Query 031042
Match_columns 167
No_of_seqs 113 out of 228
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00116 signal peptidase; Pro 100.0 2.6E-65 5.6E-70 407.2 17.6 167 1-167 1-171 (185)
2 PF04573 SPC22: Signal peptida 100.0 6.5E-64 1.4E-68 398.7 19.2 167 1-167 1-175 (175)
3 KOG3372 Signal peptidase compl 100.0 4.4E-60 9.6E-65 370.6 16.0 167 1-167 1-175 (176)
4 PLN03160 uncharacterized prote 62.4 17 0.00037 29.8 5.0 22 29-50 59-80 (219)
5 PF12751 Vac7: Vacuolar segreg 49.6 39 0.00085 30.4 5.3 45 4-50 298-342 (387)
6 PRK13884 conjugal transfer pep 36.6 1.6E+02 0.0034 23.3 6.5 60 1-62 1-60 (178)
7 PF12911 OppC_N: N-terminal TM 33.7 82 0.0018 19.5 3.7 29 9-37 15-43 (56)
8 PRK13838 conjugal transfer pil 29.7 2.7E+02 0.0058 22.0 6.8 56 7-62 5-60 (176)
9 PF12984 DUF3868: Domain of un 26.7 1.6E+02 0.0035 21.6 4.7 36 96-131 60-99 (115)
10 PF14713 DUF4464: Domain of un 23.4 61 0.0013 27.2 2.1 13 96-108 220-232 (233)
11 KOG2111 Uncharacterized conser 22.5 79 0.0017 28.0 2.7 25 81-105 60-84 (346)
12 KOG3482 Small nuclear ribonucl 21.1 1.1E+02 0.0024 21.3 2.6 25 128-153 14-38 (79)
No 1
>PTZ00116 signal peptidase; Provisional
Probab=100.00 E-value=2.6e-65 Score=407.18 Aligned_cols=167 Identities=28% Similarity=0.416 Sum_probs=158.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCceEEEEEEeeeccC-CCCCcceEEEEEeecCCCccceeccc
Q 031042 1 MHSFGYRANALLTFAVTILALMCTIGSLSDNLN--TPSPSAQIEILNINWFQK-QPHGNDEVSLTLNITADLQSLFTWNT 77 (167)
Q Consensus 1 Mhs~~~R~n~v~~~~~~~l~~l~~~~~lss~~~--~~~p~~~v~~~~v~~~~~-~~~~~d~a~i~Fdl~aDLs~lFnWNT 77 (167)
|||+++|+|++++|+++|+++||++|++++.++ ..+|++++++.+|++++. +++++|+|.|+|||+|||+|+|||||
T Consensus 1 MhS~~~R~Nal~~f~~~vLa~l~~~~~~s~~f~~~~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNt 80 (185)
T PTZ00116 1 MDNVLNRLNVLSYSMALCFLILCLFNYGTSFYLFDEKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNL 80 (185)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccc
Confidence 999999999999999999999999999999987 667779999999999984 56789999999999999999999999
Q ss_pred eeEEEEEEEEEeCCCCCceeEEEeccccCCcccceecc-cccceeEEEeCCCCCCCceEEEEEEEEEEeeeeEeeeeeee
Q 031042 78 KQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQGHSLRGKEFNLTLHWHVMPKTGKMFANKIV 156 (167)
Q Consensus 78 KQvFvYl~AeY~t~~~~~nqvviWDkII~~k~~a~l~~-~~~~KY~~~D~~~~l~g~~vtl~L~wnv~P~vG~l~~~~~~ 156 (167)
|||||||+|||+|+++..|||+|||+||++|++|++.. +.++||++||+|++|||+++||+|+|||||++|.|+..+..
T Consensus 81 KqlFvyv~a~Y~t~~~~~n~v~iWD~Ii~~k~~A~l~~~~~~~KY~l~D~~~~Lrg~~vtl~L~wnv~P~~G~l~~~~~~ 160 (185)
T PTZ00116 81 KQLFLYVLVTYETPEKVKNEVIIQDYIITNKKQAKKTYKNFITKYSLKDYNNGLRNNNINLQVCYKYMPIVGLSRSYEGA 160 (185)
T ss_pred cEEEEEEEEEEcCCCCccccEEEEeeeecCcccceEeecccccceeEEeCCCCccCCceEEEEEEEEEecceeEeeeecc
Confidence 99999999999999999999999999999999999954 99999999999999999999999999999999999999888
Q ss_pred cceecCCCCCC
Q 031042 157 MSGYRLPEDYR 167 (167)
Q Consensus 157 ~~~~~lP~~Y~ 167 (167)
..+|+||+||+
T Consensus 161 ~~~f~~P~~Y~ 171 (185)
T PTZ00116 161 KISYKLPAEYF 171 (185)
T ss_pred ccceeChHHHH
Confidence 88999999985
No 2
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=100.00 E-value=6.5e-64 Score=398.73 Aligned_cols=167 Identities=44% Similarity=0.755 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEE-----EeeeccCCCCCcceEEEEEeecCCCccceec
Q 031042 1 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEIL-----NINWFQKQPHGNDEVSLTLNITADLQSLFTW 75 (167)
Q Consensus 1 Mhs~~~R~n~v~~~~~~~l~~l~~~~~lss~~~~~~p~~~v~~~-----~v~~~~~~~~~~d~a~i~Fdl~aDLs~lFnW 75 (167)
|||+++|+|++|+++++++++++++|++++++++++|++++.+. +.+.++...+++|+|.++|||+|||+|+|||
T Consensus 1 Mhs~~~R~N~vfs~~~~vl~~l~~~~~~s~~~~~~~~~~~i~v~~~~v~~~~~~~~~~~~~D~a~i~fdl~aDls~lfnW 80 (175)
T PF04573_consen 1 MHSFLSRLNAVFSFALTVLAFLAALIFLSSYFHPPSPSVSISVSNVQVRKSRDYGYSGKKKDYAKITFDLDADLSPLFNW 80 (175)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEEEecccccCCCCCceEEEEEEEeccCcccceee
Confidence 99999999999999999999999999999999999999877665 5666665567899999999999999999999
Q ss_pred cceeEEEEEEEEEeCCCCCceeEEEeccccCCcccceecc-cccceeEEEeCCCCCCC-ceEEEEEEEEEEeeeeEeeee
Q 031042 76 NTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQGHSLRG-KEFNLTLHWHVMPKTGKMFAN 153 (167)
Q Consensus 76 NTKQvFvYl~AeY~t~~~~~nqvviWDkII~~k~~a~l~~-~~~~KY~~~D~~~~l~g-~~vtl~L~wnv~P~vG~l~~~ 153 (167)
||||+||||+|||+|++++.||||||||||++||+|++.. +.++||+++|++++|+| ++++|+|+||+||++|.|+++
T Consensus 81 NtKq~Fvyv~A~Y~t~~~~~NevviWD~Ii~~~~~a~~~~~~~~~KY~~~d~~~~l~~~~~v~l~l~wnv~P~vG~l~~~ 160 (175)
T PF04573_consen 81 NTKQLFVYVTAEYETPKNPVNEVVIWDKIIRRKEDAVLNLKNVKSKYPFWDDGNGLRGNKNVTLTLHWNVMPWVGLLPRG 160 (175)
T ss_pred eeeEEEEEEEEEECCCCCCcceEEEehHhhcccchhhhhhhccccceeeECCCCcccCCceEEEEEEEEeecCEEEEEEE
Confidence 9999999999999999999999999999999999999855 89999999999999998 999999999999999999999
Q ss_pred eee-cceecCCCCCC
Q 031042 154 KIV-MSGYRLPEDYR 167 (167)
Q Consensus 154 ~~~-~~~~~lP~~Y~ 167 (167)
+.. ..+++||++|.
T Consensus 161 ~~~~~~~~~~P~~Y~ 175 (175)
T PF04573_consen 161 ETVGSSSFTFPSEYT 175 (175)
T ss_pred ecCCceeEECCCccC
Confidence 976 66999999994
No 3
>KOG3372 consensus Signal peptidase complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-60 Score=370.56 Aligned_cols=167 Identities=43% Similarity=0.715 Sum_probs=157.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----CCCceEEEEEEeeeccCCCCCcceEEEEEeecCCCccceec
Q 031042 1 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNT-----PSPSAQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTW 75 (167)
Q Consensus 1 Mhs~~~R~n~v~~~~~~~l~~l~~~~~lss~~~~-----~~p~~~v~~~~v~~~~~~~~~~d~a~i~Fdl~aDLs~lFnW 75 (167)
|||+.+|+|++++|+++++++||++|++++.|.+ +.|+..+++.++..|+.+++++|++.++|||+|||+++|||
T Consensus 1 M~tf~~R~nal~sf~~svlafl~a~~f~s~vf~~~~~~~~~~~~~i~irn~~~y~~~r~~~d~~~v~Fdl~aDLs~lF~W 80 (176)
T KOG3372|consen 1 MHTFGSRANALFSFTLSVLAFLCAACFLSTVFLNREVDTQNPVSRIKIRNVRDYGAQREKADEAFVTFDLSADLSSLFNW 80 (176)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeEEEeehhhhccccccCceeEEEeecccChHhhcCc
Confidence 9999999999999999999999999999999987 45667899999999999888999999999999999999999
Q ss_pred cceeEEEEEEEEEeCCCCCceeEEEeccccCCccccee-cccccceeEEEeCCCCC-CCceEEEEEEEEEEeeeeEeeee
Q 031042 76 NTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKF-SIHTSNKYRFIDQGHSL-RGKEFNLTLHWHVMPKTGKMFAN 153 (167)
Q Consensus 76 NTKQvFvYl~AeY~t~~~~~nqvviWDkII~~k~~a~l-~~~~~~KY~~~D~~~~l-~g~~vtl~L~wnv~P~vG~l~~~ 153 (167)
|||||||||+|||+|++|..|||++|||||.++|++++ .++.++||.++|+|++| .||+++|+|||||||++|+|++.
T Consensus 81 NtKQvFvYl~AeY~t~~n~~nQVvlWDkII~~~d~~~l~~~~~~sky~f~D~g~nl~~~kn~~~tLhwnV~P~~G~l~~~ 160 (176)
T KOG3372|consen 81 NTKQVFVYLVAEYSTKKNELNQVVLWDKIILRKDNAVLDGKDMSSKYYFFDDGNNLFGGKNVTFTLHWNVIPKVGLLRLV 160 (176)
T ss_pred ccceEEEEEEEEecCccccccceEEhhhhhcCcchhhhhhhccccceeEEecCCCccCCCceeEEEEEEeecCcceEEee
Confidence 99999999999999999999999999999999999998 45999999999999998 55999999999999999999999
Q ss_pred eeec-ceecCCCCCC
Q 031042 154 KIVM-SGYRLPEDYR 167 (167)
Q Consensus 154 ~~~~-~~~~lP~~Y~ 167 (167)
+..+ ..+++|..|.
T Consensus 161 ~~~g~~~~~fp~~y~ 175 (176)
T KOG3372|consen 161 QGSGTYVVPFPNTYT 175 (176)
T ss_pred cccCceeEECCcccc
Confidence 8655 4899999883
No 4
>PLN03160 uncharacterized protein; Provisional
Probab=62.40 E-value=17 Score=29.79 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=14.9
Q ss_pred hhccCCCCCceEEEEEEeeecc
Q 031042 29 SDNLNTPSPSAQIEILNINWFQ 50 (167)
Q Consensus 29 ss~~~~~~p~~~v~~~~v~~~~ 50 (167)
...|.+..|...+.-.++.++.
T Consensus 59 ~~vfrPk~P~~~v~~v~l~~~~ 80 (219)
T PLN03160 59 FTVFRVKDPVIKMNGVTVTKLE 80 (219)
T ss_pred eEEEEccCCeEEEEEEEEeeee
Confidence 4455677888777666666664
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=49.55 E-value=39 Score=30.43 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEEEeeecc
Q 031042 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQ 50 (167)
Q Consensus 4 ~~~R~n~v~~~~~~~l~~l~~~~~lss~~~~~~p~~~v~~~~v~~~~ 50 (167)
++.|+-.+ ..++++++|++.+++.-++...+|=.++.|.+|+..-
T Consensus 298 ~~~r~~~c--~~~~i~~lL~ig~~~gFv~AttKpL~~v~v~~I~NVl 342 (387)
T PF12751_consen 298 WFSRFASC--IYLSILLLLVIGFAIGFVFATTKPLTDVQVVSIQNVL 342 (387)
T ss_pred HHhhhhHH--HHHHHHHHHHHHHHHHhhhhcCcccccceEEEeeeee
Confidence 45555443 3344444444444444444556777777777665543
No 6
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=36.57 E-value=1.6e+02 Score=23.32 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEEEeeeccCCCCCcceEEEE
Q 031042 1 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLT 62 (167)
Q Consensus 1 Mhs~~~R~n~v~~~~~~~l~~l~~~~~lss~~~~~~p~~~v~~~~v~~~~~~~~~~d~a~i~ 62 (167)
|.....|+...+.++...+++++++.+...+..+.+++.-+.+=.+. ....++.|.+.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~T~S~P~glY~~~--~~~~~~Gd~V~f~ 60 (178)
T PRK13884 1 MSRILKRITAGVAVAGLAALLLAALGYAAGARVNTTKSIPVGLYWTS--SAPVEKGAYVLFC 60 (178)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEEECCCCCcceEEEEe--CCCCCCCCEEEEe
Confidence 44556677777776666666777666666676777776544332222 1223445665554
No 7
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=33.74 E-value=82 Score=19.52 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 031042 9 NALLTFAVTILALMCTIGSLSDNLNTPSP 37 (167)
Q Consensus 9 n~v~~~~~~~l~~l~~~~~lss~~~~~~p 37 (167)
|-..-.++.+++++++++.+..++.+.+|
T Consensus 15 nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 15 NKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 44444444555555555555555544433
No 8
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=29.74 E-value=2.7e+02 Score=22.00 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEEEeeeccCCCCCcceEEEE
Q 031042 7 RANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLT 62 (167)
Q Consensus 7 R~n~v~~~~~~~l~~l~~~~~lss~~~~~~p~~~v~~~~v~~~~~~~~~~d~a~i~ 62 (167)
|+.-+..++...+++++.+.+.-.+..+.+++.-+-+-.+....+.+++.|.+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~T~S~pig~y~~~~~~~~~~rGDiVvf~ 60 (176)
T PRK13838 5 RALLLLAVAAVAASGLAATAWIGGYRINLTPSEPLGLWRIEALDRPVAVGDLVFIC 60 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCceEEECCCCCEEEEEEEeccCCCCCCCcEEEEE
Confidence 34444443333344444444444555677777666555554333444556666654
No 9
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=26.69 E-value=1.6e+02 Score=21.60 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=18.0
Q ss_pred eeEEEeccccCCccccee----cccccceeEEEeCCCCCC
Q 031042 96 NQVSLWDAIIPAKEFAKF----SIHTSNKYRFIDQGHSLR 131 (167)
Q Consensus 96 nqvviWDkII~~k~~a~l----~~~~~~KY~~~D~~~~l~ 131 (167)
|+.++.=-++.++++... ..+.|.+|.+.+-...|.
T Consensus 60 ~~~l~ltPvL~s~~~~~~LP~V~I~Gr~r~~~y~R~~al~ 99 (115)
T PF12984_consen 60 NRSLILTPVLVSGEDSLELPPVVINGRNRYKVYQRNLALM 99 (115)
T ss_pred CCEEEEEeEEEcCCCEEECCCEEEechHHHHHHHHHHHhc
Confidence 555555555555444321 335666665554444443
No 10
>PF14713 DUF4464: Domain of unknown function (DUF4464)
Probab=23.44 E-value=61 Score=27.23 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=12.0
Q ss_pred eeEEEeccccCCc
Q 031042 96 NQVSLWDAIIPAK 108 (167)
Q Consensus 96 nqvviWDkII~~k 108 (167)
-||||+|.++++|
T Consensus 220 ~~vv~yDH~vRrk 232 (233)
T PF14713_consen 220 GQVVLYDHVVRRK 232 (233)
T ss_pred CEEEEEeeeeeec
Confidence 6999999999986
No 11
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=22.52 E-value=79 Score=28.00 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEEEEEeCCCCCceeEEEecccc
Q 031042 81 FIFVAAEYETPKNALNQVSLWDAII 105 (167)
Q Consensus 81 FvYl~AeY~t~~~~~nqvviWDkII 105 (167)
++-|+-.+..++.+.|.|+|||..-
T Consensus 60 ~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 60 YLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eEEEecCCCCCCCCCceEEEEeccc
Confidence 4556666766778899999999543
No 12
>KOG3482 consensus Small nuclear ribonucleoprotein (snRNP) SMF [RNA processing and modification]
Probab=21.12 E-value=1.1e+02 Score=21.34 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.6
Q ss_pred CCCCCceEEEEEEEEEEeeeeEeeee
Q 031042 128 HSLRGKEFNLTLHWHVMPKTGKMFAN 153 (167)
Q Consensus 128 ~~l~g~~vtl~L~wnv~P~vG~l~~~ 153 (167)
++|.|+.|-.+|.|. |-|=|.|..-
T Consensus 14 ~~l~gk~V~vkLKwg-~eYkG~Lvsv 38 (79)
T KOG3482|consen 14 NGLTGKPVLVKLKWG-QEYKGTLVSV 38 (79)
T ss_pred hhccCCeEEEEEecC-cEEEEEEEEe
Confidence 568999999999999 8899988754
Done!