BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031042
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J6W|A Chain A, R164n Mutant Of The Runx1 Runt Domain
 pdb|2J6W|B Chain B, R164n Mutant Of The Runx1 Runt Domain
          Length = 140

 Score = 30.0 bits (66), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 119 NKYRFIDQGHSLRGKEFNLTLHWHVMPKTGKMFAN--KIVMSGYRLPEDYR 167
           N  RF+  G S RGK F LT+     P     + N  KI + G R P  +R
Sbjct: 87  NDLRFV--GRSGRGKSFTLTITVFTNPPQVATYHNAIKITVDGPREPRRHR 135


>pdb|3LB6|A Chain A, The Structure Of Il-13 In Complex With Il-13ralpha2
          Length = 132

 Score = 26.9 bits (58), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 17 TILALMCTIGSLSDNLNTPSPSAQI---EILNINWFQKQPHGNDEVSLTLNITADL 69
          T++AL C  G  S     PS + +    E++NI   QK P  N  +  ++N+TA +
Sbjct: 7  TVIALTCLGGFASPGPVPPSTALRELIEELVNITQNQKAPLCNGSMVWSINLTAGM 62


>pdb|3LB6|B Chain B, The Structure Of Il-13 In Complex With Il-13ralpha2
          Length = 132

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 17 TILALMCTIGSLSDNLNTPSPSAQI---EILNINWFQKQPHGNDEVSLTLNITADL 69
          T++AL C  G  S     PS + +    E++NI   QK P  N  +  ++N+TA +
Sbjct: 7  TVIALTCLGGFASPGPVPPSTALRELIEELVNITQNQKAPLCNGSMVWSINLTAGM 62


>pdb|3ESU|F Chain F, Crystal Structure Of Anthrax-Neutralizing Single-Chain
          Antibody 14b7
          Length = 250

 Score = 26.6 bits (57), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 19 LALMCTIGSLSDNLN---TPSPSAQIEILN-INWFQKQPHGNDEVSLTLNITADLQS 71
          + L+ +  SLS +L    T S  A  +I N +NW+Q++P G   V L +  T+ LQS
Sbjct: 5  IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGT--VKLLIYYTSRLQS 59


>pdb|4ACZ|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
           Bacteroides Thetaiotaomicron
          Length = 382

 Score = 26.2 bits (56), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 39  AQIEILNINWFQKQPHGNDEVSLTLNITADLQS 71
           A + +L++ W+ +  +GN  VSL L+  A + +
Sbjct: 115 ANVGVLSVTWWGESDYGNQSVSLLLDEAAKVGA 147


>pdb|4ACZ|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
           Bacteroides Thetaiotaomicron
 pdb|4AD0|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
           Bacteriodes Thetaiotaomicron In Complex With
           Bis-Tris-Propane
 pdb|4AD0|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
           Bacteriodes Thetaiotaomicron In Complex With
           Bis-Tris-Propane
 pdb|4AD0|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
           Bacteriodes Thetaiotaomicron In Complex With
           Bis-Tris-Propane
 pdb|4AD0|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
           Bacteriodes Thetaiotaomicron In Complex With
           Bis-Tris-Propane
          Length = 382

 Score = 26.2 bits (56), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 39  AQIEILNINWFQKQPHGNDEVSLTLNITADLQS 71
           A + +L++ W+ +  +GN  VSL L+  A + +
Sbjct: 115 ANVGVLSVTWWGESDYGNQSVSLLLDEAAKVGA 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,870,091
Number of Sequences: 62578
Number of extensions: 179993
Number of successful extensions: 340
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 13
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)