BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031049
         (166 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q13Z16|TIG_BURXL Trigger factor OS=Burkholderia xenovorans (strain LB400) GN=tig
           PE=3 SV=1
          Length = 448

 Score = 33.5 bits (75), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 13  LKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPLVDKFPISLSL 72
           +K++++D++  + EL++PN +  +D+  +  +  Q      D+    +P     PI  ++
Sbjct: 297 VKNQVMDALLKISELDVPNALIEQDQERLVAMARQ------DLEQRGVPNAKDAPIPAAM 350

Query: 73  FSVLPRKNNLLCLLIAQSLNLRELH 97
           F     +   L L++A+ +   EL 
Sbjct: 351 FKEQAERRVKLGLVLAELVKANELQ 375


>sp|B2T3Z9|TIG_BURPP Trigger factor OS=Burkholderia phytofirmans (strain DSM 17436 /
           PsJN) GN=tig PE=3 SV=1
          Length = 448

 Score = 33.5 bits (75), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 13  LKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPLVDKFPISLSL 72
           +K++++D++  + EL++PN +  +D+  +  +  Q      D+    +P     PI  ++
Sbjct: 297 VKNQVMDALLKISELDVPNALIEQDQERLVAMARQ------DLEQRGVPNAKDAPIPAAM 350

Query: 73  FSVLPRKNNLLCLLIAQSLNLRELH 97
           F     +   L L++A+ +   EL 
Sbjct: 351 FKEQAERRVKLGLVLAELVKANELQ 375


>sp|P34731|FAS1_CANAX Fatty acid synthase subunit beta OS=Candida albicans GN=FAS1 PE=3
            SV=1
          Length = 2037

 Score = 32.3 bits (72), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 17   ILDSMKLVRELNIPNLIKPE---DEPHITLLVTQPCSKPEDILPDSIPLVDKFPISLSLF 73
            I D +  + E +I  LIK E   DE  I ++      KP  +   S+ ++D   +   + 
Sbjct: 1058 IGDILNSIHEGHIARLIKEEYAGDESKIPVVEYFGGKKPASVSATSVNIIDGNQVVYEID 1117

Query: 74   SVLPRKNNLLCLLIAQSLN 92
            S LP K   L LL    LN
Sbjct: 1118 SELPNKQEWLDLLAGTELN 1136


>sp|B2JGL4|TIG_BURP8 Trigger factor OS=Burkholderia phymatum (strain DSM 17167 / STM815)
           GN=tig PE=3 SV=1
          Length = 448

 Score = 31.6 bits (70), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 13  LKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPLVDKFPISLSL 72
           +K++++D++  + EL++P  +  +D+  +  +  Q      D++   +P     PI   +
Sbjct: 297 VKNQVMDALLKISELDVPKALIEQDQQRLVEMARQ------DLVQRGVPNAKDAPIPAEM 350

Query: 73  FSVLPRKNNLLCLLIAQSLNLRELH 97
           F+    +   L L++A+ +   EL 
Sbjct: 351 FAEQAERRVKLGLVLAELVKANELQ 375


>sp|Q8XYP8|TIG_RALSO Trigger factor OS=Ralstonia solanacearum (strain GMI1000) GN=tig
           PE=3 SV=1
          Length = 449

 Score = 30.0 bits (66), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 13  LKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPLVDKFPISLSL 72
           LK +++D++  V EL++P  +  +D+  +  +  +      D+    +P V   PI   +
Sbjct: 297 LKDQVMDALLKVAELDVPKSLIEQDQERLVEMARR------DLEARGMPNVKNMPIPAEM 350

Query: 73  FSVLPRKNNLLCLLIAQSLNLRELH 97
           F+    +   L L++A+ + +  L 
Sbjct: 351 FAQQAERRVKLGLVLAEVVKVNALE 375


>sp|Q2SWQ8|TIG_BURTA Trigger factor OS=Burkholderia thailandensis (strain E264 / ATCC
           700388 / DSM 13276 / CIP 106301) GN=tig PE=3 SV=1
          Length = 449

 Score = 29.6 bits (65), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 13  LKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPLVDKFPISLSL 72
           +K++++D++  + EL++P  +  +D+  +  +  Q      D+    +P     PI + +
Sbjct: 298 VKNQVMDALLKISELDVPKALIEQDQQRLVEMARQ------DLAQRGVPNAKDAPIPVEM 351

Query: 73  FSVLPRKNNLLCLLIAQ 89
           F+    +   L L++A+
Sbjct: 352 FAEQAERRVKLGLVLAE 368


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.141    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,810,762
Number of Sequences: 539616
Number of extensions: 2585851
Number of successful extensions: 5471
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5471
Number of HSP's gapped (non-prelim): 20
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)