pred eEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCceeccCCcccccchhHH
Q 031041 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVSIFWH 156 (167)
Q Consensus 97 ~v~V~s~dd~~IkirVdvsG~~Tq~VFd~Vf~klv~aAqPiPGFRr~KGGkt~~IPk~iL 156 (167)
+++++. +..+.+|.|+|+....+.-+|+++.++++.+ -|||||+ | | +|..++
T Consensus 2 ~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRk--G-K---vP~~vi 53 (112)
T 2d3o_1 2 AELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDV-RVPGFRP--G-K---APRKVI 53 (112)
T ss_dssp ---------CCEEEEECCCGGGTHHHHHHHHHHHHTTS-CBTTBCT--T-C---CCSTTH
T ss_pred ceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-CCCCcCC--C-C---CCHHHH
Confidence 467888 8899999999999999999999999999998 4999996 3 3 777654
No 4
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=97.04 E-value=0.00091 Score=58.01 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=44.8
Q ss_pred eEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCceeccCCcccccchhHH
Q 031041 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVSIFWH 156 (167)
Q Consensus 97 ~v~V~s~dd~~IkirVdvsG~~Tq~VFd~Vf~klv~aAqPiPGFRr~KGGkt~~IPk~iL 156 (167)
+|+++..+.++.++.|+|+...-+.-+|+++.++++.+. |||||+ | | +|..++
T Consensus 2 ~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRk--G-K---vP~~vi 54 (433)
T 3gty_X 2 EVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G-R---IPKNVL 54 (433)
T ss_dssp EEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--C--C-C---CCSHHH
T ss_pred ceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCC--C-C---CcHHHH
Confidence 467888899999999999999999999999999999997 999995 4 3 776654
No 5
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=96.85 E-value=0.0021 Score=55.07 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=47.9
Q ss_pred eeEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCceeccCCcccccchhHH
Q 031041 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVSIFWH 156 (167)
Q Consensus 96 ~~v~V~s~dd~~IkirVdvsG~~Tq~VFd~Vf~klv~aAqPiPGFRr~KGGkt~~IPk~iL 156 (167)
.+++++.-+..+.+|.|+|+....+.-+|+++.++++.+ -|||||+ | | +|..++
T Consensus 4 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRk--G-K---vP~~~i 57 (392)
T 1t11_A 4 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNR-RFDGFRK--G-K---VPMKMV 57 (392)
T ss_dssp CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTC-CCTTSCS--S-C---CCHHHH
T ss_pred ceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccC-CCCCCCC--C-C---CCHHHH
Confidence 467899999999999999999999999999999999998 6999996 3 3 787764
No 6
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=96.55 E-value=0.0027 Score=54.93 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=46.5
Q ss_pred eEEEEcCCCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCceeccCCcccccchhHH
Q 031041 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVSIFWH 156 (167)
Q Consensus 97 ~v~V~s~dd~~IkirVdvsG~~Tq~VFd~Vf~klv~aAqPiPGFRr~KGGkt~~IPk~iL 156 (167)
+++++.-+..+.+|.|+|+....+.-+|+++.++++.+ -|||||+ | | +|..++
T Consensus 2 ~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRk--G-K---vP~~vi 54 (432)
T 1w26_A 2 QVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKV-RIDGFRK--G-K---VPMNIV 54 (432)
T ss_dssp EEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHT-TCGGGCC--S-S---SCHHHH
T ss_pred ceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhC-CCCCcCC--C-C---CCHHHH
Confidence 46778888999999999999999999999999999998 5999997 3 3 777764
No 7
>1tol_A G3P - TOLA, protein (fusion protein consisting of minor coat protein, glycine rich linker, TOLA,...; bacteriophage M13, phage infection; 1.85A {Enterobacteria phage M13} SCOP: b.37.1.1 d.212.1.1 PDB: 2x9a_B 3qdr_A* 3qdp_A* 1s62_A
Probab=51.89 E-value=41 Score=27.69 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=39.0
Q ss_pred eeEEEEcC-CCCeEEEEEEecChhhHHHHHHHHHHhhhcCCCCCCceeccCCcccccchhHHHHhhheeeec
Q 031041 96 AKIVVESQ-DEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVSIFWHWVFQQLKIVF 166 (167)
Q Consensus 96 ~~v~V~s~-dd~~IkirVdvsG~~Tq~VFd~Vf~klv~aAqPiPGFRr~KGGkt~~IPk~iLw~f~~~~~~~ 166 (167)
+.|.+.-. +...+.++|. ||+ ..||+.-..+++.| |+|=. | +.++.-.|..+.+.|
T Consensus 155 v~Vrf~L~pdG~Vlsv~V~-SGd---~aLD~AAl~AVrrA-pfP~P--------P--~~~vye~~r~~~L~F 211 (222)
T 1tol_A 155 CTLRIKLAPDGMLLDIKPE-GGD---PALCQAALAAAKLA-KIPKP--------P--SQAVYEVFKNAPLDF 211 (222)
T ss_dssp EEEEEEECTTSCEEEEEEE-EEC---HHHHHHHHHHHHHC-CCCCC--------S--CHHHHHHHTTCEEEE
T ss_pred EEEEEEECCCCCEEEEEec-CCC---HHHHHHHHHHHHhC-CCCcC--------C--chHHHHHhccceeEe
Confidence 34444444 4455668888 886 78999999999999 98821 1 145666678887776
No 8
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=36.11 E-value=65 Score=23.47 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCCCeEEEEEEe-cChhhHHHHHHHHHHhhhcCCCCC
Q 031041 103 QDEDKIQVRVDL-TGDATQRVFDKVLTNLARSAPPIP 138 (167)
Q Consensus 103 ~dd~~IkirVdv-sG~~Tq~VFd~Vf~klv~aAqPiP 138 (167)
.|...+.++|.= ||. ..||+.-.+.++.|.|+|
T Consensus 62 ~dG~v~~v~v~~SSG~---~~lD~AAl~AV~ra~p~P 95 (129)
T 1lr0_A 62 PDGTITNASVSRSSGD---KPFDSSAVAAVRNVGRIP 95 (129)
T ss_dssp TTSBEEEEEEEECCSC---HHHHHHHHHHHHHHCBCG
T ss_pred CCCCEEEEEEeeCCCC---HHHHHHHHHHHHHhCCCC
Confidence 344445577653 464 689999999999898887
No 9
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=24.39 E-value=1e+02 Score=22.81 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=26.8
Q ss_pred eeeceeEEEEcC------CC----CeEEEEEEecChhhHHHHHHHHHH
Q 031041 92 TVKDAKIVVESQ------DE----DKIQVRVDLTGDATQRVFDKVLTN 129 (167)
Q Consensus 92 s~~d~~v~V~s~------dd----~~IkirVdvsG~~Tq~VFd~Vf~k 129 (167)
.+++++|.|+-+ ++ ..|.++|.+.|+.++.-++++...
T Consensus 92 ~~~~~~v~v~~~~~~~~~~~~~~f~~i~~~v~l~~~~~~e~~~~l~~~ 139 (166)
T 1lql_A 92 TINKLLMNVTGSRSTNPTDGYFGLREINLHWEIHSPNSETEIKEFIDF 139 (166)
T ss_dssp CCSEEEEEEEEEECSSCSSSCCSEEEEEEEEEEECSSCHHHHHHHHHH
T ss_pred CcceEEEEEEEEEcCccccCCCCeEEEEEEEEEcCCCCHHHHHHHHHH
Confidence 556777777664 22 258899999998888777777663
No 10
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=23.64 E-value=16 Score=33.37 Aligned_cols=23 Identities=39% Similarity=0.783 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhcCC---------CCCCceec
Q 031041 121 RVFDKVLTNLARSAP---------PIPGFRRE 143 (167)
Q Consensus 121 ~VFd~Vf~klv~aAq---------PiPGFRr~ 143 (167)
..-.+|...|-+.-| ||||||+-
T Consensus 276 fLIKrVV~~L~~E~P~lktF~TLSPIPGF~~W 307 (460)
T 2ygw_A 276 FLIKRVVKELQREFPHLGVFSSLSPIPGFTKW 307 (460)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECBC-CCHHHH
T ss_pred HHHHHHHHHHHHhCcCccceeecCCCccHHHH
Confidence 334455555555444 99999986
No 11
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=21.81 E-value=54 Score=21.80 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=4.7
Q ss_pred CCeEEEEEEecC
Q 031041 105 EDKIQVRVDLTG 116 (167)
Q Consensus 105 d~~IkirVdvsG 116 (167)
++.+.|.+||+|
T Consensus 6 ~~~~~v~~dlPG 17 (85)
T 3q9p_A 6 ADRWRVSLDVNH 17 (85)
T ss_dssp CCEEEEEEECTT
T ss_pred CCEEEEEEECCC
Confidence 333344444333
Done!