Query 031049
Match_columns 166
No_of_seqs 166 out of 1017
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1514 LigT 2'-5' RNA ligase 100.0 1.4E-29 3E-34 189.2 14.3 157 1-164 1-164 (180)
2 PRK15124 2'-5' RNA ligase; Pro 100.0 3.4E-28 7.3E-33 181.6 12.6 149 1-163 5-159 (176)
3 TIGR02258 2_5_ligase 2'-5' RNA 100.0 2.8E-27 6.1E-32 176.6 15.4 156 1-164 1-165 (179)
4 PRK13679 hypothetical protein; 99.9 4.6E-27 1E-31 174.2 13.7 150 1-163 1-155 (168)
5 PF13563 2_5_RNA_ligase2: 2'-5 99.9 3.2E-25 6.8E-30 160.7 2.4 145 9-162 1-150 (153)
6 PHA02574 57B hypothetical prot 99.9 2.2E-22 4.8E-27 145.5 8.7 113 1-133 9-123 (149)
7 PF10469 AKAP7_NLS: AKAP7 2'5' 99.7 7.9E-16 1.7E-20 117.7 12.6 159 1-161 1-191 (209)
8 PLN00108 unknown protein; Prov 99.3 4.1E-11 8.8E-16 93.5 13.3 156 1-161 36-237 (257)
9 PF02834 LigT_PEase: LigT like 99.3 8.4E-13 1.8E-17 87.3 3.1 76 7-84 1-87 (87)
10 PF07823 CPDase: Cyclic phosph 99.2 4.5E-11 9.7E-16 90.7 9.0 162 1-164 1-184 (196)
11 PF05213 Corona_NS2A: Coronavi 98.8 6.8E-08 1.5E-12 72.9 9.0 116 2-128 7-130 (248)
12 PF09749 HVSL: Uncharacterised 98.6 9.9E-07 2.1E-11 68.9 12.5 121 5-129 46-189 (239)
13 TIGR03223 Phn_opern_protn puta 98.4 2.6E-06 5.7E-11 65.7 8.4 119 36-161 55-211 (228)
14 PF02834 LigT_PEase: LigT like 98.3 2.8E-07 6E-12 60.6 2.4 68 90-162 8-80 (87)
15 PHA02977 hypothetical protein; 97.6 0.00074 1.6E-08 48.5 8.5 109 30-144 61-189 (201)
16 PF06299 DUF1045: Protein of u 97.5 0.001 2.2E-08 48.8 8.4 105 49-161 14-151 (160)
17 PF08302 tRNA_lig_CPD: Fungal 95.7 0.28 6.1E-06 38.8 11.1 65 63-143 160-227 (257)
18 KOG2814 Transcription coactiva 94.1 0.23 5.1E-06 40.4 6.8 91 34-127 173-281 (345)
19 PF13563 2_5_RNA_ligase2: 2'-5 94.0 0.26 5.5E-06 34.9 6.4 74 4-77 75-148 (153)
20 PRK13679 hypothetical protein; 93.9 0.25 5.4E-06 36.3 6.3 69 84-161 4-77 (168)
21 TIGR02258 2_5_ligase 2'-5' RNA 93.6 0.6 1.3E-05 34.3 8.1 72 83-161 3-81 (179)
22 PF07823 CPDase: Cyclic phosph 93.2 0.25 5.4E-06 37.4 5.5 69 82-157 4-82 (196)
23 COG1514 LigT 2'-5' RNA ligase 93.0 0.62 1.4E-05 34.9 7.3 75 83-161 3-81 (180)
24 PRK15124 2'-5' RNA ligase; Pro 89.2 2.3 4.9E-05 31.4 7.0 76 81-160 5-83 (176)
25 KOG3102 Uncharacterized conser 87.0 1.3 2.9E-05 34.0 4.5 88 36-128 119-217 (269)
26 PHA02574 57B hypothetical prot 70.8 9 0.00019 27.8 4.3 31 14-45 88-118 (149)
27 PF10469 AKAP7_NLS: AKAP7 2'5' 67.0 37 0.0008 25.5 7.2 45 120-164 41-97 (209)
28 PF08975 2H-phosphodiest: Doma 52.3 10 0.00022 26.4 1.7 37 8-44 21-59 (118)
29 COG5255 Uncharacterized protei 49.7 39 0.00085 26.0 4.5 35 10-44 51-87 (239)
30 COG3799 Mal Methylaspartate am 41.2 98 0.0021 25.4 5.8 83 13-109 209-297 (410)
31 COG5255 Uncharacterized protei 40.5 19 0.00041 27.7 1.6 73 5-77 143-227 (239)
32 PHA02977 hypothetical protein; 37.7 33 0.00072 24.9 2.5 39 32-70 158-197 (201)
33 PF04571 Lipin_N: lipin, N-ter 37.5 51 0.0011 22.7 3.2 27 62-88 41-67 (110)
34 PLN00108 unknown protein; Prov 36.4 82 0.0018 25.1 4.7 45 120-164 90-145 (257)
35 PF10105 DUF2344: Uncharacteri 34.8 39 0.00085 25.3 2.6 28 94-124 18-45 (187)
36 COG3795 Uncharacterized protei 34.0 98 0.0021 21.7 4.3 29 1-29 1-41 (123)
37 PRK06646 DNA polymerase III su 33.4 38 0.00082 24.7 2.3 13 116-128 53-65 (154)
38 COG5011 Uncharacterized protei 30.9 92 0.002 23.9 4.0 42 82-126 4-48 (228)
39 PF07476 MAAL_C: Methylasparta 29.4 20 0.00043 28.0 0.2 85 11-109 47-137 (248)
40 PF14202 TnpW: Transposon-enco 29.2 55 0.0012 17.8 1.9 24 2-25 11-34 (37)
41 PF11111 CENP-M: Centromere pr 29.2 1E+02 0.0022 23.1 3.9 29 79-107 127-155 (176)
42 PF09749 HVSL: Uncharacterised 28.8 1.6E+02 0.0035 22.7 5.3 43 3-45 142-188 (239)
43 PF06299 DUF1045: Protein of u 27.7 46 0.001 24.5 1.9 44 35-78 105-151 (160)
44 PF07485 DUF1529: Domain of Un 27.3 1.3E+02 0.0028 21.0 4.1 54 50-105 68-121 (123)
45 PRK05728 DNA polymerase III su 27.1 55 0.0012 23.3 2.2 13 116-128 53-65 (142)
46 COG0685 MetF 5,10-methylenetet 26.1 85 0.0018 25.2 3.3 36 121-163 81-116 (291)
47 PF11080 DUF2622: Protein of u 25.5 1.1E+02 0.0024 20.5 3.2 38 3-40 9-47 (96)
48 PF08285 DPM3: Dolichol-phosph 23.2 1E+02 0.0022 20.3 2.8 19 11-29 71-89 (91)
49 COG1980 Archaeal fructose 1,6- 22.5 1.9E+02 0.0042 23.4 4.6 69 71-149 281-365 (369)
50 PF04364 DNA_pol3_chi: DNA pol 20.9 69 0.0015 22.6 1.7 13 116-128 53-65 (137)
51 PRK00907 hypothetical protein; 20.3 1.2E+02 0.0026 20.1 2.6 62 39-102 16-84 (92)
No 1
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-29 Score=189.15 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=131.2
Q ss_pred CceEEEEecChhHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEeecCC-----CCChhhhhcccCCCcCceeEEEeeeee
Q 031049 1 MQYAIKLYFDDALKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQP-----CSKPEDILPDSIPLVDKFPISLSLFSV 75 (166)
Q Consensus 1 m~~~i~l~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~~~~-----~~~~~~~l~~~~~~~~~f~l~l~~~g~ 75 (166)
|=|||++.+|+++++.|.++++.++..+...|+ ..+|+||||+|+++ .+.+.++|.++++.. ||+|+++|+|+
T Consensus 1 ~RlFiAl~~p~~i~~~i~~~~~~~~~~~~~k~v-~~en~HiTL~flGev~e~~~~~l~~~l~~i~~~~-~f~i~l~g~g~ 78 (180)
T COG1514 1 MRLFIALDPPAEIAERLARIRARLKGARAIKWV-EPENLHITLKFLGEVDEDKADELIEALARIAAPE-PFPITLDGAGS 78 (180)
T ss_pred CeeEEEecCCHHHHHHHHHHHHhcCcccccccc-cccCceEEEEccCCcCchHHHHHHHHHHHhhcCC-ceEEEEeeEcc
Confidence 668999999999999999999999987522233 67899999999754 677888888888777 99999999999
Q ss_pred cCC--CCcEEEEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecCCCCchhHHHHHHHHhhcCcCceEEE
Q 031049 76 LPR--KNNLLCLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAPSVPTDRVGNVCNILAKVKLPLQGDV 153 (166)
Q Consensus 76 F~~--~~~vl~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar~~~~~~~~~~~~~l~~~~~p~~~~v 153 (166)
|++ +++|+|+++.++++|.+|++.+.+.+...| +....++ |+|||||||+.......++...+.+.... ++.|
T Consensus 79 F~~~~~~rvi~~~v~~~~~L~~L~~~l~~~~~~~g--~~~~~r~--F~PHvTl~r~k~~~~~~~~~~~~~~~~~~-~~~v 153 (180)
T COG1514 79 FPNPRRPRVIWVGVEETEELRALAEELERALARLG--LRPEERP--FVPHVTLARVKSKDKLVEALGEFKNVEFG-EMEV 153 (180)
T ss_pred cCCCCCCcEEEEcCCCcHHHHHHHHHHHHHHHhcC--CCCCCCC--cCCCEEEEeecccchhhhhhhhhcccccc-ceEe
Confidence 995 799999999888899999999999999998 4555565 99999999977655666666666653333 7799
Q ss_pred eEEEEEecCCC
Q 031049 154 EHVRLVQLPPN 164 (166)
Q Consensus 154 ~~i~L~~~~p~ 164 (166)
++++||+|..+
T Consensus 154 d~~~L~~S~l~ 164 (180)
T COG1514 154 DRFSLYSSTLT 164 (180)
T ss_pred eEEEEEEEeeC
Confidence 99999999764
No 2
>PRK15124 2'-5' RNA ligase; Provisional
Probab=99.96 E-value=3.4e-28 Score=181.56 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=115.9
Q ss_pred CceEEEEecChhHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEeecCC-----CCChhhhhcccCCCcCceeEEEeeeee
Q 031049 1 MQYAIKLYFDDALKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQP-----CSKPEDILPDSIPLVDKFPISLSLFSV 75 (166)
Q Consensus 1 m~~~i~l~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~~~~-----~~~~~~~l~~~~~~~~~f~l~l~~~g~ 75 (166)
|=+||++.+|+++++++.++++.+.......|+ .++|+||||.|+++ ++.+.++++++ ..+||+++++|+|+
T Consensus 5 ~RlFiAl~~p~~~~~~l~~~~~~~~~~~~~rwv-~~~nlHiTL~FlG~v~~~~~~~l~~~l~~~--~~~pF~l~l~~~g~ 81 (176)
T PRK15124 5 KRLFFAIDLPDEIRQQIIHWRATHFPPEAGRPV-AAANLHLTLAFLGEVSAEKQQALSQLAGRI--RQPGFTLTLDDAGQ 81 (176)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHhccccCcccc-cccccEEEEEecCCCCHHHHHHHHHHHHhc--ccCCeEEEECcccC
Confidence 458999999999999999999888653222343 57899999999876 34455555554 46899999999999
Q ss_pred cCCCCcEEEEEec-CChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecCCCCchhHHHHHHHHhhcCcCceEEEe
Q 031049 76 LPRKNNLLCLLIA-QSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAPSVPTDRVGNVCNILAKVKLPLQGDVE 154 (166)
Q Consensus 76 F~~~~~vl~l~~~-~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar~~~~~~~~~~~~~l~~~~~p~~~~v~ 154 (166)
||+ |+|+|++++ +++.|.+||+++.++++..| +..+.++ |+|||||||....... +.....+..|.|+
T Consensus 82 Fp~-prvlwlg~~~~~~~L~~L~~~l~~~l~~~G--~~~e~r~--f~PHiTLaR~~~~~~~------~~~~~~~~~~~v~ 150 (176)
T PRK15124 82 WPR-SRVVWLGMRQPPRGLLQLANMLRSQAARSG--CYQSPQP--FHPHITLLRDASRPVA------IPPPGFNWSFPVT 150 (176)
T ss_pred cCC-CCEEEEEcCCCCHHHHHHHHHHHHHHHHcC--CCCCCCC--CCCCEeeccCCCCccc------ccCCCCCCceEcC
Confidence 984 899999996 46799999999999999999 4666677 9999999996543211 1111223468899
Q ss_pred EEEEEecCC
Q 031049 155 HVRLVQLPP 163 (166)
Q Consensus 155 ~i~L~~~~p 163 (166)
++.||+|..
T Consensus 151 ~~~L~~S~l 159 (176)
T PRK15124 151 EFTLYASSF 159 (176)
T ss_pred EEEEEEEec
Confidence 999999964
No 3
>TIGR02258 2_5_ligase 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.
Probab=99.95 E-value=2.8e-27 Score=176.59 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=122.3
Q ss_pred CceEEEEecChhHHHHHHHHHHHHHHh-cCCCCCCCCCCCeeEEeecCC-----CCChhhhhcccCCCcCceeEEEeeee
Q 031049 1 MQYAIKLYFDDALKSKILDSMKLVREL-NIPNLIKPEDEPHITLLVTQP-----CSKPEDILPDSIPLVDKFPISLSLFS 74 (166)
Q Consensus 1 m~~~i~l~~~~~~~~~i~~l~~~L~~~-~~~~~~~~~~~~HiTL~~~~~-----~~~~~~~l~~~~~~~~~f~l~l~~~g 74 (166)
|=+||++.+++++.++|.++++.+++. ....+. +++++||||.|.++ .+.+.+.+++++ .++|+++++|+|
T Consensus 1 ~R~FiAl~~p~~~~~~l~~~~~~l~~~~~~~r~~-~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~--~~~f~l~l~~~~ 77 (179)
T TIGR02258 1 MRLFIAIDLPPEIREQLSRIQRKLKSPLDGIKWV-PPENLHITLKFLGEVDEEQVEELEDALAKIA--EPPFTLKLEGIG 77 (179)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHhhccCCCcEEC-ChHHCEEEEEEccCCCHHHHHHHHHHHHHhc--CCCeEEEEeeee
Confidence 668999999999999999999999842 222332 67799999999754 455777787776 367999999999
Q ss_pred ecCC--CCcEEEEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecCCCCch-hHHHHHHHHhhcCcCceE
Q 031049 75 VLPR--KNNLLCLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAPSVPTD-RVGNVCNILAKVKLPLQG 151 (166)
Q Consensus 75 ~F~~--~~~vl~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar~~~~~-~~~~~~~~l~~~~~p~~~ 151 (166)
+|++ +++|+|++++.+++|.+|++++.+.+...|. ..+.++ |+|||||||..... .+.+.++.... ..+.+|
T Consensus 78 ~F~~~~~~~vl~l~~~~~~~L~~L~~~l~~~~~~~g~--~~~~~~--f~PHiTlar~~~~~~~~~~~~~~~~~-~~~~~~ 152 (179)
T TIGR02258 78 VFGNPKRPRVLWAGVEQSEELTQLHADLERELAKLGF--SKEERP--FTPHITLARKKSGKPGVPEFLQEFAN-EEFGSF 152 (179)
T ss_pred eCCCCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHcCC--CCCCCC--cCCCEEEEEecCCcHhHHHHHHHhCC-CCCCce
Confidence 9986 5789999998888999999999999999884 333344 99999999866543 33333333333 247899
Q ss_pred EEeEEEEEecCCC
Q 031049 152 DVEHVRLVQLPPN 164 (166)
Q Consensus 152 ~v~~i~L~~~~p~ 164 (166)
+|++|+||+|...
T Consensus 153 ~v~~i~L~~S~~~ 165 (179)
T TIGR02258 153 HVDEFHLYSSTLT 165 (179)
T ss_pred EeeEEEEEEeecc
Confidence 9999999999754
No 4
>PRK13679 hypothetical protein; Provisional
Probab=99.95 E-value=4.6e-27 Score=174.20 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=123.5
Q ss_pred CceEEEEecChhHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEeecCC-----CCChhhhhcccCCCcCceeEEEeeeee
Q 031049 1 MQYAIKLYFDDALKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQP-----CSKPEDILPDSIPLVDKFPISLSLFSV 75 (166)
Q Consensus 1 m~~~i~l~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~~~~-----~~~~~~~l~~~~~~~~~f~l~l~~~g~ 75 (166)
|.|+|++.+|+++.+.+.++++.+...+ ...+|||||.|.++ .+.+.++++++++...||+++++++|+
T Consensus 1 ~~~~iai~~p~~~~~~l~~~~~~~~~~~------~~v~pHITL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~l~~~~~ 74 (168)
T PRK13679 1 MKYGIVLFPSKKIQDFANSYRKRYDPHY------ALIPPHITLKEPFEISDEQLDSIVEELRAIASETKPFTLHVTKVSS 74 (168)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhhCccc------ccCCCceEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 8999999999999999999988775321 22467999998643 466788998998888999999999999
Q ss_pred cCCCCcEEEEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecCCCCchhHHHHHHHHhhcCcCceEEEeE
Q 031049 76 LPRKNNLLCLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAPSVPTDRVGNVCNILAKVKLPLQGDVEH 155 (166)
Q Consensus 76 F~~~~~vl~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar~~~~~~~~~~~~~l~~~~~p~~~~v~~ 155 (166)
|++.++|||+++++++.|.+||++++..+. + ..+.++ |+|||||||..+.++..++.+.+.+...+..++|++
T Consensus 75 F~~~~~vl~l~~~~~~~L~~L~~~l~~~~~--~---~~~~~~--f~PHiTlar~~~~~~~~~~~~~l~~~~~~~~~~v~~ 147 (168)
T PRK13679 75 FAPTNNVIYFKVEKTEELEELHERLHSGDF--Y---GEAEYA--FVPHITIGQGLSDDEHEDVLGQLKMADVDHEETIDR 147 (168)
T ss_pred CCCCCCEEEEEccCCHHHHHHHHHHHhccc--c---cccCCC--CCCeEEeeCCCCcHHHHHHHHHHhcCCcceeEEECe
Confidence 986679999999988999999999987653 1 223344 999999999988888888888887655667889999
Q ss_pred EEEEecCC
Q 031049 156 VRLVQLPP 163 (166)
Q Consensus 156 i~L~~~~p 163 (166)
|.||....
T Consensus 148 i~L~~~~~ 155 (168)
T PRK13679 148 FHLLYQLE 155 (168)
T ss_pred EEEEEECC
Confidence 99987643
No 5
>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A.
Probab=99.90 E-value=3.2e-25 Score=160.71 Aligned_cols=145 Identities=24% Similarity=0.301 Sum_probs=85.0
Q ss_pred cChhHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEeecCC----CCChhhhhcccCCCcCceeEEEeeeeecCCCCcEEE
Q 031049 9 FDDALKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQP----CSKPEDILPDSIPLVDKFPISLSLFSVLPRKNNLLC 84 (166)
Q Consensus 9 ~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~~~~----~~~~~~~l~~~~~~~~~f~l~l~~~g~F~~~~~vl~ 84 (166)
||+++.++|.++. +..+.... ...+|||||.+... .+.+.+.+.+++++.++|+++|+++|+|+++++|||
T Consensus 1 pp~~~~~~i~~lr---~~~~~~~~--~~~~pHITL~~~~~~~~~~~~~~~~l~~~~~~~~~f~l~l~~~~~F~~~~~vi~ 75 (153)
T PF13563_consen 1 PPDELAEEIEALR---RQKGDKRY--PRWPPHITLAFPFDIDDSLDELVEALARLAAGFPPFELRLDGFGSFPGKGRVIF 75 (153)
T ss_dssp ------------G---T-TTEEE----GGG-EEEEEEEEE--GGGHHHHHHHHHHHHHS--EEEEEEEEEEESSSSSSEE
T ss_pred Ccccccccchhhh---cccCCCCC--CCCCCEeEEEecCcccccHHHHHHHHHHHHccCCCeEEEEccEEEcCCCCCEEE
Confidence 5677777766665 13332222 45679999987432 378999999998889999999999999985456999
Q ss_pred EEecCChhHHHHHHHHHHHHHhcCCCCCCCC-CCCCeecceeecCCCCchhHHHHHHHHhhcCcCceEEEeEEEEEecC
Q 031049 85 LLIAQSLNLRELHDNLYEALATKGLQIDKEY-VPGVWFPHCMLAPSVPTDRVGNVCNILAKVKLPLQGDVEHVRLVQLP 162 (166)
Q Consensus 85 l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~-~~~~f~PHiTLar~~~~~~~~~~~~~l~~~~~p~~~~v~~i~L~~~~ 162 (166)
+.+.+++.|.+||++|.+.+...+. ..+. ++ |+||||||++........+++.+.....+.+|+|++|.|++++
T Consensus 76 l~~~~~~~L~~L~~~l~~~~~~~~~--~~~~~~~--~~PHiTia~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~L~~~~ 150 (153)
T PF13563_consen 76 LNVEPSPELEALHRALREALRPFGF--KQDSYRP--FRPHITIARRLSPKQAAEAIEKLQSEFPPISFTVDELALVRSD 150 (153)
T ss_dssp EEEEE-HHHHHHHHHHHHHHHHHHG--GGGGGS------EEEEEEESS-----------------EEEEE-EEEEEEEE
T ss_pred EEcCCCHHHHHHHHHHHHHHHHcCC--ccccCCC--cceEEEEeccCCcchhHHHHHHHhCcCCCcEEEEeEEEEEEEC
Confidence 9999999999999999999999862 2222 44 9999999998887777888888855567899999999999975
No 6
>PHA02574 57B hypothetical protein; Provisional
Probab=99.88 E-value=2.2e-22 Score=145.49 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=90.9
Q ss_pred CceEEEEecChhHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEeecCC-CCChhhhhcccCCCcCceeEEEeeeeecCC-
Q 031049 1 MQYAIKLYFDDALKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQP-CSKPEDILPDSIPLVDKFPISLSLFSVLPR- 78 (166)
Q Consensus 1 m~~~i~l~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~~~~-~~~~~~~l~~~~~~~~~f~l~l~~~g~F~~- 78 (166)
|=.|+++++|++++++|.++++++.. ++ ++ .++|+||||+|..+ ++.+.. +.++|+++++|+|.|++
T Consensus 9 ~RlF~Al~~~~~~r~~L~~lq~~l~~--~r-~V-~~enLHlTL~F~~~~v~~l~~-------~~~~F~l~l~glG~F~~~ 77 (149)
T PHA02574 9 QGTYVAAKFSEATLDALERLQRTLRI--PN-PV-PRDKLHSTIVYSRVYVPFIPA-------SGSTEVASSGHLEVWETQ 77 (149)
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhccC--Cc-cc-CHHHCEEEEecCHHHhHHHhc-------cCCCeEEEeccccccCCC
Confidence 34689999999999999999999643 22 33 67899999999433 433322 56999999999999985
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecCCCCch
Q 031049 79 KNNLLCLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAPSVPTD 133 (166)
Q Consensus 79 ~~~vl~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar~~~~~ 133 (166)
+++|+|++++ +++|.+|++++.+++...+ +++ |+|||||||+....
T Consensus 78 ~~rvlWlg~~-~~~L~~L~~~l~~~l~~~~------~r~--F~PHITLaR~~~~~ 123 (149)
T PHA02574 78 DKNALVLVLE-SEYLQCRHKYARALGATHD------FDD--YTPHITLSYDVGPL 123 (149)
T ss_pred CCCEEEEEeC-CHHHHHHHHHHHHHhhcCC------CCC--cCCcEEEeecCCCc
Confidence 6899999998 9999999999999988743 344 99999999954433
No 7
>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.
Probab=99.68 E-value=7.9e-16 Score=117.66 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=113.5
Q ss_pred CceEEEEec-ChhHHHHHHHHHHHHHHh--cC-CCCCCCCCCCeeEEeec--CC---CCChhhhhcccC-------CCcC
Q 031049 1 MQYAIKLYF-DDALKSKILDSMKLVREL--NI-PNLIKPEDEPHITLLVT--QP---CSKPEDILPDSI-------PLVD 64 (166)
Q Consensus 1 m~~~i~l~~-~~~~~~~i~~l~~~L~~~--~~-~~~~~~~~~~HiTL~~~--~~---~~~~~~~l~~~~-------~~~~ 64 (166)
.+|||++-+ .+++.+.+.++++.+... ++ .....++..+||||.++ .+ .+...++|+.+. ....
T Consensus 1 pthFl~ipl~~~~i~~~~~~fq~~v~~~~~~~~~~~~i~~~~lHlTL~vl~L~~~~~i~~a~~~L~~~~~~i~~~~~~~~ 80 (209)
T PF10469_consen 1 PTHFLCIPLNSPEIQEKFKEFQNEVLSKDPGLDESAFIPPEKLHLTLGVLSLDTDEEIEKAKEALKSLKQEIKDQLQNPP 80 (209)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhhcCCCCHHHcCCcccceEEEEEeeCCCHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 489999997 677899999999998864 34 22234778999999873 21 444445554442 1248
Q ss_pred ceeEEEeeeeecCC---CCcEEEEEecC---ChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecCCCC-----ch
Q 031049 65 KFPISLSLFSVLPR---KNNLLCLLIAQ---SLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAPSVP-----TD 133 (166)
Q Consensus 65 ~f~l~l~~~g~F~~---~~~vl~l~~~~---~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar~~~-----~~ 133 (166)
|+.++|.|+|+|++ .++|||+++.+ ...|.++.+.|.+.+...|+....+ +...|+||+||++... ..
T Consensus 81 ~~~i~l~Gl~~f~~d~~~~~VLya~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~-~~~~~~~H~Tl~n~~~~~~~~~~ 159 (209)
T PF10469_consen 81 PLKITLKGLGYFNDDPSKARVLYAKVSEDSNSERLQELANKLRERFQEAGLLVTDD-RRFSFKPHITLMNTSYRKKKKRR 159 (209)
T ss_pred CceEEeeechhhCCCCCcceEEEEcccccchHHHHHHHHHHHHHHHHHcCCccccc-cCCCcceEEEEEecccccccccc
Confidence 99999999999985 57899999985 3799999999999999999633222 2223899999996332 11
Q ss_pred -----hHHHHHHHHhhcCcCceEEEeEEEEEec
Q 031049 134 -----RVGNVCNILAKVKLPLQGDVEHVRLVQL 161 (166)
Q Consensus 134 -----~~~~~~~~l~~~~~p~~~~v~~i~L~~~ 161 (166)
...++++...+..+ ..+.|++|.|.+.
T Consensus 160 ~~~~~d~~~~~~~~~~~~f-G~~~v~~i~Lc~m 191 (209)
T PF10469_consen 160 QGNKFDASELLEKYKDFDF-GEQPVEEIQLCSM 191 (209)
T ss_pred ccCccccHHHHHHcCCCcc-ceEEECEEEEEeC
Confidence 23344444444322 3679999999988
No 8
>PLN00108 unknown protein; Provisional
Probab=99.33 E-value=4.1e-11 Score=93.48 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=107.6
Q ss_pred CceEEEEec--ChhHHHHHHHHHHHHHHh---------------cC-CCCCCCCCCCeeEEeec--CC---CCChhhhhc
Q 031049 1 MQYAIKLYF--DDALKSKILDSMKLVREL---------------NI-PNLIKPEDEPHITLLVT--QP---CSKPEDILP 57 (166)
Q Consensus 1 m~~~i~l~~--~~~~~~~i~~l~~~L~~~---------------~~-~~~~~~~~~~HiTL~~~--~~---~~~~~~~l~ 57 (166)
+||||++-+ .+++.+.+.++++.+-+. |+ ...-..+..+||||.++ .+ ++...+.|+
T Consensus 36 ~THFlavPL~~~p~i~~~~~~Fk~~Vl~~~~~~~~~f~~~l~~~gid~siF~~p~~LHLTLgmL~L~~~eev~kA~~~L~ 115 (257)
T PLN00108 36 FTHFVSLPLAIYPDLKKNIEAFQNSVLGNNDKDPLKFQSTLAEMGIEKSIFVSPKTFHLTVVMLKLENNESVVKAQNILK 115 (257)
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHhccccccccccccccccCCCHHHcCCCCceEEEEEEEEcCCHHHHHHHHHHHH
Confidence 589999999 599999999999987652 22 12223677999999763 21 333333333
Q ss_pred -------ccCCCcCceeEEEeeeeecCC---CCcEEEEEecCC---hhHHHHHHHHHHHHHhcCCCCCCCC-CCCCeecc
Q 031049 58 -------DSIPLVDKFPISLSLFSVLPR---KNNLLCLLIAQS---LNLRELHDNLYEALATKGLQIDKEY-VPGVWFPH 123 (166)
Q Consensus 58 -------~~~~~~~~f~l~l~~~g~F~~---~~~vl~l~~~~~---~~L~~L~~~l~~~l~~~g~~~~~~~-~~~~f~PH 123 (166)
++. .-.|+.|++.|+++|++ ..+|||+.++.. ..|..+.+.|.+.+...|. ...+. ++ ..+|
T Consensus 116 s~~~~i~~~l-~~~pl~I~lkGL~~Mnddps~~~VLYA~Ve~~~~~~rLq~~ad~i~~~F~~aGL-~~~d~~~~--vKLH 191 (257)
T PLN00108 116 SICSNVRQAL-KDRPVFIRLRGLDCMNGSLDKTRVLYAPVEEVGHEGRLLNACHVIIDAFENAGF-AGKDAKSR--LKLH 191 (257)
T ss_pred HHHHHHHHhh-CCCCeEEEEEeehhcCCCcccceEEEEeccccCchhHHHHHHHHHHHHHHHcCC-cccccCcc--eeeE
Confidence 332 35899999999999974 478999988743 5799999999999999996 33333 34 9999
Q ss_pred eeecCCC----Cc-----hhHHHHHHHHhhcCcCceEEEeEEEEEec
Q 031049 124 CMLAPSV----PT-----DRVGNVCNILAKVKLPLQGDVEHVRLVQL 161 (166)
Q Consensus 124 iTLar~~----~~-----~~~~~~~~~l~~~~~p~~~~v~~i~L~~~ 161 (166)
+||..-. .. -+..++++.+.+..+ .+..|++|.|-+-
T Consensus 192 ~TlmNt~~rk~k~~k~~sFDA~~Il~~f~d~~F-G~~~i~~vhls~r 237 (257)
T PLN00108 192 ATLMNASYRKDKSKKMDTFDAREIHKEFENKDW-GTYLIREAHISQR 237 (257)
T ss_pred eEEechhhhhcccCccccccHHHHHHhccCccc-ceEEecEEEEEee
Confidence 9999521 11 123345555554332 5778999887653
No 9
>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases. These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.
Probab=99.33 E-value=8.4e-13 Score=87.27 Aligned_cols=76 Identities=16% Similarity=0.304 Sum_probs=62.3
Q ss_pred EecChhHHHHHHHHHHHHHHh----cCCCCCCCCCCCeeEEeecCC-----CCChhhhhcccCCCcCceeEEEeeeeecC
Q 031049 7 LYFDDALKSKILDSMKLVREL----NIPNLIKPEDEPHITLLVTQP-----CSKPEDILPDSIPLVDKFPISLSLFSVLP 77 (166)
Q Consensus 7 l~~~~~~~~~i~~l~~~L~~~----~~~~~~~~~~~~HiTL~~~~~-----~~~~~~~l~~~~~~~~~f~l~l~~~g~F~ 77 (166)
+.+|++++++|.++++.|++. |+ .+. .+.++||||+|.++ .+.+.+++.+++....||+++++++|.|+
T Consensus 1 i~~p~~~~~~L~~l~~~l~~~~~~~~~-r~~-~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~~~f~~~~~~~~~f~ 78 (87)
T PF02834_consen 1 IDLPEEIKEQLNQLQERLRQALPPLGI-RWV-RPFNPHITLAFLGEVPPDQLPELIEALANIASRFPPFTLTVDGFGLFP 78 (87)
T ss_dssp EE-THHHHHHHHHHHHHHHHHCCSCTE-EEG-SCGGSEEEEEEEEEESHHHHHHHHHHHHHHHCCCB-EEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhhccccCC-ccc-CCCCCeEEEEeCCCCCHHHHHHHHHHHHhhhccCCCeEEEEeEEEEeC
Confidence 467999999999999999953 32 233 78899999999653 67788889988888999999999999998
Q ss_pred C--CCcEEE
Q 031049 78 R--KNNLLC 84 (166)
Q Consensus 78 ~--~~~vl~ 84 (166)
+ +++|+|
T Consensus 79 s~~~~rvi~ 87 (87)
T PF02834_consen 79 SRLRPRVIW 87 (87)
T ss_dssp EEETCEEEE
T ss_pred CCCCCCCcC
Confidence 5 689998
No 10
>PF07823 CPDase: Cyclic phosphodiesterase-like protein; InterPro: IPR012386 2',3' Cyclic nucleotide phosphodiesterases (CPDases) are enzymes that catalyse at least two distinct steps in the splicing of tRNA introns in eukaryotes. The active site is characterised by two conserved histidine residues []. The enzyme has six cysteine residues, four of which are involved in forming two intra-molecular disulphide bridges. One of these bridges is involved in the catalytic activity of the enzyme as it opens when CPDase is semi-reduced []. Proteins in this entryand belong to 3.1.4.37 from EC and catalyse the reaction Nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate. ; GO: 0004112 cyclic-nucleotide phosphodiesterase activity; PDB: 1JH7_A 1JH6_B 1FSI_B.
Probab=99.25 E-value=4.5e-11 Score=90.69 Aligned_cols=162 Identities=15% Similarity=0.170 Sum_probs=89.3
Q ss_pred CceEEEEecCh--hHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEeec--CC-CCChhhhhcccCCCcCce-----eEEE
Q 031049 1 MQYAIKLYFDD--ALKSKILDSMKLVRELNIPNLIKPEDEPHITLLVT--QP-CSKPEDILPDSIPLVDKF-----PISL 70 (166)
Q Consensus 1 m~~~i~l~~~~--~~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~~--~~-~~~~~~~l~~~~~~~~~f-----~l~l 70 (166)
|+|+|=+.|+. ...+.+..+...|+....... +.=.|||||... .+ .+++.+.|+..+....++ .++|
T Consensus 1 M~~SlWl~P~~~~~~~~~L~~lI~~L~~~~~~~~--p~F~PHiTL~s~i~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~ 78 (196)
T PF07823_consen 1 MPYSLWLVPPPGSPLYERLKTLISSLASLFPGSP--PPFEPHITLTSGISLDSSDDVQKVLDSAAAALKPLPKNHFTVRF 78 (196)
T ss_dssp --EEEEEEE-T--TTHHHHHHHHHHHHHHST-----------EEEEEEEEE--HHHHHHHHHHHHHH-B-E-----EEEE
T ss_pred CeEEEEEcCCCCccHHHHHHHHHHHHHHHCCCCC--CCcCCeEEEeCCCccCCHHHHHHHHHHHHHhccCcccceeEEEe
Confidence 99999999999 999999999999997532111 334799999753 22 566677777766677888 9999
Q ss_pred eeeeecCCCCcEEEEEecCChhHHHHHHHHHHHHHhcCCCCC--CCCCCCCeecceeecCC-CCchhH---HHHHHHHhh
Q 031049 71 SLFSVLPRKNNLLCLLIAQSLNLRELHDNLYEALATKGLQID--KEYVPGVWFPHCMLAPS-VPTDRV---GNVCNILAK 144 (166)
Q Consensus 71 ~~~g~F~~~~~vl~l~~~~~~~L~~L~~~l~~~l~~~g~~~~--~~~~~~~f~PHiTLar~-~~~~~~---~~~~~~l~~ 144 (166)
+++..=...-+-+|+.+..+++|..|++.+++.+........ .......|.||++|... ....+. ......+.+
T Consensus 79 ~~v~~g~~yfq~vyl~v~~t~~L~~l~~~~r~~~~~~~~~~~~~~~~~~~~y~PHlSLlY~d~~~~e~~~~~~~~~~i~~ 158 (196)
T PF07823_consen 79 DKVASGDKYFQCVYLEVEKTPELMSLAQIARELFVEGPPDEVKAAEWPREPYMPHLSLLYGDLPPEEKAEAAEIAQRIDD 158 (196)
T ss_dssp EEEEEEEETTEEEEEEE---HHHHHHHCHHHHCT----------T----S----EEEEE-----HHHHHHHHHHHHHH-T
T ss_pred eeEeeCCeEEEEEEEEecCChhHHHHHHHHHHHhhhccccccccccccCCCCCCeEEEEEcCCCcccHHHHHHHHHHhcc
Confidence 998753223478999999999999999999988744210000 01111249999999984 332222 222223333
Q ss_pred c------CcCceEEEeEEEEEecCCC
Q 031049 145 V------KLPLQGDVEHVRLVQLPPN 164 (166)
Q Consensus 145 ~------~~p~~~~v~~i~L~~~~p~ 164 (166)
. .....|.+.++.|++..-.
T Consensus 159 ~l~~~~~~~~~~~~~~~l~lv~t~g~ 184 (196)
T PF07823_consen 159 ALGVDSGISGLGWEGGELKLVRTDGP 184 (196)
T ss_dssp T------GTT-EEEEEEEEEEE--TT
T ss_pred cccccccCCCCCEeccEEEEEEcCCC
Confidence 2 2235889999999987643
No 11
>PF05213 Corona_NS2A: Coronavirus NS2A protein; InterPro: IPR007878 This entry is represented by Coronavirus non-structural protein 2A (32kDa); it is a family of uncharacterised viral proteins. Members have a phosphoesterase module (2H) [] and are predicted to be involved in RNA modification. The viral group of 2H phosphoesterases contains proteins from two unrelated virus types: the type C rotaviruses (VP3 protein, IPR011181 from INTERPRO) that are double stranded multipartite RNA viruses and the coronaviruses (NS2 protein, this group) that are positive strand RNA viruses. Given that these viruses have vertebrate hosts, it is likely that the 2H phosphoesterase domain was derived from the host by one of virus groups followed by rapid sequence divergence []. Subsequently, it may have been exchanged between the viral families. Although the direction of the exchange is not clear, it is possible that a double stranded replicative form of a subgenomic RNA transcript of the coronavirus NS2 was stabilised by a rotavirus and incorporated into its multiple double stranded RNA genome []. These proteins can be utilised as novel drug targets because of their predicted RNA modification role.
Probab=98.76 E-value=6.8e-08 Score=72.94 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=78.5
Q ss_pred ceEEEEecC--hhHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEeec--C-C-CCChhhhhcccCCC--cCceeEEEeee
Q 031049 2 QYAIKLYFD--DALKSKILDSMKLVRELNIPNLIKPEDEPHITLLVT--Q-P-CSKPEDILPDSIPL--VDKFPISLSLF 73 (166)
Q Consensus 2 ~~~i~l~~~--~~~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~~--~-~-~~~~~~~l~~~~~~--~~~f~l~l~~~ 73 (166)
+|||.+.+- +..-....++|.+|-+.|++.. ....|||||.++ . + ...+..+++++... ....+++++..
T Consensus 7 ~HFin~Pl~~f~~f~~~~~~LQ~~~~~eG~d~k--~QkaPHlSl~mL~Isd~~i~~V~~~iq~ViddM~~~~~~it~tnp 84 (248)
T PF05213_consen 7 THFINFPLVQFEGFMLNFKDLQFQLLEEGVDCK--LQKAPHLSLGMLDISDEDIPDVETAIQKVIDDMVWFEGDITFTNP 84 (248)
T ss_pred CceeeccchhhhhHHHHHHHHHHHHHHcCCCcc--ccccCeeEEEEEEcChhhhhhHHHHHHHHHHHhhcccceEEecCc
Confidence 456666443 2455677789999999998653 334899999864 2 2 66666444444322 34458888876
Q ss_pred eecCCCCcEEEEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecC
Q 031049 74 SVLPRKNNLLCLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAP 128 (166)
Q Consensus 74 g~F~~~~~vl~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar 128 (166)
-..+ +...+ ..+++.+||..|...++..|..+. ..|. |.||||||.
T Consensus 85 ~MLg---~~yV~---nV~Gv~slh~ki~n~~~~kgit~g-QSRm--wIPHiTia~ 130 (248)
T PF05213_consen 85 HMLG---RCYVA---NVKGVLSLHDKIVNVFRKKGITFG-QSRM--WIPHITIAQ 130 (248)
T ss_pred eeec---cEEEE---ecccHHHHHHHHHHHHHHhCcCcC-cccc--cccceehhh
Confidence 6654 33334 356899999999999999985332 2355 999999996
No 12
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=98.63 E-value=9.9e-07 Score=68.89 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=86.2
Q ss_pred EEEecChhHHHHHHHHHHHHHHhcCCCC----------CCCCCCCeeEEe--e-cCC--CCChhhhhcccC--CCcCcee
Q 031049 5 IKLYFDDALKSKILDSMKLVRELNIPNL----------IKPEDEPHITLL--V-TQP--CSKPEDILPDSI--PLVDKFP 67 (166)
Q Consensus 5 i~l~~~~~~~~~i~~l~~~L~~~~~~~~----------~~~~~~~HiTL~--~-~~~--~~~~~~~l~~~~--~~~~~f~ 67 (166)
|.+.++++..+.+.++.+.+........ .....++||+|. + +.. .+...+.|++.. +...+|.
T Consensus 46 i~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~s~lg~~~~lHISLSr~~~lr~~~id~f~~~lr~~l~~~~~~~F~ 125 (239)
T PF09749_consen 46 IEWPPSEDQRELLEKLISKANSICPKLHSEFEPLLYSDLGSPDPLHISLSRTFPLRTHQIDPFVDSLRQALRSSNIRPFY 125 (239)
T ss_pred EEecCcHHHHHHHHHHHHHHHhhhhhhhhhcccccccccCCCCCeEEEeCCCccccHHHHHHHHHHHHHHHhhcCCceEE
Confidence 6777888888888888888776532110 013568999995 2 222 555555555555 6889999
Q ss_pred EEEeeeeecCC-CCcEEEEEe--cC-Ch-hHHHHHHHHHHHHHhcCCCCCCCC-CCCCeecceeecCC
Q 031049 68 ISLSLFSVLPR-KNNLLCLLI--AQ-SL-NLRELHDNLYEALATKGLQIDKEY-VPGVWFPHCMLAPS 129 (166)
Q Consensus 68 l~l~~~g~F~~-~~~vl~l~~--~~-~~-~L~~L~~~l~~~l~~~g~~~~~~~-~~~~f~PHiTLar~ 129 (166)
+.++++.+|.+ .....|++. .. .. .|..|.+.+.+.+...| .+.+| .. -.|||+||-.
T Consensus 126 v~f~~~~~~~N~e~TR~FL~l~V~~~~~~~l~~l~~~i~~~l~~~~--lp~~Y~~~--~~fHvSIAw~ 189 (239)
T PF09749_consen 126 VSFSGLDVYTNDEKTRSFLALRVSEGSNNELKRLLDRINEVLKEFG--LPPFYDED--PSFHVSIAWT 189 (239)
T ss_pred EEeCceEEEecCCCCeEEEEEEecccccHHHHHHHHHHHHHHHHhC--CCcccCCC--CCCEEEEEEE
Confidence 99999999997 333344443 32 23 39999999999999988 67777 65 7899999963
No 13
>TIGR03223 Phn_opern_protn putative phosphonate metabolism protein. This family of proteins is observed in the vicinity of other caharacterized genes involved in the catabolism of phosphonates via the3 C-P lyase system (GenProp0232), its function is unknown. These proteins are members of the somewhat broader pfam06299 model "Protein of unknown function (DUF1045)" which contains proteins found in a different genomic context as well.
Probab=98.36 E-value=2.6e-06 Score=65.71 Aligned_cols=119 Identities=14% Similarity=0.003 Sum_probs=83.0
Q ss_pred CCCCeeEEee---c--CC-CCChhhhhcccCCCcCceeEE---EeeeeecCCCCcEEEEEecCChhHHHHHHHHHHHHHh
Q 031049 36 EDEPHITLLV---T--QP-CSKPEDILPDSIPLVDKFPIS---LSLFSVLPRKNNLLCLLIAQSLNLRELHDNLYEALAT 106 (166)
Q Consensus 36 ~~~~HiTL~~---~--~~-~~~~~~~l~~~~~~~~~f~l~---l~~~g~F~~~~~vl~l~~~~~~~L~~L~~~l~~~l~~ 106 (166)
+-..|+||+- + +. ..++.++++++|+...||++. +..+|-| +-+....++++|..|+.++.+.|..
T Consensus 55 rYGfHaTLKaPFrLa~g~~~a~L~~al~~fA~~~~pf~i~~L~l~~Lg~F-----lAL~P~~~~~~L~~LAa~~V~~~d~ 129 (228)
T TIGR03223 55 RYGFHATLKAPFRLAPGVTEAELLAAVAAFAATRAPFALPPLRVALLGGF-----LALRPAAPCPALQALAAACVRELDP 129 (228)
T ss_pred hcccceeecCCcccCCCCCHHHHHHHHHHHHhcCCCccCCcceeeeeCCE-----EEEeeCCCCHHHHHHHHHHHHhhhh
Confidence 4479999984 2 22 788999999999999999875 3334333 1122235779999999999888855
Q ss_pred cCC--------------------------CCCCCCCCCCeecceeecCCCCchhHHHHHHHHhhcC---cCceEEEeEEE
Q 031049 107 KGL--------------------------QIDKEYVPGVWFPHCMLAPSVPTDRVGNVCNILAKVK---LPLQGDVEHVR 157 (166)
Q Consensus 107 ~g~--------------------------~~~~~~~~~~f~PHiTLar~~~~~~~~~~~~~l~~~~---~p~~~~v~~i~ 157 (166)
+-. +++.-. +.|.-||||.-+++......+...+.... .+-.+.|++|+
T Consensus 130 fRAPls~aelaRRr~~~Ls~~Q~~~L~~WGYPYV~--deFrFHmTLTg~l~~~~~~~~~~~l~~~~~~~l~~p~~id~la 207 (228)
T TIGR03223 130 FRAPLTEAELARRRPDQLTPRQRALLERWGYPYVL--EEFRFHMTLTGRLDEEERAAVLARLEARFAPLLADPLAVDGLA 207 (228)
T ss_pred ccCCCCHHHHhhcCccCCCHHHHHHHHHcCCCcee--cceEEEEEecCCCChHHHHHHHHHHHHHhhhccCCCeeeeeEE
Confidence 321 023222 34999999998888777766666666543 33477899999
Q ss_pred EEec
Q 031049 158 LVQL 161 (166)
Q Consensus 158 L~~~ 161 (166)
|+.-
T Consensus 208 Lf~e 211 (228)
T TIGR03223 208 LFVE 211 (228)
T ss_pred EEec
Confidence 9863
No 14
>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases. These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.
Probab=98.34 E-value=2.8e-07 Score=60.63 Aligned_cols=68 Identities=29% Similarity=0.395 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecC--CCCchhHHHHHHHHhhc---CcCceEEEeEEEEEecC
Q 031049 90 SLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAP--SVPTDRVGNVCNILAKV---KLPLQGDVEHVRLVQLP 162 (166)
Q Consensus 90 ~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar--~~~~~~~~~~~~~l~~~---~~p~~~~v~~i~L~~~~ 162 (166)
.+.|.++++.+.+.+...| +... ++ +.|||||++ ..+.+.+.++.+.+... ..|++++++++++|.|.
T Consensus 8 ~~~L~~l~~~l~~~~~~~~--~r~~-~~--~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~~~f~~~~~~~~~f~s~ 80 (87)
T PF02834_consen 8 KEQLNQLQERLRQALPPLG--IRWV-RP--FNPHITLAFLGEVPPDQLPELIEALANIASRFPPFTLTVDGFGLFPSR 80 (87)
T ss_dssp HHHHHHHHHHHHHHCCSCT--EEEG-SC--GGSEEEEEEEEEESHHHHHHHHHHHHHHHCCCB-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhhccccC--Cccc-CC--CCCeEEEEeCCCCCHHHHHHHHHHHHhhhccCCCeEEEEeEEEEeCCC
Confidence 3678888888888776766 3333 55 999999997 44456677776666643 35789999999999883
No 15
>PHA02977 hypothetical protein; Provisional
Probab=97.57 E-value=0.00074 Score=48.49 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCCCCCCCCCeeEEeecC-C----CCChhhhhcccCCCcCceeEEEeeeeecCC---------CCcEEEEEecCChhHHH
Q 031049 30 PNLIKPEDEPHITLLVTQ-P----CSKPEDILPDSIPLVDKFPISLSLFSVLPR---------KNNLLCLLIAQSLNLRE 95 (166)
Q Consensus 30 ~~~~~~~~~~HiTL~~~~-~----~~~~~~~l~~~~~~~~~f~l~l~~~g~F~~---------~~~vl~l~~~~~~~L~~ 95 (166)
+.+....-.|||||.... | .+...+...++ ....++++-...-.||. ..+-+.+..+.+++|..
T Consensus 61 kymtgcdi~phitlgian~dq~~~f~~fk~~~~d~--dl~sis~~cke~icfpqs~askelga~g~avvmkle~sddlka 138 (201)
T PHA02977 61 KYMTGCDIFPHITLGIANKDQCDNFENFKELIKDI--DLQSISFTCKEEICFPQSNASKELGAKGCAVVMKLEASDDLKA 138 (201)
T ss_pred hhhccCCCCcceeeeccCccHhHHHHHHHHHhhcc--cceeEEEEeeeeEeccccchhhhhCcCccEEEEEEEechHHHH
Confidence 344445568999998753 2 44455555555 67888999999999983 23466777888999999
Q ss_pred HHHHHHHHHHh----cCCCCCCCCCCCCeecceeecCC-CC-chhHHHHHHHHhh
Q 031049 96 LHDNLYEALAT----KGLQIDKEYVPGVWFPHCMLAPS-VP-TDRVGNVCNILAK 144 (166)
Q Consensus 96 L~~~l~~~l~~----~g~~~~~~~~~~~f~PHiTLar~-~~-~~~~~~~~~~l~~ 144 (166)
|..-|-.+... +|. +- ... .|-||+|+|.- .+ .+.-.+.++....
T Consensus 139 lrnvl~n~vp~pkdifg~-i~-~d~--~w~phitigyv~~dd~dnk~r~ie~~~~ 189 (201)
T PHA02977 139 LRNVLFNAVPCPKDIFGD-IL-SDN--PWCPHITIGYVKADDEDNKKRFIECAEA 189 (201)
T ss_pred HHHHhhcccCCcHHhhcc-cc-cCC--CCCCceEEEeecccchhhHHHHHHHHHH
Confidence 98887665422 121 11 112 49999999962 22 2344455554443
No 16
>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=97.48 E-value=0.001 Score=48.75 Aligned_cols=105 Identities=16% Similarity=0.100 Sum_probs=74.2
Q ss_pred CCChhhhhcccCCCcCceeEE---EeeeeecCCCCcEEEEEec-CChhHHHHHHHHHHHHHhcCC---------------
Q 031049 49 CSKPEDILPDSIPLVDKFPIS---LSLFSVLPRKNNLLCLLIA-QSLNLRELHDNLYEALATKGL--------------- 109 (166)
Q Consensus 49 ~~~~~~~l~~~~~~~~~f~l~---l~~~g~F~~~~~vl~l~~~-~~~~L~~L~~~l~~~l~~~g~--------------- 109 (166)
..++.++++.+|+...||.+. +..+|.| +-+-+. +++.|..|+..+.+.|..+-.
T Consensus 14 ~~~L~~a~~~~a~~~~pf~l~~L~v~~lg~F------lALvp~~~~~~L~~LAa~cV~~~d~fRAPls~aelaRR~~~~L 87 (160)
T PF06299_consen 14 EADLLAALAAFAARFAPFELPGLEVARLGGF------LALVPAGPCPALQALAAACVRAFDPFRAPLSEAELARRRPAGL 87 (160)
T ss_pred HHHHHHHHHHHhccCCCccCCceeEeeECCE------EEEeeCCCCHHHHHHHHHHHHhhhhccCCCChHHHhhcCcccC
Confidence 677999999999999999755 4554443 334444 568999999998877766421
Q ss_pred -----------CCCCCCCCCCeecceeecCCCCchhHHHHHHHHhhcC---cCceEEEeEEEEEec
Q 031049 110 -----------QIDKEYVPGVWFPHCMLAPSVPTDRVGNVCNILAKVK---LPLQGDVEHVRLVQL 161 (166)
Q Consensus 110 -----------~~~~~~~~~~f~PHiTLar~~~~~~~~~~~~~l~~~~---~p~~~~v~~i~L~~~ 161 (166)
+++ |--+.|..||||.-+++......+...++... .+-...|++|+|+.-
T Consensus 88 s~~Q~~~L~rWGYP--YV~deFRFHmTLTg~l~~~~~~~~~~~l~~~f~~~l~~p~~id~laLf~e 151 (160)
T PF06299_consen 88 SPRQRANLERWGYP--YVMDEFRFHMTLTGRLDPAERARVEAALEAHFAPLLPEPLRIDSLALFGE 151 (160)
T ss_pred CHHHHHHHHHhCCC--ceeCcCEeeEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCeeecceEEEec
Confidence 122 22235999999998888777777766666543 234678999999864
No 17
>PF08302 tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase domain; InterPro: IPR015965 This entry represents a phosphodiesterase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.65 E-value=0.28 Score=38.82 Aligned_cols=65 Identities=8% Similarity=0.114 Sum_probs=36.9
Q ss_pred cCceeEEEeeeeecCCCCcEEEEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecC---CCCchhHHHHH
Q 031049 63 VDKFPISLSLFSVLPRKNNLLCLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAP---SVPTDRVGNVC 139 (166)
Q Consensus 63 ~~~f~l~l~~~g~F~~~~~vl~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar---~~~~~~~~~~~ 139 (166)
...+++++..+- |-. +++.+.+.-...-..-.. ..+ ....+..||||+|. .+++.+-..++
T Consensus 160 ~~~~~v~L~rlv-wd~--rimai~V~~~~~~~~~~~-------~~~------~~c~N~~~HITVGT~~~~VkP~eSN~Ll 223 (257)
T PF08302_consen 160 LGSCDVRLERLV-WDD--RIMAIVVRIVPPEDEEDE-------VPE------WECTNKIPHITVGTRDPGVKPKESNDLL 223 (257)
T ss_pred cceEEEEEEEEE-ECC--cEEEEEEEccCccccccc-------cCC------cccCCCCCEEEEEcCCCCCCcchHHHHH
Confidence 356899999997 765 898888763211000000 111 12234799999994 34455555555
Q ss_pred HHHh
Q 031049 140 NILA 143 (166)
Q Consensus 140 ~~l~ 143 (166)
+.+.
T Consensus 224 ~~~~ 227 (257)
T PF08302_consen 224 ERWL 227 (257)
T ss_pred HHHH
Confidence 5444
No 18
>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription]
Probab=94.05 E-value=0.23 Score=40.37 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=58.7
Q ss_pred CCCCCCeeEEeec---CC--CCChhhhhccc------CCCcCceeEEEeeeeecCC---CCcEEEEEecCCh---hHHHH
Q 031049 34 KPEDEPHITLLVT---QP--CSKPEDILPDS------IPLVDKFPISLSLFSVLPR---KNNLLCLLIAQSL---NLREL 96 (166)
Q Consensus 34 ~~~~~~HiTL~~~---~~--~~~~~~~l~~~------~~~~~~f~l~l~~~g~F~~---~~~vl~l~~~~~~---~L~~L 96 (166)
..+...|+|+.+. .+ +.+..+.|+.. .-.-.|+.+.+.|+..++. ..+|+|+.+++.. .|...
T Consensus 173 ~~p~~~HLTvgm~~L~~dd~vq~a~e~les~~~e~~~~~~~kp~~i~lkG~~~mnddP~~~kVLYAkv~~~~~e~~l~~~ 252 (345)
T KOG2814|consen 173 QGPGTFHLTVGMLKLLNDDDVQKALEILESTFQEIRIDVGEKPLFIDLKGLDKMNDDPSLTKVLYAKVEPDDYEKFLQHR 252 (345)
T ss_pred cCCceeeEEEEEEEecChHHHHHHHHHHHHHHHHHHhccCCCceeeeccchhhhcCCHhHheeeeeeccCcchHHHHHHH
Confidence 3677999999863 22 44444444331 1256899999999999985 3679999998643 34333
Q ss_pred H-HHHHHHHHhcCCCCCCCCCCCCeecceeec
Q 031049 97 H-DNLYEALATKGLQIDKEYVPGVWFPHCMLA 127 (166)
Q Consensus 97 ~-~~l~~~l~~~g~~~~~~~~~~~f~PHiTLa 127 (166)
- +.+-.++..+|. +..+.++ -.=|||+.
T Consensus 253 ~~~~i~~~f~~~~l-i~k~~~~--~kLH~Tvm 281 (345)
T KOG2814|consen 253 CGERILERFVASGL-IKKESSS--LKLHCTVM 281 (345)
T ss_pred HHHHHHHHHHHhcc-hhccccc--cEEEEEEe
Confidence 3 555666666663 3333333 67799998
No 19
>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A.
Probab=93.95 E-value=0.26 Score=34.91 Aligned_cols=74 Identities=8% Similarity=0.055 Sum_probs=29.6
Q ss_pred EEEEecChhHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEeecCCCCChhhhhcccCCCcCceeEEEeeeeecC
Q 031049 4 AIKLYFDDALKSKILDSMKLVRELNIPNLIKPEDEPHITLLVTQPCSKPEDILPDSIPLVDKFPISLSLFSVLP 77 (166)
Q Consensus 4 ~i~l~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~~~~~~~~~~~l~~~~~~~~~f~l~l~~~g~F~ 77 (166)
++.+..++++.+--.++.+.+...+...-......|||||.-........+.++.+.....+.+.+++++..+.
T Consensus 75 ~l~~~~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~PHiTia~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~L~~ 148 (153)
T PF13563_consen 75 FLNVEPSPELEALHRALREALRPFGFKQDSYRPFRPHITIARRLSPKQAAEAIEKLQSEFPPISFTVDELALVR 148 (153)
T ss_dssp EEEEEE-HHHHHHHHHHHHHHHHHHGGGGGGS----EEEEEEESS-----------------EEEEE-EEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHcCCccccCCCcceEEEEeccCCcchhHHHHHHHhCcCCCcEEEEeEEEEEE
Confidence 34444455555555555555555443111014568999998754322223333333345678899999988764
No 20
>PRK13679 hypothetical protein; Provisional
Probab=93.89 E-value=0.25 Score=36.28 Aligned_cols=69 Identities=13% Similarity=0.260 Sum_probs=43.2
Q ss_pred EEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecC--CCCchhHHHHHHHHhhc---CcCceEEEeEEEE
Q 031049 84 CLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAP--SVPTDRVGNVCNILAKV---KLPLQGDVEHVRL 158 (166)
Q Consensus 84 ~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar--~~~~~~~~~~~~~l~~~---~~p~~~~v~~i~L 158 (166)
++++.+++++.+.-+++.+.+.. .++. +-|||||.- .++.+++.++.+.++.. ..|++.++++++-
T Consensus 4 ~iai~~p~~~~~~l~~~~~~~~~-------~~~~--v~pHITL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~l~~~~~ 74 (168)
T PRK13679 4 GIVLFPSKKIQDFANSYRKRYDP-------HYAL--IPPHITLKEPFEISDEQLDSIVEELRAIASETKPFTLHVTKVSS 74 (168)
T ss_pred EEEEcCCHHHHHHHHHHHHhhCc-------cccc--CCCceEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 45666677777777777665532 1233 788999984 45555555555544432 3577888888876
Q ss_pred Eec
Q 031049 159 VQL 161 (166)
Q Consensus 159 ~~~ 161 (166)
+..
T Consensus 75 F~~ 77 (168)
T PRK13679 75 FAP 77 (168)
T ss_pred CCC
Confidence 643
No 21
>TIGR02258 2_5_ligase 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.
Probab=93.65 E-value=0.6 Score=34.30 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=43.9
Q ss_pred EEEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeec----ceeec--CCCCchhHHHHHHHHhhcC-cCceEEEeE
Q 031049 83 LCLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFP----HCMLA--PSVPTDRVGNVCNILAKVK-LPLQGDVEH 155 (166)
Q Consensus 83 l~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~P----HiTLa--r~~~~~~~~~~~~~l~~~~-~p~~~~v~~ 155 (166)
+|+++..++++.+.-.++.+.+.... .. .+|.| ||||+ -..+.+++..+.+.+.... .++++.+++
T Consensus 3 ~FiAl~~p~~~~~~l~~~~~~l~~~~----~~---~r~~~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~f~l~l~~ 75 (179)
T TIGR02258 3 LFIAIDLPPEIREQLSRIQRKLKSPL----DG---IKWVPPENLHITLKFLGEVDEEQVEELEDALAKIAEPPFTLKLEG 75 (179)
T ss_pred EEEEecCCHHHHHHHHHHHHHhhccC----CC---cEECChHHCEEEEEEccCCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 57777777666655555555554211 11 23665 99998 2455566666655554432 357888999
Q ss_pred EEEEec
Q 031049 156 VRLVQL 161 (166)
Q Consensus 156 i~L~~~ 161 (166)
+..+..
T Consensus 76 ~~~F~~ 81 (179)
T TIGR02258 76 IGVFGN 81 (179)
T ss_pred eeeCCC
Confidence 988864
No 22
>PF07823 CPDase: Cyclic phosphodiesterase-like protein; InterPro: IPR012386 2',3' Cyclic nucleotide phosphodiesterases (CPDases) are enzymes that catalyse at least two distinct steps in the splicing of tRNA introns in eukaryotes. The active site is characterised by two conserved histidine residues []. The enzyme has six cysteine residues, four of which are involved in forming two intra-molecular disulphide bridges. One of these bridges is involved in the catalytic activity of the enzyme as it opens when CPDase is semi-reduced []. Proteins in this entryand belong to 3.1.4.37 from EC and catalyse the reaction Nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate. ; GO: 0004112 cyclic-nucleotide phosphodiesterase activity; PDB: 1JH7_A 1JH6_B 1FSI_B.
Probab=93.22 E-value=0.25 Score=37.41 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=30.8
Q ss_pred EEEEEecCC-hhHHHHHHHHHHHHHh-cCCCCCCCCCCCCeecceeecCCCC---chhHHHHHHHHhhcCcCc-----eE
Q 031049 82 LLCLLIAQS-LNLRELHDNLYEALAT-KGLQIDKEYVPGVWFPHCMLAPSVP---TDRVGNVCNILAKVKLPL-----QG 151 (166)
Q Consensus 82 vl~l~~~~~-~~L~~L~~~l~~~l~~-~g~~~~~~~~~~~f~PHiTLar~~~---~~~~~~~~~~l~~~~~p~-----~~ 151 (166)
-||+-|.++ +.-..|+..| ..+.. .+ . .+..|.|||||.-.+. .+++.+.+........++ ..
T Consensus 4 SlWl~P~~~~~~~~~L~~lI-~~L~~~~~--~----~~p~F~PHiTL~s~i~~~~~~~~~~~L~~~~~~~~~~~~~~~~v 76 (196)
T PF07823_consen 4 SLWLVPPPGSPLYERLKTLI-SSLASLFP--G----SPPPFEPHITLTSGISLDSSDDVQKVLDSAAAALKPLPKNHFTV 76 (196)
T ss_dssp EEEEEE-T--TTHHHHHHHH-HHHHHHST---------------EEEEEEEEE--HHHHHHHHHHHHHH-B-E-----EE
T ss_pred EEEEcCCCCccHHHHHHHHH-HHHHHHCC--C----CCCCcCCeEEEeCCCccCCHHHHHHHHHHHHHhccCcccceeEE
Confidence 489888753 4455566555 44443 32 1 1234999999996443 344555554433323344 55
Q ss_pred EEeEEE
Q 031049 152 DVEHVR 157 (166)
Q Consensus 152 ~v~~i~ 157 (166)
+++++.
T Consensus 77 ~~~~v~ 82 (196)
T PF07823_consen 77 RFDKVA 82 (196)
T ss_dssp EEEEEE
T ss_pred EeeeEe
Confidence 565554
No 23
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=93.04 E-value=0.62 Score=34.85 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=52.9
Q ss_pred EEEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecC--CCCchhHHHHHHHHhhcCc--CceEEEeEEEE
Q 031049 83 LCLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAP--SVPTDRVGNVCNILAKVKL--PLQGDVEHVRL 158 (166)
Q Consensus 83 l~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar--~~~~~~~~~~~~~l~~~~~--p~~~~v~~i~L 158 (166)
+|+++..++++.+.-.++.+.+...+ . ..-+.+ =.+||||.- +++.....++.+.++.... +++.++++++.
T Consensus 3 lFiAl~~p~~i~~~i~~~~~~~~~~~-~-~k~v~~--en~HiTL~flGev~e~~~~~l~~~l~~i~~~~~f~i~l~g~g~ 78 (180)
T COG1514 3 LFIALDPPAEIAERLARIRARLKGAR-A-IKWVEP--ENLHITLKFLGEVDEDKADELIEALARIAAPEPFPITLDGAGS 78 (180)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCccc-c-cccccc--cCceEEEEccCCcCchHHHHHHHHHHHhhcCCceEEEEeeEcc
Confidence 57788888888777777777666654 1 122334 578999983 6677777777777766543 78889999998
Q ss_pred Eec
Q 031049 159 VQL 161 (166)
Q Consensus 159 ~~~ 161 (166)
+-.
T Consensus 79 F~~ 81 (180)
T COG1514 79 FPN 81 (180)
T ss_pred cCC
Confidence 875
No 24
>PRK15124 2'-5' RNA ligase; Provisional
Probab=89.24 E-value=2.3 Score=31.41 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=42.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeec--CCCCchhHHHHHHHHhhc-CcCceEEEeEEE
Q 031049 81 NLLCLLIAQSLNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLA--PSVPTDRVGNVCNILAKV-KLPLQGDVEHVR 157 (166)
Q Consensus 81 ~vl~l~~~~~~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLa--r~~~~~~~~~~~~~l~~~-~~p~~~~v~~i~ 157 (166)
-.+|+++..++++.+--.++.+.+.... ......+++| ||||. -.++.+.+..+...+... ..|++..++++.
T Consensus 5 ~RlFiAl~~p~~~~~~l~~~~~~~~~~~--~~rwv~~~nl--HiTL~FlG~v~~~~~~~l~~~l~~~~~~pF~l~l~~~g 80 (176)
T PRK15124 5 KRLFFAIDLPDEIRQQIIHWRATHFPPE--AGRPVAAANL--HLTLAFLGEVSAEKQQALSQLAGRIRQPGFTLTLDDAG 80 (176)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHhcccc--Cccccccccc--EEEEEecCCCCHHHHHHHHHHHHhcccCCeEEEECccc
Confidence 3578887766555443333333332211 0111122223 99998 356667766666666543 257888888888
Q ss_pred EEe
Q 031049 158 LVQ 160 (166)
Q Consensus 158 L~~ 160 (166)
.+-
T Consensus 81 ~Fp 83 (176)
T PRK15124 81 QWP 83 (176)
T ss_pred CcC
Confidence 774
No 25
>KOG3102 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.03 E-value=1.3 Score=34.01 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=61.2
Q ss_pred CCCCeeEEe---ecC--CCCChhhhhcccCCCcCceeEEEeeeeecCC--CCcEEEEEec-CC---hhHHHHHHHHHHHH
Q 031049 36 EDEPHITLL---VTQ--PCSKPEDILPDSIPLVDKFPISLSLFSVLPR--KNNLLCLLIA-QS---LNLRELHDNLYEAL 104 (166)
Q Consensus 36 ~~~~HiTL~---~~~--~~~~~~~~l~~~~~~~~~f~l~l~~~g~F~~--~~~vl~l~~~-~~---~~L~~L~~~l~~~l 104 (166)
..-.||+|. ++. .+.....+|++..+...-|-+++.++..|-+ +.|+ |++.+ .+ +.+.++-+.+.+.+
T Consensus 119 ~~~fHlSLsr~VvLr~HqI~~fi~~L~~~l~s~~rf~~t~n~~~iytN~e~TRt-Fi~leitt~~~~~~~~~i~~vd~Vm 197 (269)
T KOG3102|consen 119 GREFHLSLSRNVVLRVHQINSFISMLRQKLQSQKRFLITFNKWEIYTNDEHTRT-FISLEITTSGLSEISKQIDAVDEVM 197 (269)
T ss_pred cceEEEeeccceEEEeehhhHHHHHHHHHHhhhhhheEeecceEEEecccccee-EEEEEechhhHHHHHHHHHHHHHHH
Confidence 457899995 232 1666777777777777889999999999987 3444 44443 33 45566777888888
Q ss_pred HhcCCCCCCCCCCCCeecceeecC
Q 031049 105 ATKGLQIDKEYVPGVWFPHCMLAP 128 (166)
Q Consensus 105 ~~~g~~~~~~~~~~~f~PHiTLar 128 (166)
..+. ++..|+.. .+|++|+=
T Consensus 198 ~~~n--L~~FY~DP--sfHiSL~W 217 (269)
T KOG3102|consen 198 KLHN--LPEFYKDP--SFHISLVW 217 (269)
T ss_pred HHcC--chhhhcCC--CCCceEEE
Confidence 8876 66666432 77998884
No 26
>PHA02574 57B hypothetical protein; Provisional
Probab=70.80 E-value=9 Score=27.80 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCeeEEee
Q 031049 14 KSKILDSMKLVRELNIPNLIKPEDEPHITLLV 45 (166)
Q Consensus 14 ~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~ 45 (166)
...+..+++++++.... .-.++-.|||||.=
T Consensus 88 ~~~L~~L~~~l~~~l~~-~~~r~F~PHITLaR 118 (149)
T PHA02574 88 SEYLQCRHKYARALGAT-HDFDDYTPHITLSY 118 (149)
T ss_pred CHHHHHHHHHHHHHhhc-CCCCCcCCcEEEee
Confidence 34455566666654321 11145689999964
No 27
>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.
Probab=66.99 E-value=37 Score=25.53 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=28.8
Q ss_pred eecceeecC-CC-CchhHHHHHHHHhhc----------CcCceEEEeEEEEEecCCC
Q 031049 120 WFPHCMLAP-SV-PTDRVGNVCNILAKV----------KLPLQGDVEHVRLVQLPPN 164 (166)
Q Consensus 120 f~PHiTLar-~~-~~~~~~~~~~~l~~~----------~~p~~~~v~~i~L~~~~p~ 164 (166)
-+-||||+- .+ +.+++..+.+.+... ..|+.+++.++..|.-+|.
T Consensus 41 ~~lHlTL~vl~L~~~~~i~~a~~~L~~~~~~i~~~~~~~~~~~i~l~Gl~~f~~d~~ 97 (209)
T PF10469_consen 41 EKLHLTLGVLSLDTDEEIEKAKEALKSLKQEIKDQLQNPPPLKITLKGLGYFNDDPS 97 (209)
T ss_pred ccceEEEEEeeCCCHHHHHHHHHHHHHHHHHHhhhccCCCCceEEeeechhhCCCCC
Confidence 456999993 33 334555555555432 2567888888888877654
No 28
>PF08975 2H-phosphodiest: Domain of unknown function (DUF1868); InterPro: IPR015069 This family consist of hypothetical bacterial proteins. ; PDB: 2FSQ_A.
Probab=52.31 E-value=10 Score=26.42 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=24.9
Q ss_pred ecChhHHHHHHHHHHHHHHhcC-CCCC-CCCCCCeeEEe
Q 031049 8 YFDDALKSKILDSMKLVRELNI-PNLI-KPEDEPHITLL 44 (166)
Q Consensus 8 ~~~~~~~~~i~~l~~~L~~~~~-~~~~-~~~~~~HiTL~ 44 (166)
..+.+..+++.+++++|++... ..+. -+++-+|+|++
T Consensus 21 ~~~s~~~~al~~i~~~l~~~~~~~k~a~lP~sS~HMTVf 59 (118)
T PF08975_consen 21 PQDSPFYAALLAIQQRLRESPFADKLAFLPPSSYHMTVF 59 (118)
T ss_dssp -TTSHHHHHHHHHHHHHHTSGGGGGEEE--GGG-EEEEE
T ss_pred CCCChHHHHHHHHHHHHHhCccccceEecCcchhhhhhh
Confidence 3456788899999999998644 2221 37789999997
No 29
>COG5255 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.74 E-value=39 Score=26.00 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHHHHHhcC-CCCC-CCCCCCeeEEe
Q 031049 10 DDALKSKILDSMKLVRELNI-PNLI-KPEDEPHITLL 44 (166)
Q Consensus 10 ~~~~~~~i~~l~~~L~~~~~-~~~~-~~~~~~HiTL~ 44 (166)
-+++.+.+..+++++..... ..+. .+.+-.|+|++
T Consensus 51 gs~t~~vvl~i~~r~~~mpfadklt~tP~sSlHMTvf 87 (239)
T COG5255 51 GSDTEEVVLIIRSRYLEMPFADKLTFTPVSSLHMTVF 87 (239)
T ss_pred CCchHHHHHHHHHHhhccchhhhhccCCcchhhHHHH
Confidence 45678889999999887543 2222 37788999996
No 30
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=41.21 E-value=98 Score=25.38 Aligned_cols=83 Identities=8% Similarity=-0.033 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEee-c-----CCCCChhhhhcccCCCcCceeEEEeeeeecCCCCcEEEEE
Q 031049 13 LKSKILDSMKLVRELNIPNLIKPEDEPHITLLV-T-----QPCSKPEDILPDSIPLVDKFPISLSLFSVLPRKNNLLCLL 86 (166)
Q Consensus 13 ~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~~-~-----~~~~~~~~~l~~~~~~~~~f~l~l~~~g~F~~~~~vl~l~ 86 (166)
+.+.++=+.++....|.+.+ ...+|+.+.- . .|...+.+-+.++....++|++.+.|.--|++
T Consensus 209 l~Eyv~Wls~R~~~~g~~gY---hP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~pL~IEgP~DaGs-------- 277 (410)
T COG3799 209 LREYVRWLSDRILSKGTSGY---HPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGLPLYIEGPVDAGS-------- 277 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCC---CccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCCceeeeccccCCC--------
Confidence 34444444445444454443 2356666542 1 23444555555555567899999999877765
Q ss_pred ecCChhHHHHHHHHHHHHHhcCC
Q 031049 87 IAQSLNLRELHDNLYEALATKGL 109 (166)
Q Consensus 87 ~~~~~~L~~L~~~l~~~l~~~g~ 109 (166)
.+.-.++..+|.+.|...|.
T Consensus 278 ---~~aQI~~~a~i~~~L~~~Gs 297 (410)
T COG3799 278 ---KPAQIRLLAAITKELTRLGS 297 (410)
T ss_pred ---CHHHHHHHHHHHHHHhhcCC
Confidence 23445566777888888774
No 31
>COG5255 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.49 E-value=19 Score=27.68 Aligned_cols=73 Identities=14% Similarity=0.003 Sum_probs=39.3
Q ss_pred EEEecC-hhHHHHHHHHHHHHHHh-cCCCCCCCCCCCeeEEeec-----CC-CCChh----hhhcccCCCcCceeEEEee
Q 031049 5 IKLYFD-DALKSKILDSMKLVREL-NIPNLIKPEDEPHITLLVT-----QP-CSKPE----DILPDSIPLVDKFPISLSL 72 (166)
Q Consensus 5 i~l~~~-~~~~~~i~~l~~~L~~~-~~~~~~~~~~~~HiTL~~~-----~~-~~~~~----~~l~~~~~~~~~f~l~l~~ 72 (166)
|.+.+. ++-...+.++.+.|.+. |.+.--+..-..||||... ++ .++.. +.++-++.+.+-+++.--.
T Consensus 143 i~v~paddad~~~l~~~Rd~ls~~~g~r~P~HDaY~FHITlgYl~~wltpee~a~~q~~l~e~~e~la~~~PvIe~~ap~ 222 (239)
T COG5255 143 ILVEPADDADAKILEEWRDYLSEKFGYRHPDHDAYQFHITLGYLRIWLTPEEEAEWQAVLDELLEILAEKAPVIEVNAPD 222 (239)
T ss_pred eEeccCCHHHHHHHHHHHHHHhhhhcccCCCCcceEEEEEeeeEeeecChhhhHHHHHHHHHHHHHHHhhCCeEEecCcc
Confidence 344444 44555566666677764 4421112445899999762 22 33333 3333344456667777666
Q ss_pred eeecC
Q 031049 73 FSVLP 77 (166)
Q Consensus 73 ~g~F~ 77 (166)
...|.
T Consensus 223 yc~f~ 227 (239)
T COG5255 223 YCVFE 227 (239)
T ss_pred hhhhh
Confidence 66664
No 32
>PHA02977 hypothetical protein; Provisional
Probab=37.72 E-value=33 Score=24.89 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=21.0
Q ss_pred CCCCCCCCeeEEeec-CCCCChhhhhcccCCCcCceeEEE
Q 031049 32 LIKPEDEPHITLLVT-QPCSKPEDILPDSIPLVDKFPISL 70 (166)
Q Consensus 32 ~~~~~~~~HiTL~~~-~~~~~~~~~l~~~~~~~~~f~l~l 70 (166)
.++++.+||||+... .|..+-..++-+.++.+..-++.+
T Consensus 158 ~~d~~w~phitigyv~~dd~dnk~r~ie~~~~frg~~ikv 197 (201)
T PHA02977 158 LSDNPWCPHITIGYVKADDEDNKKRFIECAEAFRGQEIKV 197 (201)
T ss_pred ccCCCCCCceEEEeecccchhhHHHHHHHHHHhCCCeeEE
Confidence 345788999999763 333333444444443333334443
No 33
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=37.46 E-value=51 Score=22.67 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=22.2
Q ss_pred CcCceeEEEeeeeecCCCCcEEEEEec
Q 031049 62 LVDKFPISLSLFSVLPRKNNLLCLLIA 88 (166)
Q Consensus 62 ~~~~f~l~l~~~g~F~~~~~vl~l~~~ 88 (166)
..+||.++|..++.+..+.+++=+.+.
T Consensus 41 ~sSPFhVRFGk~~vl~~~ek~V~I~VN 67 (110)
T PF04571_consen 41 KSSPFHVRFGKLGVLRPREKVVDIEVN 67 (110)
T ss_pred ecCccEEEEcceeeecccCcEEEEEEC
Confidence 468999999999999876778876664
No 34
>PLN00108 unknown protein; Provisional
Probab=36.40 E-value=82 Score=25.06 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=31.1
Q ss_pred eecceeecC-CC-CchhHHHHHHHHhhc---------CcCceEEEeEEEEEecCCC
Q 031049 120 WFPHCMLAP-SV-PTDRVGNVCNILAKV---------KLPLQGDVEHVRLVQLPPN 164 (166)
Q Consensus 120 f~PHiTLar-~~-~~~~~~~~~~~l~~~---------~~p~~~~v~~i~L~~~~p~ 164 (166)
-+=|+||+- .+ +.+++.++.+.|+.. ..|+++.+.++..|.-+|.
T Consensus 90 ~~LHLTLgmL~L~~~eev~kA~~~L~s~~~~i~~~l~~~pl~I~lkGL~~Mnddps 145 (257)
T PLN00108 90 KTFHLTVVMLKLENNESVVKAQNILKSICSNVRQALKDRPVFIRLRGLDCMNGSLD 145 (257)
T ss_pred CceEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEEeehhcCCCcc
Confidence 455999993 33 356677776666532 2578889999999876664
No 35
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function.
Probab=34.79 E-value=39 Score=25.32 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCeecce
Q 031049 94 RELHDNLYEALATKGLQIDKEYVPGVWFPHC 124 (166)
Q Consensus 94 ~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHi 124 (166)
.++.+.++++++..|..+. +.+. |+||.
T Consensus 18 Ldl~r~~eRa~rRA~lp~a-~SqG--FnP~P 45 (187)
T PF10105_consen 18 LDLMRVFERALRRAGLPVA-YSQG--FNPHP 45 (187)
T ss_pred HHHHHHHHHHhhhcCCCee-ecCC--CCCCc
Confidence 4567788888888884222 2343 88874
No 36
>COG3795 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.05 E-value=98 Score=21.72 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=22.9
Q ss_pred CceEEEEecChh------------HHHHHHHHHHHHHHhcC
Q 031049 1 MQYAIKLYFDDA------------LKSKILDSMKLVRELNI 29 (166)
Q Consensus 1 m~~~i~l~~~~~------------~~~~i~~l~~~L~~~~~ 29 (166)
|-|+|.++.+++ +-+.+..+.++|++.|.
T Consensus 1 M~yaiL~y~~e~~~~a~~~e~daalm~~~~~y~e~L~~aG~ 41 (123)
T COG3795 1 MRYAILCYADEDVLAAWSVEEDAALMAALGKYNERLAKAGV 41 (123)
T ss_pred CeEEEEEecChhhhhcCCcCccHHHHHHHHHHHHHHHHcCC
Confidence 788888887666 56677778899998875
No 37
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=33.44 E-value=38 Score=24.67 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=9.8
Q ss_pred CCCCeecceeecC
Q 031049 116 VPGVWFPHCMLAP 128 (166)
Q Consensus 116 ~~~~f~PHiTLar 128 (166)
++.+|.||.+.+-
T Consensus 53 ~~~SFlPH~~~~~ 65 (154)
T PRK06646 53 SRKQFIPHGSKLD 65 (154)
T ss_pred CCCCCCCCCCCCC
Confidence 4456999998664
No 38
>COG5011 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.87 E-value=92 Score=23.91 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=26.4
Q ss_pred EEEEEecCChhH---HHHHHHHHHHHHhcCCCCCCCCCCCCeecceee
Q 031049 82 LLCLLIAQSLNL---RELHDNLYEALATKGLQIDKEYVPGVWFPHCML 126 (166)
Q Consensus 82 vl~l~~~~~~~L---~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTL 126 (166)
++|.+-..+-.+ .++-+.+.+..+..|+ +..|-. .|+||..+
T Consensus 4 ~v~f~Kqg~m~fvShLdlmRlidR~iRRAgl--piayT~-GFhP~prm 48 (228)
T COG5011 4 RVWFGKQGNMAFVSHLDLMRLIDRTIRRAGL--PIAYTG-GFHPHPRM 48 (228)
T ss_pred EEEEcCCCchhHHHHHHHHHHHHHHHHhcCC--ceeecC-CCCCCCce
Confidence 566665554433 4566778888888884 444433 38888544
No 39
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=29.36 E-value=20 Score=28.01 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEe------ecCCCCChhhhhcccCCCcCceeEEEeeeeecCCCCcEEE
Q 031049 11 DALKSKILDSMKLVRELNIPNLIKPEDEPHITLL------VTQPCSKPEDILPDSIPLVDKFPISLSLFSVLPRKNNLLC 84 (166)
Q Consensus 11 ~~~~~~i~~l~~~L~~~~~~~~~~~~~~~HiTL~------~~~~~~~~~~~l~~~~~~~~~f~l~l~~~g~F~~~~~vl~ 84 (166)
+.+.+.+.=+.++..+.+.+.+ ...+||-+. |..+.+.+.+=+.++++...||.+++.|.--.++
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y---~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~~L~iEgP~d~g~------ 117 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDY---RPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPFKLRIEGPMDAGS------ 117 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT------EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS-EEEE-SB--SS------
T ss_pred HHHHHHHHHHHHHHHHhcCCCC---CccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCCeeeeeCCcCCCC------
Confidence 3455666666667666654444 336888774 2344555555555555556899999997644332
Q ss_pred EEecCChhHHHHHHHHHHHHHhcCC
Q 031049 85 LLIAQSLNLRELHDNLYEALATKGL 109 (166)
Q Consensus 85 l~~~~~~~L~~L~~~l~~~l~~~g~ 109 (166)
.+.-.+.-..|.+.|...|.
T Consensus 118 -----r~~QI~~l~~Lr~~L~~~g~ 137 (248)
T PF07476_consen 118 -----REAQIEALAELREELDRRGI 137 (248)
T ss_dssp -----HHHHHHHHHHHHHHHHHCT-
T ss_pred -----hHHHHHHHHHHHHHHHhcCC
Confidence 12333334566666777663
No 40
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=29.22 E-value=55 Score=17.77 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=18.7
Q ss_pred ceEEEEecChhHHHHHHHHHHHHH
Q 031049 2 QYAIKLYFDDALKSKILDSMKLVR 25 (166)
Q Consensus 2 ~~~i~l~~~~~~~~~i~~l~~~L~ 25 (166)
+|-|.+.|++...+-+.+-..+|-
T Consensus 11 ty~V~~~F~~~s~et~~DKi~rli 34 (37)
T PF14202_consen 11 TYVVEVHFSETSKETMQDKIKRLI 34 (37)
T ss_pred EEEEEEEECCCccccHHHHHHHHH
Confidence 588999999998888877666553
No 41
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=29.16 E-value=1e+02 Score=23.11 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=24.7
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHHhc
Q 031049 79 KNNLLCLLIAQSLNLRELHDNLYEALATK 107 (166)
Q Consensus 79 ~~~vl~l~~~~~~~L~~L~~~l~~~l~~~ 107 (166)
+.++||...+..+....+.++|-+.++.+
T Consensus 127 ~~plL~~~le~~~~~~~lAqRLL~~lqi~ 155 (176)
T PF11111_consen 127 NSPLLFADLENEEGRTSLAQRLLRMLQIC 155 (176)
T ss_pred CCCEEEeecccchHHHHHHHHHHHHHHHH
Confidence 46788999888888999999999988875
No 42
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=28.78 E-value=1.6e+02 Score=22.69 Aligned_cols=43 Identities=9% Similarity=0.294 Sum_probs=25.6
Q ss_pred eEEEEecChhHHHHHHHHHH----HHHHhcCCCCCCCCCCCeeEEee
Q 031049 3 YAIKLYFDDALKSKILDSMK----LVRELNIPNLIKPEDEPHITLLV 45 (166)
Q Consensus 3 ~~i~l~~~~~~~~~i~~l~~----~L~~~~~~~~~~~~~~~HiTL~~ 45 (166)
.|+++...+...+.|..+.+ .|++.+.+.++.....+||+++-
T Consensus 142 ~FL~l~V~~~~~~~l~~l~~~i~~~l~~~~lp~~Y~~~~~fHvSIAw 188 (239)
T PF09749_consen 142 SFLALRVSEGSNNELKRLLDRINEVLKEFGLPPFYDEDPSFHVSIAW 188 (239)
T ss_pred EEEEEEecccccHHHHHHHHHHHHHHHHhCCCcccCCCCCCEEEEEE
Confidence 35566555554443444444 44556776564235699999985
No 43
>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=27.71 E-value=46 Score=24.47 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=32.5
Q ss_pred CCCCCeeEEeec--CC-CCChhhhhcccCCCcCceeEEEeeeeecCC
Q 031049 35 PEDEPHITLLVT--QP-CSKPEDILPDSIPLVDKFPISLSLFSVLPR 78 (166)
Q Consensus 35 ~~~~~HiTL~~~--~~-~~~~~~~l~~~~~~~~~f~l~l~~~g~F~~ 78 (166)
..-+.|+||--. .+ ...+..+++.......+=.+.+++++.|..
T Consensus 105 deFRFHmTLTg~l~~~~~~~~~~~l~~~f~~~l~~p~~id~laLf~e 151 (160)
T PF06299_consen 105 DEFRFHMTLTGRLDPAERARVEAALEAHFAPLLPEPLRIDSLALFGE 151 (160)
T ss_pred CcCEeeEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCeeecceEEEec
Confidence 456899999642 22 666778887776666666889999999974
No 44
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=27.27 E-value=1.3e+02 Score=21.02 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=34.8
Q ss_pred CChhhhhcccCCCcCceeEEEeeeeecCCCCcEEEEEecCChhHHHHHHHHHHHHH
Q 031049 50 SKPEDILPDSIPLVDKFPISLSLFSVLPRKNNLLCLLIAQSLNLRELHDNLYEALA 105 (166)
Q Consensus 50 ~~~~~~l~~~~~~~~~f~l~l~~~g~F~~~~~vl~l~~~~~~~L~~L~~~l~~~l~ 105 (166)
+++...++++. -..+.++---=-.+...|+++|+-......-..|.+.+.++|.
T Consensus 68 ~EV~pvi~aL~--~~GI~vtAlHNH~l~e~Prl~ymH~~~~gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 68 DEVNPVISALR--KNGIEVTALHNHWLFEQPRLFYMHIWGVGDPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHH--HCCceEEEEecccccCCCCEEEEEEEecCCHHHHHHHHHHHHh
Confidence 33444444442 2345554433334444699999999888888889999988875
No 45
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=27.08 E-value=55 Score=23.29 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=9.6
Q ss_pred CCCCeecceeecC
Q 031049 116 VPGVWFPHCMLAP 128 (166)
Q Consensus 116 ~~~~f~PHiTLar 128 (166)
++++|.||...+-
T Consensus 53 ~~~sFlPH~~~~~ 65 (142)
T PRK05728 53 RDESFLPHGLAGE 65 (142)
T ss_pred CCCcCCCCCcCCC
Confidence 4456999997664
No 46
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=26.14 E-value=85 Score=25.23 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=25.1
Q ss_pred ecceeecCCCCchhHHHHHHHHhhcCcCceEEEeEEEEEecCC
Q 031049 121 FPHCMLAPSVPTDRVGNVCNILAKVKLPLQGDVEHVRLVQLPP 163 (166)
Q Consensus 121 ~PHiTLar~~~~~~~~~~~~~l~~~~~p~~~~v~~i~L~~~~p 163 (166)
.||+| +|+.+...+.+.+..+.... |.+|.+.+-+|
T Consensus 81 i~Hlt-c~d~n~~~i~~~l~~~~~~G------i~~ilaLrGDp 116 (291)
T COG0685 81 IPHLT-CRDRNRIEIISILKGAAALG------IRNILALRGDP 116 (291)
T ss_pred ceeec-ccCCCHHHHHHHHHHHHHhC------CceEEEecCCC
Confidence 89999 77778777777776666533 55666665555
No 47
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=25.53 E-value=1.1e+02 Score=20.52 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=27.5
Q ss_pred eEEEEecChhHHHHHHHHHHHHHHhcC-CCCCCCCCCCe
Q 031049 3 YAIKLYFDDALKSKILDSMKLVRELNI-PNLIKPEDEPH 40 (166)
Q Consensus 3 ~~i~l~~~~~~~~~i~~l~~~L~~~~~-~~~~~~~~~~H 40 (166)
|-|-+.+.++....+.++-+.|.+.|+ ..+.+...+||
T Consensus 9 YVVt~~~~e~~l~d~~~L~~~lt~~GF~~tl~D~~G~~H 47 (96)
T PF11080_consen 9 YVVTFEYQEAGLTDINELNNHLTRAGFSTTLTDEDGNPH 47 (96)
T ss_pred EEEEEEeccCChHHHHHHHHHHHhcCceeEEecCCCCEe
Confidence 777788888888888888888888877 33334455666
No 48
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=23.21 E-value=1e+02 Score=20.35 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 031049 11 DALKSKILDSMKLVRELNI 29 (166)
Q Consensus 11 ~~~~~~i~~l~~~L~~~~~ 29 (166)
.|+.++|.+.++.|++.|+
T Consensus 71 ~eL~~eI~eAK~dLr~kGv 89 (91)
T PF08285_consen 71 KELQKEIKEAKADLRKKGV 89 (91)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 3567788888888888775
No 49
>COG1980 Archaeal fructose 1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=22.48 E-value=1.9e+02 Score=23.40 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=43.7
Q ss_pred eeeeecCCCCcEEEEEec-CC---------------hhHHHHHHHHHHHHHhcCCCCCCCCCCCCeecceeecCCCCchh
Q 031049 71 SLFSVLPRKNNLLCLLIA-QS---------------LNLRELHDNLYEALATKGLQIDKEYVPGVWFPHCMLAPSVPTDR 134 (166)
Q Consensus 71 ~~~g~F~~~~~vl~l~~~-~~---------------~~L~~L~~~l~~~l~~~g~~~~~~~~~~~f~PHiTLar~~~~~~ 134 (166)
.....|-+.||||-++.. .+ +.-.+....+.+.++..| | |.||--=.....-..
T Consensus 281 a~ptRFDGPpRvialGfql~~gkLiGp~DlFdDpaFD~aRq~A~eiadyiRR~G--------p--F~PHrLp~eeMEYTt 350 (369)
T COG1980 281 AKPTRFDGPPRVIALGFQLKNGKLIGPVDLFDDPAFDYARQVALEIADYIRRHG--------P--FEPHRLPPEEMEYTT 350 (369)
T ss_pred CCccccCCCceEEEeeEEeeCCEEecchhhccCcchHHHHHHHHHHHHHHHhcC--------C--CCCCCCChHHccccc
Confidence 344556556889987754 11 234566677777777766 2 999964444455566
Q ss_pred HHHHHHHHhhcCcCc
Q 031049 135 VGNVCNILAKVKLPL 149 (166)
Q Consensus 135 ~~~~~~~l~~~~~p~ 149 (166)
++.+++.+++.+.+.
T Consensus 351 lP~VlekLkdrf~~~ 365 (369)
T COG1980 351 LPKVLEKLKDRFEDI 365 (369)
T ss_pred HHHHHHHHHhhccch
Confidence 788888887755443
No 50
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=20.89 E-value=69 Score=22.58 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=5.8
Q ss_pred CCCCeecceeecC
Q 031049 116 VPGVWFPHCMLAP 128 (166)
Q Consensus 116 ~~~~f~PHiTLar 128 (166)
++.+|.||...+-
T Consensus 53 ~~~sFlPH~~~~~ 65 (137)
T PF04364_consen 53 SPDSFLPHGLAGE 65 (137)
T ss_dssp STT----EEETT-
T ss_pred CCCCCCCCcccCC
Confidence 4567999999664
No 51
>PRK00907 hypothetical protein; Provisional
Probab=20.31 E-value=1.2e+02 Score=20.07 Aligned_cols=62 Identities=8% Similarity=-0.049 Sum_probs=35.0
Q ss_pred CeeEEeecCC-CCC----hhhhhcccCCC--cCceeEEEeeeeecCCCCcEEEEEecCChhHHHHHHHHHH
Q 031049 39 PHITLLVTQP-CSK----PEDILPDSIPL--VDKFPISLSLFSVLPRKNNLLCLLIAQSLNLRELHDNLYE 102 (166)
Q Consensus 39 ~HiTL~~~~~-~~~----~~~~l~~~~~~--~~~f~l~l~~~g~F~~~~~vl~l~~~~~~~L~~L~~~l~~ 102 (166)
-..++++.+. -+. +.+.++.-+.. ...+..+-++=|.|-. =.+.+.+..-+.|.+|+++|..
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~S--vtv~i~ats~eQld~iY~~L~~ 84 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVS--VRIGFRAESREQYDAAHQALRD 84 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEE--EEEEEEECCHHHHHHHHHHHhh
Confidence 3566776554 334 44444433322 2345566777777753 3455555555788888887753
Done!