Query 031042
Match_columns 167
No_of_seqs 113 out of 228
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 13:08:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izx_A Structural protein VP3; 13.8 64 0.0022 31.1 1.5 13 71-83 209-221 (1058)
2 2f8e_A VPG protein; RNA-depend 13.2 45 0.0015 17.6 0.1 20 145-164 2-21 (26)
3 2lru_A Serine/threonine-protei 15.9 47 0.0016 23.3 0.0 23 50-72 39-61 (98)
4 2zb6_A Hemagglutinin protein; 8.8 5.1E+02 0.018 22.6 5.3 59 79-154 375-436 (481)
5 2jrw_A Cyclic extended PEP.1; 8.5 1.1E+02 0.0039 15.8 0.7 8 160-167 5-12 (26)
6 2kr7_A FKBP-type peptidyl-prol 7.9 2.5E+02 0.0084 20.2 2.7 24 117-140 117-140 (151)
7 1dqu_A Isocitrate lyase; beta 7.9 82 0.0028 28.3 -0.0 13 65-77 420-432 (538)
8 1q5l_A Chaperone protein DNAK; 7.5 3.1E+02 0.01 19.3 3.0 15 54-68 95-109 (135)
9 3kcw_A Immunomodulatory protei 7.5 2.8E+02 0.0096 19.8 2.6 16 74-89 88-111 (134)
10 2iub_A CORA, divalent cation t 7.4 4.6E+02 0.016 21.3 4.5 30 4-33 295-324 (363)
No 1
>3izx_A Structural protein VP3; cytoplasmic polyhedrosis virus, 3D reconstruction, cryoem, F model; 3.10A {Bombyx mori cypovirus 1} PDB: 3iz3_A 3j17_A* 3cnf_T
Probab=13.78 E-value=64 Score=31.08 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=11.6
Q ss_pred cceeccceeEEEE
Q 031042 71 SLFTWNTKQLFIF 83 (167)
Q Consensus 71 ~lFnWNTKQvFvY 83 (167)
.-|+||+++.|+|
T Consensus 209 ~twh~n~~HtF~Y 221 (1058)
T 3izx_A 209 SSWHWNVLHTFHY 221 (1058)
T ss_dssp SSCGGGCCEEEEE
T ss_pred eeeecCCceEEEe
Confidence 4699999999997
No 2
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=13.15 E-value=45 Score=17.63 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=11.8
Q ss_pred eeeeEeeeeeeecceecCCC
Q 031042 145 PKTGKMFANKIVMSGYRLPE 164 (167)
Q Consensus 145 P~vG~l~~~~~~~~~~~lP~ 164 (167)
|+.|.|.+.+--.-..++|.
T Consensus 2 pyagplerq~plkvkak~p~ 21 (26)
T 2f8e_A 2 PYAGPLERQRPLKVKAKLPQ 21 (26)
T ss_pred CcCCchhhcCcceeeecccc
Confidence 78888877653233445553
No 3
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=15.92 E-value=47 Score=23.26 Aligned_cols=23 Identities=9% Similarity=0.315 Sum_probs=17.5
Q ss_pred cCCCCCcceEEEEEeecCCCccc
Q 031042 50 QKQPHGNDEVSLTLNITADLQSL 72 (167)
Q Consensus 50 ~~~~~~~d~a~i~Fdl~aDLs~l 72 (167)
+++.+.++...|.|||+.|-...
T Consensus 39 ~gk~KeNeaIeF~Fdle~Dta~e 61 (98)
T 2lru_A 39 KGKYKDNEAIEFSFDLERDVPED 61 (98)
Confidence 45567788899999999886543
No 4
>2zb6_A Hemagglutinin protein; beta propeller, envelope protein, membrane, transmembrane, virion, viral protein; HET: NAG; 2.60A {Measles virus strain edmonston-b} PDB: 2zb5_A* 3alz_A* 2rkc_A* 3inb_A*
Probab=8.81 E-value=5.1e+02 Score=22.63 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=34.5
Q ss_pred eEEEEEEEEEeCCCCCceeEEEeccccCCccccee-cc--cccceeEEEeCCCCCCCceEEEEEEEEEEeeeeEeeeee
Q 031042 79 QLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKF-SI--HTSNKYRFIDQGHSLRGKEFNLTLHWHVMPKTGKMFANK 154 (167)
Q Consensus 79 QvFvYl~AeY~t~~~~~nqvviWDkII~~k~~a~l-~~--~~~~KY~~~D~~~~l~g~~vtl~L~wnv~P~vG~l~~~~ 154 (167)
|=|=|++|.|.++ |-|.|.+ .. ..|+--++.-..-..+|+.+.| +-.-+||-+-|+=++
T Consensus 375 ~d~~YV~ATYD~S---------------R~eHAIVYYVYdt~RssSY~YPfRL~~KG~P~~L--rIECFpW~~kLWChh 436 (481)
T 2zb6_A 375 QDLQYVLATYDTS---------------RVEHAVVYYVYSPSRSFSYFYPFRLPIKGVPIEL--QVECFTWDQKLWCRH 436 (481)
T ss_dssp SSCCEEEEEEETT---------------STTCCEEEEEECSSCEEEEECCSCCCCCSCCCEE--EEEEEECSSSEEEEE
T ss_pred CceeeEEEEeecc---------------ccceeEEEEEecCccceeeEeeEEeecCCCccEE--EEEEEeccCceeEEe
Confidence 3467999999985 4455554 11 2332222222233457777655 456788888877664
No 5
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=8.48 E-value=1.1e+02 Score=15.81 Aligned_cols=8 Identities=50% Similarity=0.899 Sum_probs=6.1
Q ss_pred ecCCCCCC
Q 031042 160 YRLPEDYR 167 (167)
Q Consensus 160 ~~lP~~Y~ 167 (167)
.+||.+||
T Consensus 5 mtlpenyf 12 (26)
T 2jrw_A 5 MTLPENYF 12 (26)
T ss_dssp CCCSSSSC
T ss_pred cccchhhc
Confidence 57888886
No 6
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=7.93 E-value=2.5e+02 Score=20.22 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=18.3
Q ss_pred ccceeEEEeCCCCCCCceEEEEEE
Q 031042 117 TSNKYRFIDQGHSLRGKEFNLTLH 140 (167)
Q Consensus 117 ~~~KY~~~D~~~~l~g~~vtl~L~ 140 (167)
....--..|..+.|.|++++|.++
T Consensus 117 v~~~~v~vD~NHPLAG~~L~F~v~ 140 (151)
T 2kr7_A 117 FSATHVMVDYNHPLAGKTLAFRFK 140 (151)
T ss_dssp ECSSEEEEEECCTTSCCCEEEEEE
T ss_pred ECCCEEEEECCCcCCCCEEEEEEE
Confidence 333445679999999999998875
No 7
>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP: c.1.12.7
Probab=7.90 E-value=82 Score=28.34 Aligned_cols=13 Identities=23% Similarity=0.731 Sum_probs=10.6
Q ss_pred ecCCCccceeccc
Q 031042 65 ITADLQSLFTWNT 77 (167)
Q Consensus 65 l~aDLs~lFnWNT 77 (167)
|-+++||.|||..
T Consensus 420 LaYN~SPSFnW~~ 432 (538)
T 1dqu_A 420 LAYNLSPSFNWKK 432 (538)
T ss_dssp EEEECCSSSCGGG
T ss_pred EEecCCcchhhhh
Confidence 4456899999988
No 8
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=7.51 E-value=3.1e+02 Score=19.33 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=9.4
Q ss_pred CCcceEEEEEeecCC
Q 031042 54 HGNDEVSLTLNITAD 68 (167)
Q Consensus 54 ~~~d~a~i~Fdl~aD 68 (167)
++.....++|++|+|
T Consensus 95 ~G~~~IeVtf~iD~n 109 (135)
T 1q5l_A 95 RGMPQIEVTFDIDAD 109 (135)
T ss_dssp SSSCCEEEEEEECTT
T ss_pred CceeEEEEEEEECCC
Confidence 444556777777665
No 9
>3kcw_A Immunomodulatory protein; FNIII, immune system; 2.00A {Ganoderma microsporum} PDB: 3f3h_A
Probab=7.45 E-value=2.8e+02 Score=19.79 Aligned_cols=16 Identities=31% Similarity=0.682 Sum_probs=11.2
Q ss_pred eccceeEEE--------EEEEEEe
Q 031042 74 TWNTKQLFI--------FVAAEYE 89 (167)
Q Consensus 74 nWNTKQvFv--------Yl~AeY~ 89 (167)
+=||-|+|| |+.|++.
T Consensus 88 DT~TIQV~VvdPdtgn~fiiAqWn 111 (134)
T 3kcw_A 88 DTNTIQVYVIDPDTGNNFIVAQWN 111 (134)
T ss_dssp TTSCEEEEEECTTTCCEEEEEEEC
T ss_pred cCceEEEEEEcCCCCCceEeeehh
Confidence 458889988 5666654
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=7.44 E-value=4.6e+02 Score=21.32 Aligned_cols=30 Identities=7% Similarity=0.187 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 031042 4 FGYRANALLTFAVTILALMCTIGSLSDNLN 33 (167)
Q Consensus 4 ~~~R~n~v~~~~~~~l~~l~~~~~lss~~~ 33 (167)
..+|.|.+.-..+.+.++++-..++++++.
T Consensus 295 is~~~N~imk~LTiit~IflP~T~IaGiyG 324 (363)
T 2iub_A 295 VSNKTNEVMKVLTIIATIFMPLTFIAGIYG 324 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467889998888888888888888888763
Done!