BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031045
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 70/110 (63%), Gaps = 13/110 (11%)
Query: 70 SEKYDPCTEKHSVVYFNQPEVQKALHVIPAVALA-KWETC------------RIVLDIYH 116
+ YDPCTE++S Y+N+ +VQ ALH A+ W TC R +L IY
Sbjct: 1 TGSYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYR 60
Query: 117 ELIHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWYDEGQVG 166
ELI +GLRIW+FSGDTDAV+P+T+ RYSI AL LPT W WYD+ +VG
Sbjct: 61 ELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVG 110
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 69/108 (63%), Gaps = 13/108 (12%)
Query: 72 KYDPCTEKHSVVYFNQPEVQKALHVIPAVALA-KWETC------------RIVLDIYHEL 118
YDPCTE++S Y+N+ +VQ ALH A+ W TC R +L IY EL
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 119 IHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWYDEGQVG 166
I +GLRIW+FSGDTDAV+P+T+ RYSI AL LPT W WYD+ +VG
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVG 108
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 69/108 (63%), Gaps = 13/108 (12%)
Query: 72 KYDPCTEKHSVVYFNQPEVQKALHVIPAVALA-KWETC------------RIVLDIYHEL 118
YDPCTE++S Y+N+ +VQ ALH A+ W TC R +L IY EL
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 119 IHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWYDEGQVG 166
I +GLRIW+FSGDTDAV+P+T+ RYSI AL LPT W WYD+ +VG
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVG 108
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 69/108 (63%), Gaps = 13/108 (12%)
Query: 72 KYDPCTEKHSVVYFNQPEVQKALHVIPAVALA-KWETC------------RIVLDIYHEL 118
YDPCTE++S Y+N+ +VQ ALH A+ W TC R +L IY EL
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 119 IHSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWYDEGQVG 166
I +GLRIW+FSGDTDAV+P+T+ RYSI AL LPT W WYD+ +VG
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVG 108
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 16/110 (14%)
Query: 73 YDPCTEKHSVVYFNQPEVQKALHV-IPAVALAKWETCRI------------VLDIYHELI 119
YDPC +S+ Y N PEVQ ALH + + W C +L +Y ELI
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 120 HSGLRIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAWY---DEGQVG 166
+GLR+W++SGDTD+V+PV+S R S+ AL LP W WY E +VG
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVG 113
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CTASV 53
VGN L DDYHDY+G F+FWW+ G++SDDTY++LK C ++SFIHPS C A+
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 238
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CTASV 53
VGN L DDYHDY+G F+FWW+ G++SDDTY++LK C ++SFIHPS C A+
Sbjct: 180 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 234
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CTASV 53
VGN L DDYHDY+G F+FWW+ G++SDDTY++LK C ++SFIHPS C A+
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 238
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 1 MQVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CTASV 53
VGN L DDYHDY+G F+FWW+ G++SDDTY++LK C ++SFIHPS C A+
Sbjct: 179 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 233
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 3 VGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPS--CT 50
V + LT+D+ D +G+F+ WW GLISD+T +C SF+HP+ CT
Sbjct: 186 VSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECT 235
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 75 PCTEKHSV-VYFNQPEVQKALHVIPAVALAKWETCRIVLDIYHELIHSGL---------- 123
PCT + Y N P V+KAL++ L +W+ C ++++ + ++ +
Sbjct: 302 PCTNTTAASTYLNNPYVRKALNI--PEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 359
Query: 124 ---RIWMFSGDTDAVIPVTSARYSIDALNLPTVKPWRAW 159
+I +++GD D + +D+LN R W
Sbjct: 360 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPW 398
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 75 PCTEKHSV-VYFNQPEVQKALHVIPAVALAKWETCRIVLDIYHELIHSGL---------- 123
PCT + Y N P V+KAL++ L +W+ C ++++ + ++ +
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNI--PEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 61
Query: 124 ---RIWMFSGDTDAVIPVTSARYSIDALNLPT---VKPWRAWY-DEGQ 164
+I +++GD D + +D+LN +PW Y D G+
Sbjct: 62 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGE 109
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 36 KLLCDYESFIHPSCTASVSQSNRLLKRMHVVGHASEKYDPCTEKHSVVYFNQPEVQ 91
K+L D F++P + +V L++ + H ++ D EK V F Q EV+
Sbjct: 341 KMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKM-VKVFKQAEVE 395
>pdb|3MX9|A Chain A, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
pdb|3MXA|A Chain A, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
Length = 362
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 9 DDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPSCTASVSQSNRLLKRMHVVGH 68
D D +G+ + + +G +SD ++K L ++ + + P Q+N +LK + +
Sbjct: 247 DKLVDEIGV-GYVYDSGSVSDYRLSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPS 305
Query: 69 ASEKYDP----CTEKHSVVYFNQPEVQKALHVIPAVALAKWETCRIVLDIYHE 117
A E D CT + N + +K ET R VLD E
Sbjct: 306 AKESPDKFLEVCTWVDQIAALNDSKTRKTTS----------ETVRAVLDSLSE 348
>pdb|3MXB|B Chain B, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
pdb|3MXB|S Chain S, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
Length = 173
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 9 DDYHDYLGLFQFWWSAGLISDDTYKQLKLLCDYESFIHPSCTASVSQSNRLLKRMHVVGH 68
D D +G+ + + +G +SD ++K L ++ + + P Q+N +LK + +
Sbjct: 57 DKLVDEIGV-GYVYDSGSVSDYRLSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPS 115
Query: 69 ASEKYDP----CTEKHSVVYFNQPEVQKALHVIPAVALAKWETCRIVLDIYHE 117
A E D CT + N + +K ET R VLD E
Sbjct: 116 AKESPDKFLEVCTWVDQIAALNDSKTRKTTS----------ETVRAVLDSLSE 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,406,800
Number of Sequences: 62578
Number of extensions: 207602
Number of successful extensions: 537
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 21
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)