Query 031046
Match_columns 166
No_of_seqs 158 out of 1425
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10293 acyl-CoA esterase; Pr 100.0 1.9E-28 4.2E-33 172.6 17.2 118 40-161 19-136 (136)
2 PRK10254 thioesterase; Provisi 100.0 5.2E-28 1.1E-32 170.3 18.4 118 40-161 19-136 (137)
3 PRK11688 hypothetical protein; 100.0 3E-26 6.4E-31 164.9 18.5 132 11-160 6-153 (154)
4 TIGR00369 unchar_dom_1 unchara 99.9 1.7E-26 3.6E-31 158.9 15.7 116 41-160 2-117 (117)
5 PLN02322 acyl-CoA thioesterase 99.9 3.5E-26 7.7E-31 163.3 17.8 121 38-161 9-134 (154)
6 TIGR02286 PaaD phenylacetic ac 99.9 1.2E-25 2.7E-30 154.0 16.4 109 49-161 6-114 (114)
7 KOG3328 HGG motif-containing t 99.9 5.3E-26 1.1E-30 158.3 13.3 124 41-166 22-145 (148)
8 COG2050 PaaI HGG motif-contain 99.9 3.2E-25 6.9E-30 157.3 16.5 121 41-164 20-140 (141)
9 cd03443 PaaI_thioesterase PaaI 99.9 8.9E-21 1.9E-25 128.7 16.4 109 49-159 4-112 (113)
10 TIGR02447 yiiD_Cterm thioester 99.9 7.5E-21 1.6E-25 134.4 15.8 115 41-162 8-138 (138)
11 PRK10694 acyl-CoA esterase; Pr 99.8 8.5E-18 1.8E-22 117.9 14.0 108 55-164 8-123 (133)
12 COG1607 Acyl-CoA hydrolase [Li 99.8 1.9E-17 4E-22 118.1 15.6 108 55-164 10-122 (157)
13 PF14539 DUF4442: Domain of un 99.8 3.8E-17 8.3E-22 114.6 13.5 109 49-160 21-132 (132)
14 cd03442 BFIT_BACH Brown fat-in 99.7 1.9E-16 4.1E-21 108.8 15.5 106 55-162 4-114 (123)
15 PF03061 4HBT: Thioesterase su 99.7 4.5E-16 9.7E-21 99.0 11.5 79 73-152 1-79 (79)
16 cd00556 Thioesterase_II Thioes 99.6 6.2E-15 1.4E-19 97.7 10.5 85 73-159 14-98 (99)
17 PRK04424 fatty acid biosynthes 99.6 4.4E-13 9.5E-18 99.1 17.9 104 50-160 76-181 (185)
18 cd00586 4HBT 4-hydroxybenzoyl- 99.5 1.9E-12 4.2E-17 86.1 14.1 100 61-161 3-109 (110)
19 PLN02647 acyl-CoA thioesterase 99.4 1.1E-11 2.3E-16 102.0 17.2 108 54-163 286-403 (437)
20 PF09500 YiiD_Cterm: Putative 99.4 7.8E-12 1.7E-16 88.4 13.9 112 43-161 16-143 (144)
21 PLN02647 acyl-CoA thioesterase 99.4 9.4E-12 2E-16 102.4 15.3 113 51-163 80-211 (437)
22 KOG4781 Uncharacterized conser 99.4 6E-12 1.3E-16 93.9 10.4 95 49-144 117-211 (237)
23 cd03440 hot_dog The hotdog fol 99.3 3.3E-10 7.1E-15 71.7 14.3 97 61-158 3-99 (100)
24 PRK10800 acyl-CoA thioesterase 99.1 7E-09 1.5E-13 72.2 15.2 103 61-164 5-114 (130)
25 cd03445 Thioesterase_II_repeat 99.1 1.4E-09 3E-14 71.9 10.9 80 72-159 14-93 (94)
26 COG4109 Predicted transcriptio 99.1 1.6E-09 3.4E-14 85.8 12.3 113 41-160 318-430 (432)
27 TIGR02799 thio_ybgC tol-pal sy 99.0 1.8E-08 4E-13 69.4 13.9 101 61-163 3-111 (126)
28 PF13622 4HBT_3: Thioesterase- 99.0 1.2E-08 2.6E-13 78.6 12.7 82 73-162 9-90 (255)
29 TIGR00051 acyl-CoA thioester h 99.0 4.6E-08 1E-12 66.3 13.1 99 63-162 2-107 (117)
30 cd03449 R_hydratase (R)-hydrat 98.9 6.9E-08 1.5E-12 66.5 12.1 81 73-159 45-127 (128)
31 COG0824 FcbC Predicted thioest 98.9 2E-07 4.4E-12 65.7 14.2 104 59-164 6-116 (137)
32 PF13279 4HBT_2: Thioesterase- 98.8 7.1E-07 1.5E-11 61.0 14.3 98 66-164 2-107 (121)
33 cd01288 FabZ FabZ is a 17kD be 98.8 2.1E-06 4.7E-11 59.4 16.3 109 50-160 12-130 (131)
34 PRK07531 bifunctional 3-hydrox 98.8 4.1E-07 8.8E-12 76.8 14.9 106 58-164 345-456 (495)
35 PRK00006 fabZ (3R)-hydroxymyri 98.7 6.3E-06 1.4E-10 58.5 16.7 110 50-161 27-145 (147)
36 COG5496 Predicted thioesterase 98.6 3E-06 6.5E-11 58.0 13.5 91 73-165 28-118 (130)
37 TIGR00189 tesB acyl-CoA thioes 98.6 3.9E-07 8.6E-12 71.0 9.8 78 74-159 21-98 (271)
38 KOG2763 Acyl-CoA thioesterase 98.6 9E-07 1.9E-11 70.9 11.1 89 53-143 194-283 (357)
39 cd03455 SAV4209 SAV4209 is a S 98.4 8.2E-06 1.8E-10 56.2 11.8 77 75-158 45-122 (123)
40 PRK10526 acyl-CoA thioesterase 98.4 6.1E-06 1.3E-10 65.1 11.1 99 49-160 12-110 (286)
41 cd03441 R_hydratase_like (R)-h 98.4 1.3E-05 2.7E-10 54.9 11.2 82 72-158 41-126 (127)
42 cd03447 FAS_MaoC FAS_MaoC, the 98.3 2E-05 4.4E-10 54.7 11.7 81 74-159 43-124 (126)
43 PLN02868 acyl-CoA thioesterase 98.2 1.2E-05 2.7E-10 66.4 10.4 102 49-161 136-237 (413)
44 cd03446 MaoC_like MoaC_like 98.2 2.8E-05 6.1E-10 54.4 10.2 80 75-159 52-139 (140)
45 cd03453 SAV4209_like SAV4209_l 98.2 6E-05 1.3E-09 52.1 11.6 78 74-158 45-126 (127)
46 TIGR01750 fabZ beta-hydroxyacy 98.2 0.0004 8.6E-09 48.7 15.9 108 50-159 20-139 (140)
47 cd00493 FabA_FabZ FabA/Z, beta 98.2 0.00059 1.3E-08 46.9 16.2 107 50-158 11-129 (131)
48 PRK13692 (3R)-hydroxyacyl-ACP 98.2 4.8E-05 1.1E-09 54.9 11.0 61 103-164 84-148 (159)
49 cd03451 FkbR2 FkbR2 is a Strep 98.2 3.5E-05 7.5E-10 54.4 10.0 85 73-162 53-144 (146)
50 cd01289 FabA_like Domain of un 98.1 0.00092 2E-08 47.1 16.8 109 50-160 18-136 (138)
51 PLN02370 acyl-ACP thioesterase 98.0 0.0005 1.1E-08 56.8 15.7 107 58-164 139-258 (419)
52 cd03454 YdeM YdeM is a Bacillu 98.0 0.00012 2.7E-09 51.3 10.7 52 108-160 81-139 (140)
53 cd03452 MaoC_C MaoC_C The C-t 98.0 0.0001 2.2E-09 52.1 9.9 82 74-161 51-139 (142)
54 PRK08190 bifunctional enoyl-Co 97.9 0.00027 5.9E-09 59.4 12.7 82 74-161 59-142 (466)
55 PRK13691 (3R)-hydroxyacyl-ACP 97.9 0.00053 1.1E-08 49.9 12.5 56 106-162 87-146 (166)
56 cd03444 Thioesterase_II_repeat 97.9 0.00065 1.4E-08 45.5 11.6 83 74-157 15-101 (104)
57 PRK13188 bifunctional UDP-3-O- 97.8 0.0029 6.3E-08 53.0 16.9 111 50-162 341-461 (464)
58 PF07977 FabA: FabA-like domai 97.8 0.0042 9.1E-08 43.5 15.2 104 50-155 12-138 (138)
59 COG0764 FabA 3-hydroxymyristoy 97.7 0.0083 1.8E-07 42.7 15.6 105 57-163 33-146 (147)
60 PF01643 Acyl-ACP_TE: Acyl-ACP 97.7 0.0035 7.7E-08 48.7 14.8 104 61-165 6-123 (261)
61 cd01287 FabA FabA, beta-hydrox 97.6 0.011 2.3E-07 42.3 15.9 103 57-161 27-147 (150)
62 KOG3016 Acyl-CoA thioesterase 97.5 0.0018 4E-08 50.6 10.0 103 49-160 14-116 (294)
63 COG2030 MaoC Acyl dehydratase 97.4 0.0043 9.3E-08 44.7 11.3 56 106-162 97-156 (159)
64 TIGR00189 tesB acyl-CoA thioes 97.4 0.0029 6.4E-08 49.2 10.6 84 74-158 181-268 (271)
65 cd03450 NodN NodN (nodulation 97.3 0.0073 1.6E-07 43.1 10.9 84 74-160 57-147 (149)
66 COG1946 TesB Acyl-CoA thioeste 97.3 0.00097 2.1E-08 52.2 6.4 82 72-161 30-111 (289)
67 PRK13693 (3R)-hydroxyacyl-ACP 97.2 0.011 2.4E-07 41.8 11.3 80 73-159 54-140 (142)
68 KOG2763 Acyl-CoA thioesterase 97.2 0.0066 1.4E-07 49.0 11.0 99 65-163 15-127 (357)
69 PRK05174 3-hydroxydecanoyl-(ac 97.2 0.054 1.2E-06 39.6 17.4 98 58-157 54-161 (172)
70 cd03448 HDE_HSD HDE_HSD The R 97.2 0.0093 2E-07 41.1 9.9 72 74-154 45-116 (122)
71 PF01575 MaoC_dehydratas: MaoC 97.1 0.0064 1.4E-07 41.6 8.8 56 73-132 50-105 (122)
72 PF13622 4HBT_3: Thioesterase- 97.1 0.0046 9.9E-08 47.5 8.8 78 80-159 174-254 (255)
73 PF13452 MaoC_dehydrat_N: N-te 97.0 0.005 1.1E-07 42.6 7.5 52 101-153 73-131 (132)
74 TIGR01749 fabA beta-hydroxyacy 96.9 0.089 1.9E-06 38.4 15.6 97 58-156 51-157 (169)
75 PRK10526 acyl-CoA thioesterase 96.9 0.029 6.3E-07 44.3 11.9 87 74-161 192-283 (286)
76 TIGR02278 PaaN-DH phenylacetic 96.8 0.01 2.2E-07 52.1 9.1 94 61-160 552-661 (663)
77 PLN02868 acyl-CoA thioesterase 96.5 0.023 4.9E-07 47.1 9.1 82 74-156 325-409 (413)
78 COG1946 TesB Acyl-CoA thioeste 96.4 0.03 6.5E-07 44.0 8.8 87 74-161 192-283 (289)
79 PRK11563 bifunctional aldehyde 96.4 0.021 4.6E-07 50.3 8.8 94 61-160 564-673 (675)
80 PLN02864 enoyl-CoA hydratase 96.4 0.069 1.5E-06 42.7 10.8 91 60-159 205-304 (310)
81 PF02551 Acyl_CoA_thio: Acyl-C 96.2 0.043 9.3E-07 38.2 7.5 81 75-155 45-127 (131)
82 PLN02864 enoyl-CoA hydratase 95.1 0.26 5.6E-06 39.4 9.5 59 103-161 94-156 (310)
83 PF14765 PS-DH: Polyketide syn 95.1 1.2 2.6E-05 34.6 13.5 99 57-160 182-287 (295)
84 PF03756 AfsA: A-factor biosyn 95.0 0.73 1.6E-05 31.8 14.9 102 56-159 19-131 (132)
85 KOG3016 Acyl-CoA thioesterase 95.0 0.56 1.2E-05 37.0 10.6 81 73-154 207-291 (294)
86 PF01643 Acyl-ACP_TE: Acyl-ACP 92.4 3.3 7.1E-05 32.1 10.9 97 56-159 163-260 (261)
87 COG3884 FatA Acyl-ACP thioeste 90.9 3.3 7.1E-05 31.8 8.9 60 103-164 56-115 (250)
88 COG3884 FatA Acyl-ACP thioeste 82.5 9.4 0.0002 29.3 7.3 79 63-154 157-235 (250)
89 TIGR02813 omega_3_PfaA polyket 82.3 8.5 0.00018 39.4 8.8 53 108-161 2521-2573(2582)
90 PLN02370 acyl-ACP thioesterase 76.7 44 0.00096 28.1 12.8 96 60-162 303-404 (419)
91 COG3777 Uncharacterized conser 64.3 31 0.00068 26.8 6.1 87 58-157 185-272 (273)
92 PF04775 Bile_Hydr_Trans: Acyl 58.2 46 0.00099 22.8 5.7 36 115-150 11-46 (126)
93 PF01835 A2M_N: MG2 domain; I 47.8 71 0.0015 20.3 6.1 39 117-156 12-55 (99)
94 PF10648 Gmad2: Immunoglobulin 45.9 79 0.0017 20.3 5.2 43 110-157 3-49 (88)
95 PF11684 DUF3280: Protein of u 40.8 1.3E+02 0.0028 21.2 6.0 40 119-158 80-119 (140)
96 PF12988 DUF3872: Domain of un 37.1 38 0.00082 23.8 2.6 27 107-133 34-61 (137)
97 TIGR00074 hypC_hupF hydrogenas 34.1 86 0.0019 19.6 3.7 24 103-126 23-46 (76)
98 cd04316 ND_PkAspRS_like_N ND_P 32.9 87 0.0019 20.5 3.9 33 114-149 7-41 (108)
99 TIGR03786 strep_pil_rpt strept 31.5 1.2E+02 0.0026 18.2 4.4 25 132-156 29-53 (64)
100 KOG1206 Peroxisomal multifunct 30.4 1.6E+02 0.0034 23.0 5.1 46 73-125 191-236 (272)
101 PF15490 Ten1_2: Telomere-capp 29.7 1.9E+02 0.004 19.8 7.2 40 105-144 52-94 (118)
102 smart00634 BID_1 Bacterial Ig- 28.3 1E+02 0.0022 19.5 3.4 6 145-150 59-64 (92)
103 PF12508 DUF3714: Protein of u 27.6 2.1E+02 0.0045 21.5 5.4 30 119-149 100-129 (200)
104 COG3510 CmcI Cephalosporin hyd 27.5 29 0.00062 26.2 0.8 49 62-116 65-113 (237)
105 PRK04143 hypothetical protein; 26.2 2.2E+02 0.0047 22.4 5.5 25 2-26 42-66 (264)
106 PF11138 DUF2911: Protein of u 25.8 1.7E+02 0.0037 20.8 4.4 58 106-165 13-77 (145)
107 PF04076 BOF: Bacterial OB fol 25.3 2.1E+02 0.0045 19.0 4.6 27 114-141 73-99 (103)
108 PF11974 MG1: Alpha-2-macroglo 25.0 1.2E+02 0.0025 19.8 3.3 33 122-155 15-48 (97)
109 PF11906 DUF3426: Protein of u 24.1 2.5E+02 0.0054 19.4 9.6 48 108-156 55-106 (149)
110 cd04317 EcAspRS_like_N EcAspRS 23.8 1.4E+02 0.003 20.4 3.7 34 113-149 8-43 (135)
111 PF01336 tRNA_anti-codon: OB-f 23.6 1.4E+02 0.003 17.4 3.3 23 112-134 41-63 (75)
112 PF08670 MEKHLA: MEKHLA domain 22.7 1.8E+02 0.0039 20.7 4.1 29 126-154 109-139 (148)
113 smart00675 DM11 Domains in hyp 22.6 3.1E+02 0.0066 19.9 5.5 35 100-134 40-74 (164)
114 COG0133 TrpB Tryptophan syntha 21.6 54 0.0012 26.8 1.4 60 28-87 228-290 (396)
115 PF10029 DUF2271: Predicted pe 21.3 3E+02 0.0064 19.2 5.9 44 99-142 76-120 (139)
116 PF04989 CmcI: Cephalosporin h 21.1 62 0.0013 24.4 1.5 43 65-113 31-73 (206)
117 PF13313 DUF4082: Domain of un 20.6 3.3E+02 0.0071 19.5 7.3 50 104-157 17-66 (149)
118 PF10862 FcoT: FcoT-like thioe 20.6 3.4E+02 0.0073 19.6 8.5 46 103-149 96-148 (157)
119 COG2867 Oligoketide cyclase/li 20.4 2.9E+02 0.0063 19.7 4.7 52 38-93 81-132 (146)
120 PF11141 DUF2914: Protein of u 20.0 2.1E+02 0.0046 17.1 5.6 37 121-158 29-65 (66)
No 1
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.96 E-value=1.9e-28 Score=172.58 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=108.2
Q ss_pred chHHhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCC
Q 031046 40 SYSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHN 119 (166)
Q Consensus 40 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g 119 (166)
.|.+++| +++.++++|++.+++++.++|.|+.|.+|||++++|+|.++++++......+...+|++++++|++|++.|
T Consensus 19 ~~~~~LG--i~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g 96 (136)
T PRK10293 19 NMVGLLD--IRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREG 96 (136)
T ss_pred cHHHhcC--cEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCc
Confidence 3778888 99999999999999999999999999999999999999988777666554566789999999999999976
Q ss_pred CEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 120 AELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 120 ~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
.+.++|++++.||++.+++++++ |++|+++|.++++++++
T Consensus 97 -~l~a~a~vv~~Gr~~~~~~~~v~-d~~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 97 -RVRGVCKPLHLGSRHQVWQIEIF-DEKGRLCCSSRLTTAIL 136 (136)
T ss_pred -eEEEEEEEEecCCCEEEEEEEEE-eCCCCEEEEEEEEEEEC
Confidence 79999999999999999999999 78999999999999874
No 2
>PRK10254 thioesterase; Provisional
Probab=99.96 E-value=5.2e-28 Score=170.34 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=109.6
Q ss_pred chHHhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCC
Q 031046 40 SYSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHN 119 (166)
Q Consensus 40 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g 119 (166)
.|.+++| +++.++++|++++++++.++|.|+.|.+|||++++|+|.++++++....+++...+|++++++|++|++.|
T Consensus 19 ~~~~~LG--i~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g 96 (137)
T PRK10254 19 TMVAHLG--IVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEG 96 (137)
T ss_pred chHHhhC--cEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCC
Confidence 4778888 99999999999999999999999999999999999999998888876556677899999999999999965
Q ss_pred CEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 120 AELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 120 ~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
.+.++|++++.||++.+++++++ |++|+++|.+++++.++
T Consensus 97 -~l~a~a~vi~~Gr~~~v~~~~v~-d~~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 97 -KVRGVCQPLHLGRQNQSWEIVVF-DEQGRRCCTCRLGTAVL 136 (137)
T ss_pred -eEEEEEEEEecCcCEEEEEEEEE-cCCCCEEEEEEEEEEEe
Confidence 89999999999999999999999 78999999999999875
No 3
>PRK11688 hypothetical protein; Provisional
Probab=99.95 E-value=3e-26 Score=164.91 Aligned_cols=132 Identities=18% Similarity=0.318 Sum_probs=112.1
Q ss_pred ChHHHHHHHHHHH-HhCCCCCCCCCCCCccchHHhhcCceEEEEEeCCEEEEEEEeCCCCcC--CCCCccHHHHHHHHHH
Q 031046 11 DPEDVSKVIVFLK-EVGASSSIPDDCCTNDSYSNILGRHIKVHKIQRGRLICHLSVKPAILN--FFGGIHGGAIAAFSER 87 (166)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n--~~G~vhGG~l~sl~D~ 87 (166)
++|..+.+.++|. ..| |.+++| +++.++++|.+.+++++.++|.| +.|.+|||++++|+|.
T Consensus 6 ~~~~~~~~~~~~~~~~p--------------f~~~lG--~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~ 69 (154)
T PRK11688 6 QEEALKLVGEIFVYHMP--------------FNRLLG--LELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDV 69 (154)
T ss_pred HHHHHHHHHHHHHhcCC--------------HHHHhC--cEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHH
Confidence 4666677777665 223 557776 89999999999999999999985 6899999999999999
Q ss_pred HHHHhhhhhccC-------------CceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEE
Q 031046 88 MAIACARTVVAE-------------DKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCAS 154 (166)
Q Consensus 88 ~~~~~~~~~~~~-------------~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a 154 (166)
++++++...... ...++|++++++|++|++ |+.+.++|+++|.||++++++++++ +++|+++|++
T Consensus 70 a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~-~~~g~lvA~a 147 (154)
T PRK11688 70 AGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVARMELH-NEQGVHIASG 147 (154)
T ss_pred HHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEEEEEE-CCCCCEEEEE
Confidence 998887653211 123589999999999997 8899999999999999999999999 7899999999
Q ss_pred EEEEEe
Q 031046 155 HATFYN 160 (166)
Q Consensus 155 ~~t~~~ 160 (166)
+++|++
T Consensus 148 ~~t~~v 153 (154)
T PRK11688 148 TATYLV 153 (154)
T ss_pred EEEEEe
Confidence 999985
No 4
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.95 E-value=1.7e-26 Score=158.91 Aligned_cols=116 Identities=26% Similarity=0.363 Sum_probs=104.9
Q ss_pred hHHhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCC
Q 031046 41 YSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNA 120 (166)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~ 120 (166)
|.+++| +++.+.++|++++++++.|++.|+.|++|||++++++|.+++.++.....++...+|++++++|++|++.|
T Consensus 2 ~~~~lg--~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g- 78 (117)
T TIGR00369 2 LVSFLG--IEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG- 78 (117)
T ss_pred cccccC--eEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-
Confidence 345666 89999999999999999999999999999999999999988666655455667789999999999999988
Q ss_pred EEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 121 ELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 121 ~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
.+++++++++.||+..+++++++ +++|+++|+++++|++
T Consensus 79 ~l~a~a~v~~~gr~~~~~~~~i~-~~~g~~va~~~~t~~~ 117 (117)
T TIGR00369 79 KVRAIAQVVHLGRQTGVAEIEIV-DEQGRLCALSRGTTAV 117 (117)
T ss_pred EEEEEEEEEecCceEEEEEEEEE-CCCCCEEEEEEEEEcC
Confidence 99999999999999999999999 7899999999999974
No 5
>PLN02322 acyl-CoA thioesterase
Probab=99.95 E-value=3.5e-26 Score=163.35 Aligned_cols=121 Identities=24% Similarity=0.278 Sum_probs=106.6
Q ss_pred ccchHHhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCC
Q 031046 38 NDSYSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAP 117 (166)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~ 117 (166)
.+.|.+++| +++.++++|++++++++.++|.|+.|.+|||++++|+|.++++++.... .+...+|++++++|++|++
T Consensus 9 ~dpf~~~LG--i~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~-~~~~~vTiel~infLrpa~ 85 (154)
T PLN02322 9 IDPPLHMLG--FEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMAS-GFKRVAGIQLSINHLKSAD 85 (154)
T ss_pred cchHHHHCC--CEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhcc-CCCceEEEEEEEEEeccCC
Confidence 566788888 9999999999999999999999999999999999999988776654322 2346899999999999999
Q ss_pred CCCEEEEEEEEEEeCccEEEEEEEEEEC----C-CCcEEEEEEEEEEee
Q 031046 118 HNAELIMEASVVRSGRNVTVVAVEFKFN----D-TGKLVCASHATFYNT 161 (166)
Q Consensus 118 ~g~~v~~~a~v~~~gr~~~~~~~~i~~~----~-~g~~va~a~~t~~~~ 161 (166)
.|+.|.++|++++.||++.++++++++. + ++++++.+++|+.+.
T Consensus 86 ~G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 86 LGDLVFAEATPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred CCCEEEEEEEEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEc
Confidence 8999999999999999999999999951 2 379999999999664
No 6
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.94 E-value=1.2e-25 Score=153.95 Aligned_cols=109 Identities=21% Similarity=0.266 Sum_probs=100.2
Q ss_pred eEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEE
Q 031046 49 IKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASV 128 (166)
Q Consensus 49 ~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v 128 (166)
+++.++++|++.++++++|+|.|+.|++|||++++++|.+++.++.. .+...+|.+++++|++|++.|+.+.+++++
T Consensus 6 ~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~---~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v 82 (114)
T TIGR02286 6 IDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNS---YGDAAVAAQCTIDFLRPGRAGERLEAEAVE 82 (114)
T ss_pred eEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcC---CCCceEEEEEEEEEecCCCCCCEEEEEEEE
Confidence 89999999999999999999999999999999999999987665533 234468999999999999999999999999
Q ss_pred EEeCccEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 129 VRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 129 ~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
++.|+++.+++++++ +++|+++|.++++|+++
T Consensus 83 ~~~g~~~~~~~~~i~-~~~~~~va~~~~t~~~~ 114 (114)
T TIGR02286 83 VSRGGRTGTYDVEVV-NQEGELVALFRGTSRRL 114 (114)
T ss_pred EEeCCcEEEEEEEEE-cCCCCEEEEEEEEEEEC
Confidence 999999999999999 78999999999999874
No 7
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.94 E-value=5.3e-26 Score=158.33 Aligned_cols=124 Identities=34% Similarity=0.531 Sum_probs=112.5
Q ss_pred hHHhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCC
Q 031046 41 YSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNA 120 (166)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~ 120 (166)
|+..+ .++++...++|++.|+|+++++|+|+.+++|||++|+|+|..+++++... ....+.++++++++||+|+++|+
T Consensus 22 Fd~~~-~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~-~~~~~gvsvdLsvsyL~~AklGe 99 (148)
T KOG3328|consen 22 FDRVL-NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMT-SGFKPGVSVDLSVSYLSSAKLGE 99 (148)
T ss_pred hhhhc-CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhc-cCCCCceEEEEEhhhccccCCCC
Confidence 45555 56999999999999999999999999999999999999999988865443 35778999999999999999999
Q ss_pred EEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEeeccCCC
Q 031046 121 ELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTPIAKL 166 (166)
Q Consensus 121 ~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~~~~~ 166 (166)
.|+++++++|.|+++++++|+++...+|+++|+++++.+..|.+++
T Consensus 100 ~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~~~~~~~ 145 (148)
T KOG3328|consen 100 ELEIEATVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYFRPASKL 145 (148)
T ss_pred eEEEEEEEeecCceEEEEEEEEEEcCCCeEEEecceEEEeecCCCC
Confidence 9999999999999999999999987889999999999999887753
No 8
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=3.2e-25 Score=157.34 Aligned_cols=121 Identities=31% Similarity=0.443 Sum_probs=110.8
Q ss_pred hHHhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCC
Q 031046 41 YSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNA 120 (166)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~ 120 (166)
|.+.++ +++.++++|++.+++++.+++.|++|++|||++++++|.++++++....+.....+|++++++|+||++.|+
T Consensus 20 ~~~~lg--~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~ 97 (141)
T COG2050 20 FLKTLG--IEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD 97 (141)
T ss_pred hhhhcC--cEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe
Confidence 556666 799999999999999999999999999999999999999999999887766667799999999999999887
Q ss_pred EEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEeeccC
Q 031046 121 ELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTPIA 164 (166)
Q Consensus 121 ~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~~~ 164 (166)
+.++|++++.||+.++++++++++++++++|++++++++.+..
T Consensus 98 -v~a~a~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~~ 140 (141)
T COG2050 98 -VTAEARVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRKR 140 (141)
T ss_pred -EEEEEEEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecCC
Confidence 9999999999999999999999656679999999999998764
No 9
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.88 E-value=8.9e-21 Score=128.75 Aligned_cols=109 Identities=34% Similarity=0.516 Sum_probs=100.7
Q ss_pred eEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEE
Q 031046 49 IKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASV 128 (166)
Q Consensus 49 ~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v 128 (166)
+++.+.+++.+.+++++++.+.|+.|.+|||++++|+|.++...+....+++...++.+++++|++|++. +.+.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v 82 (113)
T cd03443 4 IRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARARV 82 (113)
T ss_pred EEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEEE
Confidence 7889999999999999999999999999999999999999888776655456778999999999999999 899999999
Q ss_pred EEeCccEEEEEEEEEECCCCcEEEEEEEEEE
Q 031046 129 VRSGRNVTVVAVEFKFNDTGKLVCASHATFY 159 (166)
Q Consensus 129 ~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~ 159 (166)
.+.|++...++++++ +++|+++++++++++
T Consensus 83 ~~~g~~~~~~~~~~~-~~~~~~~a~a~~~~~ 112 (113)
T cd03443 83 VKLGRRLAVVEVEVT-DEDGKLVATARGTFA 112 (113)
T ss_pred EecCceEEEEEEEEE-CCCCCEEEEEEEEEe
Confidence 999999999999999 677999999999986
No 10
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.87 E-value=7.5e-21 Score=134.42 Aligned_cols=115 Identities=18% Similarity=0.335 Sum_probs=96.3
Q ss_pred hHHhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhh---hccCCceeEEEEEEEEEeecCC
Q 031046 41 YSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACART---VVAEDKEIFLGELGISYLSAAP 117 (166)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~---~~~~~~~~vt~~l~i~fl~p~~ 117 (166)
|.+.+| +++.++++|++.+++++.++ .|+.|++|||++++|+|.++++++.. ....+...+|.+++++|++|+.
T Consensus 8 ~~~~lG--i~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~ 84 (138)
T TIGR02447 8 LSEAMG--IAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVT 84 (138)
T ss_pred HHHHcC--CEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcC
Confidence 667777 99999999999999999997 89999999999999999765544422 1223457899999999999998
Q ss_pred CCCEEEEEEEE-------------EEeCccEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031046 118 HNAELIMEASV-------------VRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTP 162 (166)
Q Consensus 118 ~g~~v~~~a~v-------------~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~ 162 (166)
. .+.+++++ .+.||+..+++++++ + +|+++|.++++|+.+|
T Consensus 85 ~--~~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~-~-~~~lvA~~~g~~~~~~ 138 (138)
T TIGR02447 85 G--DPVANCEAPDLESWEAFLATLQRGGKARVKLEAQIS-S-DGKLAATFSGEYVALP 138 (138)
T ss_pred C--CeEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEE-E-CCEEEEEEEEEEEEeC
Confidence 4 37777777 788999999999999 3 6699999999999864
No 11
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.78 E-value=8.5e-18 Score=117.94 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=92.5
Q ss_pred eCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEE-EEEEeecCCCCCEEEEEEEEEEeCc
Q 031046 55 QRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNAELIMEASVVRSGR 133 (166)
Q Consensus 55 ~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l-~i~fl~p~~~g~~v~~~a~v~~~gr 133 (166)
.++.+...+.+.|+|.|++|.+|||.+++|+|++++.++... .+..++|+++ .++|++|++.|+.+.+++++.+.|+
T Consensus 8 ~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~--~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~ 85 (133)
T PRK10694 8 PQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEI--AHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGT 85 (133)
T ss_pred CCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHH--cCCceEEEEECceEECCCcccCcEEEEEEEEEEccC
Confidence 456788888999999999999999999999999988887654 3567899998 6899999999999999999999999
Q ss_pred cEEEEEEEEEEC-------CCCcEEEEEEEEEEeeccC
Q 031046 134 NVTVVAVEFKFN-------DTGKLVCASHATFYNTPIA 164 (166)
Q Consensus 134 ~~~~~~~~i~~~-------~~g~~va~a~~t~~~~~~~ 164 (166)
+++.++++++.+ .+.++++++..+|+.++..
T Consensus 86 sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~~ 123 (133)
T PRK10694 86 TSISINIEVWVKKVASEPIGQRYKATEALFTYVAVDPE 123 (133)
T ss_pred ceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECCC
Confidence 999999999851 1234688999999987643
No 12
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.78 E-value=1.9e-17 Score=118.10 Aligned_cols=108 Identities=20% Similarity=0.232 Sum_probs=94.5
Q ss_pred eCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEE-EEEEeecCCCCCEEEEEEEEEEeCc
Q 031046 55 QRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNAELIMEASVVRSGR 133 (166)
Q Consensus 55 ~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l-~i~fl~p~~~g~~v~~~a~v~~~gr 133 (166)
..+.+..+..+.|.+.|++|.+|||.+.+|+|.+++.++... .+..+||+++ +++|++|++.|+.|.+.+++.+.||
T Consensus 10 ~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~--a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~Gr 87 (157)
T COG1607 10 PEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRH--AGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGR 87 (157)
T ss_pred CCceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHH--hCCeEEEEEeceEEEccccccCcEEEEEEEEeecCc
Confidence 356777888999999999999999999999999998888765 3668999998 6999999999999999999999999
Q ss_pred cEEEEEEEEEEC----CCCcEEEEEEEEEEeeccC
Q 031046 134 NVTVVAVEFKFN----DTGKLVCASHATFYNTPIA 164 (166)
Q Consensus 134 ~~~~~~~~i~~~----~~g~~va~a~~t~~~~~~~ 164 (166)
+++.+.+++|.+ +..+.++++..+|+.++.+
T Consensus 88 TSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~~ 122 (157)
T COG1607 88 TSMEVGVEVWAEDIRSGERRLATSAYFTFVAVDED 122 (157)
T ss_pred ccEEEEEEEEEecccCCcceEeeeEEEEEEEECCC
Confidence 999999999973 2345788899999988664
No 13
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.76 E-value=3.8e-17 Score=114.64 Aligned_cols=109 Identities=22% Similarity=0.404 Sum_probs=85.7
Q ss_pred eEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEE
Q 031046 49 IKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASV 128 (166)
Q Consensus 49 ~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v 128 (166)
+++.+++++++.++++..+...|+.|++|||++++++|.++++.+...++.++.++..+++++|++|++ | .+.+++++
T Consensus 21 ~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~-g-~v~a~~~~ 98 (132)
T PF14539_consen 21 IRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPAR-G-DVTATAEL 98 (132)
T ss_dssp -EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S----S--EEEEEE-
T ss_pred eEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccC-C-cEEEEEEc
Confidence 899999999999999999999999999999999999999998888777777778889999999999998 5 68888887
Q ss_pred EEe---CccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 129 VRS---GRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 129 ~~~---gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
-.. .+....++++++ |.+|+.||+++.++++
T Consensus 99 ~~e~~~~~~~~~~~v~i~-D~~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 99 TEEQIGERGELTVPVEIT-DADGEVVAEATITWYV 132 (132)
T ss_dssp TCCHCCHEEEEEEEEEEE-ETTC-EEEEEEEEEEE
T ss_pred CHHHhCCCcEEEEEEEEE-ECCCCEEEEEEEEEEC
Confidence 542 256688899999 7999999999999874
No 14
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.74 E-value=1.9e-16 Score=108.80 Aligned_cols=106 Identities=24% Similarity=0.283 Sum_probs=91.2
Q ss_pred eCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEE-EEEEeecCCCCCEEEEEEEEEEeCc
Q 031046 55 QRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNAELIMEASVVRSGR 133 (166)
Q Consensus 55 ~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l-~i~fl~p~~~g~~v~~~a~v~~~gr 133 (166)
+++.+.+++.+.+.++|+.|.+|||.+++++|.++..++.... ....++..+ +++|++|++.|+.+.+++++.+.|+
T Consensus 4 ~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~--~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~ 81 (123)
T cd03442 4 EDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHA--GGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGR 81 (123)
T ss_pred CccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHh--CCcEEEEEECceEEcCccccCcEEEEEEEEEEecC
Confidence 5678899999999999999999999999999999877655432 334567777 7999999999999999999999999
Q ss_pred cEEEEEEEEEECC----CCcEEEEEEEEEEeec
Q 031046 134 NVTVVAVEFKFND----TGKLVCASHATFYNTP 162 (166)
Q Consensus 134 ~~~~~~~~i~~~~----~g~~va~a~~t~~~~~ 162 (166)
+++.++++++.++ ++++++++..+++.++
T Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 82 TSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred CeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 9999999999532 3479999999998875
No 15
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.70 E-value=4.5e-16 Score=98.96 Aligned_cols=79 Identities=30% Similarity=0.437 Sum_probs=70.5
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEE
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 152 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va 152 (166)
+|.+|||.+++|+|.++..++......+...++.+++++|++|++.|+.+++++++.+.|+++.+++++++ +++++++|
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~-~~~~~~~~ 79 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVY-SEDGRLCA 79 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEE-ETTSCEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEE-ECCCcEEC
Confidence 58999999999999998888777654446789999999999999999999999999999999999999999 57888775
No 16
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.62 E-value=6.2e-15 Score=97.71 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=75.6
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEE
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 152 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va 152 (166)
.+.+|||++++++|.++..++....+ .....|++++++|++|+..|+++.+++++++.|++..+.+++++ +++|+++|
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~-~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~-~~~G~lva 91 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHG-ASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAY-QRDGKLVA 91 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccC-CCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEE-CCCCcEEE
Confidence 68999999999999988776654322 44678999999999999998999999999999999999999999 67899999
Q ss_pred EEEEEEE
Q 031046 153 ASHATFY 159 (166)
Q Consensus 153 ~a~~t~~ 159 (166)
.++.++.
T Consensus 92 ~~~~~~~ 98 (99)
T cd00556 92 SATQSFL 98 (99)
T ss_pred EEEEeEc
Confidence 9999886
No 17
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.58 E-value=4.4e-13 Score=99.11 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=90.0
Q ss_pred EEEEEeCC-EEEEEEEeCCCCc-CCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEE
Q 031046 50 KVHKIQRG-RLICHLSVKPAIL-NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEAS 127 (166)
Q Consensus 50 ~~~~~~~g-~~~~~~~~~~~~~-n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~ 127 (166)
++.++++| .+...+.++.++. |..|.+|||.+++++|.++..+ . .+...++...+++|++|+.+||.+.++++
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~--~~~~~~~~i~~irF~kPV~pGD~L~~ea~ 150 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---I--DAELALTGVANIRFKRPVKLGERVVAKAE 150 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---c--CCcEEEEEeeeEEEccCCCCCCEEEEEEE
Confidence 78888998 6889999999988 9999999999999999753322 1 24456777889999999999999999999
Q ss_pred EEEeCccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 128 VVRSGRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 128 v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
+++.+++...++++++. +|+++++|..+++.
T Consensus 151 v~~~~~~~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 151 VVRKKGNKYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred EEEccCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 99999988999999984 78999999999976
No 18
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.50 E-value=1.9e-12 Score=86.09 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=86.2
Q ss_pred EEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhc-------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCc
Q 031046 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGR 133 (166)
Q Consensus 61 ~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~-------~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr 133 (166)
.++.+.+.+.|+.|.+|+|.+..++|++....+.... ..+...++.+.+++|++|++.|+.+.+++++.+.++
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~ 82 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGR 82 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCc
Confidence 4678889999999999999999999998765544321 234557788999999999999999999999999999
Q ss_pred cEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 134 NVTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 134 ~~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
+...++.+++ +++|++++++...++.+
T Consensus 83 ~~~~~~~~~~-~~~g~~~a~~~~~~~~~ 109 (110)
T cd00586 83 KSFTFEQEIF-REDGELLATAETVLVCV 109 (110)
T ss_pred EEEEEEEEEE-CCCCeEEEEEEEEEEEe
Confidence 9999999999 56799999999988765
No 19
>PLN02647 acyl-CoA thioesterase
Probab=99.44 E-value=1.1e-11 Score=102.02 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=86.7
Q ss_pred EeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEE-EEEEeecCCCCCEEEEEEEEEEeC
Q 031046 54 IQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNAELIMEASVVRSG 132 (166)
Q Consensus 54 ~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l-~i~fl~p~~~g~~v~~~a~v~~~g 132 (166)
..+..+.....+.|++.|.+|.+|||.++.++|++++.++... .+..++|+++ +++|++|++.|+.|.++|.|.+.|
T Consensus 286 m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~--a~~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~ 363 (437)
T PLN02647 286 IRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAF--AGLRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTE 363 (437)
T ss_pred ccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHH--cCCceEEEEecceEecCccccCcEEEEEEEEEEEe
Confidence 3455677888899999999999999999999999998887764 3567899987 599999999999999999998776
Q ss_pred cc-----EEEEEEEEEE-C---CCCcEEEEEEEEEEeecc
Q 031046 133 RN-----VTVVAVEFKF-N---DTGKLVCASHATFYNTPI 163 (166)
Q Consensus 133 r~-----~~~~~~~i~~-~---~~g~~va~a~~t~~~~~~ 163 (166)
.+ ++.+++.++. + .+++++.++..||+..+.
T Consensus 364 ~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~ 403 (437)
T PLN02647 364 LENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPE 403 (437)
T ss_pred EEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEecc
Confidence 54 4555555442 2 245678899999988764
No 20
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=99.44 E-value=7.8e-12 Score=88.45 Aligned_cols=112 Identities=21% Similarity=0.350 Sum_probs=78.7
Q ss_pred HhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhc---cCCceeEEEEEEEEEeecCCCC
Q 031046 43 NILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV---AEDKEIFLGELGISYLSAAPHN 119 (166)
Q Consensus 43 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~---~~~~~~vt~~l~i~fl~p~~~g 119 (166)
+.|+ +++.+.+++++.++.+..|+ .|+.|+++||.+++++-.++...+.... +.....|..+.+++|++|+. +
T Consensus 16 ~~Mg--i~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~-~ 91 (144)
T PF09500_consen 16 KAMG--IKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIADSNIRYLKPVT-G 91 (144)
T ss_dssp HHTT---EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEE-S----S
T ss_pred hhcC--cEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCceEEcCCCC-C
Confidence 4455 99999999999999999996 5999999999999999876554443322 23356788899999999998 4
Q ss_pred CEEEEEEEEE-------------EeCccEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 120 AELIMEASVV-------------RSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 120 ~~v~~~a~v~-------------~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
.+.+++++. +.||-.+.+++++++ +|+.+++.++.|+.+
T Consensus 92 -d~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 92 -DFTARCSLPEPEDWERFLQTLARGGRARITLEVEIYS--GGELAAEFTGRYVAL 143 (144)
T ss_dssp ---EEEEE-------S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEEE
T ss_pred -CcEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 588888775 578888999999995 888999999999875
No 21
>PLN02647 acyl-CoA thioesterase
Probab=99.42 E-value=9.4e-12 Score=102.38 Aligned_cols=113 Identities=11% Similarity=0.084 Sum_probs=92.5
Q ss_pred EEEEeCCEEEEEEEeCCC------CcCCCCCccHHHHHHHHHHHHHHhhhhhccC------CceeEEEEE-EEEEeecCC
Q 031046 51 VHKIQRGRLICHLSVKPA------ILNFFGGIHGGAIAAFSERMAIACARTVVAE------DKEIFLGEL-GISYLSAAP 117 (166)
Q Consensus 51 ~~~~~~g~~~~~~~~~~~------~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~------~~~~vt~~l-~i~fl~p~~ 117 (166)
.....+.++.+..++.++ +.|+.|.+|||.++.++|.+|++++...... ...+||+++ +++|++|++
T Consensus 80 ~k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~ 159 (437)
T PLN02647 80 TKTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIR 159 (437)
T ss_pred ccccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCc
Confidence 344456677777755444 4999999999999999999999887765422 126899998 599999999
Q ss_pred CCCEEEEEEEEEEeCccEEEEEEEEEECC------CCcEEEEEEEEEEeecc
Q 031046 118 HNAELIMEASVVRSGRNVTVVAVEFKFND------TGKLVCASHATFYNTPI 163 (166)
Q Consensus 118 ~g~~v~~~a~v~~~gr~~~~~~~~i~~~~------~g~~va~a~~t~~~~~~ 163 (166)
.|+.|.++|+|.+.|++++.+.++++... +..++++|..+|+.++.
T Consensus 160 ~g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~ 211 (437)
T PLN02647 160 VDVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDS 211 (437)
T ss_pred CCcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcC
Confidence 99999999999999999999999999632 23479999999999875
No 22
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=6e-12 Score=93.88 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=83.3
Q ss_pred eEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEE
Q 031046 49 IKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASV 128 (166)
Q Consensus 49 ~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v 128 (166)
.-+.+.+.++.++.+...++.+++.|.+|||++++++|++..+|.+...+ ....+|.+++++|.+|++....+.+++.+
T Consensus 117 ~vFyd~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~p-nk~~vTanLsisy~~pip~~~f~vi~t~~ 195 (237)
T KOG4781|consen 117 VVFYDPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALP-NKIGVTANLSISYKRPIPTNHFVVIRTQL 195 (237)
T ss_pred EEEEecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCC-chhheeeecccccCCCcccceEEEEecch
Confidence 34556677789999999999999999999999999999999898887653 67789999999999999999999999999
Q ss_pred EEeCccEEEEEEEEEE
Q 031046 129 VRSGRNVTVVAVEFKF 144 (166)
Q Consensus 129 ~~~gr~~~~~~~~i~~ 144 (166)
.+..+|.+.+.+++..
T Consensus 196 ~~~~Grk~~~~g~l~~ 211 (237)
T KOG4781|consen 196 DKVEGRKCKTFGELNV 211 (237)
T ss_pred hhhcCcccceeeEEEE
Confidence 9988877888888773
No 23
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.31 E-value=3.3e-10 Score=71.68 Aligned_cols=97 Identities=33% Similarity=0.447 Sum_probs=81.9
Q ss_pred EEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEE
Q 031046 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAV 140 (166)
Q Consensus 61 ~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~ 140 (166)
..+.+.+.+.+..+.+|||.+..++|.+...........+...+..+.+++|++|++.|+.+.++.++.+.+++...++.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 82 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEV 82 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEE
Confidence 35667777888999999999999999987666554322345677889999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEEEEE
Q 031046 141 EFKFNDTGKLVCASHATF 158 (166)
Q Consensus 141 ~i~~~~~g~~va~a~~t~ 158 (166)
.++ +++|++++.+..++
T Consensus 83 ~~~-~~~~~~~~~~~~~~ 99 (100)
T cd03440 83 EVR-NEDGKLVATATATF 99 (100)
T ss_pred EEE-CCCCCEEEEEEEEe
Confidence 999 67799999987664
No 24
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.14 E-value=7e-09 Score=72.18 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=86.3
Q ss_pred EEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhc-------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCc
Q 031046 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGR 133 (166)
Q Consensus 61 ~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~-------~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr 133 (166)
.+..+....++..|.+|-+.+..+++.+......... ..+...+.++.+++|++|+..||.+.++.++.+.|+
T Consensus 5 ~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~ 84 (130)
T PRK10800 5 WPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMRG 84 (130)
T ss_pred EEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeCc
Confidence 5667777889999999999999999988654432211 123456778999999999999999999999999999
Q ss_pred cEEEEEEEEEECCCCcEEEEEEEEEEeeccC
Q 031046 134 NVTVVAVEFKFNDTGKLVCASHATFYNTPIA 164 (166)
Q Consensus 134 ~~~~~~~~i~~~~~g~~va~a~~t~~~~~~~ 164 (166)
++..+..+++ +++|++++++..+++.++..
T Consensus 85 ~s~~~~~~i~-~~~g~~~a~~~~~~v~~d~~ 114 (130)
T PRK10800 85 TSLTFTQRIV-NAEGTLLNEAEVLIVCVDPL 114 (130)
T ss_pred EEEEEEEEEE-cCCCeEEEEEEEEEEEEECC
Confidence 9999999999 67899999999999988654
No 25
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.13 E-value=1.4e-09 Score=71.85 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=67.2
Q ss_pred CCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEE
Q 031046 72 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLV 151 (166)
Q Consensus 72 ~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~v 151 (166)
+.+.+|||.+++++..++...+ + . .....+++.+|++|+..+.+++++.++++.||+....+++++. +|+++
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~----~-~-~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q--~g~~~ 85 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV----P-D-DRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ--NGKVI 85 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC----C-C-CCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE--CCEEE
Confidence 5789999999999987554332 1 1 2335699999999999888999999999999999999999984 79999
Q ss_pred EEEEEEEE
Q 031046 152 CASHATFY 159 (166)
Q Consensus 152 a~a~~t~~ 159 (166)
..++++|.
T Consensus 86 ~~a~~sf~ 93 (94)
T cd03445 86 FTATASFQ 93 (94)
T ss_pred EEEEEEEe
Confidence 99999874
No 26
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.12 E-value=1.6e-09 Score=85.78 Aligned_cols=113 Identities=18% Similarity=0.339 Sum_probs=91.4
Q ss_pred hHHhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCC
Q 031046 41 YSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNA 120 (166)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~ 120 (166)
|++++.+++.....+.+ ..+.+.|.+.|+.|++.-|+++.++-++........ .....+.-++++.|++|++.++
T Consensus 318 ~~d~I~~~l~e~~~~~~---~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~--~~~niiIE~i~iyflk~vqid~ 392 (432)
T COG4109 318 ISDQIANNLSEKGDEYG---VTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKK--KKRNIIIENITIYFLKPVQIDS 392 (432)
T ss_pred HHHHHHhhhhhhccccc---eEEEechhhccccccchHHHHHHHHHHHHHHHHHHh--cCCceEEEeeeeeeecceeccc
Confidence 67777765543333333 338899999999999999999999998877666553 2444555689999999999999
Q ss_pred EEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 121 ELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 121 ~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
.+++..+++..||+.+.+++++|. +|.++++|..++..
T Consensus 393 ~l~I~prIl~~gR~~a~idvei~~--~~~ivaKAiv~~ql 430 (432)
T COG4109 393 VLEIYPRILEEGRKFAKIDVEIYH--DGQIVAKAIVTVQL 430 (432)
T ss_pred EEEEeeeeeccccccceeEEEEee--Ccchhhhheeeeec
Confidence 999999999999999999999995 77889998877654
No 27
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.04 E-value=1.8e-08 Score=69.36 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=83.4
Q ss_pred EEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhh------c-c-CCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeC
Q 031046 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTV------V-A-EDKEIFLGELGISYLSAAPHNAELIMEASVVRSG 132 (166)
Q Consensus 61 ~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~------~-~-~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~g 132 (166)
..+.+....+++.|.+|.+.+..+++.+........ . . .+...+.++.+++|++|++.|+.+.+++++.+.|
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~ 82 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELK 82 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecC
Confidence 356677888999999999999999998754433211 1 1 1344677899999999999999999999999999
Q ss_pred ccEEEEEEEEEECCCCcEEEEEEEEEEeecc
Q 031046 133 RNVTVVAVEFKFNDTGKLVCASHATFYNTPI 163 (166)
Q Consensus 133 r~~~~~~~~i~~~~~g~~va~a~~t~~~~~~ 163 (166)
++...+..+++. +|+++|.+..+++.++.
T Consensus 83 ~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~ 111 (126)
T TIGR02799 83 GASLVFAQEVRR--GDTLLCEATVEVACVDA 111 (126)
T ss_pred ceEEEEEEEEEe--CCEEEEEEEEEEEEEEC
Confidence 999999999993 78899999999988765
No 28
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=98.99 E-value=1.2e-08 Score=78.60 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=63.6
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEE
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 152 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va 152 (166)
.+.+|||++++++-.++.... .+......+++++|++|++.| .++++++++|.||+...+++++++ +|++++
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~-----~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q--~~~~~~ 80 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA-----PPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQ--DGKVVA 80 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH-----TTTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEE--TTEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc-----cCCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEE--CCcCEE
Confidence 678999988887765433322 122356779999999999999 999999999999999999999994 899999
Q ss_pred EEEEEEEeec
Q 031046 153 ASHATFYNTP 162 (166)
Q Consensus 153 ~a~~t~~~~~ 162 (166)
+++++|....
T Consensus 81 ~a~~~f~~~~ 90 (255)
T PF13622_consen 81 TATASFGRPE 90 (255)
T ss_dssp EEEEEEE--T
T ss_pred EEEEEEccCc
Confidence 9999998754
No 29
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=98.96 E-value=4.6e-08 Score=66.26 Aligned_cols=99 Identities=16% Similarity=0.114 Sum_probs=77.6
Q ss_pred EEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhc-------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccE
Q 031046 63 LSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNV 135 (166)
Q Consensus 63 ~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~-------~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~ 135 (166)
+.+...++++.|.+|-+.+..+++.+......... ..+...+.++.+++|++|+..|+.+.++.++.+.|+++
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s 81 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFS 81 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEE
Confidence 35666788999999999999999987554432211 12344678899999999999999999999999999999
Q ss_pred EEEEEEEEECCCCcEEEEEEEEEEeec
Q 031046 136 TVVAVEFKFNDTGKLVCASHATFYNTP 162 (166)
Q Consensus 136 ~~~~~~i~~~~~g~~va~a~~t~~~~~ 162 (166)
..++-+++ ++++.+++.+..+++.++
T Consensus 82 ~~~~~~i~-~~~~~~~~~~~~~~v~~d 107 (117)
T TIGR00051 82 FVFSQEIF-NEDEALLKAATVIVVCVD 107 (117)
T ss_pred EEEEEEEE-eCCCcEEEeeEEEEEEEE
Confidence 99999999 566777766665454554
No 30
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.89 E-value=6.9e-08 Score=66.55 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=64.9
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCc--cEEEEEEEEEECCCCcE
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGR--NVTVVAVEFKFNDTGKL 150 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr--~~~~~~~~i~~~~~g~~ 150 (166)
.-.+||..++++++.+... .. ++...+..+.+++|++|+.+|+.+.+++++.+... ....++++++ +++|++
T Consensus 45 ~~i~~g~~~~~~~~~~~~~----~~-~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~-~~~g~~ 118 (128)
T cd03449 45 GRIAHGMLTASLISAVLGT----LL-PGPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCT-NQNGEV 118 (128)
T ss_pred CceecHHHHHHHHHHHHhc----cC-CCceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEE-eCCCCE
Confidence 4589999999988753211 11 23445667889999999999999999999987655 7888999999 788999
Q ss_pred EEEEEEEEE
Q 031046 151 VCASHATFY 159 (166)
Q Consensus 151 va~a~~t~~ 159 (166)
+++++.+.+
T Consensus 119 v~~g~~~~~ 127 (128)
T cd03449 119 VIEGEAVVL 127 (128)
T ss_pred EEEEEEEEe
Confidence 999998876
No 31
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=98.87 E-value=2e-07 Score=65.70 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=86.3
Q ss_pred EEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhc-------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEe
Q 031046 59 LICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRS 131 (166)
Q Consensus 59 ~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~-------~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~ 131 (166)
....+.+.-.+.+..|.+|=+.+..+++.+-........ ..+...++++.+++|++|+..|+.+.++.++.+.
T Consensus 6 ~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~ 85 (137)
T COG0824 6 FSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEEL 85 (137)
T ss_pred eEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEee
Confidence 346677777888999999999999999987555443311 1124578899999999999999999999999999
Q ss_pred CccEEEEEEEEEECCCCcEEEEEEEEEEeeccC
Q 031046 132 GRNVTVVAVEFKFNDTGKLVCASHATFYNTPIA 164 (166)
Q Consensus 132 gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~~~ 164 (166)
|+.+..+.-+++ +++ ++++++..+.+.++.+
T Consensus 86 ~~~s~~~~~~i~-~~~-~l~a~~~~~~V~v~~~ 116 (137)
T COG0824 86 GGKSLTLGYEIV-NED-ELLATGETTLVCVDLK 116 (137)
T ss_pred cCeEEEEEEEEE-eCC-EEEEEEEEEEEEEECC
Confidence 999999999999 444 9999999999988744
No 32
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=98.79 E-value=7.1e-07 Score=60.99 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=73.0
Q ss_pred CCCCcCCCCCccHHHHHHHHHHHHHHhhh------hhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEE
Q 031046 66 KPAILNFFGGIHGGAIAAFSERMAIACAR------TVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVA 139 (166)
Q Consensus 66 ~~~~~n~~G~vhGG~l~sl~D~~~~~~~~------~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~ 139 (166)
.+..++ .|.+|-+.+..++|.+-..... .....+...+.++.+++|++|+..|+.+.++.++.+.|+++..++
T Consensus 2 r~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~ 80 (121)
T PF13279_consen 2 RWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFE 80 (121)
T ss_dssp -GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEE
T ss_pred CHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEE
Confidence 345678 9999999999999986433321 111234467889999999999999999999999999999999999
Q ss_pred EEEEECCCCc--EEEEEEEEEEeeccC
Q 031046 140 VEFKFNDTGK--LVCASHATFYNTPIA 164 (166)
Q Consensus 140 ~~i~~~~~g~--~va~a~~t~~~~~~~ 164 (166)
-+++...+|+ ++|++..+.+.++..
T Consensus 81 ~~i~~~~~g~~~~~a~~~~~~v~~d~~ 107 (121)
T PF13279_consen 81 QEIFRPADGKGELAATGRTVMVFVDYK 107 (121)
T ss_dssp EEEEECSTTEEEEEEEEEEEEEEEETT
T ss_pred EEEEEcCCCceEEEEEEEEEEEEEeCC
Confidence 9999634554 599999998887654
No 33
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.76 E-value=2.1e-06 Score=59.35 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=79.2
Q ss_pred EEEEEeC-CEEEEEEEeCCCC---cCC---CCCccHHHHHHHHHHHHHHhhhhhcc--CCceeE-EEEEEEEEeecCCCC
Q 031046 50 KVHKIQR-GRLICHLSVKPAI---LNF---FGGIHGGAIAAFSERMAIACARTVVA--EDKEIF-LGELGISYLSAAPHN 119 (166)
Q Consensus 50 ~~~~~~~-g~~~~~~~~~~~~---~n~---~G~vhGG~l~sl~D~~~~~~~~~~~~--~~~~~v-t~~l~i~fl~p~~~g 119 (166)
++.++++ +.+.....+.+++ ..+ ...++|=.+.-++..++......... .+.... ...-++.|++|+.+|
T Consensus 12 ~i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pg 91 (131)
T cd01288 12 RVLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPG 91 (131)
T ss_pred EEEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCC
Confidence 4556664 6777888777763 222 26788877776676665554332111 223333 334689999999999
Q ss_pred CEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 120 AELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 120 ~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
+.+++++++.+.+++...++++++. +|+++++++.+++.
T Consensus 92 d~l~i~~~v~~~~~~~~~~~~~~~~--~g~~v~~~~~~~~~ 130 (131)
T cd01288 92 DQLILEVELLKLRRGIGKFKGKAYV--DGKLVAEAELMFAI 130 (131)
T ss_pred CEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 9999999999999999999999984 88999999999875
No 34
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.76 E-value=4.1e-07 Score=76.80 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=89.7
Q ss_pred EEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhc------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEe
Q 031046 58 RLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRS 131 (166)
Q Consensus 58 ~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~------~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~ 131 (166)
.++.++.+.+.+++..|.++-+.+..++|.+......... ..+...+.++.+++|++|++.|+.+.++.++.+.
T Consensus 345 ~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~ 424 (495)
T PRK07531 345 LRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSG 424 (495)
T ss_pred eEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEec
Confidence 4568999999999999999999999999987554332211 1233457789999999999999999999999999
Q ss_pred CccEEEEEEEEEECCCCcEEEEEEEEEEeeccC
Q 031046 132 GRNVTVVAVEFKFNDTGKLVCASHATFYNTPIA 164 (166)
Q Consensus 132 gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~~~ 164 (166)
|+++..++.+++ +.+|++++++..+++.++..
T Consensus 425 ~~~s~~~~~~i~-~~~g~l~A~g~~~~v~vD~~ 456 (495)
T PRK07531 425 DEKRLHLFHTLY-DAGGELIATAEHMLLHVDLK 456 (495)
T ss_pred CCcEEEEEEEEE-CCCCcEEEEEEEEEEEEECC
Confidence 999999999999 67899999999999988754
No 35
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.67 E-value=6.3e-06 Score=58.51 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=76.4
Q ss_pred EEEEEeC-CEEEEEEEeCCCCc---C---CCCCccHHHHHHHHHHHHHHhhhhh-ccCCceeEEEE-EEEEEeecCCCCC
Q 031046 50 KVHKIQR-GRLICHLSVKPAIL---N---FFGGIHGGAIAAFSERMAIACARTV-VAEDKEIFLGE-LGISYLSAAPHNA 120 (166)
Q Consensus 50 ~~~~~~~-g~~~~~~~~~~~~~---n---~~G~vhGG~l~sl~D~~~~~~~~~~-~~~~~~~vt~~-l~i~fl~p~~~g~ 120 (166)
++.+.++ +.++....+.+++. + ....++|=.+.-++..++++.+... ...+....... -+++|++|+.+|+
T Consensus 27 ~i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd 106 (147)
T PRK00006 27 RVLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGD 106 (147)
T ss_pred EEEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCC
Confidence 4556655 57888888777632 2 1345777666555555444332211 11122333333 3799999999999
Q ss_pred EEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 121 ELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 121 ~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
.+.+++++.+.+++...++++++. +|+++++++.++++.
T Consensus 107 ~l~i~~~i~~~~~~~v~~~~~~~~--~g~~v~~~~~~~~~~ 145 (147)
T PRK00006 107 QLILEVELLKQRRGIWKFKGVATV--DGKLVAEAELMFAIR 145 (147)
T ss_pred EEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 999999999998999999999984 899999999999864
No 36
>COG5496 Predicted thioesterase [General function prediction only]
Probab=98.65 E-value=3e-06 Score=57.99 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=80.9
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEE
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 152 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va 152 (166)
...+--+++..+++.++.-++...++.+...+..+..++.++|+++|..|.+.+++.+..++...+++.+. ++|.++.
T Consensus 28 ~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~--~~~~~Ig 105 (130)
T COG5496 28 LNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAM--EGGDKIG 105 (130)
T ss_pred cceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEe--eCCcEEe
Confidence 45667899999999999888888777777788889999999999999999999999999888888888887 5899999
Q ss_pred EEEEEEEeeccCC
Q 031046 153 ASHATFYNTPIAK 165 (166)
Q Consensus 153 ~a~~t~~~~~~~~ 165 (166)
+++++-.++|..+
T Consensus 106 ~g~h~R~iv~~~k 118 (130)
T COG5496 106 EGTHTRVIVPREK 118 (130)
T ss_pred eeEEEEEEecHHH
Confidence 9999999998765
No 37
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=98.61 E-value=3.9e-07 Score=70.99 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=65.2
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEE
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCA 153 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~ 153 (166)
+.++||.+++++=.++...+ +.+ ....+++++|++|+..+..++++.+++|.||+....+++++. +|+++++
T Consensus 21 ~~~fGG~~~Aqal~Aa~~tv----~~~--~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q--~g~~~~~ 92 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKTV----PEE--FIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQ--HGKTIFT 92 (271)
T ss_pred CceEccHHHHHHHHHHHhcC----CCC--CCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEE--CCEEEEE
Confidence 68999999998865444332 222 223489999999999888999999999999999999999984 8999999
Q ss_pred EEEEEE
Q 031046 154 SHATFY 159 (166)
Q Consensus 154 a~~t~~ 159 (166)
++++|.
T Consensus 93 a~asf~ 98 (271)
T TIGR00189 93 LQASFQ 98 (271)
T ss_pred EEEEcc
Confidence 999987
No 38
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=98.58 E-value=9e-07 Score=70.85 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=73.4
Q ss_pred EEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEE-EEEEeecCCCCCEEEEEEEEEEe
Q 031046 53 KIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNAELIMEASVVRS 131 (166)
Q Consensus 53 ~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l-~i~fl~p~~~g~~v~~~a~v~~~ 131 (166)
-..+..+....-..|++.|.+|.+|||+++.++++.+...+...+ +..+.+.++ .|+|.+|+..|..+.+.+.+...
T Consensus 194 ~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~--~~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~yT 271 (357)
T KOG2763|consen 194 WMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFC--KGRPATRSVDDIEFQKPVDVGCVLTFSSFVTYT 271 (357)
T ss_pred EeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHc--CCCceEEEechhhccCcceeeeEEEEeeEEEEe
Confidence 345566777778899999999999999999999999988887765 445566776 49999999999999999999998
Q ss_pred CccEEEEEEEEE
Q 031046 132 GRNVTVVAVEFK 143 (166)
Q Consensus 132 gr~~~~~~~~i~ 143 (166)
..+..++.++..
T Consensus 272 ~~k~~~vqv~~~ 283 (357)
T KOG2763|consen 272 DNKSIYVQVKAV 283 (357)
T ss_pred cCCceeEEEEEe
Confidence 777566666554
No 39
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.44 E-value=8.2e-06 Score=56.16 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=58.6
Q ss_pred CccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCcc-EEEEEEEEEECCCCcEEEE
Q 031046 75 GIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRN-VTVVAVEFKFNDTGKLVCA 153 (166)
Q Consensus 75 ~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~-~~~~~~~i~~~~~g~~va~ 153 (166)
.+||..+++++...... ..+. .....+++++|++|+.+|+.+.++++|....+. .+.+++++. |++|+++.+
T Consensus 45 ia~G~~~~~~~~~~~~~----~~~~--~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~-nq~G~~v~~ 117 (123)
T cd03455 45 YVNGPTLAGLVIRYVTD----WAGP--DARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWAR-NSEGDHVMA 117 (123)
T ss_pred EEEHHHHHHHHHHHHHH----ccCC--cceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEE-cCCCCEEEe
Confidence 48999999988754321 1111 223357899999999999999999999865332 778888888 899999999
Q ss_pred EEEEE
Q 031046 154 SHATF 158 (166)
Q Consensus 154 a~~t~ 158 (166)
++++.
T Consensus 118 g~a~v 122 (123)
T cd03455 118 GTATV 122 (123)
T ss_pred EEEEE
Confidence 98875
No 40
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=98.38 E-value=6.1e-06 Score=65.06 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=74.4
Q ss_pred eEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEE
Q 031046 49 IKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASV 128 (166)
Q Consensus 49 ~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v 128 (166)
++++.++++... -...+ .....++||.+++.+=.++...+ +++. ..-+++++|++|+..+..++.+.+.
T Consensus 12 l~l~~~~~~~f~--g~~~~---~~~r~~fGGqv~AQal~AA~~tv----~~~~--~~hSlh~~Fl~pg~~~~pi~y~Ve~ 80 (286)
T PRK10526 12 LNLEKIEEGLFR--GQSED---LGLRQVFGGQVVGQALYAAKETV----PEER--LVHSFHSYFLRPGDSQKPIIYDVET 80 (286)
T ss_pred cCcEEccCCeEE--CcCCC---CCCCceechHHHHHHHHHHHhcC----CCCC--CceEEEEEcCCCCCCCCCEEEEEEE
Confidence 455566665422 22222 33578999999998865444332 2232 3458999999999989999999999
Q ss_pred EEeCccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 129 VRSGRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 129 ~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
+|.||+.+...++++ ++|+++..++++|..
T Consensus 81 lRdGRSfstr~V~a~--Q~g~~if~~~~sF~~ 110 (286)
T PRK10526 81 LRDGNSFSARRVAAI--QNGKPIFYMTASFQA 110 (286)
T ss_pred EeCCCceEeEEEEEE--ECCEEEEEEEEEecc
Confidence 999999999999998 489999999999974
No 41
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.36 E-value=1.3e-05 Score=54.92 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=62.5
Q ss_pred CCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCc----cEEEEEEEEEECCC
Q 031046 72 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGR----NVTVVAVEFKFNDT 147 (166)
Q Consensus 72 ~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr----~~~~~~~~i~~~~~ 147 (166)
+.-.+||..+++++....... .+..........+++|++|+.+|+.+.+++++..... ....+++++. +++
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~-n~~ 115 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQW----LPGTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEAR-NQG 115 (127)
T ss_pred CCceechHHHHHHHHhhhhhh----ccCcccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEE-eCC
Confidence 456899999999987643222 1111345567899999999999999999999987643 5788888888 788
Q ss_pred CcEEEEEEEEE
Q 031046 148 GKLVCASHATF 158 (166)
Q Consensus 148 g~~va~a~~t~ 158 (166)
|+++..++.+.
T Consensus 116 g~~v~~g~~~~ 126 (127)
T cd03441 116 GEVVLSGEATV 126 (127)
T ss_pred CCEEEEEEEEe
Confidence 99888877653
No 42
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=98.33 E-value=2e-05 Score=54.67 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=60.0
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCC-CcEEE
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDT-GKLVC 152 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~-g~~va 152 (166)
-.+||-..++++-.+... ....+........+++|++|+.+|+.+.++.++....+....++.+++ +++ |+++.
T Consensus 43 ~iahG~l~~~~~~~~~~~----~~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~-nq~~g~~V~ 117 (126)
T cd03447 43 TITHGMYTSAAVRALVET----WAADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEAR-NEETGELVL 117 (126)
T ss_pred CeechhHHHHHHHHHHHH----hccCCCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEE-ECCCCCEEE
Confidence 458998888887543211 122223334456899999999999999999999987666778888888 677 89998
Q ss_pred EEEEEEE
Q 031046 153 ASHATFY 159 (166)
Q Consensus 153 ~a~~t~~ 159 (166)
++++++.
T Consensus 118 ~g~~~v~ 124 (126)
T cd03447 118 RGEAEVE 124 (126)
T ss_pred EEEEEEe
Confidence 8887653
No 43
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.24 E-value=1.2e-05 Score=66.39 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=75.9
Q ss_pred eEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEE
Q 031046 49 IKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASV 128 (166)
Q Consensus 49 ~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v 128 (166)
+.++.++++. ++....+.. ...+.+|||.+++++=.++...+ +++. ...+++++|++|...+.+++.+.+.
T Consensus 136 ~~l~~~~~~~--f~~~~~~~~-~~~~~~fGG~~~aqal~Aa~~~~----~~~~--~~~s~~~~Fl~~~~~~~pv~~~V~~ 206 (413)
T PLN02868 136 LHLEPLEVDI--FRGITLPDA-PTFGKVFGGQLVGQALAAASKTV----DPLK--LVHSLHAYFLLVGDINLPIIYQVER 206 (413)
T ss_pred cCcEeccCCe--EECCcCCCC-cccccccchHHHHHHHHHHHccC----CCCC--CceEeeeeecCCCCCCCCEEEEEEE
Confidence 5566666665 333333333 23588999999998765443322 2222 3458999999999988899999999
Q ss_pred EEeCccEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 129 VRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 129 ~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
+|.||+.+..+++++ ++|+++..++++|...
T Consensus 207 lr~Grs~~~r~v~~~--Q~g~~~~~~~~sf~~~ 237 (413)
T PLN02868 207 IRDGHNFATRRVDAI--QKGKVIFTLFASFQKE 237 (413)
T ss_pred EcCCCceEeeEEEEE--ECCeeEEEEeeccccC
Confidence 999999999999998 4899999999988653
No 44
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.20 E-value=2.8e-05 Score=54.44 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=55.3
Q ss_pred CccHHHHHHHHHHHHHHhhhhhccCCc-e-eEEEEEEEEEeecCCCCCEEEEEEEEEEeC------ccEEEEEEEEEECC
Q 031046 75 GIHGGAIAAFSERMAIACARTVVAEDK-E-IFLGELGISYLSAAPHNAELIMEASVVRSG------RNVTVVAVEFKFND 146 (166)
Q Consensus 75 ~vhGG~l~sl~D~~~~~~~~~~~~~~~-~-~vt~~l~i~fl~p~~~g~~v~~~a~v~~~g------r~~~~~~~~i~~~~ 146 (166)
.+||..+++++.... ... ..... . .....-+++|++|+.+|+.|.++++|.+.. +..+.++++++ ++
T Consensus 52 ia~G~~~~a~~~~~~---~~~-~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~-nq 126 (140)
T cd03446 52 IAHGLLTLSIATGLL---QRL-GVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVV-NQ 126 (140)
T ss_pred eeccccHHHHHhhHh---hhc-ccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEE-cC
Confidence 678888777664321 111 11111 1 122233899999999999999999998642 23677888888 89
Q ss_pred CCcEEEEEEEEEE
Q 031046 147 TGKLVCASHATFY 159 (166)
Q Consensus 147 ~g~~va~a~~t~~ 159 (166)
+|++|+++..+.+
T Consensus 127 ~g~~v~~~~~~~l 139 (140)
T cd03446 127 RGEVVQSGEMSLL 139 (140)
T ss_pred CCCEEEEEEEeee
Confidence 9999999998765
No 45
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.19 E-value=6e-05 Score=52.13 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=57.5
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEe----CccEEEEEEEEEECCCCc
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRS----GRNVTVVAVEFKFNDTGK 149 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~----gr~~~~~~~~i~~~~~g~ 149 (166)
-.+||-.+++++...... ..+ +... ..+++++|++|+.+|+.+.++++|... ++..+.++++++ +++|+
T Consensus 45 ~i~~G~~~~~~~~~~~~~----~~~-~~~~-i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~-nq~g~ 117 (127)
T cd03453 45 VIAHGMLTMGLLGRLVTD----WVG-DPGR-VVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDAT-DQAGG 117 (127)
T ss_pred cEecHHHHHHHHHHHHHH----HcC-Cccc-eEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEE-EcCCC
Confidence 468888888887533211 122 1122 257889999999999999999999642 456888999999 79999
Q ss_pred EEEEEEEEE
Q 031046 150 LVCASHATF 158 (166)
Q Consensus 150 ~va~a~~t~ 158 (166)
++.+++++.
T Consensus 118 ~v~~g~a~v 126 (127)
T cd03453 118 KKVLGRAIV 126 (127)
T ss_pred EEEEEEEEE
Confidence 999888764
No 46
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=98.19 E-value=0.0004 Score=48.75 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=70.3
Q ss_pred EEEEEe-CCEEEEEEEeCCCCc---CC---CCCccHHHHHHHHHHHHHHhh-hhhc---cCCceeEEEE-EEEEEeecCC
Q 031046 50 KVHKIQ-RGRLICHLSVKPAIL---NF---FGGIHGGAIAAFSERMAIACA-RTVV---AEDKEIFLGE-LGISYLSAAP 117 (166)
Q Consensus 50 ~~~~~~-~g~~~~~~~~~~~~~---n~---~G~vhGG~l~sl~D~~~~~~~-~~~~---~~~~~~vt~~-l~i~fl~p~~ 117 (166)
++.+++ ++.++.+..+.+++- ++ ...+=|=.+.-++-.+++..+ .... .......... -+++|++|+.
T Consensus 20 ~i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~ 99 (140)
T TIGR01750 20 RILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVV 99 (140)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccC
Confidence 455667 467888888887742 21 122223333333333332221 1111 0112333444 4899999999
Q ss_pred CCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEE
Q 031046 118 HNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFY 159 (166)
Q Consensus 118 ~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~ 159 (166)
+|+.+++.+++.+..++...++++++. +|+++++++.+++
T Consensus 100 pGd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 100 PGDQLILHAEFLKKRRKIGKFKGEATV--DGKVVAEAEITFA 139 (140)
T ss_pred CCCEEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 999999999999998889999999974 8999999999875
No 47
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=98.17 E-value=0.00059 Score=46.86 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=71.9
Q ss_pred EEEEEeC-CEEEEEEEeCCCCcCCC------CCccHHHHHHHHHHHHHHhhhhhcc----CCc-eeEEEEEEEEEeecCC
Q 031046 50 KVHKIQR-GRLICHLSVKPAILNFF------GGIHGGAIAAFSERMAIACARTVVA----EDK-EIFLGELGISYLSAAP 117 (166)
Q Consensus 50 ~~~~~~~-g~~~~~~~~~~~~~n~~------G~vhGG~l~sl~D~~~~~~~~~~~~----~~~-~~vt~~l~i~fl~p~~ 117 (166)
++.++++ +.+++...+.+++--.. +.+=|=.+.-++-.++...+..... ... ......-+++|++|+.
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 5667777 78888888887743222 3444444443443333332221111 122 2334446899999999
Q ss_pred CCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEE
Q 031046 118 HNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATF 158 (166)
Q Consensus 118 ~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~ 158 (166)
+|+.+.+++++...+...+.++++++. +|+++++++.++
T Consensus 91 pgd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~v~~~~~~~ 129 (131)
T cd00493 91 PGDTLTLEVELLKVRRGLGKFDGRAYV--DGKLVAEAELMA 129 (131)
T ss_pred CCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEE
Confidence 999999999999988889999999994 699999998443
No 48
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=98.16 E-value=4.8e-05 Score=54.92 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=51.7
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEEEEEEe----CccEEEEEEEEEECCCCcEEEEEEEEEEeeccC
Q 031046 103 IFLGELGISYLSAAPHNAELIMEASVVRS----GRNVTVVAVEFKFNDTGKLVCASHATFYNTPIA 164 (166)
Q Consensus 103 ~vt~~l~i~fl~p~~~g~~v~~~a~v~~~----gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~~~ 164 (166)
.+-.+.+++|++|+.+||+|.++.+|... ++.++.++++++ |++|++|.++..+++....+
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~-Nq~Ge~V~~~~~~~~~r~~~ 148 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVT-NEEGDVVQETYTTLAGRAGE 148 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEE-cCCCCEEEEEEEEEEEecCC
Confidence 44556799999999999999999999732 556899999999 89999999999999987543
No 49
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.16 E-value=3.5e-05 Score=54.38 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=58.4
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeC-------ccEEEEEEEEEEC
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSG-------RNVTVVAVEFKFN 145 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~g-------r~~~~~~~~i~~~ 145 (166)
.-.+||..+++++-. ..... ............+++|++|+.+|+.|.++++|...- ...+.++++++ +
T Consensus 53 ~~ia~G~l~~~~~~~---~~~~~-~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~-n 127 (146)
T cd03451 53 RRLVNSLFTLSLALG---LSVND-TSLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGY-N 127 (146)
T ss_pred CccccHHhHHHHHhh---heehh-ccccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEE-C
Confidence 346888888776532 11111 111011112224899999999999999999998643 24888888998 8
Q ss_pred CCCcEEEEEEEEEEeec
Q 031046 146 DTGKLVCASHATFYNTP 162 (166)
Q Consensus 146 ~~g~~va~a~~t~~~~~ 162 (166)
++|+++++++.+++...
T Consensus 128 q~g~~V~~~~~~~~~~~ 144 (146)
T cd03451 128 QDGEPVLSFERTALVPK 144 (146)
T ss_pred CCCCEEEEEEehhEEEc
Confidence 99999999999887653
No 50
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=98.14 E-value=0.00092 Score=47.05 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=72.1
Q ss_pred EEEEEeCCEEEEEEEeCCCCcC---CCCCccHHHHHHHHHHHHHHhh-h-hh-c-cCCceeEEEE-EEEEEeecCCC-CC
Q 031046 50 KVHKIQRGRLICHLSVKPAILN---FFGGIHGGAIAAFSERMAIACA-R-TV-V-AEDKEIFLGE-LGISYLSAAPH-NA 120 (166)
Q Consensus 50 ~~~~~~~g~~~~~~~~~~~~~n---~~G~vhGG~l~sl~D~~~~~~~-~-~~-~-~~~~~~vt~~-l~i~fl~p~~~-g~ 120 (166)
++.+.+++.+++...+..+... ..+.+-|=.+.-.+-.+++... . .. . .+.....-.. =+++|.+|+.+ |+
T Consensus 18 ~v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd 97 (138)
T cd01289 18 RVISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGS 97 (138)
T ss_pred EEEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCC
Confidence 4556677888888877765322 2244555444444433332222 1 11 1 1223333344 47999999755 99
Q ss_pred EEEEEEEEEEeCc-cEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 121 ELIMEASVVRSGR-NVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 121 ~v~~~a~v~~~gr-~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
.+.++++..+..+ ....++++++. +|+++|+|+.+++.
T Consensus 98 ~l~i~~~~~~~~~~~~~~~~~~~~v--~~~~va~a~l~~~~ 136 (138)
T cd01289 98 TLLIVVAELLQGDSGLGVFECTIED--QGGVLASGRLNVYQ 136 (138)
T ss_pred eeEEEeeeeeeCCCcEEEEEEEEEE--CCEEEEEEEEEEEc
Confidence 9999999998874 99999999995 78999999998875
No 51
>PLN02370 acyl-ACP thioesterase
Probab=98.03 E-value=0.0005 Score=56.85 Aligned_cols=107 Identities=8% Similarity=-0.009 Sum_probs=87.1
Q ss_pred EEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhc-------------cCCceeEEEEEEEEEeecCCCCCEEEE
Q 031046 58 RLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------------AEDKEIFLGELGISYLSAAPHNAELIM 124 (166)
Q Consensus 58 ~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~-------------~~~~~~vt~~l~i~fl~p~~~g~~v~~ 124 (166)
...-.+.+....++..|.+.=..++.++.+++..-+.... ..+...+....+|+|.||...|+.|++
T Consensus 139 ~y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V 218 (419)
T PLN02370 139 VFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQV 218 (419)
T ss_pred EEEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEE
Confidence 3456677888889999999999999988887765543221 123346777999999999999999999
Q ss_pred EEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEeeccC
Q 031046 125 EASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTPIA 164 (166)
Q Consensus 125 ~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~~~ 164 (166)
+.++...++..+.-+-.+++.++|++++++..+++.++..
T Consensus 219 ~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD~~ 258 (419)
T PLN02370 219 DTWVSASGKNGMRRDWLVRDCKTGETLTRASSVWVMMNKL 258 (419)
T ss_pred EEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEEEEECC
Confidence 9999999999999999999434799999999999988754
No 52
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.03 E-value=0.00012 Score=51.26 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=44.8
Q ss_pred EEEEEeecCCCCCEEEEEEEEEEe-------CccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 108 LGISYLSAAPHNAELIMEASVVRS-------GRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 108 l~i~fl~p~~~g~~v~~~a~v~~~-------gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
.+++|++|+.+|+.|.++.+|.+. ++..+.++++++ |++|+++++++.+.++
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~-nq~g~~v~~~~~~~~~ 139 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETL-NQRGEVVLTFEATVLV 139 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEE-cCCCCEEEEEEehhee
Confidence 489999999999999999999754 345788888998 8999999999987764
No 53
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=98.00 E-value=0.0001 Score=52.11 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=57.8
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccCCceeEE-EEEEEEEeecCCCCCEEEEEEEEEEeC------ccEEEEEEEEEECC
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFL-GELGISYLSAAPHNAELIMEASVVRSG------RNVTVVAVEFKFND 146 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt-~~l~i~fl~p~~~g~~v~~~a~v~~~g------r~~~~~~~~i~~~~ 146 (166)
-.+||..+++++.... . .. .++..... ..-+++|++|+.+|+.|.++.+|...- +.++.+++++. |+
T Consensus 51 ~ia~G~l~~s~~~~l~---~-~~-~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~-nq 124 (142)
T cd03452 51 RVAHGYFVLSAAAGLF---V-DP-APGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVT-NQ 124 (142)
T ss_pred eeecHHHHHHHHhhhC---c-cC-CcccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEE-ec
Confidence 3588888888776421 1 11 12221111 134999999999999999999998652 23688888888 89
Q ss_pred CCcEEEEEEEEEEee
Q 031046 147 TGKLVCASHATFYNT 161 (166)
Q Consensus 147 ~g~~va~a~~t~~~~ 161 (166)
+|+++.++....++.
T Consensus 125 ~g~~V~~~~~~~~~~ 139 (142)
T cd03452 125 NGELVASYDILTLVA 139 (142)
T ss_pred CCCEEEEEEehHeeE
Confidence 999999999887754
No 54
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=97.93 E-value=0.00027 Score=59.39 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=62.3
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEe--CccEEEEEEEEEECCCCcEE
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRS--GRNVTVVAVEFKFNDTGKLV 151 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~--gr~~~~~~~~i~~~~~g~~v 151 (166)
-.+||-.+++++..... ... ++...+....+++|++|+.+|+++.++.++... ++..+.++++++ +++|+++
T Consensus 59 ~IahG~l~~s~~~~l~~----~~~-~g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~-nq~G~~V 132 (466)
T PRK08190 59 VVAHGMWGGALISAVLG----TRL-PGPGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCT-NQDGEVV 132 (466)
T ss_pred ceeCHHHHHHHHHHHHh----hhC-CCcceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEE-eCCCCEE
Confidence 35899888887653211 112 233455567899999999999999999999754 666788888889 7999999
Q ss_pred EEEEEEEEee
Q 031046 152 CASHATFYNT 161 (166)
Q Consensus 152 a~a~~t~~~~ 161 (166)
.+++.+++..
T Consensus 133 ~~g~~~~l~~ 142 (466)
T PRK08190 133 ITGTAEVIAP 142 (466)
T ss_pred EEEEEEeecc
Confidence 9999988764
No 55
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=97.92 E-value=0.00053 Score=49.88 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=48.0
Q ss_pred EEEEEEEeecCCCCCEEEEEEEEEEe----CccEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031046 106 GELGISYLSAAPHNAELIMEASVVRS----GRNVTVVAVEFKFNDTGKLVCASHATFYNTP 162 (166)
Q Consensus 106 ~~l~i~fl~p~~~g~~v~~~a~v~~~----gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~ 162 (166)
.+.+.+|++|+.+||.|.++.+|... ++.++.++.++. |++|++|+++..+++..+
T Consensus 87 ~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~-NQ~Ge~V~~~~~~~~~~~ 146 (166)
T PRK13691 87 VDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCT-NDDGELVMEAYTTLMGQQ 146 (166)
T ss_pred eeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEE-CCCCCEEEEEEEEEEEec
Confidence 35678899999999999999998744 446888999999 899999999999988764
No 56
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.88 E-value=0.00065 Score=45.49 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccC----CceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCc
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAE----DKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGK 149 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~----~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~ 149 (166)
-.+|=..++-+.|......+....+. .....+++-++.|++|....+.+..+.+..+.++.....++++| +++|+
T Consensus 15 ~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~-~~~G~ 93 (104)
T cd03444 15 PRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIF-TRDGE 93 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEE-CCCCC
Confidence 36788899999998765555443321 12467889999999999888999999999999999999999999 89999
Q ss_pred EEEEEEEE
Q 031046 150 LVCASHAT 157 (166)
Q Consensus 150 ~va~a~~t 157 (166)
++|...-.
T Consensus 94 LvAs~~Q~ 101 (104)
T cd03444 94 LVASVAQE 101 (104)
T ss_pred EEEEEEEe
Confidence 99988754
No 57
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=97.82 E-value=0.0029 Score=53.01 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=75.3
Q ss_pred EEEEEeCCEEEEEEEeCCCC--c-C---CCCCccHHHHHHHHHHHHHHhhhhhcc--CCceeEEEEE-EEEEeecCCCCC
Q 031046 50 KVHKIQRGRLICHLSVKPAI--L-N---FFGGIHGGAIAAFSERMAIACARTVVA--EDKEIFLGEL-GISYLSAAPHNA 120 (166)
Q Consensus 50 ~~~~~~~g~~~~~~~~~~~~--~-n---~~G~vhGG~l~sl~D~~~~~~~~~~~~--~~~~~vt~~l-~i~fl~p~~~g~ 120 (166)
++.+++++.++....+..+. . + ....++|=.+.-++-.+++..+....+ .+........ +++|++|+.+|+
T Consensus 341 rIl~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGD 420 (464)
T PRK13188 341 KIIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGD 420 (464)
T ss_pred EEeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCC
Confidence 34455667788888777662 2 2 245677766664444444333321111 1222334444 899999999999
Q ss_pred EEEEEEEEEE-eCccEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031046 121 ELIMEASVVR-SGRNVTVVAVEFKFNDTGKLVCASHATFYNTP 162 (166)
Q Consensus 121 ~v~~~a~v~~-~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~ 162 (166)
.+.+++++++ ..+..+.++++++. +|++++++..++++..
T Consensus 421 tL~I~veI~~~~~~giv~f~g~~~v--dGelVaeael~~~v~~ 461 (464)
T PRK13188 421 TLIFKVELLSPIRRGICQMQGKAYV--NGKLVCEAELMAQIVK 461 (464)
T ss_pred EEEEEEEEEEEecCCEEEEEEEEEE--CCEEEEEEEEEEEEec
Confidence 9999999987 55678899999984 8999999999998753
No 58
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=97.80 E-value=0.0042 Score=43.47 Aligned_cols=104 Identities=12% Similarity=0.175 Sum_probs=64.0
Q ss_pred EEEEEe-CC-E----EEEEEEeCCCCc---C---CCCCccHHHHHH-HHHHHHHHhhhhhc--cCC---ce-eEEEEEEE
Q 031046 50 KVHKIQ-RG-R----LICHLSVKPAIL---N---FFGGIHGGAIAA-FSERMAIACARTVV--AED---KE-IFLGELGI 110 (166)
Q Consensus 50 ~~~~~~-~g-~----~~~~~~~~~~~~---n---~~G~vhGG~l~s-l~D~~~~~~~~~~~--~~~---~~-~vt~~l~i 110 (166)
++.+++ ++ . ++.+..+.+++- + ....+=|-.+.- ++..+..++..... ..+ .. ....--++
T Consensus 12 ~v~~v~~~g~~~~g~~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (138)
T PF07977_consen 12 RVLEVDPPGGSHGGRIVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNV 91 (138)
T ss_dssp EEEEEETTTTETTEEEEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEE
Confidence 566777 44 4 788888887743 1 223344444443 44443333333211 111 11 23345589
Q ss_pred EEeecCCCCC-EEEEEEEEEE---eCccEEEEEEEEEECCCCcEEEEEE
Q 031046 111 SYLSAAPHNA-ELIMEASVVR---SGRNVTVVAVEFKFNDTGKLVCASH 155 (166)
Q Consensus 111 ~fl~p~~~g~-~v~~~a~v~~---~gr~~~~~~~~i~~~~~g~~va~a~ 155 (166)
+|++|+.+|+ .+++++++.+ ..+..+.++++++. +|++++++.
T Consensus 92 kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 92 KFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAYV--DGELVAEAE 138 (138)
T ss_dssp EE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEEE--TTEEEEEEE
T ss_pred EECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEEE--CCEEEEEEC
Confidence 9999999999 9999999999 88899999999996 899998873
No 59
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=97.70 E-value=0.0083 Score=42.74 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=72.1
Q ss_pred CEEEEEEEeCCC--Cc---CCCCCccHHHHHH--HHHHHHHHhhhhhccCCce-eEEEEEEEEEeecCCCCCEEEEEEEE
Q 031046 57 GRLICHLSVKPA--IL---NFFGGIHGGAIAA--FSERMAIACARTVVAEDKE-IFLGELGISYLSAAPHNAELIMEASV 128 (166)
Q Consensus 57 g~~~~~~~~~~~--~~---n~~G~vhGG~l~s--l~D~~~~~~~~~~~~~~~~-~vt~~l~i~fl~p~~~g~~v~~~a~v 128 (166)
+.+.....++++ +. .+..-+-.|++.. ++..++.++.......+.. ....--++.|.+|+.+|+.+.++.++
T Consensus 33 ~~i~a~k~Vt~nepfF~gHFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~l~l~~~~ 112 (147)
T COG0764 33 KRIVAIKNVTINEPFFTGHFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEVKL 112 (147)
T ss_pred cEEEEEEccCCCCCeeCCcCCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCCEEEEEEEE
Confidence 356677777554 22 2355577887765 3333333333322112213 33444589999999999999999999
Q ss_pred EEeC-ccEEEEEEEEEECCCCcEEEEEEEEEEeecc
Q 031046 129 VRSG-RNVTVVAVEFKFNDTGKLVCASHATFYNTPI 163 (166)
Q Consensus 129 ~~~g-r~~~~~~~~i~~~~~g~~va~a~~t~~~~~~ 163 (166)
++.+ +......++... ||+++++++..++....
T Consensus 113 ~~~~~~~~~~~~~~a~V--dg~~v~~a~~~~~~~~~ 146 (147)
T COG0764 113 LKSRRLGIGKAKGVATV--DGKVVAEAELLFAGVEK 146 (147)
T ss_pred EEecccceEEEEEEEEE--CCEEEEEEEEEEEEeec
Confidence 9998 888888888885 89999999999987653
No 60
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=97.70 E-value=0.0035 Score=48.71 Aligned_cols=104 Identities=12% Similarity=0.097 Sum_probs=76.4
Q ss_pred EEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhc-------------cCCceeEEEEEEEEEeecCCCCCEEEEEEE
Q 031046 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------------AEDKEIFLGELGISYLSAAPHNAELIMEAS 127 (166)
Q Consensus 61 ~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~-------------~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~ 127 (166)
-.+.+....++..|.+.=-.++.++-+++...+.... ..+...+.....+++.++...|+.|.++++
T Consensus 6 ~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i~Tw 85 (261)
T PF01643_consen 6 KEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITIETW 85 (261)
T ss_dssp EEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEEEEE
T ss_pred EEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEEEEE
Confidence 4677788889999999999999999887765543221 122234566899999998888999999999
Q ss_pred EEEeCccEEEEEEEEEEC-CCCcEEEEEEEEEEeeccCC
Q 031046 128 VVRSGRNVTVVAVEFKFN-DTGKLVCASHATFYNTPIAK 165 (166)
Q Consensus 128 v~~~gr~~~~~~~~i~~~-~~g~~va~a~~t~~~~~~~~ 165 (166)
+...++-.+.=+-.++ + ++|+++++|+..++.++..+
T Consensus 86 ~~~~~~~~~~R~f~i~-d~~~G~~l~~a~s~WvliD~~t 123 (261)
T PF01643_consen 86 PSGFKRFFAYRDFEIY-DAEDGELLARATSIWVLIDLET 123 (261)
T ss_dssp EEEE-SSEEEEEEEEE---TTS-EEEEEEEEEEEEETTT
T ss_pred eccCCCcEEEEEEEEE-ECCCCcEEEEEEEEEEEEEhhh
Confidence 9999999888888999 7 89999999999999987653
No 61
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=97.64 E-value=0.011 Score=42.31 Aligned_cols=103 Identities=10% Similarity=-0.030 Sum_probs=66.4
Q ss_pred CEEEEEEEeCCCC--cC----CCCCccHHHHHHHHHHHHHHhhhhhccC------Ccee-EEEEEEEEEeecCCCCC-EE
Q 031046 57 GRLICHLSVKPAI--LN----FFGGIHGGAIAAFSERMAIACARTVVAE------DKEI-FLGELGISYLSAAPHNA-EL 122 (166)
Q Consensus 57 g~~~~~~~~~~~~--~n----~~G~vhGG~l~sl~D~~~~~~~~~~~~~------~~~~-vt~~l~i~fl~p~~~g~-~v 122 (166)
|+++.+..+++++ .. ....+-|=.+.-.+-.+++..+...... .... ....-+.+|.+++.+|+ .+
T Consensus 27 g~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l 106 (150)
T cd01287 27 GYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKV 106 (150)
T ss_pred cEEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEE
Confidence 3688888888763 22 2333444444434433333332221110 1112 23334799999999998 89
Q ss_pred EEEEEEEEeC----ccEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 123 IMEASVVRSG----RNVTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 123 ~~~a~v~~~g----r~~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
.+++++.+.+ ++.+..++.++. +|++++++...-+.+
T Consensus 107 ~~e~~i~~~~~~~~~~~~~~~~~~~v--dg~~v~~a~~~~~~~ 147 (150)
T cd01287 107 TYEVHIKEVGRDGPRPYIIADASLWV--DGLRIYEAKDIAVRL 147 (150)
T ss_pred EEEEEEEEEEccCCccEEEEEEEEEE--CCEEEEEEEccEEEe
Confidence 9999999886 489999999996 999999998765544
No 62
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.46 E-value=0.0018 Score=50.56 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=78.5
Q ss_pred eEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEE
Q 031046 49 IKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASV 128 (166)
Q Consensus 49 ~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v 128 (166)
++++.++++....+...... .++.+.++||.+++-+=.++.. + . +...+.-++...|++.+.+..+|....+-
T Consensus 14 l~l~~lD~n~f~~~~l~~g~-~~~~~~~fGG~i~sQaLaAA~~---T-V--~e~f~p~SlH~YFI~~gd~~~pI~Y~V~r 86 (294)
T KOG3016|consen 14 LNLERLDKNLYLTRHLPKGR-EIPSNHAYGGQIASQALAAASK---T-V--EEMFIPHSLHCYFILVGDPNIPIIYDVKR 86 (294)
T ss_pred heeeecCCCceecccCCccc-cccCcccccceehHHHHHHHHh---c-c--ccccccceeeeeeeecCCCCCceEEEeee
Confidence 56777777754333333222 2778999999999977543322 2 2 23345558999999999999999999999
Q ss_pred EEeCccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 129 VRSGRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 129 ~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
+|.||+.++=.++.+ ++|+++..+...|..
T Consensus 87 irdGr~F~~R~V~Av--Q~~k~If~~qiSF~~ 116 (294)
T KOG3016|consen 87 IRDGRNFATRSVDAV--QKGKTIFTLQISFQQ 116 (294)
T ss_pred ecCCceeEEEEEEEE--ECCeEEEEEEEEEcc
Confidence 999999999999999 599999999999984
No 63
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=97.44 E-value=0.0043 Score=44.71 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=46.4
Q ss_pred EEEEEEEeecCCCCCEEEEEEEEEEeC----ccEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031046 106 GELGISYLSAAPHNAELIMEASVVRSG----RNVTVVAVEFKFNDTGKLVCASHATFYNTP 162 (166)
Q Consensus 106 ~~l~i~fl~p~~~g~~v~~~a~v~~~g----r~~~~~~~~i~~~~~g~~va~a~~t~~~~~ 162 (166)
.--+++|++|+.+|++|.++.++...- +....++.+.+ +++|+++.....+.+...
T Consensus 97 g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~-~~~g~~v~~~~~~~~~~~ 156 (159)
T COG2030 97 GGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETV-NQEGELVLTLEATVLVLR 156 (159)
T ss_pred cccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEE-ccCCcEEEEEEEeEeEee
Confidence 345899999999999999999998542 36788888888 799999999888877653
No 64
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=97.39 E-value=0.0029 Score=49.20 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=63.3
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccC----CceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCc
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAE----DKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGK 149 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~----~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~ 149 (166)
-..|=-.++.+.|......+...... .....+++.+++|+++.+.++++..+++....+......++++| |.+|+
T Consensus 181 ~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~-d~~G~ 259 (271)
T TIGR00189 181 PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIF-TRDGV 259 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEE-CCCCC
Confidence 34577888899997322222221111 12346889999999998889999999999998888899999999 89999
Q ss_pred EEEEEEEEE
Q 031046 150 LVCASHATF 158 (166)
Q Consensus 150 ~va~a~~t~ 158 (166)
+||.+.-.-
T Consensus 260 lvAs~~Qe~ 268 (271)
T TIGR00189 260 LIASTVQEG 268 (271)
T ss_pred EEEEEEeee
Confidence 999987543
No 65
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=97.29 E-value=0.0073 Score=43.11 Aligned_cols=84 Identities=11% Similarity=0.091 Sum_probs=54.7
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccCCce--eEEEEEEEEEeecCCCCCEEEEEEEEEEe----Cc-cEEEEEEEEEECC
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAEDKE--IFLGELGISYLSAAPHNAELIMEASVVRS----GR-NVTVVAVEFKFND 146 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~~~~--~vt~~l~i~fl~p~~~g~~v~~~a~v~~~----gr-~~~~~~~~i~~~~ 146 (166)
-.+||-.+++++....... ...++.. ......+++|++|+.+||.|.++.+|... +. ..++.++++....
T Consensus 57 ~Ia~G~~t~sl~~~l~~~~---~~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~ 133 (149)
T cd03450 57 TIAHGFLTLSLLPALTPQL---FRVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEG 133 (149)
T ss_pred eEECHHHHHHHHHHHHHhc---ccCCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeC
Confidence 3588888888876432111 1111211 22234589999999999999999999742 22 3777888887656
Q ss_pred CCcEEEEEEEEEEe
Q 031046 147 TGKLVCASHATFYN 160 (166)
Q Consensus 147 ~g~~va~a~~t~~~ 160 (166)
.++++..+...++.
T Consensus 134 ~~~p~~~~~~~~~~ 147 (149)
T cd03450 134 EDKPACVAEWISRL 147 (149)
T ss_pred CCCceEEEEEEEee
Confidence 67777776665543
No 66
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=97.25 E-value=0.00097 Score=52.15 Aligned_cols=82 Identities=23% Similarity=0.363 Sum_probs=65.2
Q ss_pred CCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEE
Q 031046 72 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLV 151 (166)
Q Consensus 72 ~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~v 151 (166)
..-.++||.+.+.+=.++... .+++. +.-++...|++|..+.+++....+.+|.||+...-+++.+ ++|+++
T Consensus 30 g~~~vFGGqvvaQAL~Aa~~T----V~~~r--~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~ai--Q~g~~I 101 (289)
T COG1946 30 GLRRVFGGQVVAQALVAALRT----VPEDR--VVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAI--QHGKLI 101 (289)
T ss_pred CCccccccchHHHHHHHHHhh----cCCCC--CcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEE--ECCEEE
Confidence 456789999988765433222 22232 2237788999999999999999999999999999999999 599999
Q ss_pred EEEEEEEEee
Q 031046 152 CASHATFYNT 161 (166)
Q Consensus 152 a~a~~t~~~~ 161 (166)
..+++.|..-
T Consensus 102 f~~~ASF~~~ 111 (289)
T COG1946 102 FSATASFQVP 111 (289)
T ss_pred EEEEeeccCC
Confidence 9999999763
No 67
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=97.24 E-value=0.011 Score=41.79 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=54.2
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCC-----CEEEEEEEEEEe--CccEEEEEEEEEEC
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHN-----AELIMEASVVRS--GRNVTVVAVEFKFN 145 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g-----~~v~~~a~v~~~--gr~~~~~~~~i~~~ 145 (166)
.-.+||-..++++-..... ..+ +...+ .+++++|.+|+.+| +.+.++++|... +++.+.+++.+. +
T Consensus 54 ~~iahG~~~~a~~~~~~~~----~~~-~~~~~-~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~-~ 126 (142)
T PRK13693 54 TAIAHGMLTMGLGGGYVTS----WVG-DPGAV-TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTAT-T 126 (142)
T ss_pred CcEecHHHHHHHHHHHHHH----hcC-CCcce-EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEE-E
Confidence 3568999998888653211 111 22223 37899999999864 389999998854 666788888888 5
Q ss_pred CCCcEEEEEEEEEE
Q 031046 146 DTGKLVCASHATFY 159 (166)
Q Consensus 146 ~~g~~va~a~~t~~ 159 (166)
++++++.++++...
T Consensus 127 ~~~~~~~~~~~~~~ 140 (142)
T PRK13693 127 GGKKIFGRAIASAK 140 (142)
T ss_pred CCcEEEEEEEEEEE
Confidence 66666777666543
No 68
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.23 E-value=0.0066 Score=49.03 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=75.6
Q ss_pred eCCCCcCCCCCccHH-HHHHHHHHHHHHhhhhhccC-----C--ceeEEEEE-EEEEeecCCCC-CEEEEEEEEEEeCcc
Q 031046 65 VKPAILNFFGGIHGG-AIAAFSERMAIACARTVVAE-----D--KEIFLGEL-GISYLSAAPHN-AELIMEASVVRSGRN 134 (166)
Q Consensus 65 ~~~~~~n~~G~vhGG-~l~sl~D~~~~~~~~~~~~~-----~--~~~vt~~l-~i~fl~p~~~g-~~v~~~a~v~~~gr~ 134 (166)
.-|.+.|.-|..++| -+..|+|++..++....... . ..++|..+ .|+|.+|...| ..+.+.|.|...|++
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~s 94 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKS 94 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEecccc
Confidence 556667789999999 59999999876655322221 1 34677776 59999987777 577788999999999
Q ss_pred EEEEEEEEEE-C---CCCcEEEEEEEEEEeecc
Q 031046 135 VTVVAVEFKF-N---DTGKLVCASHATFYNTPI 163 (166)
Q Consensus 135 ~~~~~~~i~~-~---~~g~~va~a~~t~~~~~~ 163 (166)
++.+.+.+.. | .+..++.+|..+|+..+.
T Consensus 95 SMEv~i~V~q~~~~~~~~~~~~kA~f~fVard~ 127 (357)
T KOG2763|consen 95 SMEVSIYVMQEDLATGEKSLVLKATFTFVARDA 127 (357)
T ss_pred ceEEEEEEEEehhccchhhheeeeEEEEEEecC
Confidence 9999999986 1 234689999999998854
No 69
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=97.16 E-value=0.054 Score=39.62 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=61.1
Q ss_pred EEEEEEEeCCCCc---CCC--CCccHHHHHH-HHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCE-EEEEEEEEE
Q 031046 58 RLICHLSVKPAIL---NFF--GGIHGGAIAA-FSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAE-LIMEASVVR 130 (166)
Q Consensus 58 ~~~~~~~~~~~~~---n~~--G~vhGG~l~s-l~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~-v~~~a~v~~ 130 (166)
.++.+..++++.- +++ .-+--|++.- .+-.+++..+......+...+...-+.+|.+++.+|+. +.++.++.+
T Consensus 54 ~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~ 133 (172)
T PRK05174 54 YIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKR 133 (172)
T ss_pred EEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEE
Confidence 6888888888742 221 1122244432 33333333222111122223333457999999999987 899998887
Q ss_pred e---CccEEEEEEEEEECCCCcEEEEEEEE
Q 031046 131 S---GRNVTVVAVEFKFNDTGKLVCASHAT 157 (166)
Q Consensus 131 ~---gr~~~~~~~~i~~~~~g~~va~a~~t 157 (166)
. .+.....+++++. +|++++++...
T Consensus 134 ~~~~~~~~~~~~~~i~v--~g~~va~a~~~ 161 (172)
T PRK05174 134 VINRKLVMGIADGRVLV--DGEEIYTAKDL 161 (172)
T ss_pred EecCCCCEEEEEEEEEE--CCEEEEEEEee
Confidence 5 4678999999996 89999998543
No 70
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=97.15 E-value=0.0093 Score=41.05 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=46.7
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEE
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCA 153 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~ 153 (166)
-.+||-.+++++...... . ..++........+++|.+|+.+|++|.++.+. .++ .+.+++.+. ++|+++.+
T Consensus 45 ~iahG~~t~a~~~~~~~~---~-~~~~~~~~~~~~~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~~--~~g~~v~~ 115 (122)
T cd03448 45 PILHGLCTYGFAARAVLE---A-FADGDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKVV--ERDVVVLS 115 (122)
T ss_pred ceehhHHHHHHHHHHHHH---H-hcCCCcceeEEEEEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEEc--cCCcEEEE
Confidence 458888888877543211 1 11223344456799999999999999998874 344 566666665 36666544
Q ss_pred E
Q 031046 154 S 154 (166)
Q Consensus 154 a 154 (166)
+
T Consensus 116 g 116 (122)
T cd03448 116 N 116 (122)
T ss_pred C
Confidence 3
No 71
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=97.11 E-value=0.0064 Score=41.60 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=39.0
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeC
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSG 132 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~g 132 (166)
.-.+||-.+++++...... . .+.........++++|++|+.+|+++.++.++....
T Consensus 50 ~~ivhG~~~~a~~~~~~~~---~-~~~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~ 105 (122)
T PF01575_consen 50 GPIVHGMLTLALASGLLGD---W-LGPNPPARLGRFNVRFRAPVFPGDTLTAEVEVTEKR 105 (122)
T ss_dssp SSB-BHHHHHHHHHHHHHH---H-HSTTECEEEEEEEEEESS--BTTEEEEEEEEEEEEE
T ss_pred CEEEccHHHHHHHHHHHHH---h-ccCccceEEEEEEEEEeccccCCCEEEEEEEEEEEE
Confidence 5579999999888643222 2 222234667789999999999999999999998643
No 72
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.09 E-value=0.0046 Score=47.50 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhhhhccCC--ceeEEEEEEEEEe-ecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEE
Q 031046 80 AIAAFSERMAIACARTVVAED--KEIFLGELGISYL-SAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHA 156 (166)
Q Consensus 80 ~l~sl~D~~~~~~~~~~~~~~--~~~vt~~l~i~fl-~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~ 156 (166)
.++.++|.......... ... ....|++++|+|. .|...++.+.++++....+......++++| |++|+++|.++-
T Consensus 174 ~l~~~~D~~~~~~~~~~-~~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~-d~~G~lvA~~~Q 251 (255)
T PF13622_consen 174 ALAFLSDAFPPATLRAF-SGPEWWFPATLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLW-DEDGRLVASSRQ 251 (255)
T ss_dssp HHHHHCTCCHHHHHHCH-TSS--B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEE-ETTS-EEEEEEE
T ss_pred HHHHHHHhcchhhcccc-CCccccccccceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEE-CCCCCEEEEEEE
Confidence 37778886522222221 111 3456999999984 577668899999999988888899999999 799999999987
Q ss_pred EEE
Q 031046 157 TFY 159 (166)
Q Consensus 157 t~~ 159 (166)
..+
T Consensus 252 ~~l 254 (255)
T PF13622_consen 252 EAL 254 (255)
T ss_dssp EEE
T ss_pred Eee
Confidence 655
No 73
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=97.00 E-value=0.005 Score=42.56 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=37.5
Q ss_pred ceeEEEEEEEEEeecCCCCCEEEEEEEEEE----eC---ccEEEEEEEEEECCCCcEEEE
Q 031046 101 KEIFLGELGISYLSAAPHNAELIMEASVVR----SG---RNVTVVAVEFKFNDTGKLVCA 153 (166)
Q Consensus 101 ~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~----~g---r~~~~~~~~i~~~~~g~~va~ 153 (166)
...+-.+.++.|++|+++|+.+.+++++.. .| ...+.++.+++ |++|+++++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~-~~~Ge~v~t 131 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYT-DQDGELVAT 131 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEE-CCCCCEEEe
Confidence 345667899999999999999999999863 22 23455667777 899999985
No 74
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=96.94 E-value=0.089 Score=38.36 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=59.3
Q ss_pred EEEEEEEeCCCCc---CC--CCCccHHHHH-HHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEE-EEEEEEEE
Q 031046 58 RLICHLSVKPAIL---NF--FGGIHGGAIA-AFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAEL-IMEASVVR 130 (166)
Q Consensus 58 ~~~~~~~~~~~~~---n~--~G~vhGG~l~-sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v-~~~a~v~~ 130 (166)
.++++..+.++.- ++ ..-+--|++. -.+-.+++..+......+...+...-+.+|.+++.+|+.+ .++.++.+
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~ 130 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKR 130 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEE
Confidence 6888888887742 21 1122334433 2333333222221111222233333489999999999886 88888877
Q ss_pred e---CccEEEEEEEEEECCCCcEEEEEEE
Q 031046 131 S---GRNVTVVAVEFKFNDTGKLVCASHA 156 (166)
Q Consensus 131 ~---gr~~~~~~~~i~~~~~g~~va~a~~ 156 (166)
. .+....++++++. +|+++++++-
T Consensus 131 ~~~~~~~~~~~~~~i~v--~g~~va~a~~ 157 (169)
T TIGR01749 131 VINRRLVMGIADGEVLV--DGRLIYTASD 157 (169)
T ss_pred EeecCCcEEEEEEEEEE--CCEEEEEEEC
Confidence 4 4568999999996 8899999654
No 75
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=96.90 E-value=0.029 Score=44.28 Aligned_cols=87 Identities=14% Similarity=0.017 Sum_probs=65.5
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhccC-----CceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCC
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVAE-----DKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTG 148 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~~-----~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g 148 (166)
..+|=-+++-+.|......+...... .....+++-++.|++|.+.++++..+.+....|....+.++.+| +.+|
T Consensus 192 ~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~-~~~G 270 (286)
T PRK10526 192 LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFY-TQDG 270 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEE-CCCC
Confidence 45788888877775433333221111 22346778889999999999999999999998888899999999 8999
Q ss_pred cEEEEEEEEEEee
Q 031046 149 KLVCASHATFYNT 161 (166)
Q Consensus 149 ~~va~a~~t~~~~ 161 (166)
+++|++.-.-++.
T Consensus 271 ~LvAs~~Qegl~r 283 (286)
T PRK10526 271 VLVASTVQEGVMR 283 (286)
T ss_pred CEEEEEEeeEEEE
Confidence 9999987665443
No 76
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=96.77 E-value=0.01 Score=52.13 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=63.2
Q ss_pred EEEEeCCCCcCC---------CCCccHHHHHHHHHHHHHHhhhhhccCCceeE-EEEEEEEEeecCCCCCEEEEEEEEEE
Q 031046 61 CHLSVKPAILNF---------FGGIHGGAIAAFSERMAIACARTVVAEDKEIF-LGELGISYLSAAPHNAELIMEASVVR 130 (166)
Q Consensus 61 ~~~~~~~~~~n~---------~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~v-t~~l~i~fl~p~~~g~~v~~~a~v~~ 130 (166)
+..+.+|-|.+. .-.+||-.+++++.... . ... ++.... ....+++|++|+.+||+|.++.+|..
T Consensus 552 ~sgD~nPiH~D~e~A~~s~fg~~Ia~G~l~~sl~~~l~---~-~~~-~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e 626 (663)
T TIGR02278 552 LSGDHFYAHMDEIAARESFFGKRVAHGYFVLSAAAGLF---V-DPA-PGPVLANYGLENLRFLEPVGPGDTIQVRLTVKR 626 (663)
T ss_pred hhCCCCcccCCHHHHhhCCCCCceeCHHHHHHHHHHHh---h-ccC-ccchhhhcccceEEEcCCCCCCCEEEEEEEEEE
Confidence 345566666663 22688888888775321 1 111 121111 12348999999999999999999974
Q ss_pred e------CccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 131 S------GRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 131 ~------gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
. ++..+.+++.++ +++|++|.++...+++
T Consensus 627 ~~~~~~~~~g~v~~~~~v~-nq~G~~Vl~~~~~~lv 661 (663)
T TIGR02278 627 KTPRDEKTYGVVEWAAEVV-NQNGEPVATYDVLTLV 661 (663)
T ss_pred EEecCCCCceEEEEEEEEE-cCCCCEEEEEEEHHhc
Confidence 4 112688888898 8999999999887653
No 77
>PLN02868 acyl-CoA thioesterase family protein
Probab=96.51 E-value=0.023 Score=47.13 Aligned_cols=82 Identities=10% Similarity=0.034 Sum_probs=63.4
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhcc-CCce--eEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcE
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVA-EDKE--IFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKL 150 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~-~~~~--~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~ 150 (166)
-.+|-..++.+.|......+..... .... ..+++-++.|++|+..++++..+.+....+......++++| +.+|++
T Consensus 325 ~~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~-~~~G~L 403 (413)
T PLN02868 325 QALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMF-NRKGEL 403 (413)
T ss_pred HHHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEEE-CCCCCE
Confidence 3578888889999765444332111 1222 45667799999999999999999999999888899999999 899999
Q ss_pred EEEEEE
Q 031046 151 VCASHA 156 (166)
Q Consensus 151 va~a~~ 156 (166)
||+..-
T Consensus 404 vAs~~Q 409 (413)
T PLN02868 404 VVSLTQ 409 (413)
T ss_pred EEEEEe
Confidence 998764
No 78
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=96.44 E-value=0.03 Score=43.98 Aligned_cols=87 Identities=9% Similarity=0.034 Sum_probs=66.1
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhcc-----CCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCC
Q 031046 74 GGIHGGAIAAFSERMAIACARTVVA-----EDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTG 148 (166)
Q Consensus 74 G~vhGG~l~sl~D~~~~~~~~~~~~-----~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g 148 (166)
-.+|--.++-+-|......+....+ ++-..++++=++.|+||.+.++++....+.-........++++++ +.+|
T Consensus 192 ~~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf-~r~G 270 (289)
T COG1946 192 PRLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQLF-DRDG 270 (289)
T ss_pred HHHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeeeEEE-cCCC
Confidence 4577777777888765444443322 233467777889999999999999999999888777799999999 7999
Q ss_pred cEEEEEEEEEEee
Q 031046 149 KLVCASHATFYNT 161 (166)
Q Consensus 149 ~~va~a~~t~~~~ 161 (166)
+++|...-.-++.
T Consensus 271 ~LiA~~~QEG~~r 283 (289)
T COG1946 271 QLIASVVQEGLIR 283 (289)
T ss_pred CEEEEEeeeEEEe
Confidence 9999876554443
No 79
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=96.42 E-value=0.021 Score=50.30 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=61.9
Q ss_pred EEEEeCCCCcCC---------CCCccHHHHHHHHHHHHHHhhhhhccCCceeE-EEEEEEEEeecCCCCCEEEEEEEEEE
Q 031046 61 CHLSVKPAILNF---------FGGIHGGAIAAFSERMAIACARTVVAEDKEIF-LGELGISYLSAAPHNAELIMEASVVR 130 (166)
Q Consensus 61 ~~~~~~~~~~n~---------~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~v-t~~l~i~fl~p~~~g~~v~~~a~v~~ 130 (166)
+....+|-|.+. .-.+||-.+++++-... .. .. ++.... ..--+++|++|+.+||+|.++.+|..
T Consensus 564 lsgD~nPiH~D~e~A~~~~fg~~ia~G~l~~sl~~~l~---~~-~~-~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~ 638 (675)
T PRK11563 564 LSGDTFYAHMDEIAAAANFFGGRVAHGYFVLSAAAGLF---VD-PA-PGPVLANYGLENLRFLTPVKPGDTIQVRLTCKR 638 (675)
T ss_pred hhCCCCccccCHHHHhhCCCCCceeCHHHHHHHHHHHh---hc-cC-ccchhhhcccceEEEcCCCCCCCEEEEEEEEEE
Confidence 345566666663 22577777777665321 11 11 111111 11137999999999999999999986
Q ss_pred eC------ccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 131 SG------RNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 131 ~g------r~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
.. +.++.++++++ +++|++|.++...+++
T Consensus 639 ~~~~~~~~~~~v~~~~~~~-nq~G~~V~~~~~~~lv 673 (675)
T PRK11563 639 KTPRRQAPYGVVRWDVEVT-NQDGELVATYDILTLV 673 (675)
T ss_pred EEecCCCCceEEEEEEEEE-ECCCCEEEEEEEHHhc
Confidence 41 23688888998 7999999999887654
No 80
>PLN02864 enoyl-CoA hydratase
Probab=96.38 E-value=0.069 Score=42.69 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred EEEEEeCCCCcCC---------CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEE
Q 031046 60 ICHLSVKPAILNF---------FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVR 130 (166)
Q Consensus 60 ~~~~~~~~~~~n~---------~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~ 130 (166)
.++...+|-|.++ .-++||-+.++++-.+.. .... ++......+++++|.+|+.+|+++.++.+.
T Consensus 205 ~lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~~---~~~~-~~~~~~~~~~~~rF~~PV~pGdtl~~~~~~-- 278 (310)
T PLN02864 205 RLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVI---KCFC-NGDPTAVKTISGRFLLHVYPGETLVTEMWL-- 278 (310)
T ss_pred HhhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHHH---hhhc-CCCCceEEEEEEEEcCCccCCCEEEEEEEe--
Confidence 3445556666554 345899887776643211 1111 222223457899999999999999776653
Q ss_pred eCccEEEEEEEEEECCCCcEEEEEEEEEE
Q 031046 131 SGRNVTVVAVEFKFNDTGKLVCASHATFY 159 (166)
Q Consensus 131 ~gr~~~~~~~~i~~~~~g~~va~a~~t~~ 159 (166)
.++ .+.+++.+ +++|+++.++.+++.
T Consensus 279 ~~~-~v~~~~~~--~~~g~~vl~G~a~~~ 304 (310)
T PLN02864 279 EGL-RVIYQTKV--KERNKAVLSGYVDLR 304 (310)
T ss_pred CCC-EEEEEEEE--ecCCeEEEEEEEEEe
Confidence 343 45566665 467888888888765
No 81
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=96.16 E-value=0.043 Score=38.20 Aligned_cols=81 Identities=16% Similarity=0.043 Sum_probs=55.4
Q ss_pred CccHHHHHHHHHHHHHHhhhhhcc--CCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEE
Q 031046 75 GIHGGAIAAFSERMAIACARTVVA--EDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 152 (166)
Q Consensus 75 ~vhGG~l~sl~D~~~~~~~~~~~~--~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va 152 (166)
.+|-=+++-+.|......+....+ .....+|++=++-|++|.+.++.+....+--+.......++++++++++|++||
T Consensus 45 ~~h~~~laY~SD~~~L~tal~~H~~~~~~~~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lva 124 (131)
T PF02551_consen 45 RIHSCALAYASDFTLLDTALQPHGFGFPKFQVSLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELVA 124 (131)
T ss_dssp CCCCCHHHHHCCCCCGGGGGCCGCCCCCCEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEE
T ss_pred hHhHHHHHHHhHHhHHHhhhccccccccccEEecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEEE
Confidence 456666777777543333332222 122244888899999999999999999998888777799999999558999999
Q ss_pred EEE
Q 031046 153 ASH 155 (166)
Q Consensus 153 ~a~ 155 (166)
++.
T Consensus 125 s~~ 127 (131)
T PF02551_consen 125 SVV 127 (131)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 82
>PLN02864 enoyl-CoA hydratase
Probab=95.15 E-value=0.26 Score=39.44 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=45.7
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEEEEEEe---Ccc-EEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 103 IFLGELGISYLSAAPHNAELIMEASVVRS---GRN-VTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 103 ~vt~~l~i~fl~p~~~g~~v~~~a~v~~~---gr~-~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
.+=.+-++.|+||++.++.+.+++++... |+. ++.++.++++.++|+++++...+++..
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~R 156 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLR 156 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEe
Confidence 45557789999999999999999998643 433 356777777336899999999998875
No 83
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=95.10 E-value=1.2 Score=34.58 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=65.8
Q ss_pred CEEEEEEEeCCCCcC--CCCCccHHHHHHHHHHHHHHh---hhhhccCCceeEEEEE-EEEEee-cCCCCCEEEEEEEEE
Q 031046 57 GRLICHLSVKPAILN--FFGGIHGGAIAAFSERMAIAC---ARTVVAEDKEIFLGEL-GISYLS-AAPHNAELIMEASVV 129 (166)
Q Consensus 57 g~~~~~~~~~~~~~n--~~G~vhGG~l~sl~D~~~~~~---~~~~~~~~~~~vt~~l-~i~fl~-p~~~g~~v~~~a~v~ 129 (166)
+++..++.+.+.... ..-.+|.+ ++|.+.-.+ +......+...+...+ ++.+.+ |.+.++.+.+.++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~P~----llD~~lq~~~~~~~~~~~~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~ 257 (295)
T PF14765_consen 182 GEALAEVRLPDDPASDPDPFVLHPA----LLDAALQAAGLALWEDDDRGRVFLPVSIERIRIFRAPPPPGDRLYVYARLV 257 (295)
T ss_dssp SEEEEEEECGTTTGGGGGGSSS-HH----HHHHHHHGHGCCHTSTTTTTSEEEEEEEEEEEESSS--SSTSEEEEEEEEE
T ss_pred ccceEEEEEEeeccCCCCceeECHH----HHHHHHHHHHHHhccccCCCCEEcccEeCEEEEEeccCCCCCEEEEEEEEe
Confidence 777888888865432 23445664 555443322 1111223444566666 577884 667789999999998
Q ss_pred EeCccEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031046 130 RSGRNVTVVAVEFKFNDTGKLVCASHATFYN 160 (166)
Q Consensus 130 ~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~ 160 (166)
+.+......++.++ |++|+++++...-.+.
T Consensus 258 ~~~~~~~~~dv~v~-d~~G~~~~~~~gl~~~ 287 (295)
T PF14765_consen 258 KSDDDTITGDVTVF-DEDGRVVAELEGLTFR 287 (295)
T ss_dssp STTTTEEEEEEEEE-ETTSBEEEEEEEEEEE
T ss_pred cccceEEEEEEEEE-CCCCCEEEEEccEEEE
Confidence 88989999999999 7999999998776554
No 84
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=95.03 E-value=0.73 Score=31.77 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=63.0
Q ss_pred CCEEEEEEEeCCCCc---CCCCCccHHHH-HHHHHHHHHHhhhhhc--cCCceeEEEEEEEEEeecCCCCCEEEEEEEEE
Q 031046 56 RGRLICHLSVKPAIL---NFFGGIHGGAI-AAFSERMAIACARTVV--AEDKEIFLGELGISYLSAAPHNAELIMEASVV 129 (166)
Q Consensus 56 ~g~~~~~~~~~~~~~---n~~G~vhGG~l-~sl~D~~~~~~~~~~~--~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~ 129 (166)
++...+.+.+...|. .+.+--|-|.+ .-.+=.++.+.+-... +.+...+..+++++|.+++..+.++.++.++.
T Consensus 19 ~~~~~~~~~~p~~h~~~~dh~~dh~~gmll~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~ 98 (132)
T PF03756_consen 19 DGRFRARLQWPRSHPFFFDHPGDHVPGMLLLEAARQAGIALAHRFYGVPLDHQFVLTSLDFTFSRFAELDVPADLTVRIT 98 (132)
T ss_pred CCEEEEEEEcCCCCccccCCCCCccChHHHHHHHHHHHHHhhccccCCCCCceEEEEEEEEEEccccccCCCEEEEEEEE
Confidence 555555555555433 22333444444 3344433333322211 23445677799999999988777888887776
Q ss_pred Ee-----CccEEEEEEEEEECCCCcEEEEEEEEEE
Q 031046 130 RS-----GRNVTVVAVEFKFNDTGKLVCASHATFY 159 (166)
Q Consensus 130 ~~-----gr~~~~~~~~i~~~~~g~~va~a~~t~~ 159 (166)
.. +.+...++++++ ++|+++++++.++-
T Consensus 99 ~~~~~~~~~~~~~~~v~~~--q~g~~~a~~~~~~t 131 (132)
T PF03756_consen 99 CRDRRGGRPRGLRFRVTVS--QGGRVVATASMTFT 131 (132)
T ss_pred eccccCCccceEEEEEEEE--ECCEEEEEEEEEEE
Confidence 43 234677888888 59999999998874
No 85
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=94.99 E-value=0.56 Score=36.98 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=60.2
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhc-cCCce--eEEEEEEEEEeec-CCCCCEEEEEEEEEEeCccEEEEEEEEEECCCC
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVV-AEDKE--IFLGELGISYLSA-APHNAELIMEASVVRSGRNVTVVAVEFKFNDTG 148 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~-~~~~~--~vt~~l~i~fl~p-~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g 148 (166)
--.+|--+++.+.|......+.... ..+.. .++.+=+|.|+++ ++.++++.-++.....+...+++++.+| ++||
T Consensus 207 D~r~h~~~vaylSD~~ll~Ta~~~h~~~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw-~rdG 285 (294)
T KOG3016|consen 207 DERLHRWVVAYLSDLILLTTALNPHNREGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLW-NRDG 285 (294)
T ss_pred hhhhceehHhhhhhHHHHHhcccchhhccceeeecccceeEEEecccccccceEEEEEEeccccCcceeEeeeEE-ccCC
Confidence 4556777888888976544433211 12212 2344557999997 8999999999999999999999999999 7999
Q ss_pred cEEEEE
Q 031046 149 KLVCAS 154 (166)
Q Consensus 149 ~~va~a 154 (166)
++++..
T Consensus 286 ~l~~s~ 291 (294)
T KOG3016|consen 286 RLICST 291 (294)
T ss_pred cEEEEe
Confidence 998764
No 86
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=92.39 E-value=3.3 Score=32.11 Aligned_cols=97 Identities=9% Similarity=0.113 Sum_probs=63.4
Q ss_pred CCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEe-Ccc
Q 031046 56 RGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRS-GRN 134 (166)
Q Consensus 56 ~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~-gr~ 134 (166)
+......+.+.......+|.+.--.+..|+-++.-..... . ....+++|+|.+.+..|+.+.+...+... +..
T Consensus 163 ~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~----~--~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~ 236 (261)
T PF01643_consen 163 EPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFLE----K--YQIKSIDINYKKEIRYGDTITSYTEVEKDEEED 236 (261)
T ss_dssp TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHC----C--EEEEEEEEEE-S--BTT-EEEEEEEEEEECCTT
T ss_pred hhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhhc----c--CCcEEEEEEEccccCCCCEEEEEEEEcccccCC
Confidence 3345677888888888899999999988875543332211 1 22458999999999999999999887543 444
Q ss_pred EEEEEEEEEECCCCcEEEEEEEEEE
Q 031046 135 VTVVAVEFKFNDTGKLVCASHATFY 159 (166)
Q Consensus 135 ~~~~~~~i~~~~~g~~va~a~~t~~ 159 (166)
.....-.+. +++|+.+|++...+.
T Consensus 237 ~~~~~h~i~-~~~g~~~~~~~~~W~ 260 (261)
T PF01643_consen 237 GLSTLHEIR-NEDGEEVARARTEWQ 260 (261)
T ss_dssp EEEEEEEEE-CT-TCEEEEEEEEEE
T ss_pred ceEEEEEEE-cCCCceEEEEEEEEc
Confidence 556677788 566999999987763
No 87
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=90.90 E-value=3.3 Score=31.78 Aligned_cols=60 Identities=7% Similarity=-0.007 Sum_probs=51.9
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEeeccC
Q 031046 103 IFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTPIA 164 (166)
Q Consensus 103 ~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~~~~ 164 (166)
.+.....++++||...|+.++++.+.....+..+.-+.++. + .|..+....++|+.++.+
T Consensus 56 WiV~~~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~-~-~gg~Lie~~a~wilmn~d 115 (250)
T COG3884 56 WIVRRTEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLD-G-RGGGLIEIEAFWILMNRD 115 (250)
T ss_pred EEEEEEEEEEeeccccCCcceEEEeeccccceEEEEEEEEe-c-CCCcEEEEEEEEEEEccc
Confidence 34568999999999999999999999999999999999998 5 677777888888877543
No 88
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=82.51 E-value=9.4 Score=29.34 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=48.8
Q ss_pred EEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEE
Q 031046 63 LSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEF 142 (166)
Q Consensus 63 ~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i 142 (166)
|++.-.....+|.+.--.+-+++.+..+.-...... ...+++.|.+|+.+|+.+++..++...+.. .++
T Consensus 157 f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~------p~r~~l~y~keva~G~~iti~~e~~~~~s~-----~~f 225 (250)
T COG3884 157 FPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYG------PLRLTLEYVKEVAPGEKITIVYEVHPLESK-----HQF 225 (250)
T ss_pred ceeEEEeeccccccccceehHHHHHHHhhhhHhhcc------cceeEEEEEcccCCCCeEEEEEEEcccCce-----eee
Confidence 333333344455555666666666554433333222 247899999999999999999998876654 333
Q ss_pred EECCCCcEEEEE
Q 031046 143 KFNDTGKLVCAS 154 (166)
Q Consensus 143 ~~~~~g~~va~a 154 (166)
. .||.+.+.+
T Consensus 226 ~--~d~~v~~lt 235 (250)
T COG3884 226 T--SDGQVNALT 235 (250)
T ss_pred c--CCcceEEEE
Confidence 3 355555544
No 89
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=82.28 E-value=8.5 Score=39.43 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=46.1
Q ss_pred EEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031046 108 LGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 161 (166)
Q Consensus 108 l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~~~~ 161 (166)
-++...+|.+.|+...+..++.+...+.+..++.++ |++|+++++-...-+.+
T Consensus 2521 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~-~~~g~~~~~~~~~~~~~ 2573 (2582)
T TIGR02813 2521 GEFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELY-HQDGRLSSEMKSAKVTI 2573 (2582)
T ss_pred ceEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEE-CCCCcEEEEEeCCeEEE
Confidence 367888888889999999999999999999999999 89999999877655543
No 90
>PLN02370 acyl-ACP thioesterase
Probab=76.65 E-value=44 Score=28.05 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=63.1
Q ss_pred EEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEE-----Ee-Cc
Q 031046 60 ICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVV-----RS-GR 133 (166)
Q Consensus 60 ~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~-----~~-gr 133 (166)
...+.+.......+|.+.-..+..|+-++.-.-.. .++ ...+++|+|.+.+..|+.|....... .. ..
T Consensus 303 ~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l----~~~--~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~ 376 (419)
T PLN02370 303 RKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIM----ESH--ELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTA 376 (419)
T ss_pred eeeeeecHHHCcccCccccHHHHHHHHhhCchhhh----hcc--eEEEEEEEEcccCCCCCEEEEEEeecccccccccCC
Confidence 34467777778888999999888877553322111 122 24589999999999999998776642 11 11
Q ss_pred cEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031046 134 NVTVVAVEFKFNDTGKLVCASHATFYNTP 162 (166)
Q Consensus 134 ~~~~~~~~i~~~~~g~~va~a~~t~~~~~ 162 (166)
....+...+. .++|+.++++...+...+
T Consensus 377 ~~~~~~h~~~-~~dG~e~a~a~t~Wr~~~ 404 (419)
T PLN02370 377 GDVECQHLLR-LEDGAEIVRGRTEWRPKH 404 (419)
T ss_pred CcceEEEEEE-cCCCeEEEEEEEEEEECC
Confidence 1112333344 679999999999987553
No 91
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=64.30 E-value=31 Score=26.83 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=59.9
Q ss_pred EEEEEEEeCCCCcCCCCC-ccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCccEE
Q 031046 58 RLICHLSVKPAILNFFGG-IHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVT 136 (166)
Q Consensus 58 ~~~~~~~~~~~~~n~~G~-vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~ 136 (166)
+++...+......|+.|. +||-.+++++-.++.-.. +. ....++-+-|+|+-.++++++.++....|+-.
T Consensus 185 rIHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~~~~-----pq---~~~Rf~fR~L~p~f~~~~lti~~~l~~~g~~~- 255 (273)
T COG3777 185 RIHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQPFL-----PQ---PIRRFRFRNLSPAFPNETLTICGSLSGSGGAE- 255 (273)
T ss_pred eeeccCcceeeccCCCCceecchHHHHHHHHHhhhhc-----cc---cchheeccccccccCCCCeeEeeEecCCCceE-
Confidence 566666666677788775 899999998865432211 11 13467777889999999999999998887632
Q ss_pred EEEEEEEECCCCcEEEEEEEE
Q 031046 137 VVAVEFKFNDTGKLVCASHAT 157 (166)
Q Consensus 137 ~~~~~i~~~~~g~~va~a~~t 157 (166)
.-.. +.++.++.+|++.
T Consensus 256 ---~w~~-~~~~pv~mrarV~ 272 (273)
T COG3777 256 ---LWTI-RGDGPVAMRARVF 272 (273)
T ss_pred ---EEEe-cCCcchhheeeec
Confidence 2222 4677788887764
No 92
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=58.18 E-value=46 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=23.0
Q ss_pred cCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcE
Q 031046 115 AAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKL 150 (166)
Q Consensus 115 p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~ 150 (166)
..++++.++++++.....+......+...+|++|.+
T Consensus 11 GL~p~~~vtl~a~~~~~~g~~w~S~A~f~Ad~~G~V 46 (126)
T PF04775_consen 11 GLPPGQEVTLRARLTDDNGVQWQSYATFRADENGIV 46 (126)
T ss_dssp S--TT-EEEEEEEEE-TTS-EEEEEEEEE--TTS-E
T ss_pred CCCCCCEEEEEEEEEeCCCCEEEEEEEEEcCCCCeE
Confidence 334467999999999887777888888888888865
No 93
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=47.77 E-value=71 Score=20.30 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=26.9
Q ss_pred CCCCEEEEEEEEEEeCc-----cEEEEEEEEEECCCCcEEEEEEE
Q 031046 117 PHNAELIMEASVVRSGR-----NVTVVAVEFKFNDTGKLVCASHA 156 (166)
Q Consensus 117 ~~g~~v~~~a~v~~~gr-----~~~~~~~~i~~~~~g~~va~a~~ 156 (166)
++||.|.+++-+..... ....+.+++. |++|+.+.+...
T Consensus 12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~-dp~g~~v~~~~~ 55 (99)
T PF01835_consen 12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIK-DPSGNEVFRWSV 55 (99)
T ss_dssp -TTSEEEEEEEEEEECTTCSCESSEEEEEEEE-ETTSEEEEEEEE
T ss_pred CCCCEEEEEEEEeccccccccccCCceEEEEE-CCCCCEEEEEEe
Confidence 35788888888777652 1245667888 688888877665
No 94
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=45.95 E-value=79 Score=20.27 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=23.6
Q ss_pred EEEeecCCCCCE----EEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEE
Q 031046 110 ISYLSAAPHNAE----LIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 157 (166)
Q Consensus 110 i~fl~p~~~g~~----v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t 157 (166)
|.-..|.+ |+. +.++++..-- -..+...+. |.+|++++++..+
T Consensus 3 I~V~~P~p-g~~V~sp~~V~G~A~~F---Egtv~~rv~-D~~g~vl~e~~~~ 49 (88)
T PF10648_consen 3 IWVTAPAP-GDTVSSPVKVSGKARVF---EGTVNIRVR-DGHGEVLAEGFVT 49 (88)
T ss_pred eEEcCCCC-cCCcCCCEEEEEEEEEe---eeEEEEEEE-cCCCcEEEEeeEE
Confidence 44556665 543 3444432211 134566677 7888888666554
No 95
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.79 E-value=1.3e+02 Score=21.21 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEE
Q 031046 119 NAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATF 158 (166)
Q Consensus 119 g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~ 158 (166)
|..+.+.++|.|..+-+..+.+.+.+-..|+++......+
T Consensus 80 GAd~~lvG~VqKvS~Lil~~~~~v~Dv~tg~~v~~~~~di 119 (140)
T PF11684_consen 80 GADYVLVGEVQKVSNLILNMNVYVRDVETGKVVRGRSVDI 119 (140)
T ss_pred CCCEEEEEEEechhhhheeeeEEEEECCCCCEEeeeeeeE
Confidence 5667788888888888888888888556788887766554
No 96
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=37.09 E-value=38 Score=23.80 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=17.1
Q ss_pred EEEEEEe-ecCCCCCEEEEEEEEEEeCc
Q 031046 107 ELGISYL-SAAPHNAELIMEASVVRSGR 133 (166)
Q Consensus 107 ~l~i~fl-~p~~~g~~v~~~a~v~~~gr 133 (166)
++++=++ +-+..|++++|++++.|.|+
T Consensus 34 ~v~tmPVpk~I~~GeTvEIR~~l~reG~ 61 (137)
T PF12988_consen 34 TVETMPVPKKIKKGETVEIRCELKREGN 61 (137)
T ss_dssp EEEE----SS--TTEEEEEEEEEEESS-
T ss_pred EEEEeccccccCCCCEEEEEEEEecCce
Confidence 3444444 56777999999999999875
No 97
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=34.08 E-value=86 Score=19.63 Aligned_cols=24 Identities=0% Similarity=0.077 Sum_probs=19.8
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEE
Q 031046 103 IFLGELGISYLSAAPHNAELIMEA 126 (166)
Q Consensus 103 ~vt~~l~i~fl~p~~~g~~v~~~a 126 (166)
.+..+.++.++.++++|+.|.+.+
T Consensus 23 G~~~~v~l~lv~~~~vGD~VLVH~ 46 (76)
T TIGR00074 23 GIKRDVSLDLVGEVKVGDYVLVHV 46 (76)
T ss_pred CeEEEEEEEeeCCCCCCCEEEEec
Confidence 366678999998899999888765
No 98
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=32.93 E-value=87 Score=20.50 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=19.7
Q ss_pred ecCCCCCEEEEEEEEEEe--CccEEEEEEEEEECCCCc
Q 031046 114 SAAPHNAELIMEASVVRS--GRNVTVVAVEFKFNDTGK 149 (166)
Q Consensus 114 ~p~~~g~~v~~~a~v~~~--gr~~~~~~~~i~~~~~g~ 149 (166)
++...|+.+.+.+|+.+. .++++|+ +++ |..|.
T Consensus 7 ~~~~~g~~V~v~Gwv~~~R~~g~~~Fi--~Lr-D~~g~ 41 (108)
T cd04316 7 TPELDGEEVTVAGWVHEIRDLGGIKFV--ILR-DREGI 41 (108)
T ss_pred chhhCCCEEEEEEEEEeeeccCCeEEE--EEe-cCCee
Confidence 344468899999999753 2334444 445 44443
No 99
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=31.50 E-value=1.2e+02 Score=18.18 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=17.7
Q ss_pred CccEEEEEEEEEECCCCcEEEEEEE
Q 031046 132 GRNVTVVAVEFKFNDTGKLVCASHA 156 (166)
Q Consensus 132 gr~~~~~~~~i~~~~~g~~va~a~~ 156 (166)
-.+...+.+.+..+.+|+|+|....
T Consensus 29 D~~~~~vtV~V~~~~~G~L~A~v~y 53 (64)
T TIGR03786 29 DTTVHTVTVTVTDDEQGKLVATVIY 53 (64)
T ss_pred cCCEEEEEEEEEECCCCcEEEEEEE
Confidence 3456778888886678898876543
No 100
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=30.40 E-value=1.6e+02 Score=22.95 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=32.2
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecCCCCCEEEEE
Q 031046 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIME 125 (166)
Q Consensus 73 ~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~~~g~~v~~~ 125 (166)
...+||=+..++.-.+.+.. .+ +.+-.+.+++|-.|+-+|+++...
T Consensus 191 tpilHGlc~lg~~~riv~a~----~~---~a~y~~~kvrF~spV~pGdtll~~ 236 (272)
T KOG1206|consen 191 TPILHGLCTLGFSARIVGAQ----FP---PAVYKAQKVRFSSPVGPGDTLLVL 236 (272)
T ss_pred CchhhhHHHhhhhHHHHHHh----cC---chhhheeeeeecCCCCCchhHHHH
Confidence 56799988888776543322 11 345568899999999999866543
No 101
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=29.70 E-value=1.9e+02 Score=19.78 Aligned_cols=40 Identities=5% Similarity=-0.093 Sum_probs=29.3
Q ss_pred EEEEEEEEeecCC--CCCEEEEEEEEEEe-CccEEEEEEEEEE
Q 031046 105 LGELGISYLSAAP--HNAELIMEASVVRS-GRNVTVVAVEFKF 144 (166)
Q Consensus 105 t~~l~i~fl~p~~--~g~~v~~~a~v~~~-gr~~~~~~~~i~~ 144 (166)
.+.++++|++|.+ .|....+.+++... ......+.+.+..
T Consensus 52 ~l~V~t~~l~~~~~~~gslyq~iGEl~~~~~~~~~~L~ARV~r 94 (118)
T PF15490_consen 52 SLKVDTKLLEPFQARVGSLYQFIGELEHQPQDGGIVLKARVLR 94 (118)
T ss_pred EEEEEeeEccccccCCCCEEEEEEEEEEEcCCCcEEEEEEEEE
Confidence 3466778898876 78888888988887 4555667776654
No 102
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=28.31 E-value=1e+02 Score=19.53 Aligned_cols=6 Identities=17% Similarity=0.318 Sum_probs=2.6
Q ss_pred CCCCcE
Q 031046 145 NDTGKL 150 (166)
Q Consensus 145 ~~~g~~ 150 (166)
+.+|+.
T Consensus 59 d~~G~a 64 (92)
T smart00634 59 DANGIA 64 (92)
T ss_pred CCCCEE
Confidence 444443
No 103
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=27.64 E-value=2.1e+02 Score=21.51 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=27.0
Q ss_pred CCEEEEEEEEEEeCccEEEEEEEEEECCCCc
Q 031046 119 NAELIMEASVVRSGRNVTVVAVEFKFNDTGK 149 (166)
Q Consensus 119 g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~ 149 (166)
|+++.+.-+-++.|.++.-++..+| |-||.
T Consensus 100 ~~Rl~i~I~SI~~~~~IipV~L~vY-D~DG~ 129 (200)
T PF12508_consen 100 GQRLLITITSIEYGGNIIPVELSVY-DLDGQ 129 (200)
T ss_pred ccEEEEEEEEEEECCEEEEEEEEEE-CCCCC
Confidence 6899999999999999999999999 77775
No 104
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=27.53 E-value=29 Score=26.23 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=34.3
Q ss_pred EEEeCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEeecC
Q 031046 62 HLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAA 116 (166)
Q Consensus 62 ~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl~p~ 116 (166)
-+..+|...=..|+-|||.....++.+.. .+....+++++++++=+.|.
T Consensus 65 lw~~~P~lvIE~Gs~~GGSal~fA~~m~s------~Gq~~kvl~vdIdi~~~~p~ 113 (237)
T COG3510 65 LWELQPSLVIEFGSRHGGSALFFANMMIS------IGQPFKVLGVDIDIKPLDPA 113 (237)
T ss_pred HHhcCCceeEeeccccCchhhhhhHhHHh------cCCCceEEEEecccCcCChh
Confidence 34566776667899999999988884321 22356688888888776554
No 105
>PRK04143 hypothetical protein; Provisional
Probab=26.22 E-value=2.2e+02 Score=22.36 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC
Q 031046 2 AQQSSAKEVDPEDVSKVIVFLKEVG 26 (166)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (166)
-|+-++.++++++++..-++|....
T Consensus 42 ~n~r~p~~~~~~~l~~~~~~l~~~~ 66 (264)
T PRK04143 42 ANVRPALPLSDEYLNLQDAYLQDEN 66 (264)
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHH
Confidence 3677889999999999888888555
No 106
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=25.85 E-value=1.7e+02 Score=20.76 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=40.3
Q ss_pred EEEEEEEeecCCCCCEE----EEEEEEEEeCccEEE---EEEEEEECCCCcEEEEEEEEEEeeccCC
Q 031046 106 GELGISYLSAAPHNAEL----IMEASVVRSGRNVTV---VAVEFKFNDTGKLVCASHATFYNTPIAK 165 (166)
Q Consensus 106 ~~l~i~fl~p~~~g~~v----~~~a~v~~~gr~~~~---~~~~i~~~~~g~~va~a~~t~~~~~~~~ 165 (166)
.+++|+|-||..-|..| .-.+++-|.|-+-++ +.-++. =+|+.+..++-+++.+|.++
T Consensus 13 ~~i~V~YsrP~~kGR~IFG~LvPygkvWRtGAN~aT~i~f~~dv~--igGk~l~AG~Ysl~tiP~~~ 77 (145)
T PF11138_consen 13 TDITVDYSRPSVKGRKIFGGLVPYGKVWRTGANEATTITFSKDVT--IGGKKLKAGTYSLFTIPGED 77 (145)
T ss_pred eEEEEEECCCCcCCcccccccccCCCeecCCCCcceEEEECCCeE--ECCEEcCCeeEEEEEecCCC
Confidence 47899999999878544 334667777766432 222333 27899999999999888653
No 107
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=25.28 E-value=2.1e+02 Score=18.98 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=17.5
Q ss_pred ecCCCCCEEEEEEEEEEeCccEEEEEEE
Q 031046 114 SAAPHNAELIMEASVVRSGRNVTVVAVE 141 (166)
Q Consensus 114 ~p~~~g~~v~~~a~v~~~gr~~~~~~~~ 141 (166)
+++.+++.|++.++|.+..+. ..+++.
T Consensus 73 ~~vt~~~~Vri~GeVDk~~~~-~~IdV~ 99 (103)
T PF04076_consen 73 QTVTPDDKVRISGEVDKDWNK-TEIDVD 99 (103)
T ss_dssp ----TTSEEEEEEEEEEETTE-EEEEEE
T ss_pred cccCCCCEEEEEEEEeCCCCc-eEEEEE
Confidence 356777899999999987764 555543
No 108
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=25.03 E-value=1.2e+02 Score=19.76 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=16.5
Q ss_pred EEEEEEEEEeCccEEEEEEEEEEC-CCCcEEEEEE
Q 031046 122 LIMEASVVRSGRNVTVVAVEFKFN-DTGKLVCASH 155 (166)
Q Consensus 122 v~~~a~v~~~gr~~~~~~~~i~~~-~~g~~va~a~ 155 (166)
+.+-+.=++.|+-+.-++++++ + .+|+++++++
T Consensus 15 ~~v~v~~L~tg~Pv~ga~V~l~-~~~~~~~l~~g~ 48 (97)
T PF11974_consen 15 LLVWVTSLSTGKPVAGAEVELY-DSRNGQVLASGK 48 (97)
T ss_pred EEEEEeeCCCCCccCCCEEEEE-ECCCCcEeeeee
Confidence 3444444445555555555555 3 4555555543
No 109
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=24.14 E-value=2.5e+02 Score=19.37 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=35.1
Q ss_pred EEEEEeecCC-CCCEEEEEEEEEEeCcc---EEEEEEEEEECCCCcEEEEEEE
Q 031046 108 LGISYLSAAP-HNAELIMEASVVRSGRN---VTVVAVEFKFNDTGKLVCASHA 156 (166)
Q Consensus 108 l~i~fl~p~~-~g~~v~~~a~v~~~gr~---~~~~~~~i~~~~~g~~va~a~~ 156 (166)
++-..+++.+ -++.+.+.+++....+. .-.++++++ |.+|+++++-..
T Consensus 55 i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~-D~~g~~l~~r~~ 106 (149)
T PF11906_consen 55 IESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLL-DAQGQPLARRVF 106 (149)
T ss_pred EeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEE-CCCCCEEEEEEE
Confidence 3334555555 35689999999986554 667888999 899999877655
No 110
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=23.82 E-value=1.4e+02 Score=20.39 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=19.9
Q ss_pred eecCCCCCEEEEEEEEEEe--CccEEEEEEEEEECCCCc
Q 031046 113 LSAAPHNAELIMEASVVRS--GRNVTVVAVEFKFNDTGK 149 (166)
Q Consensus 113 l~p~~~g~~v~~~a~v~~~--gr~~~~~~~~i~~~~~g~ 149 (166)
+.+...|+.|.+.+||.+. -+.++|+ ++. |..|.
T Consensus 8 ~~~~~~g~~V~i~Gwv~~~R~~gk~~Fi--~Lr-D~~g~ 43 (135)
T cd04317 8 LRESHVGQEVTLCGWVQRRRDHGGLIFI--DLR-DRYGI 43 (135)
T ss_pred CChhHCCCEEEEEEeEehhcccCCEEEE--EEe-cCCee
Confidence 3444458889999999753 2224444 445 44444
No 111
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=23.61 E-value=1.4e+02 Score=17.40 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=16.7
Q ss_pred EeecCCCCCEEEEEEEEEEeCcc
Q 031046 112 YLSAAPHNAELIMEASVVRSGRN 134 (166)
Q Consensus 112 fl~p~~~g~~v~~~a~v~~~gr~ 134 (166)
+....++|+.+.+++++.+..++
T Consensus 41 ~~~~l~~g~~v~v~G~v~~~~~~ 63 (75)
T PF01336_consen 41 FREKLKEGDIVRVRGKVKRYNGG 63 (75)
T ss_dssp HHHTS-TTSEEEEEEEEEEETTS
T ss_pred HhhcCCCCeEEEEEEEEEEECCc
Confidence 34566779999999999887554
No 112
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=22.67 E-value=1.8e+02 Score=20.68 Aligned_cols=29 Identities=10% Similarity=0.223 Sum_probs=22.2
Q ss_pred EEEEEeCccEEEEEEEEEE--CCCCcEEEEE
Q 031046 126 ASVVRSGRNVTVVAVEFKF--NDTGKLVCAS 154 (166)
Q Consensus 126 a~v~~~gr~~~~~~~~i~~--~~~g~~va~a 154 (166)
.++-+.||+...=++.+|. |++|+.+..|
T Consensus 109 iRiss~Grrf~ie~a~vW~l~D~~g~~~GqA 139 (148)
T PF08670_consen 109 IRISSTGRRFRIERATVWNLIDEDGNYCGQA 139 (148)
T ss_pred EEEcCCCCeEEEeceEEEEEEcCCCCEEEEE
Confidence 4667889999988888875 6778766554
No 113
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=22.59 E-value=3.1e+02 Score=19.88 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=30.0
Q ss_pred CceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCcc
Q 031046 100 DKEIFLGELGISYLSAAPHNAELIMEASVVRSGRN 134 (166)
Q Consensus 100 ~~~~vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~ 134 (166)
+...++++-++.+..-++++++|.+...+.|..|.
T Consensus 40 d~~~i~vsGn~t~~wdi~P~DrI~~~~~~~~~eRG 74 (164)
T smart00675 40 DPDGLHISGNITVIWDVQPTDRISARVSVMHFERG 74 (164)
T ss_pred cCCeEEEeeeEEEEEecCCCCeEEEEEEEEEecCC
Confidence 44568888899999999889999999999998774
No 114
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=21.61 E-value=54 Score=26.77 Aligned_cols=60 Identities=5% Similarity=0.080 Sum_probs=37.7
Q ss_pred CCCCCCCCCCccchHHhhcC-ceEEEEEeCCE--EEEEEEeCCCCcCCCCCccHHHHHHHHHH
Q 031046 28 SSSIPDDCCTNDSYSNILGR-HIKVHKIQRGR--LICHLSVKPAILNFFGGIHGGAIAAFSER 87 (166)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~--~~~~~~~~~~~~n~~G~vhGG~l~sl~D~ 87 (166)
..+++.+++..+.|.+++.. ++++.-++.+. +.......+-..+..|.+||--..-|=|+
T Consensus 228 vACVGGGSNAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~ 290 (396)
T COG0133 228 VACVGGGSNAIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDE 290 (396)
T ss_pred EEeccCCcchhhhcccccCCCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcC
Confidence 34578899999999999884 57777776643 22222222223355789998766555553
No 115
>PF10029 DUF2271: Predicted periplasmic protein (DUF2271); InterPro: IPR014469 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.28 E-value=3e+02 Score=19.23 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=33.3
Q ss_pred CCceeEEEEEEEEEeecCCCCC-EEEEEEEEEEeCccEEEEEEEE
Q 031046 99 EDKEIFLGELGISYLSAAPHNA-ELIMEASVVRSGRNVTVVAVEF 142 (166)
Q Consensus 99 ~~~~~vt~~l~i~fl~p~~~g~-~v~~~a~v~~~gr~~~~~~~~i 142 (166)
++...++.+...+-..+++.|. .|.+++-....|+.+..+..++
T Consensus 76 ~G~~~~~~d~~~~~~~~l~~g~Y~l~vEaarE~g~~~l~~~~~~l 120 (139)
T PF10029_consen 76 PGKYTLSWDGTDDIGNPLPDGGYTLRVEAAREHGGRELVRIPFPL 120 (139)
T ss_pred CCccEEEEEccccccCccCCCcEEEEEEEEEEECCcEEEEEEEEe
Confidence 3555566666777778888776 7888888888888888888887
No 116
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=21.12 E-value=62 Score=24.42 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=22.8
Q ss_pred eCCCCcCCCCCccHHHHHHHHHHHHHHhhhhhccCCceeEEEEEEEEEe
Q 031046 65 VKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYL 113 (166)
Q Consensus 65 ~~~~~~n~~G~vhGG~l~sl~D~~~~~~~~~~~~~~~~~vt~~l~i~fl 113 (166)
+.|...=..|+.|||.+.-++|..... +....+++++++++-+
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~------~~~~~VigiDIdir~~ 73 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELL------GGKGKVIGIDIDIRPH 73 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHT------T---EEEEEES-GTT-
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHh------CCCceEEEEeCCcchh
Confidence 344444456999999999999853221 2455677777766555
No 117
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=20.61 E-value=3.3e+02 Score=19.47 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=33.7
Q ss_pred EEEEEEEEEeecCCCCCEEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEE
Q 031046 104 FLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 157 (166)
Q Consensus 104 vt~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t 157 (166)
..++|-++|..-+. | .|... |.-|.-.....-.+.|| +.+|+++|+++.+
T Consensus 17 ~~vELG~kF~~~~~-G-~vtgv-rfYk~~~ntgthtgsLW-sa~G~lLAt~tft 66 (149)
T PF13313_consen 17 GAVELGVKFRSSVA-G-QVTGV-RFYKGAGNTGTHTGSLW-SADGTLLATATFT 66 (149)
T ss_pred CceEEEeEEEecCC-c-EEEEE-EEEeCCCCCCceEEEEE-CCCCCEEEEEEEc
Confidence 44688888887775 6 34333 33333334455689999 7999999998765
No 118
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=20.58 E-value=3.4e+02 Score=19.59 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=22.3
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEEEEEE---eCcc----EEEEEEEEEECCCCc
Q 031046 103 IFLGELGISYLSAAPHNAELIMEASVVR---SGRN----VTVVAVEFKFNDTGK 149 (166)
Q Consensus 103 ~vt~~l~i~fl~p~~~g~~v~~~a~v~~---~gr~----~~~~~~~i~~~~~g~ 149 (166)
.+..+++-+|.||+. +.....+..+.. .++. .....+..|+++.|+
T Consensus 96 ilI~~~~S~Frr~i~-~~~F~g~~~~~~~~~~~~~~~~l~l~t~~~F~D~~GG~ 148 (157)
T PF10862_consen 96 ILITSFKSRFRRPIN-PRHFSGELEVTDMRVRDRTWPYLFLSTECRFWDDDGGR 148 (157)
T ss_dssp EEEEEE-EEE-S----TTSEEEEEEEE--EEE-SSS-EEEEEEEEEEE-----E
T ss_pred eeEeechhhhhcccC-cceEEEEEEEEEEEEeccCCceEEEeeEEEEEeCCCCc
Confidence 567799999999999 556666655532 2333 455667778434444
No 119
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=20.39 E-value=2.9e+02 Score=19.67 Aligned_cols=52 Identities=10% Similarity=0.156 Sum_probs=37.6
Q ss_pred ccchHHhhcCceEEEEEeCCEEEEEEEeCCCCcCCCCCccHHHHHHHHHHHHHHhh
Q 031046 38 NDSYSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACA 93 (166)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~~G~vhGG~l~sl~D~~~~~~~ 93 (166)
-+.|..+.+ .+++...+++.+.++|.+.=+.. ..++|-.+..+.+.++...+
T Consensus 81 ~GPFk~L~~-~W~F~pl~~~~ckV~f~ldfeF~---s~ll~~~~g~~f~~~a~~mv 132 (146)
T COG2867 81 DGPFKYLKG-GWQFTPLSEDACKVEFFLDFEFK---SRLLGALIGPVFKRLASKMV 132 (146)
T ss_pred cCChhhhcC-ceEEEECCCCceEEEEEEEeeeh---hHHHHHHHHHHHHHHHHHHH
Confidence 356766666 48898888888888888876665 55777777777777665443
No 120
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=20.04 E-value=2.1e+02 Score=17.10 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=24.7
Q ss_pred EEEEEEEEEEeCccEEEEEEEEEECCCCcEEEEEEEEE
Q 031046 121 ELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATF 158 (166)
Q Consensus 121 ~v~~~a~v~~~gr~~~~~~~~i~~~~~g~~va~a~~t~ 158 (166)
.-+..+...-.-......++++. +++|++++...++.
T Consensus 29 r~Rt~S~k~~~~~~~G~WrV~V~-~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 29 RWRTWSSKQNFPDQPGDWRVEVV-DEDGQVLGSLRFSV 65 (66)
T ss_pred CEEEEEEeecCCCCCcCEEEEEE-cCCCCEEEEEEEEE
Confidence 34444443333346677999999 89999998877653
Done!