BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031049
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 109 LQIDKEYVPGVWFPHCMLAPSVPTDRVGNVCNILAKVKLPLQGDVEHVRL 158
L +D VPG++ P+ A + G+ N LAK+ P G+ H +L
Sbjct: 284 LYLDYHLVPGLYAPNGCXAAT------GSALNWLAKLLAPEAGEAAHAQL 327
>pdb|4GFP|A Chain A, 2.7 Angstrom Resolution Structure Of 3-Phosphoshikimate 1-
Carboxyvinyltransferase (Aroa) From Coxiella Burnetii In
A Second Conformational State
Length = 462
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 26 ELNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPL-VDKFPISLSLFSVLPRKNNL 82
++ + + + +EP + V K DI PD +PL +D+FP+ L +V K L
Sbjct: 300 DIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVL 357
>pdb|3ROI|A Chain A, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3ROI|B Chain B, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3SLH|A Chain A, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|B Chain B, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|C Chain C, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|D Chain D, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|4EGR|A Chain A, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|B Chain B, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|C Chain C, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|D Chain D, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|E Chain E, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|F Chain F, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
Length = 441
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 26 ELNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPL-VDKFPISLSLFSVLPRKNNL 82
++ + + + +EP + V K DI PD +PL +D+FP+ L +V K L
Sbjct: 279 DIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVL 336
>pdb|3TR1|A Chain A, Structure Of A 3-Phosphoshikimate
1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
Length = 441
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 26 ELNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPL-VDKFPISLSLFSVLPRKNNL 82
++ + + + +EP + V K DI PD +PL +D+FP+ L +V K L
Sbjct: 279 DIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVL 336
>pdb|1L4I|A Chain A, Crystal Structure Of The Periplasmic Chaperone Sfae
pdb|1L4I|B Chain B, Crystal Structure Of The Periplasmic Chaperone Sfae
Length = 206
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 27 LNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPLVD-----KFPISLSLFSVLPRKNN 81
L +I PE + + L VT K ++ I + +F I+ LFS+ +K N
Sbjct: 4 LGATRVIYPEGQKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKEN 63
Query: 82 LLCLLIAQSLNLRELHDNLY 101
L ++ A + + E ++L+
Sbjct: 64 TLRIIDATNGQMPEDRESLF 83
>pdb|1MZP|A Chain A, Structure Of The L1 Protuberance In The Ribosome
pdb|1PNU|5 Chain 5, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|5 Chain 5, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|7 Chain 7, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|7 Chain 7, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|7 Chain 7, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|7 Chain 7, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|7 Chain 7, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 217
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 32 LIKPEDEPHITLLVTQPCSKPEDILPDSIPLVD 64
L+K +D+P + + + KPED+ ++I +++
Sbjct: 156 LVKTKDQPQVQVFIGTEDXKPEDLAENAIAVLN 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,990,219
Number of Sequences: 62578
Number of extensions: 196842
Number of successful extensions: 426
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 9
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)