BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031051
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAG--RRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
K AF + D D DG I+ ++L + +EE+ + MIS D + +G +E+DEF
Sbjct: 12 FKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEE---LQDMISEVDADGNGTIEFDEF 68
Query: 77 ERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDI 136
++ +++ FKV DKD +G +S +L+ M G TD+++
Sbjct: 69 LSLM-------AKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEV 121
Query: 137 KAMIRLGGGDENDGVSFDGLLKIL 160
+ MI+ D + V+++ +K++
Sbjct: 122 EQMIKEADLDGDGQVNYEEFVKMM 145
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + +D LK AF V D D++G IS +LR G + ++E+ + MI AD
Sbjct: 73 AKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEE---VEQMIKEAD 129
Query: 65 FNKDGYVEYDEFERVL 80
+ DG V Y+EF +++
Sbjct: 130 LDGDGQVNYEEFVKMM 145
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + + T+++++ MI D N + FD L ++A
Sbjct: 14 EAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSLMA 73
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + DG +++
Sbjct: 310 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTIDFP 366
Query: 75 EFERVL--DLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAAT 132
EF ++ ++Y + + F+V DKDG+G +S +L+ M G T
Sbjct: 367 EFLTMMARKMKYTDSEEE---------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLT 417
Query: 133 DDDIKAMIRLGGGDENDGVSFDGLLKILA 161
D+++ MIR D + V+++ ++++
Sbjct: 418 DEEVDEMIREADIDGDGQVNYEEFVQMMT 446
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + DG +++
Sbjct: 310 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTIDFP 366
Query: 75 EFERVL--DLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAAT 132
EF ++ ++Y + + F+V DKDG+G +S +L+ M G T
Sbjct: 367 EFLTMMARKMKYTDSEEE---------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLT 417
Query: 133 DDDIKAMIRLGGGDENDGVSFDGLLKILA 161
D+++ MIR D + V+++ ++++
Sbjct: 418 DEEVDEMIREADIDGDGQVNYEEFVQMMT 446
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + DG +++
Sbjct: 311 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTIDFP 367
Query: 75 EFERVL--DLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAAT 132
EF ++ ++Y + + F+V DKDG+G +S +L+ M G T
Sbjct: 368 EFLTMMARKMKYTDSEEE---------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLT 418
Query: 133 DDDIKAMIRLGGGDENDGVSFDGLLKILA 161
D+++ MIR D + V+++ ++++
Sbjct: 419 DEEVDEMIREADIDGDGQVNYEEFVQMMT 447
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ +++ F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLNLM-------ARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
++ MIR D + V+++ ++++
Sbjct: 120 EVDEMIREADVDGDGQVNYEEFVQVM 145
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + +D +LK AF V D D +G IS +LR G + ++E+ D MI AD
Sbjct: 73 ARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD---EMIREAD 129
Query: 65 FNKDGYVEYDEFERVL 80
+ DG V Y+EF +V+
Sbjct: 130 VDGDGQVNYEEFVQVM 145
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 14 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 73
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 7 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 63
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + +++ F+V DKDG+G +S +L+ M G TD+
Sbjct: 64 EFLNLMARKMKDTDSEEE-------LKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 116
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
++ MIR D + V+++ ++++
Sbjct: 117 EVDEMIREADVDGDGQVNYEEFVQVM 142
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + +D LK AF V D D +G IS +LR G + ++E+ D MI AD
Sbjct: 70 ARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD---EMIREAD 126
Query: 65 FNKDGYVEYDEFERVL 80
+ DG V Y+EF +V+
Sbjct: 127 VDGDGQVNYEEFVQVM 142
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 11 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 70
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + DG +++
Sbjct: 310 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTIDFP 366
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 367 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 419
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 420 EVDEMIREADIDGDGQVNYEEFVQMMT 446
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 370 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 426
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 427 EADIDGDGQVNYEEFVQMM 445
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + +++ F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLNLMARKMKDTDSEEE-------LKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
++ MIR D + V+++ ++++
Sbjct: 120 EVDEMIREADVDGDGQVNYEEFVQVM 145
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + +D LK AF V D D +G IS +LR G + ++E+ D MI AD
Sbjct: 73 ARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD---EMIREAD 129
Query: 65 FNKDGYVEYDEFERVL 80
+ DG V Y+EF +V+
Sbjct: 130 VDGDGQVNYEEFVQVM 145
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 14 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 73
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + DG +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLTMM-------ARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 120 EVDEMIREADIDGDGQVNYEEFVQMMT 146
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 70 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 126
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 127 EADIDGDGQVNYEEFVQMM 145
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 311 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 367
Query: 75 EFERVL--DLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAAT 132
EF ++ ++Y + + F+V DKDG+G +S +L+ M G T
Sbjct: 368 EFLTMMARKMKYTDSEEE---------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLT 418
Query: 133 DDDIKAMIRLGGGDENDGVSFDGLLKILA 161
D+++ MIR D + V+++ ++++
Sbjct: 419 DEEVDEMIREADIDGDGQVNYEEFVQMMT 447
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 120 EVDEMIREANIDGDGQVNYEEFVQMMT 146
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 70 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 126
Query: 62 VADFNKDGYVEYDEFERVL 80
A+ + DG V Y+EF +++
Sbjct: 127 EANIDGDGQVNYEEFVQMM 145
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
S K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + +++ F+V DKD +G +S +L+ M G TD+
Sbjct: 68 EFLNLMARKMKDTDSEEE-------LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
++ MIR D + +++D +K++
Sbjct: 121 EVDEMIREADVDGDGQINYDEFVKVM 146
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + +D LK AF V D D++G IS +LR G + ++E+ D MI AD
Sbjct: 74 ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVD---EMIREAD 130
Query: 65 FNKDGYVEYDEFERVL 80
+ DG + YDEF +V+
Sbjct: 131 VDGDGQINYDEFVKVM 146
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 15 EAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 74
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 6 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 62
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 63 EFLTMMARKMKDTDSEE--------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 114
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 115 EVDEMIREANIDGDGQVNYEEFVQMMT 141
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 277 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 333
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 334 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 386
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 387 EVDEMIREADIDGDGQVNYEEFVQMMT 413
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 337 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 393
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 394 EADIDGDGQVNYEEFVQMM 412
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ L+E FKV D+DG+G +S +L+ M G TDD
Sbjct: 67 EFLSLM------ARKMKEQDSEEELIE-AFKVFDRDGNGLISAAELRHVMTNLGEKLTDD 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + ++++ ++++
Sbjct: 120 EVDEMIREADIDGDGHINYEEFVRMMV 146
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + ++ L AF V D D +G IS +LR G + ++ D + MI AD
Sbjct: 73 ARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTD---DEVDEMIREAD 129
Query: 65 FNKDGYVEYDEFERVL 80
+ DG++ Y+EF R++
Sbjct: 130 IDGDGHINYEEFVRMM 145
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ L+E FKV D+DG+G +S +L+ M G TDD
Sbjct: 67 EFLSLM------ARKMKEQDSEEELIE-AFKVFDRDGNGLISAAELRHVMTNLGEKLTDD 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + ++++ ++++
Sbjct: 120 EVDEMIREADIDGDGHINYEEFVRMMV 146
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + ++ L AF V D D +G IS +LR G + ++ D + MI AD
Sbjct: 73 ARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTD---DEVDEMIREAD 129
Query: 65 FNKDGYVEYDEFERVL 80
+ DG++ Y+EF R++
Sbjct: 130 IDGDGHINYEEFVRMM 145
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + DG +++
Sbjct: 302 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTIDFP 358
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 359 EFLIMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 411
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 412 EVDEMIREADIDGDGQVNYEEFVQMMT 438
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + +D ++ AF V D D +G IS +LR G + ++E+ D MI AD
Sbjct: 365 ARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIREAD 421
Query: 65 FNKDGYVEYDEFERVL 80
+ DG V Y+EF +++
Sbjct: 422 IDGDGQVNYEEFVQMM 437
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 277 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 333
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 334 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 386
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 387 EVDEMIREADIDGDGQVNYEEFVQMMT 413
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 337 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 393
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 394 EADIDGDGQVNYEEFVQMM 412
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 274 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 330
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 331 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 383
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 384 EVDEMIREADIDGDGQVNYEEFVQMMT 410
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 334 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 390
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 391 EADIDGDGQVNYEEFVQMM 409
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 311 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 367
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 368 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 420
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 421 EVDEMIREADIDGDGQVNYEEFVQMMT 447
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 371 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 427
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 428 EADIDGDGQVNYEEFVQMM 446
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 311 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 367
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 368 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 420
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 421 EVDEMIREADIDGDGQVNYEEFVQMMT 447
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 371 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 427
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 428 EADIDGDGQVNYEEFVQMM 446
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 312 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 368
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 369 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 421
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 422 EVDEMIREADIDGDGQVNYEEFVQMMT 448
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 372 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 428
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 429 EADIDGDGQVNYEEFVQMM 447
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 68 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 121 EVDQMIREADIDGDGQVNYEEFVQMMT 147
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 71 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---QMIR 127
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 128 EADIDGDGQVNYEEFVQMM 146
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 6 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 62
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 63 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 115
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 116 EVDEMIREADIDGDGQVNYEEFVQMMT 142
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 66 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 122
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 123 EADIDGDGQVNYEEFVQMM 141
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 8 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 64
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 65 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 117
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 118 EVDEMIREADIDGDGQVNYEEFVQMMT 144
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 68 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 124
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 125 EADIDGDGQVNYEEFVQMM 143
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 7 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 63
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 64 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 116
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 117 EVDEMIREADIDGDGQVNYEEFVQMMT 143
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 67 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 123
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 124 EADIDGDGQVNYEEFVQMM 142
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 311 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 367
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 368 EFLTMM-------ARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 420
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 421 EVDEMIREADIDGDGQVNYEEFVQMMT 447
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKD 68
+D ++ AF V D D +G IS +LR G + ++E+ D MI AD + D
Sbjct: 378 KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIREADIDGD 434
Query: 69 GYVEYDEFERVL 80
G V Y+EF +++
Sbjct: 435 GQVNYEEFVQMM 446
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 68 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVQMMT 147
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 71 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 127
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 128 EADIDGDGQVNYEEFVQMM 146
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 12 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 68
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 69 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 121
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 122 EVDEMIREADIDGDGQVNYEEFVQMMT 148
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 72 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 128
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 129 EADIDGDGQVNYEEFVQMM 147
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 8 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 64
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 65 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 117
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 118 EVDEMIREADIDGDGQVNYEEFVQMMT 144
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 68 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 124
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 125 EADIDGDGQVNYEEFVQMM 143
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 68 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVQMMT 147
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G ++E+ D MI
Sbjct: 71 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVD---EMIR 127
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 128 EADIDGDGQVNYEEFVQMM 146
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDE 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 120 EVDEMIREADIDGDGQVNYEEFVQMMT 146
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G ++E+ D MI
Sbjct: 70 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVD---EMIR 126
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 127 EADIDGDGQVNYEEFVQMM 145
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 120 EVDEMIREADIDGDGQVNYEEFVQMMT 146
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 70 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 126
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 127 EADIDGDGQVNYEEFVQMM 145
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 68 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVQMMT 147
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 71 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 127
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 128 EADIDGDGQVNYEEFVQMM 146
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 14 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 70
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 71 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 123
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 124 EVDEMIREADIDGDGQVNYEEFVQMMT 150
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 74 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 130
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 131 EADIDGDGQVNYEEFVQMM 149
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 68 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVQMMT 147
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 71 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 127
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 128 EADIDGDGQVNYEEFVQMM 146
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 16 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 72
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 73 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 125
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 126 EVDEMIREADIDGDGQVNYEEFVQMMT 152
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 76 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 132
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 133 EADIDGDGQVNYEEFVQMM 151
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 120 EVDEMIREADIDGDGQVNYEEFVQMMT 146
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 70 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 126
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 127 EADIDGDGQVNYEEFVQMM 145
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 9 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 65
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 66 EFLTMM-------ARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 118
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 119 EVDEMIREADIDGDGQVNYEEFVQMMT 145
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 69 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 125
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 126 EADIDGDGQVNYEEFVQMM 144
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 8 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 64
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 65 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 117
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 118 EVDEMIREADIDGDGQVNYEEFVQMMT 144
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 68 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 124
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 125 EADIDGDGQVNYEEFVQMM 143
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 68 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ ++++
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVQMMT 147
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 71 TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIR 127
Query: 62 VADFNKDGYVEYDEFERVL 80
AD + DG V Y+EF +++
Sbjct: 128 EADIDGDGQVNYEEFVQMM 146
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
S K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + +++ F+V DKD +G +S +L+ M G TD+
Sbjct: 68 EFLNLMARKMKDTDSEEE-------LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
++ MIR D + ++++ +K++
Sbjct: 121 EVDEMIREADVDGDGQINYEEFVKVM 146
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + +D LK AF V D D++G IS +LR G + ++E+ D MI AD
Sbjct: 74 ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVD---EMIREAD 130
Query: 65 FNKDGYVEYDEFERVL 80
+ DG + Y+EF +V+
Sbjct: 131 VDGDGQINYEEFVKVM 146
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 15 EAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 74
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 68 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILAV 162
++ MIR D + V+++ + ++
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVTMMTT 148
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 71 TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD---EMIR 127
Query: 62 VADFNKDGYVEYDEF 76
AD + DG V Y+EF
Sbjct: 128 EADIDGDGQVNYEEF 142
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ + K AF + D D +G IS +L S + +V M + D + + +E+
Sbjct: 8 QIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEI-DVDGNHQIEFS 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + L+E FKV DK+GDG +S +LK + G TD
Sbjct: 67 EFLALMSRQLKSNDSEQE------LLE-AFKVFDKNGDGLISAAELKHVLTSIGEKLTDA 119
Query: 135 DIKAMIR 141
++ M+R
Sbjct: 120 EVDDMLR 126
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLTMMARKMKDSEEE---------IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 117
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ + ++
Sbjct: 118 EVDEMIREADIDGDGQVNYEEFVTMMT 144
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ + K AF + D D +G IS +L S + +V M + D + + +E+
Sbjct: 9 QIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEI-DVDGNHQIEFS 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + L+E FKV DK+GDG +S +LK + G TD
Sbjct: 68 EFLALMSRQLKSNDSEQE------LLE-AFKVFDKNGDGLISAAELKHVLTSIGEKLTDA 120
Query: 135 DIKAMIR 141
++ M+R
Sbjct: 121 EVDDMLR 127
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ + ++
Sbjct: 120 EVDEMIREADIDGDGQVNYEEFVTMMT 146
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 70 TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD---EMIR 126
Query: 62 VADFNKDGYVEYDEF 76
AD + DG V Y+EF
Sbjct: 127 EADIDGDGQVNYEEF 141
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 67 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 119
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ + ++
Sbjct: 120 EVDEMIREADIDGDGQVNYEEFVTMMT 146
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 70 TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD---EMIR 126
Query: 62 VADFNKDGYVEYDEF 76
AD + DG V Y+EF
Sbjct: 127 EADIDGDGQVNYEEF 141
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 68 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ + ++
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVTMMT 147
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 71 TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD---EMIR 127
Query: 62 VADFNKDGYVEYDEF 76
AD + DG V Y+EF
Sbjct: 128 EADIDGDGQVNYEEF 142
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ + K AF + D D G IS +L S + +V M + D + + +E+
Sbjct: 9 QIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEI-DVDGNHAIEFS 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + L+E FKV DK+GDG +S +LK + G TD
Sbjct: 68 EFLALMSRQLKCNDSEQE------LLE-AFKVFDKNGDGLISAAELKHVLTSIGEKLTDA 120
Query: 135 DIKAMIR 141
++ M+R
Sbjct: 121 EVDEMLR 127
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F+V DKDG+G +S +L+ M G TD+
Sbjct: 68 EFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 120
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR D + V+++ + ++
Sbjct: 121 EVDEMIRESDIDGDGQVNYEEFVTMMT 147
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D MI
Sbjct: 71 TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD---EMIR 127
Query: 62 VADFNKDGYVEYDEF 76
+D + DG V Y+EF
Sbjct: 128 ESDIDGDGQVNYEEF 142
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 43.5 bits (101), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
RL+ AF + D+D GKIS +L + S+ D + +++S D N DG V++DEF+
Sbjct: 442 RLERAFRMFDSDNSGKISSTELATIFG---VSDVDSETWKSVLSEVDKNNDGEVDFDEFQ 498
Query: 78 RVL 80
++L
Sbjct: 499 QML 501
Score = 40.4 bits (93), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 24/167 (14%)
Query: 5 GTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA------GRRASEEDGDVI-- 56
G+ L +D K L F +D + DG++ R +L Y G+ AS D +
Sbjct: 348 GSKLTSQDETK--ELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEH 405
Query: 57 --GTMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGR 114
++ DF+K+GY+EY EF V +E F++ D D G+
Sbjct: 406 EVDQVLDAVDFDKNGYIEYSEFVTV--------AMDRKTLLSRERLERAFRMFDSDNSGK 457
Query: 115 LSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDG-VSFDGLLKIL 160
+S +L + G + D + + NDG V FD ++L
Sbjct: 458 ISSTELATIF---GVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 501
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 43.5 bits (101), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
RL+ AF + D+D GKIS +L + S+ D + +++S D N DG V++DEF+
Sbjct: 443 RLERAFRMFDSDNSGKISSTELATIFG---VSDVDSETWKSVLSEVDKNNDGEVDFDEFQ 499
Query: 78 RVL 80
++L
Sbjct: 500 QML 502
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 24/167 (14%)
Query: 5 GTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA------GRRASEEDGDVI-- 56
G+ L +D K L F +D + DG++ R +L Y G+ AS D +
Sbjct: 349 GSKLTSQDETK--ELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEH 406
Query: 57 --GTMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGR 114
++ DF+K+GY+EY EF V +E F++ D D G+
Sbjct: 407 EVDQVLDAVDFDKNGYIEYSEFVTV--------AMDRKTLLSRERLERAFRMFDSDNSGK 458
Query: 115 LSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDG-VSFDGLLKIL 160
+S +L + G + D + + NDG V FD ++L
Sbjct: 459 ISSTELATIF---GVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 502
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVE 72
+ + K AF + D D DG I+ +L G+ +E + + M+S D + +G V+
Sbjct: 8 QVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAE---LRDMMSEIDRDGNGTVD 64
Query: 73 YDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAAT 132
+ EF ++ + + + F+V DKDG+G +S +L+ M G +
Sbjct: 65 FPEFLGMMARKMKDTDNEEE-------IREAFRVFDKDGNGFVSAAELRHVMTRLGEKLS 117
Query: 133 DDDIKAMIRLGGGDENDGVSFDGLLKILA 161
D+++ MIR D + V+++ +++L
Sbjct: 118 DEEVDEMIRAADTDGDGQVNYEEFVRVLV 146
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVAD 64
A + +D ++ AF V D D +G +S +LR G + S+E+ D MI AD
Sbjct: 73 ARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVD---EMIRAAD 129
Query: 65 FNKDGYVEYDEFERVL 80
+ DG V Y+EF RVL
Sbjct: 130 TDGDGQVNYEEFVRVL 145
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 42.7 bits (99), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEED-GDVIGTMISVADFNKDGYVEYDEF 76
RL+ AF++ D D+ GKI++++L + SE+ DV+G AD NKD +++DEF
Sbjct: 436 RLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGE----ADQNKDNMIDFDEF 491
Score = 32.0 bits (71), Expect = 0.19, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 19 LKPAFDVIDADRDGKISRDDL-RAFYAGRRASEEDGDV------IGTMISVADFNKDGYV 71
L F +D + DG++ + +L + R E G++ + ++ DF+K+GY+
Sbjct: 357 LTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYI 416
Query: 72 EYDEFERV-LDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFA 130
EY EF V +D + + F + D D G+++ +L + +
Sbjct: 417 EYSEFISVCMDKQILFSEER---------LRRAFNLFDTDKSGKITKEELANLFGLTSIS 467
Query: 131 -ATDDDIKAMIRLGGGDEN--DGVSFDGLLKIL 160
T +D+ LG D+N + + FD + ++
Sbjct: 468 EKTWNDV-----LGEADQNKDNMIDFDEFVSMM 495
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
RL+ AF + D+D GKIS +L + S+ D + +++S D N DG V++DEF+
Sbjct: 419 RLERAFRMFDSDNSGKISSTELATIFG---VSDVDSETWKSVLSEVDKNNDGEVDFDEFQ 475
Query: 78 RVL 80
++L
Sbjct: 476 QML 478
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 24/167 (14%)
Query: 5 GTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA------GRRASEEDGDVIG- 57
G+ L +D K L F +D + DG++ R +L Y G+ AS D +
Sbjct: 325 GSKLTSQDETK--ELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEH 382
Query: 58 ---TMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGR 114
++ DF+K+GY+EY EF V +E F++ D D G+
Sbjct: 383 EVDQVLDAVDFDKNGYIEYSEFVTV--------AMDRKTLLSRERLERAFRMFDSDNSGK 434
Query: 115 LSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDG-VSFDGLLKIL 160
+S +L + G + D + + NDG V FD ++L
Sbjct: 435 ISSTELATIF---GVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 478
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS +L G+ ++E+ D I I D + G ++++
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFE 76
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + +ED F++ DK+ DG + +L + G T++
Sbjct: 77 EFLVMMVRQMKEDAKGKSEEE----LEDCFRIFDKNADGFIDIEELGEILRATGEHVTEE 132
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
DI+ +++ + + + FD LK++
Sbjct: 133 DIEDLMKDSDKNNDGRIDFDEFLKMM 158
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L+ F + D + DG I ++L G +EED I ++ +D N DG +++
Sbjct: 95 EEELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEED---IEDLMKDSDKNNDGRIDF 151
Query: 74 DEFERVLD 81
DEF ++++
Sbjct: 152 DEFLKMME 159
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF D + GKI+ +L G+ +E + + +I+ A+ N +G + +
Sbjct: 10 AEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAE---LQDLIAEAENNNNGQLNFT 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + M + FK+ D+DGDG +S +L+ M G TD+
Sbjct: 67 EFCGIMAKQMRETDTEEE-------MREAFKIFDRDGDGFISPAELRFVMINLGEKVTDE 119
Query: 135 DIKAMIR 141
+I MIR
Sbjct: 120 EIDEMIR 126
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLR--AFYAGRRASEEDGDVIGTMISVAD 64
A + R+ ++ AF + D D DG IS +LR G + ++E+ I MI AD
Sbjct: 73 AKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEE---IDEMIREAD 129
Query: 65 FNKDGYVEYDEF 76
F+ DG + Y+EF
Sbjct: 130 FDGDGMINYEEF 141
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
D F DK+G G+++ +L + M G T+ +++ +I + N ++F I+A
Sbjct: 14 DAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMA 73
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS +L G+ ++E+ D I I D + G ++++
Sbjct: 17 AEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAI---IEEVDEDGSGTIDFE 73
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF L + L E +F++ D++ DG + +L +G TD+
Sbjct: 74 EF---LVMMVRQMKEDAKGKSEEELAE-LFRIFDRNADGYIDAEELAEIFRASGEHVTDE 129
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
+I+++++ G + + + FD LK++
Sbjct: 130 EIESLMKDGDKNNDGRIDFDEFLKMM 155
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L + +G ++E+ I +++ D N DG +++
Sbjct: 92 EEELAELFRIFDRNADGYIDAEELAEIFRASGEHVTDEE---IESLMKDGDKNNDGRIDF 148
Query: 74 DEFERVLD 81
DEF ++++
Sbjct: 149 DEFLKMME 156
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS +L G+ ++E+ D I I D + G ++++
Sbjct: 17 AEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAI---IEEVDEDGSGTIDFE 73
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF L + L E F++ D++ DG + +L +G TD+
Sbjct: 74 EF---LVMMVRQMKEDAKGKSEEELAE-CFRIFDRNADGYIDAEELAEIFRASGEHVTDE 129
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
+I+++++ G + + + FD LK++
Sbjct: 130 EIESLMKDGDKNNDGRIDFDEFLKMM 155
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L + +G ++E+ I +++ D N DG +++
Sbjct: 92 EEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEE---IESLMKDGDKNNDGRIDF 148
Query: 74 DEFERVLD 81
DEF ++++
Sbjct: 149 DEFLKMME 156
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ L G+ +E + + MI+ + +G +++
Sbjct: 311 AEFKEAFSLFDKDGDGGITTKQLGTVMRSLGQNPTEAE---LQDMINEVGADGNGTIDFP 367
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
+F ++ + + + F+V KDG+G +S L+ M G TD+
Sbjct: 368 QFLTMMARKMKDTDSEEE-------IREAFRVFGKDGNGYISAAQLRHVMTNLGEKLTDE 420
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKILA 161
++ MIR G D + V+++ ++++
Sbjct: 421 EVDEMIREAGIDGDGQVNYEQFVQMMT 447
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
RL+ AF D+D GKIS +L + S+ D + +++S D N DG V++DEF+
Sbjct: 419 RLERAFRXFDSDNSGKISSTELATIFG---VSDVDSETWKSVLSEVDKNNDGEVDFDEFQ 475
Query: 78 RVL 80
+ L
Sbjct: 476 QXL 478
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 24/167 (14%)
Query: 5 GTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA------GRRASEEDGDVIG- 57
G+ L +D K L F D + DG++ R +L Y G+ AS D +
Sbjct: 325 GSKLTSQDETK--ELTAIFHKXDKNGDGQLDRAELIEGYKELXRXKGQDASXLDASAVEH 382
Query: 58 ---TMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGR 114
++ DF+K+GY+EY EF V +E F+ D D G+
Sbjct: 383 EVDQVLDAVDFDKNGYIEYSEFVTV--------AXDRKTLLSRERLERAFRXFDSDNSGK 434
Query: 115 LSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDG-VSFDGLLKIL 160
+S +L + G + D + + NDG V FD + L
Sbjct: 435 ISSTELATIF---GVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQXL 478
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ + K AF + D D +G IS +L S + +V M + D + + +E+
Sbjct: 8 QIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEI-DVDGNHQIEFS 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + L+E FKV DK+GDG +S +LK + G TD
Sbjct: 67 EFLALMSRQLKSNDSEQE------LLE-AFKVFDKNGDGLISAAELKHVLTSIGEKLTDA 119
Query: 135 DIK 137
+++
Sbjct: 120 ELE 122
>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 C-Terminal Domain
Length = 70
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKDGYVEY 73
LK AF V D D++G IS +LR G + ++E+ + MI AD + DG V Y
Sbjct: 3 EEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEE---VEQMIKEADLDGDGQVNY 59
Query: 74 DEFERVL 80
+EF +++
Sbjct: 60 EEFVKMM 66
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+++ FKV DKD +G +S +L+ M G TD++++ MI+ D + V+++ +K+
Sbjct: 6 LKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKM 65
Query: 160 L 160
+
Sbjct: 66 M 66
>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean
Calmodulin Isoform 4 Fused With The Calmodulin-Binding
Domain Of Ntmkp1
Length = 92
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKDG 69
D LK AF V D D++G IS +LR G + ++E+ + MI AD + DG
Sbjct: 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEE---VEQMIKEADLDGDG 60
Query: 70 YVEYDEFERVL 80
V Y+EF +++
Sbjct: 61 QVNYEEFVKMM 71
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+++ FKV DKD +G +S +L+ M G TD++++ MI+ D + V+++ +K+
Sbjct: 11 LKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKM 70
Query: 160 L 160
+
Sbjct: 71 M 71
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAG--RRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
L+ AF D D DG I+ D+LR AG + +E+ D MI AD ++DG V Y+EF
Sbjct: 8 LQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELD---AMIREADVDQDGRVNYEEF 64
Query: 77 ERVLDLE 83
R+L E
Sbjct: 65 ARMLAQE 71
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
++ F+ D+DGDG ++ +L+ M G +++ AMIR D++ V+++ ++
Sbjct: 8 LQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARM 67
Query: 160 LA 161
LA
Sbjct: 68 LA 69
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS +L G+ ++E+ D I I D + G ++++
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFE 76
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + D F++ DK+ DG + +L + G T++
Sbjct: 77 EFLVMMVRQMKEDAKGKSEEE----LADCFRIFDKNADGFIDIEELGEILRATGEHVTEE 132
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
DI+ +++ + + + FD LK++
Sbjct: 133 DIEDLMKDSDKNNDGRIDFDEFLKMM 158
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L G +EED I ++ +D N DG +++
Sbjct: 95 EEELADCFRIFDKNADGFIDIEELGEILRATGEHVTEED---IEDLMKDSDKNNDGRIDF 151
Query: 74 DEFERVLD 81
DEF ++++
Sbjct: 152 DEFLKMME 159
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 23 FDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDL 82
F +DA+ DG +S ++++AF + +R + + ++ + D + +G ++ EF +
Sbjct: 6 FKQLDANGDGSVSYEEVKAFVSSKRPIKNE-QLLQLIFKAIDIDGNGEIDLAEFTK---- 60
Query: 83 EYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDI 136
+ ++ ++K+MD DGDG+L+ ++ ++ G+ D I
Sbjct: 61 -FAAAVKEQDLSDEKVGLKILYKLMDADGDGKLTKEEVTTFFKKFGYEKVVDQI 113
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
LK + ++DAD DGK++++++ F+ ++ E + I AD N DGY+ +EF
Sbjct: 77 LKILYKLMDADGDGKLTKEEVTTFF--KKFGYEK---VVDQIMKADANGDGYITLEEF 129
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 99 LMEDVFKVMDKDGDGRLSHGDLKSYMNC 126
+ E +FK +D +GDG +S+ ++K++++
Sbjct: 1 MAEALFKQLDANGDGSVSYEEVKAFVSS 28
>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin
C-Domain E104dE140D MUTANT
Length = 72
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F+V DKDG+G +S DL+ M G TD+++ MIR D + V+++ ++++
Sbjct: 11 EAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEDFVQMMT 70
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKDG 69
D ++ AF V D D +G IS DLR G + ++E+ D MI AD + DG
Sbjct: 2 DTDSEEEIREAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVD---EMIREADIDGDG 58
Query: 70 YVEYDEFERVL 80
V Y++F +++
Sbjct: 59 QVNYEDFVQMM 69
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDV-IDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVA 63
A+ + + K AFD+ + DG IS +L G+ + E+ + MI
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEE---LQEMIDEV 64
Query: 64 DFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSY 123
D + G V++DEF ++ + D+F++ DK+ DG + +LK
Sbjct: 65 DEDGSGTVDFDEFLVMM----VRSMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIM 120
Query: 124 MNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ G T+DDI+ +++ G + + + +D L+ +
Sbjct: 121 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDV-IDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVA 63
A+ + + K AFD+ + DG IS +L G+ + E+ + MI
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEE---LQEMIDEV 64
Query: 64 DFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSY 123
D + G V++DEF ++ + D+F++ DK+ DG + +LK
Sbjct: 65 DEDGSGTVDFDEFLVMM----VRSMKDDSKGKSEEELSDLFRMWDKNADGYIDLDELKIM 120
Query: 124 MNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ G T+DDI+ +++ G + + + +D L+ +
Sbjct: 121 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDV-IDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVA 63
A+ + + K AFD+ + DG IS +L G+ + E+ + MI
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEE---LQEMIDEV 64
Query: 64 DFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSY 123
D + G V++DEF ++ + D+F++ DK+ DG + +LK
Sbjct: 65 DEDGSGTVDFDEFLVMM----VRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIM 120
Query: 124 MNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ G T+DDI+ +++ G + + + +D L+ +
Sbjct: 121 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDV-IDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVA 63
A+ + + K AFD+ + DG IS +L G+ + E+ + MI
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEE---LQEMIDEV 64
Query: 64 DFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSY 123
D + G V++DEF ++ + D+F++ DK+ DG + +LK
Sbjct: 65 DEDGSGTVDFDEFLVMM----VRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIM 120
Query: 124 MNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ G T+DDI+ +++ G + + + +D L+ +
Sbjct: 121 LQATGETITEDDIEELMKDGDKNNDGRIDYDEWLEFM 157
>pdb|1ZOT|B Chain B, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp
Length = 69
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F+V DKDG+G +S +L+ M G TD+++ MIR D + V+++ ++++
Sbjct: 9 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 68
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKDGYVEY 73
++ AF V D D +G IS +LR G + ++E+ D MI AD + DG V Y
Sbjct: 4 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIREADIDGDGQVNY 60
Query: 74 DEFERVL 80
+EF +++
Sbjct: 61 EEFVQMM 67
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDV-IDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVA 63
A+ + + K AFD+ + DG IS +L G+ + E+ + MI
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEE---LQEMIDEV 64
Query: 64 DFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSY 123
D + G V++DEF ++ + D+F++ DK+ DG + +LK
Sbjct: 65 DEDGSGTVDFDEFLVMM----VRSMKDDSKGKSEEELSDLFRMXDKNADGYIDLDELKIM 120
Query: 124 MNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ G T+DDI+ +++ G + + + +D L+ +
Sbjct: 121 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin Bound
To The Iq Motif Of Nav1.2
Length = 73
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ FKV D+DG+G +S +L+ M G TDD++ MIR D + ++++ ++++
Sbjct: 12 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV 71
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKD 68
++ L AF V D D +G IS +LR G + ++ D + MI AD + D
Sbjct: 2 KEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTD---DEVDEMIREADIDGD 58
Query: 69 GYVEYDEFERVL 80
G++ Y+EF R++
Sbjct: 59 GHINYEEFVRMM 70
>pdb|1F71|A Chain A, Refined Solution Structure Of Calmodulin C-Terminal Domain
pdb|1J7P|A Chain A, Solution Structure Of Calcium Calmodulin C-Terminal Domain
pdb|2K3S|B Chain B, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
pdb|2KUH|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam C-Terminal Domain
pdb|2LLQ|A Chain A, Solution Nmr-Derived Structure Of Calmodulin C-Lobe Bound
With Er Alpha Peptide
Length = 67
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F+V DKDG+G +S +L+ M G TD+++ MIR D + V+++ ++++
Sbjct: 6 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 65
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKDGYVEY 73
++ AF V D D +G IS +LR G + ++E+ D MI AD + DG V Y
Sbjct: 1 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIREADIDGDGQVNY 57
Query: 74 DEFERVL 80
+EF +++
Sbjct: 58 EEFVQMM 64
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS +L G+ ++E+ D I I D + G ++++
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFE 76
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F++ DK+ DG + +L + G T++
Sbjct: 77 EFLVMMVRQMKEDAKGKSEEE----LANCFRIFDKNADGFIDIEELGEILRATGEHVTEE 132
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
DI+ +++ + + + FD LK++
Sbjct: 133 DIEDLMKDSDKNNDGRIDFDEFLKMM 158
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L G +EED I ++ +D N DG +++
Sbjct: 95 EEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEED---IEDLMKDSDKNNDGRIDF 151
Query: 74 DEFERVLD 81
DEF ++++
Sbjct: 152 DEFLKMME 159
>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From Calmodulin
To 1.7 A Resolution
pdb|2LQP|A Chain A, Nmr Solution Structure Of The Ca2+-Calmodulin C-Terminal
Domain In A Complex With A Peptide (Nscate) From The
L-Type Voltage-Gated Calcium Channel Alpha1c Subunit
Length = 71
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F+V DKDG+G +S +L+ M G TD+++ MIR D + V+++ ++++
Sbjct: 10 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 69
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKDG 69
D ++ AF V D D +G IS +LR G + ++E+ D MI AD + DG
Sbjct: 1 DTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIREADIDGDG 57
Query: 70 YVEYDEFERVL 80
V Y+EF +++
Sbjct: 58 QVNYEEFVQMM 68
>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin Carboxy-Terminal
Domain
pdb|1CMG|A Chain A, Nmr Solution Structure Of Calcium-Loaded Calmodulin
Carboxy- Terminal Domain
Length = 73
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F+V DKDG+G +S +L+ M G TD+++ MIR D + V+++ ++++
Sbjct: 12 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 71
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKD 68
+D ++ AF V D D +G IS +LR G + ++E+ D MI AD + D
Sbjct: 2 KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIREADIDGD 58
Query: 69 GYVEYDEFERVL 80
G V Y+EF +++
Sbjct: 59 GQVNYEEFVQMM 70
>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin And 1mm
Calcium Chloride
pdb|1YRT|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin
Length = 74
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F+V DKDG+G +S +L+ M G TD+++ MIR D + V+++ ++++
Sbjct: 13 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 72
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 9 RPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFN 66
+ +D ++ AF V D D +G IS +LR G + ++E+ D MI AD +
Sbjct: 1 KMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIREADID 57
Query: 67 KDGYVEYDEFERVL 80
DG V Y+EF +++
Sbjct: 58 GDGQVNYEEFVQMM 71
>pdb|2COL|B Chain B, Crystal Structure Analysis Of CyaaC-Cam With Pyrophosphate
Length = 67
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ F+V DKDG+G +S +L+ M G TD+++ MIR D + V+++ ++++
Sbjct: 9 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 67
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKDGYVEY 73
++ AF V D D +G IS +LR G + ++E+ D MI AD + DG V Y
Sbjct: 4 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIREADIDGDGQVNY 60
Query: 74 DEFERVL 80
+EF +++
Sbjct: 61 EEFVQMM 67
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS +L G+ ++E+ D I I D + G ++++
Sbjct: 17 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFE 73
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F++ DK+ DG + +L + G T++
Sbjct: 74 EFLVMMVRQMKEDAKGKSEEE----LANCFRIFDKNADGFIDIEELGEILRATGEHVTEE 129
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
DI+ +++ + + + FD LK++
Sbjct: 130 DIEDLMKDSDKNNDGRIDFDEFLKMM 155
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L G +EED I ++ +D N DG +++
Sbjct: 92 EEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEED---IEDLMKDSDKNNDGRIDF 148
Query: 74 DEFERVLD 81
DEF ++++
Sbjct: 149 DEFLKMME 156
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDV-IDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVA 63
A+ + + K AFD+ + DG IS +L G+ + E+ + MI
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEE---LQEMIDEV 64
Query: 64 DFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSY 123
D + G V++DEF ++ + D+F++ DK+ DG + +LK
Sbjct: 65 DEDGSGTVDFDEFLVMM----VRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIM 120
Query: 124 MNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ G T+DDI+ +++ G + + + +D L+ +
Sbjct: 121 LQATGETITEDDIEELMKDGDKNNDGRIDYDEXLEFM 157
>pdb|2RO9|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 C-Terminal Domain
Length = 69
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKDGYVEY 73
LK AF V D D++G IS +LR G + ++E+ D MI AD + DG + Y
Sbjct: 3 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVD---EMIREADVDGDGQINY 59
Query: 74 DEFERVL 80
+EF +V+
Sbjct: 60 EEFVKVM 66
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+++ F+V DKD +G +S +L+ M G TD+++ MIR D + ++++ +K+
Sbjct: 6 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 65
Query: 160 L 160
+
Sbjct: 66 M 66
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 21/156 (13%)
Query: 18 RLKPAFDVIDADRDGKISRDDL-RAFYAGRRASEEDG------------DVIGTMISVAD 64
+L F +D + DG + RD+L R ++ R D D I +++ + D
Sbjct: 332 QLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLD 391
Query: 65 FNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYM 124
+ G +EY EF ME FK+ DKDG G++S +L
Sbjct: 392 MDGSGSIEYSEF--------IASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLF 443
Query: 125 NCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ A + ++++++I +++ V F+ +++L
Sbjct: 444 SQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEML 479
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 7 ALRPRDAAKPSRLKPAFDV-IDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVA 63
A+ + + K AFD+ + DG IS +L G+ + E+ + MI
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEE---LQEMIDEV 64
Query: 64 DFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSY 123
D + G V++DEF ++ + D+F++ DK+ DG + +LK
Sbjct: 65 DEDGSGTVDFDEFLVMM----VRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIM 120
Query: 124 MNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ G T+DDI+ +++ G + + + +D L+ +
Sbjct: 121 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant
Length = 94
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F+V DKDG+G +S +L+ M G TD+++ MIR D + V+++ ++++
Sbjct: 33 EAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 92
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMISVADFNKD 68
+D ++ AF V D D +G IS +LR G + ++E+ D MI AD + D
Sbjct: 23 KDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVD---EMIREADIDGD 79
Query: 69 GYVEYDEFERVL 80
G V Y+EF +++
Sbjct: 80 GQVNYEEFVQMM 91
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYV 71
D + +RL+ F DA+R G++ R++ RA R D + + + D ++DG +
Sbjct: 22 DGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRL---DADRDGAI 78
Query: 72 EYDEFER 78
+ EF R
Sbjct: 79 TFQEFAR 85
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 32 GKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYXXXXXXX 91
G+++ + + F+ + S + M DFNKDGY+++ +EY
Sbjct: 30 GQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDF--------MEYVAALSLV 81
Query: 92 XXXXXXXLMEDVFKVMDKDGDGRLSHGDL 120
+ FK+ D DG+G + G+L
Sbjct: 82 LKGKVDQKLRWYFKLYDVDGNGCIDRGEL 110
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS +L G+ ++E+ D I I D + G ++++
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFE 76
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF ++ + + + F++ DK+ DG + +L + G ++
Sbjct: 77 EFLVMMVRQMKEDAKGKSEEE----LANCFRIFDKNADGFIDIEELGEILRATGEHVIEE 132
Query: 135 DIKAMIRLGGGDENDGVSFDGLLKIL 160
DI+ +++ + + + FD LK++
Sbjct: 133 DIEDLMKDSDKNNDGRIDFDEFLKMM 158
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L G EED I ++ +D N DG +++
Sbjct: 95 EEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEED---IEDLMKDSDKNNDGRIDF 151
Query: 74 DEFERVLD 81
DEF ++++
Sbjct: 152 DEFLKMME 159
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 13 AAKP--SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGY 70
AA P S L F +D DR G IS +L+ + + + + ++IS+ D
Sbjct: 1 AALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAG 60
Query: 71 VEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFA 130
V + EF V +Y ++VF+ D+D G + +LK ++ AG+
Sbjct: 61 VNFSEFTGVW--KYITD------------WQNVFRTYDRDNSGMIDKNELKQALSGAGYR 106
Query: 131 ATDDDIKAMIRLGGGDENDGVSFDGLLK 158
+D +IR ++FD ++
Sbjct: 107 LSDQFHDILIRKFDRQGRGQIAFDDFIQ 134
>pdb|2HQ8|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
pdb|2HQ8|B Chain B, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
Length = 186
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 23 FDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
+D ID D+DG +S + +AF D I T + DFNK+G + DEF
Sbjct: 108 YDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAI-TCFNTLDFNKNGQISRDEF 160
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER 78
K AF VID + DG I +DDLR +A + + MI A G + + F
Sbjct: 9 FKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTVFLT 64
Query: 79 VLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKA 138
+ ++ FKV+D DG G + L+ + G T ++IK
Sbjct: 65 MF-------GEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKN 117
Query: 139 M 139
M
Sbjct: 118 M 118
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER 78
K AF VID + DG I +DDLR +A + + MI A G + + F
Sbjct: 27 FKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTVFLT 82
Query: 79 VLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKA 138
+ ++ FKV+D DG G + L+ + G T ++IK
Sbjct: 83 MF-------GEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKN 135
Query: 139 M 139
M
Sbjct: 136 M 136
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 3 PTGT---ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIG 57
PT T A R L F +D D G IS +L A AG S +
Sbjct: 10 PTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTE--- 66
Query: 58 TMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSH 117
++ + D N G + +DEF+ DL + M + F+ D GDGRL
Sbjct: 67 KLLHMYDKNHSGEITFDEFK---DLHHFILS-----------MREGFRKRDSSGDGRLDS 112
Query: 118 GDLKSYMNCAGFAATDDDIKAMIR 141
++++ + +G+ ++ +A++R
Sbjct: 113 NEVRAALLSSGYQVSEQTFQALMR 136
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double
Mutant Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
++ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++
Sbjct: 13 KEAFSLYDKDGDGTITTKELGTVMRSLGLNPTEAELQDMINEVDADGNGTIDFPEFLTMM 72
Query: 161 A 161
A
Sbjct: 73 A 73
>pdb|2HPS|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri
Length = 186
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 23 FDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
+D ID D+DG +S + +AF D I T + DFNK+G + DEF
Sbjct: 108 YDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAI-TCFNTLDFNKNGQISRDEF 160
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Query: 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYV 71
D + K AF VID +RDG I +DDLR +A + + MI A G +
Sbjct: 7 DQTQIQDFKEAFTVIDQNRDGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPI 62
Query: 72 EYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAA 131
+ F + ++ FKV+D DG G + L+ +
Sbjct: 63 NFTVFLTMF-------GEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTQCDRF 115
Query: 132 TDDDIKAM 139
T ++IK M
Sbjct: 116 TPEEIKNM 123
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 23 FDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDL 82
F ID + DG +S ++++AF + +RA + + ++ + D + +G ++ +EF +
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNE-QLLQLIFKSIDADGNGEIDQNEFAK---- 60
Query: 83 EYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDI 136
+ ++ ++K+MD DGDG+L+ ++ S+ G + +
Sbjct: 61 -FYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQV 113
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
LK + ++D D DGK++++++ +F+ + + + AD N DGY+ +EF
Sbjct: 77 LKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEK-----VAEQVMKADANGDGYITLEEF 129
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 23 FDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDL 82
F ID + DG +S ++++AF + +RA + + ++ + D + +G ++ +EF +
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNE-QLLQLIFKSIDADGNGEIDQNEFAK---- 60
Query: 83 EYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDI 136
+ ++ ++K+MD DGDG+L+ ++ S+ G + +
Sbjct: 61 -FYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQV 113
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
LK + ++D D DGK++++++ +F+ + + + AD N DGY+ +EF
Sbjct: 77 LKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEK-----VAEQVMKADANGDGYITLEEF 129
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 22 AFDVIDADRDGKISRDDLRAFYAGRRASE--EDGDVIGTMISVADFNKDGYVEYDEFERV 79
F+V DAD++G I D + F + E D + + D + +G + YDE R+
Sbjct: 68 VFNVFDADKNGYI---DFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRI 124
Query: 80 LDLEYXXXXXXXXXXXXXXLMED----VFKVMDKDGDGRLS 116
+D Y E +F +MDK+ DG+L+
Sbjct: 125 VDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLT 165
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 14 AKPSRLKPAFDVIDADRDGKISRDD----LRAFYAGRRASEEDGDVIGTMISVADFNKDG 69
++ ++L AF + D DRDGKISR + LR + E+ ++ + AD + DG
Sbjct: 111 SRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDG 170
Query: 70 YVEYDEFERVLD 81
V + EF + L+
Sbjct: 171 AVSFVEFTKSLE 182
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 30/175 (17%)
Query: 1 MCPTGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIG--- 57
M G+ L + K L F +D + DG++ R +L Y R+ + GD +
Sbjct: 26 MLFMGSKLTTLEETKE--LTQIFRQLDNNGDGQLDRKELIEGY--RKLMQWKGDTVSDLD 81
Query: 58 ---------TMISVADFNKDGYVEYDEFERV-LDLEYXXXXXXXXXXXXXXLMEDVFKVM 107
++ DF+++GY+EY EF V +D + F+
Sbjct: 82 SSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLA---------AFQQF 132
Query: 108 DKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDG-VSFDGLLKILA 161
D DG G++++ +L G DD+ + NDG V F+ ++++
Sbjct: 133 DSDGSGKITNEELGRLF---GVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQ 184
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + I+ D + +G +++
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAE---LQDXINEVDADGNGTIDFP 67
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF + + F+V DKDG+G +S +L+ G TD+
Sbjct: 68 EF-------LTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDE 120
Query: 135 DIKAMIR 141
++ IR
Sbjct: 121 EVDQXIR 127
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D I
Sbjct: 71 TXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVD---QXIR 127
Query: 62 VADFNKDGYVEYDEF 76
AD + DG V Y+EF
Sbjct: 128 EADIDGDGQVNYEEF 142
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
++ F + DKDGDG ++ +L + G T+ +++ I D N + F L
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLTX 72
Query: 160 LA 161
A
Sbjct: 73 XA 74
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+ D+F++ DK+ DG + +LK + G T+DDI+ +++ G + + + +D L+
Sbjct: 7 LSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 66
Query: 160 L 160
+
Sbjct: 67 M 67
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L+ G +E+D I ++ D N DG ++Y
Sbjct: 4 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDD---IEELMKDGDKNNDGRIDY 60
Query: 74 DEF 76
DEF
Sbjct: 61 DEF 63
>pdb|3IFK|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
pdb|3IFK|B Chain B, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
Length = 90
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 14 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 73
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + I+ D + +G +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAE---LQDXINEVDADGNGTIDFP 66
Query: 75 EFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDD 134
EF + + F+V DKDG+G +S +L+ G TD+
Sbjct: 67 EF-------LTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDE 119
Query: 135 DIKAMIR 141
++ IR
Sbjct: 120 EVDEXIR 126
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A + +D ++ AF V D D +G IS +LR G + ++E+ D I
Sbjct: 70 TXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVD---EXIR 126
Query: 62 VADFNKDGYVEYDEF 76
AD + DG V Y+EF
Sbjct: 127 EADIDGDGQVNYEEF 141
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
++ F + DKDGDG ++ +L + G T+ +++ I D N + F L
Sbjct: 12 FKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLTX 71
Query: 160 LA 161
A
Sbjct: 72 XA 73
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 12/148 (8%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRAS--EEDGDVIGTMISVADFNKDGYVE 72
+ ++ AFD+ DAD G I D++ RA E + I MIS D G +
Sbjct: 4 QKQEIREAFDLFDADGTGTI---DVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMN 60
Query: 73 YDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAAT 132
+ +F V+ + FK+ D D G++S +LK G T
Sbjct: 61 FGDFLTVMTQKMSEKDTKEEILK-------AFKLFDDDETGKISFKNLKRVAKELGENLT 113
Query: 133 DDDIKAMIRLGGGDENDGVSFDGLLKIL 160
D++++ MI D + VS L+I+
Sbjct: 114 DEELQEMIDEADRDGDGEVSEQEFLRIM 141
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
Length = 208
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 14 AKPSRLKPAFDVIDADRDGKISRDD----LRAFYAGRRASEEDGDVIGTMISVADFNKDG 69
++ ++L AF + D D+D KISRD+ LR + E+ G + I AD + D
Sbjct: 110 SRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDS 169
Query: 70 YVEYDEFERVLD 81
+ + EF +VL+
Sbjct: 170 AISFTEFVKVLE 181
>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 195
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 14 AKPSRLKPAFDVIDADRDGKISRDD----LRAFYAGRRASEEDGDVIGTMISVADFNKDG 69
++ ++L AF + D D+D KISRD+ LR + E+ G + I AD + D
Sbjct: 110 SRSNKLHFAFRLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDS 169
Query: 70 YVEYDEFERVLD 81
+ + EF +VL+
Sbjct: 170 AISFTEFVKVLE 181
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+ D+F++ DK+ DG + +LK + G T+DDI+ +++ G + + + +D L+
Sbjct: 17 LSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 76
Query: 160 L 160
+
Sbjct: 77 M 77
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L+ G +E+D I ++ D N DG ++Y
Sbjct: 14 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDD---IEELMKDGDKNNDGRIDY 70
Query: 74 DEF 76
DEF
Sbjct: 71 DEF 73
>pdb|3B32|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-75
Length = 75
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 14 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 73
>pdb|1AK8|A Chain A, Nmr Solution Structure Of Cerium-Loaded Calmodulin Amino-
Terminal Domain (Ce2-Tr1c), 23 Structures
Length = 76
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 74
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+ D+F++ DK+ DG + +LK + G T+DDI+ +++ G + + + +D L+
Sbjct: 12 LSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 71
Query: 160 L 160
+
Sbjct: 72 M 72
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L+ G +E+D I ++ D N DG ++Y
Sbjct: 9 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDD---IEELMKDGDKNNDGRIDY 65
Query: 74 DEF 76
DEF
Sbjct: 66 DEF 68
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+ D+F++ DK+ DG + +LK + G T+DDI+ +++ G + + + +D L+
Sbjct: 9 LSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 68
Query: 160 L 160
+
Sbjct: 69 M 69
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L+ G +E+D I ++ D N DG ++Y
Sbjct: 6 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDD---IEELMKDGDKNNDGRIDY 62
Query: 74 DEF 76
DEF
Sbjct: 63 DEF 65
>pdb|1F70|A Chain A, Refined Solution Structure Of Calmodulin N-Terminal Domain
pdb|2PQ3|A Chain A, N-Terminal Calmodulin Zn-Trapped Intermediate
pdb|2KUG|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam N-Terminal Domain
Length = 76
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 14 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 73
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASE-------EDGDVIGTMISVADFNKDGY 70
L F ID + DG++ R +L Y+ E + + ++ ADF+++GY
Sbjct: 64 ELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGY 123
Query: 71 VEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKS 122
++Y EF V +E F+ D+DG+G++S +L S
Sbjct: 124 IDYSEFVTV--------AMDRKSLLSKDKLESAFQKFDQDGNGKISVDELAS 167
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
+L+ AF D D +GKIS D+L + + + MIS D N DG V+++EF
Sbjct: 144 KLESAFQKFDQDGNGKISVDELASVFGLDHL---ESKTWKEMISGIDSNNDGDVDFEEFC 200
Query: 78 RVL 80
+++
Sbjct: 201 KMI 203
>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|B Chain B, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 151
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 104 FKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLK-ILAV 162
F+V DK+G+G++ +L+ + G T+++++ ++ G D N ++++ LK IL+V
Sbjct: 93 FRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLA-GHEDSNGCINYEAFLKHILSV 151
>pdb|3UCT|A Chain A, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCT|B Chain B, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCW|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|B Chain B, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|C Chain C, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|D Chain D, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCY|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
Length = 79
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
++ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++
Sbjct: 13 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM 72
Query: 161 A 161
A
Sbjct: 73 A 73
>pdb|1J7O|A Chain A, Solution Structure Of Calcium-calmodulin N-terminal Domain
Length = 76
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++A
Sbjct: 14 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 73
>pdb|2LLO|A Chain A, Solution Nmr-Derived Structure Of Calmodulin N-Lobe Bound
With Er Alpha Peptide
Length = 80
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
++ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++
Sbjct: 13 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM 72
Query: 161 A 161
A
Sbjct: 73 A 73
>pdb|2LQC|A Chain A, Nmr Solution Structure Of A Ca2+-Calmodulin With A Binding
Motif (Nscate) Peptide From The N-Terminal Cytoplasmic
Domain Of The L-Type Voltage-Cated Calcium Channel
Alpha1c Subunit
Length = 77
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
++ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++
Sbjct: 13 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM 72
Query: 161 A 161
A
Sbjct: 73 A 73
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 1 MCPTGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIG--- 57
M G+ L + K L F +D + DG++ R +L Y R+ + GD +
Sbjct: 300 MLFMGSKLTTLEETK--ELTQIFRQLDNNGDGQLDRKELIEGY--RKLMQWKGDTVSDLD 355
Query: 58 ---------TMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMD 108
++ DF+++GY+EY EF V + F+ D
Sbjct: 356 SSQIEAEVDHILQSVDFDRNGYIEYSEFVTVC--------MDKQLLLSRERLLAAFQQFD 407
Query: 109 KDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDG-VSFDGLLKIL 160
DG G++++ +L G DD+ + NDG V F+ ++++
Sbjct: 408 SDGSGKITNEELGRLF---GVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMM 457
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+ D+F++ DK+ DG + +LK + G T+DDI+ +++ G + + + +D L+
Sbjct: 8 LSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 67
Query: 160 L 160
+
Sbjct: 68 M 68
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I D+L+ G +E+D I ++ D N DG ++Y
Sbjct: 5 EEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDD---IEELMKDGDKNNDGRIDY 61
Query: 74 DEF 76
DEF
Sbjct: 62 DEF 64
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER 78
LK F+ IDAD+ G+I+ ++L+A A+ ++ +++ + AD + G ++Y EF
Sbjct: 29 LKEXFNXIDADKSGQITFEELKAGLKRVGANLKESEIL-DLXQAADVDNSGTIDYKEF-- 85
Query: 79 VLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKA 138
+ F DKDG G ++ +L+ C F D I+
Sbjct: 86 ------IAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQ--QACEEFGVEDVRIEE 137
Query: 139 MIR 141
+ R
Sbjct: 138 LXR 140
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 23 FDVIDADRDGKISRDDLRAFYAGRRASE-------EDGDVIGTMISVADFNKDGYVEYDE 75
F ID + DG++ R +L Y+ E + + ++ ADF+++GY++Y E
Sbjct: 352 FRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSE 411
Query: 76 FERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDD 135
F V +E F+ D+DG+G++S +L S +
Sbjct: 412 FVTV--------AMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESK--T 461
Query: 136 IKAMIRLGGGDENDG-VSFDGLLKIL 160
K MI G NDG V F+ K++
Sbjct: 462 WKEMIS-GIDSNNDGDVDFEEFCKMI 486
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
+L+ AF D D +GKIS D+L + + + MIS D N DG V+++EF
Sbjct: 427 KLESAFQKFDQDGNGKISVDELASVFG---LDHLESKTWKEMISGIDSNNDGDVDFEEFC 483
Query: 78 RVLD 81
+++
Sbjct: 484 KMIQ 487
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 22 AFDVIDADRDGKISRDDL-RAFYAGRRA---SEEDGDVIGTMISVADFNKDGYVEYDEFE 77
AF V D D DG+I+ +L Y G + ++ D + + MI D N DG +++ EF
Sbjct: 127 AFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFS 186
Query: 78 RVLDL 82
++ L
Sbjct: 187 EMMKL 191
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
LK + ++D D DGK++++++ +F+ + + + AD N DGY+ +EF
Sbjct: 7 LKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEK-----VAEQVMKADANGDGYITLEEF 59
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 103 VFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDI 136
++K+MD DGDG+L+ ++ S+ G + +
Sbjct: 10 LYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQV 43
>pdb|3DTP|E Chain E, Tarantula Heavy Meromyosin Obtained By Flexible Docking
To Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|F Chain F, Tarantula Heavy Meromyosin Obtained By Flexible Docking
To Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 196
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVI 56
K AF +ID D+DG IS++D+RA + GR +E++ D +
Sbjct: 57 QEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSM 98
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 13 AAKP--SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGY 70
AA P S L F +D DR G IS +L+ + + + + ++IS+ D
Sbjct: 1 AALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAG 60
Query: 71 VEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFA 130
V + EF V +Y ++VF+ D+D G + +LK ++ G+
Sbjct: 61 VNFSEFTGVW--KYITD------------WQNVFRTYDRDNSGMIDKNELKQALSGFGYR 106
Query: 131 ATDDDIKAMIRLGGGDENDGVSFDGLLK 158
+D +IR ++FD ++
Sbjct: 107 LSDQFHDILIRKFDRQGRGQIAFDDFIQ 134
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 22 AFDVIDADRDGKISRDDL-RAFYAGRR---ASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
AF V D D DG+I+ +L + G + +E D + + MI D N DG +++ EF
Sbjct: 130 AFRVFDVDNDGEITTAELAHVLFNGNKRGNITERDVNQVKKMIREVDKNGDGKIDFYEFS 189
Query: 78 RVLDL 82
++ L
Sbjct: 190 EMMKL 194
>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 N-Terminal Domain
Length = 79
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
++ F + DKDGDG ++ +L + M G T+ +++ MI D N + F L ++
Sbjct: 13 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 72
Query: 161 A 161
A
Sbjct: 73 A 73
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 14/142 (9%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
S L F +D DR G IS ++L+ + + + + ++IS+ D V + EF
Sbjct: 26 SFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEF 85
Query: 77 ERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDI 136
V +Y ++VF+ D+D G + +LK ++ G+ +D
Sbjct: 86 TGVW--KYITD------------WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFH 131
Query: 137 KAMIRLGGGDENDGVSFDGLLK 158
+IR ++FD ++
Sbjct: 132 DILIRKFDRQGRGQIAFDDFIQ 153
>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 145
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 13 AAKPSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGY 70
A +++ F + D D DGK+S ++L + G+ + + + I ++ +F+
Sbjct: 1 TASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFD---- 56
Query: 71 VEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFA 130
F+ V Y L D F+ +DK+G+G + +L+ + G A
Sbjct: 57 --LATFKTV----YRKPIKTPTEQSKEML--DAFRALDKEGNGTIQEAELRQLLLNLGDA 108
Query: 131 ATDDDIKAMIR 141
T +++ +++
Sbjct: 109 LTSSEVEELMK 119
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 17 SRLKPAFDVIDADRDGKISRDDL----RAFYAGRRASEEDGDVIGTMISVADFNKDGYVE 72
+ K AF + D D DG I+ +L R+ +E + I+ D + +G +
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVXRSLGCNPTEAE-----LQDXINEVDADGNGTIN 64
Query: 73 YDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAAT 132
+ EF + + F+V DKDG+G +S +L+ G T
Sbjct: 65 FPEF-------LTXXARCXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLT 117
Query: 133 DDDIKAMIRLGGGDENDGVSFDGLLK 158
D+++ IR D + V+++ ++
Sbjct: 118 DEEVDEXIREADIDGDGQVNYEEFVQ 143
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 4 TGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYA--GRRASEEDGDVIGTMIS 61
T A +D ++ AF V D D +G IS +LR G + ++E+ D I
Sbjct: 70 TXXARCXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVD---EXIR 126
Query: 62 VADFNKDGYVEYDEF 76
AD + DG V Y+EF
Sbjct: 127 EADIDGDGQVNYEEF 141
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
++ F + DKDGDG ++ +L + G T+ +++ I D N ++F L
Sbjct: 12 FKEAFSLFDKDGDGTITTKELGTVXRSLGCNPTEAELQDXINEVDADGNGTINFPEFLTX 71
Query: 160 LA 161
A
Sbjct: 72 XA 73
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEY 73
A S L F +D DR G IS +L+ + + + + ++IS+ D V +
Sbjct: 1 ADQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 60
Query: 74 DEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATD 133
EF V +Y ++VF+ D+D G + +LK ++ G+ +D
Sbjct: 61 SEFTGVW--KYITD------------WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSD 106
Query: 134 DDIKAMIRLGGGDENDGVSFDGLLK 158
+IR ++FD ++
Sbjct: 107 QFHDILIRKFDRQGRGQIAFDDFIQ 131
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+ + FKV D+DG+G +S +L + M G+ + +++ +I+ D + V F+ + +
Sbjct: 38 IREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTL 97
Query: 160 L 160
L
Sbjct: 98 L 98
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 19 LKPAFDVIDADRDGKISRDDL----RAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
++ AF V D D +G IS+ +L R+ G +E + +VI I D + DG V+++
Sbjct: 38 IREAFKVFDRDGNGFISKQELGTAMRSL--GYMPNEVELEVI---IQRLDMDGDGQVDFE 92
Query: 75 EFERVL 80
EF +L
Sbjct: 93 EFVTLL 98
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFN 66
+LRP + + L+ AF D D+DG I+ DL + ++I + + N
Sbjct: 18 SLRPEEIEE---LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELI-ELSQQINMN 73
Query: 67 KDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYM-N 125
G+V++D+F ++L + D F+ D +GDG +S +L+ M
Sbjct: 74 LGGHVDFDDF---VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRK 130
Query: 126 CAGFAATDDDIKAMIR 141
G DI+ +IR
Sbjct: 131 LLGHQVGHRDIEEIIR 146
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
R K FD +D + +GKI+ D++ S+ D+ + + + K V + F
Sbjct: 21 RHKHMFDFLDINGNGKITLDEI--------VSKASDDICAKLEATPEQTKRHQVCVEAFF 72
Query: 78 RVLDLEY----------------XXXXXXXXXXXXXXLMED----VFKVMDKDGDGRLSH 117
R +EY L+ + VF + DKDG G ++
Sbjct: 73 RGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITL 132
Query: 118 GDLKSYMNCAGFAATDDDIKAMIR 141
+ K+Y +G + + +D +A R
Sbjct: 133 DEWKAYGKISGISPSQEDCEATFR 156
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
R K FD +D + +GKI+ D++ S+ D+ + + + K V + F
Sbjct: 21 RHKHMFDFLDINGNGKITLDEI--------VSKASDDICAKLEATPEQTKRHQVCVEAFF 72
Query: 78 RVLDLEY----------------XXXXXXXXXXXXXXLMED----VFKVMDKDGDGRLSH 117
R +EY L+ + VF + DKDG G ++
Sbjct: 73 RGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITL 132
Query: 118 GDLKSYMNCAGFAATDDDIKAMIR 141
+ K+Y +G + + +D +A R
Sbjct: 133 DEWKAYGKISGISPSQEDCEATFR 156
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 32.7 bits (73), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
R K FD +D + +GKI+ D++ S+ D+ + + + K V + F
Sbjct: 21 RHKHMFDFLDINGNGKITLDEI--------VSKASDDICAKLEATPEQTKRHQVCVEAFF 72
Query: 78 RVLDLEY----------------XXXXXXXXXXXXXXLMED----VFKVMDKDGDGRLSH 117
R +EY L+ + VF + DKDG G ++
Sbjct: 73 RGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITL 132
Query: 118 GDLKSYMNCAGFAATDDDIKAMIR 141
+ K+Y +G + + +D +A R
Sbjct: 133 DEWKAYGKISGISPSQEDCEATFR 156
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFN 66
+LRP + + L+ AF D D+DG I+ DL + ++I + + N
Sbjct: 4 SLRPEEIEE---LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELI-ELSQQINMN 59
Query: 67 KDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNC 126
G+V++D+F ++L + D F+ D +GDG +S +L+ M
Sbjct: 60 LGGHVDFDDF---VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRA 116
Query: 127 -AGFAATDDDIKAMIR 141
G DI+ +IR
Sbjct: 117 LLGHQVGHRDIEEIIR 132
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFN 66
+LRP + + L+ AF D D+DG I+ DL + ++I + + N
Sbjct: 4 SLRPEEIEE---LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELI-ELSQQINMN 59
Query: 67 KDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYM-N 125
G+V++D+F ++L + D F+ D +GDG +S +L+ M
Sbjct: 60 LGGHVDFDDF---VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRK 116
Query: 126 CAGFAATDDDIKAMIR 141
G DI+ +IR
Sbjct: 117 LLGHQVGHRDIEEIIR 132
>pdb|1SL8|A Chain A, Calcium-Loaded Apo-Aequorin From Aequorea Victoria
Length = 191
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 22/158 (13%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDG-------- 69
R K F+ +D + +G+IS D++ +AS+ + +G A +KD
Sbjct: 17 RHKHMFNFLDVNHNGRISLDEMV-----YKASDIVINNLGATPEQAKRHKDAVEAFFGGA 71
Query: 70 ---------YVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDL 120
+ EY E + L E + +F ++DKD +G +S +
Sbjct: 72 GMKYGVETEWPEYIEGWKRLASEELKRYSKNQITLIRLWGDALFDIIDKDQNGAISLDEW 131
Query: 121 KSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLK 158
K+Y AG + +D + R+ DE+ + D + +
Sbjct: 132 KAYTKSAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
R K FD +D + +GKI+ D++ S+ D+ + + + K V + F
Sbjct: 21 RHKHMFDFLDINGNGKITLDEI--------VSKASDDICAKLEATPEQTKRHQVCVEAFF 72
Query: 78 RVLDLEY----------------XXXXXXXXXXXXXXLMED----VFKVMDKDGDGRLSH 117
R +EY L+ + VF + DKDG G ++
Sbjct: 73 RGCGMEYGKEIAFPQFLDGFKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITL 132
Query: 118 GDLKSYMNCAGFAATDDDIKAMIR 141
+ K+Y +G + + +D +A R
Sbjct: 133 DEWKAYGKISGISPSQEDCEATFR 156
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFE 77
R K FD +D + +GKI+ D++ S+ D+ + + + K V + F
Sbjct: 21 RHKHMFDFLDINGNGKITLDEI--------VSKASDDICAKLEATPEQTKRHQVCVEAFF 72
Query: 78 RVLDLEY----------------XXXXXXXXXXXXXXLMED----VFKVMDKDGDGRLSH 117
R +EY L+ + VF + DKDG G ++
Sbjct: 73 RGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITL 132
Query: 118 GDLKSYMNCAGFAATDDDIKAMIR 141
+ K+Y +G + + +D +A R
Sbjct: 133 DEWKAYGKISGISPSQEDCEATFR 156
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRA--SEEDGDVIGTMISVADFNKDGYVE 72
+ ++ AFD+ D D G I D + RA E + I MI+ D + G ++
Sbjct: 6 QKQEIREAFDLFDTDGSGTI---DAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTID 62
Query: 73 YDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAAT 132
++EF +++ +M+ F++ D D G++S +LK G T
Sbjct: 63 FEEFLQMM------TAKMGERDSREEIMK-AFRLFDDDETGKISFKNLKRVAKELGENMT 115
Query: 133 DDDIKAMI----RLGGGDENDGVSF 153
D++++ MI R G G+ N+ F
Sbjct: 116 DEELQEMIDEADRDGDGEVNEEEFF 140
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + D DG G + +LK M GF ++IK MI D + + F+ L+++
Sbjct: 12 EAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMT 71
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDE 75
S L F +D DR G IS +L+ + + + + ++IS+ D V + E
Sbjct: 2 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 61
Query: 76 FERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDD 135
F V +Y ++VF+ D+D G + +LK ++ G+ +D
Sbjct: 62 FTGVW--KYITD------------WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQF 107
Query: 136 IKAMIRLGGGDENDGVSFDGLLK 158
+IR ++FD ++
Sbjct: 108 HDILIRKFDRQGRGQIAFDDFIQ 130
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDE 75
S L F +D DR G IS +L+ + + + + ++IS+ D V + E
Sbjct: 24 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 83
Query: 76 FERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDD 135
F V +Y ++VF+ D+D G + +LK ++ G+ +D
Sbjct: 84 FTGVW--KYITD------------WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQF 129
Query: 136 IKAMIRLGGGDENDGVSFDGLLK 158
+IR ++FD ++
Sbjct: 130 HDILIRKFDRQGRGQIAFDDFIQ 152
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human N60d
Calmodulin Refined With Paramagnetism Based Strategy
Length = 79
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
++ F + DKDGDG ++ +L + M G T+ +++ MI D + + F L ++
Sbjct: 13 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMM 72
Query: 161 A 161
A
Sbjct: 73 A 73
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AF + D D DG I+ +L G+ +E + + MI+ D + DG +++
Sbjct: 10 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTIDFP 66
Query: 75 EF 76
EF
Sbjct: 67 EF 68
>pdb|3TZ1|A Chain A, Crystal Structure Of The Ca2+-saturated C-terminal
Domain Of Akazara Scallop Troponin C In Complex With A
Troponin I Fragment
Length = 74
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
LK AF V+D ++ G I D LR + E D I MI+ D + G V+Y+EF
Sbjct: 8 ELKEAFRVLDKEKKGVIKVDVLR-WILKSLGDELTEDEIENMIAETDTDGSGTVDYEEF 65
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + + T+++++ MI D N + FD L ++A
Sbjct: 14 EAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSLMA 73
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAG--RRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
K AF + D D DG I+ ++L + +EE+ + MIS D + +G +E+DEF
Sbjct: 12 FKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEE---LQDMISEVDADGNGTIEFDEF 68
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + DKDGDG ++ +L + + T+++++ MI D N + FD L ++A
Sbjct: 14 EAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSLMA 73
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAG--RRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
K AF + D D DG I+ ++L + +EE+ + MIS D + +G +E+DEF
Sbjct: 12 FKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEE---LQDMISEVDADGNGTIEFDEF 68
>pdb|3J04|B Chain B, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|E Chain E, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 143
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 12/149 (8%)
Query: 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYV 71
D ++ K AF++ID +RDG I ++DL A + D + G M G +
Sbjct: 2 DQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP-----GPI 56
Query: 72 EYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAA 131
+ F + ++ + F D++ G + L+ + G
Sbjct: 57 NFTMFLTMF-------GEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRF 109
Query: 132 TDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
TD+++ M R D+ ++ +IL
Sbjct: 110 TDEEVDEMYREAPIDKKGNFNYVEFTRIL 138
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 22 AFDVIDADRDGKISRDDLRAFYA--------GRRASEEDGDVIGTMISVADFNKDGYVEY 73
AF + D D DG ++R+DL R ++ E +I ++ +D ++DG +
Sbjct: 134 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 193
Query: 74 DEFERVL 80
EF+ V+
Sbjct: 194 SEFQHVI 200
>pdb|1CDP|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
pdb|4CPV|A Chain A, Refined Crystal Structure Of Calcium-Liganded Carp
Parvalbumin 4.25 At 1.5-Angstroms Resolution
pdb|5CPV|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
Length = 109
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRA---SEEDGDVIGTMISVADFNKDGYVEYDE 75
+K AF +ID D+ G I D+L+ F +A + DG+ T + D + DG + DE
Sbjct: 44 VKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGET-KTFLKAGDSDGDGKIGVDE 102
Query: 76 FERVL 80
F ++
Sbjct: 103 FTALV 107
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER 78
LK F +ID D G I+ D+L+ R SE I ++ AD +K G ++Y EF
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLK-RVGSELMESEIKDLMDAADIDKSGTIDYGEF-- 68
Query: 79 VLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKA 138
+ F DKDG G ++ +++ C F D I
Sbjct: 69 ------IAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQA--CKDFGLDDIHIDD 120
Query: 139 MIR 141
MI+
Sbjct: 121 MIK 123
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 22 AFDVIDADRDGKISRDDLRAFYA--------GRRASEEDGDVIGTMISVADFNKDGYVEY 73
AF + D D DG ++R+DL R ++ E +I ++ +D ++DG +
Sbjct: 103 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 162
Query: 74 DEFERVL 80
EF+ V+
Sbjct: 163 SEFQHVI 169
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRAS--EEDGDVIGTMISVADFNKDGYVE 72
+ ++ AFD+ D D G I D + RA E + I MIS D + G ++
Sbjct: 26 QKQEIREAFDLFDTDGSGTI---DAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTID 82
Query: 73 YDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAAT 132
++EF ++ + F++ D D G ++ DL+ G T
Sbjct: 83 FEEFLTMMTAKMGERDSREEILK-------AFRLFDDDNSGTITIKDLRRVAKELGENLT 135
Query: 133 DDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+++++ MI ++++ + D ++I+
Sbjct: 136 EEELQEMIAEADRNDDNEIDEDEFIRIM 163
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ F + D DG G + +LK M GF ++IK MI D + + F+ L ++
Sbjct: 32 EAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMT 91
>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In
Complex With The Cdc31p-Binding Domain From Kar1p
Length = 77
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 21 PAFDVIDADRDGKISRDDLR--AFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER 78
AF + D D G I+ DLR A G +EE+ + MI+ AD N D ++ DEF R
Sbjct: 13 KAFRLFDDDNSGTITIKDLRRVAKELGENLTEEE---LQEMIAEADRNDDNEIDEDEFIR 69
Query: 79 VL 80
++
Sbjct: 70 IM 71
>pdb|3KPX|A Chain A, Crystal Structure Analysis Of Photoprotein Clytin
Length = 198
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIR 141
E VF + DKDG G +S + K+Y +G +D+D + +
Sbjct: 119 EAVFDIFDKDGSGSISLDEWKTYGGISGICPSDEDAEKTFK 159
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 17/130 (13%)
Query: 2 CPTGTALRPRDAAKPSRLKP----------AFDVIDADRDGKISRDD-LRAFYAGRRASE 50
CP+G R + P F V D D +G I ++ + R +
Sbjct: 38 CPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTL 97
Query: 51 EDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLME----DVFKV 106
E+ + + D N DGY+ +DE ++ Y E +FK+
Sbjct: 98 EEK--LSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKL 155
Query: 107 MDKDGDGRLS 116
MDK+ DG ++
Sbjct: 156 MDKNEDGYIT 165
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYA------GRRASEEDGDVIGTM-----ISVADFN 66
+L AF++ D + DG I+ D++ A G + + + M + D N
Sbjct: 100 KLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKN 159
Query: 67 KDGYVEYDEF 76
+DGY+ DEF
Sbjct: 160 EDGYITLDEF 169
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 1 MCPTGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTM 59
M + L +A R+K F ++D + DG I+ D+ R S+ D +IG +
Sbjct: 131 MMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEF------REGSKVDPSIIGAL 183
>pdb|1SCM|B Chain B, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 145
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRA 41
+K AF +ID DRDG +S++D++A
Sbjct: 7 QEMKEAFSMIDVDRDGFVSKEDIKA 31
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
M++ F ++D D DG +S D+K+ G A D ++ AM++ G N
Sbjct: 9 MKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLN 57
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFY----AGRR---ASEEDGDVIGTMISVADFNKDG 69
S+LK F ++D D+ G I D+L+ F +G R ASE T ++ AD + DG
Sbjct: 41 SQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASE-----TKTFLAAADHDGDG 95
Query: 70 YVEYDEFERVLD 81
+ +EF+ ++
Sbjct: 96 KIGAEEFQEMVQ 107
>pdb|1WDC|B Chain B, Scallop Myosin Regulatory Domain
pdb|1B7T|Y Chain Y, Myosin Digested By Papain
pdb|1KK7|Y Chain Y, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|B Chain B, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|B Chain B, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|B Chain B, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Y Chain Y, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility
And Function In The Head
pdb|1S5G|Y Chain Y, Structure Of Scallop Myosin S1 Reveals A Novel
Nucleotide Conformation
pdb|1SR6|B Chain B, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JTD|B Chain B, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
pdb|3JVT|B Chain B, Calcium-Bound Scallop Myosin Regulatory Domain (Lever
Arm) With Reconstituted Complete Light Chains
Length = 156
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRA 41
+K AF +ID DRDG +S++D++A
Sbjct: 18 QEMKEAFSMIDVDRDGFVSKEDIKA 42
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
M++ F ++D D DG +S D+K+ G A D ++ AM++ G N
Sbjct: 20 MKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLN 68
>pdb|2W4T|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 136
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRA 41
+K AF +ID DRDG +S++D++A
Sbjct: 4 QEMKEAFSMIDVDRDGFVSKEDIKA 28
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
M++ F ++D D DG +S D+K+ G A D ++ AM++ G N
Sbjct: 6 MKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLN 54
>pdb|1DFK|Y Chain Y, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Y Chain Y, Scallop Myosin S1 Complexed With
Mgadp:vanadate-Transition State
pdb|1DFL|W Chain W, Scallop Myosin S1 Complexed With
Mgadp:vanadate-Transition State
Length = 139
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRA 41
+K AF +ID DRDG +S++D++A
Sbjct: 7 QEMKEAFSMIDVDRDGFVSKEDIKA 31
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
M++ F ++D D DG +S D+K+ G A D ++ AM++ G N
Sbjct: 9 MKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLN 57
>pdb|1KK8|B Chain B, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 139
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRA 41
+K AF +ID DRDG +S++D++A
Sbjct: 6 QEMKEAFSMIDVDRDGFVSKEDIKA 30
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
M++ F ++D D DG +S D+K+ G A D ++ AM++ G N
Sbjct: 8 MKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLN 56
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium
Regulatory Domain (Cld) From Soybean Calcium-Dependent
Protein Kinase- Alpha (Cdpk)
Length = 87
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
LK F +ID D G I+ D+L+ R SE I ++ AD +K G ++Y EF
Sbjct: 25 LKELFKMIDTDNSGTITFDELKDGLK-RVGSELMESEIKDLMDAADIDKSGTIDYGEF 81
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 7 ALRP-RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGR-----RASEEDGD-VIGTM 59
ALRP A+ + + AF +D DG ++ DDLR Y+GR R+ E D V+
Sbjct: 98 ALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRF 157
Query: 60 ISVADFN-KDGYVEYDEFE 77
+ D + KDG V EF+
Sbjct: 158 LDNFDSSEKDGQVTLAEFQ 176
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor
Domain Of Centrin
Length = 96
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159
+ + F + D DG G + +LK M GF ++IK MI D + + F+ L +
Sbjct: 32 IREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTM 91
Query: 160 LA 161
+
Sbjct: 92 MT 93
>pdb|1EJ3|A Chain A, Crystal Structure Of Aequorin
pdb|1EJ3|B Chain B, Crystal Structure Of Aequorin
pdb|1UHI|A Chain A, Crystal Structure Of I-aequorin
pdb|1UHI|B Chain B, Crystal Structure Of I-aequorin
pdb|1UHK|A Chain A, Crystal Structure Of N-Aequorin
pdb|1UHK|B Chain B, Crystal Structure Of N-Aequorin
Length = 191
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 23 FDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER 78
FD++D D++G I+ D+ +A+ AG S ED + V D ++ G ++ DE R
Sbjct: 115 FDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCE---ETFRVCDIDESGQLDVDEMTR 169
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 103 VFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLK 158
+F ++DKD +G ++ + K+Y AG + +D + R+ DE+ + D + +
Sbjct: 114 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGT--MISVADFNKDGYVEYD 74
+++K F+++D D+ G I ++L+ G A D + T +++ D + DG + D
Sbjct: 41 AQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD 100
Query: 75 EFERVL 80
EF +++
Sbjct: 101 EFAKMV 106
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAA-----TDDDIKAMIRLGGGDENDGVSFD 154
+++VF+++DKD G + +LK + GF+A D + KA++ G D + + D
Sbjct: 43 VKEVFEILDKDQSGFIEEEELKGVLK--GFSAHGRDLNDTETKALLAAGDSDHDGKIGAD 100
Query: 155 GLLKILA 161
K++A
Sbjct: 101 EFAKMVA 107
>pdb|2K7C|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 C-Domain
pdb|2K7D|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain
Length = 72
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAF---YAGRRASEEDGDVIGTMISVADFNKDGYVEYDE 75
L+ AF D + DG+IS +LR G + D I +I D N DG V+++E
Sbjct: 9 LRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRD---IEEIIRDVDLNGDGRVDFEE 65
Query: 76 FERVL 80
F R++
Sbjct: 66 FVRMM 70
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYM-NCAGFAATDDDIKAMIR 141
+ D F+ D +GDG +S +L+ M G DI+ +IR
Sbjct: 9 LRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIR 51
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEY 73
A S L F +D DR G IS +L+ + + + + ++IS+ D V +
Sbjct: 1 ADQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 60
Query: 74 DEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATD 133
EF V +Y ++VF+ D+D G + +LK + +G+ +D
Sbjct: 61 SEFTGVW--KYITD------------WQNVFRTYDRDNSGMIDKNELKQAL--SGYRLSD 104
Query: 134 DDIKAMIRLGGGDENDGVSFDGLLK 158
+IR ++FD ++
Sbjct: 105 QFHDILIRKFDRQGRGQIAFDDFIQ 129
>pdb|1YX7|A Chain A, Nmr Structure Of Calsensin, Energy Minimized Average
Structure.
pdb|1YX8|A Chain A, Nmr Structure Of Calsensin, 20 Low Energy Structures
Length = 83
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFYA---GRRASEEDG--DVIGTMISVADFNKDGY 70
+ L+ AF +DA+ DG ++ +L+ F +A +D + +I +AD N DG
Sbjct: 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGK 65
Query: 71 VEYDEF 76
+ +EF
Sbjct: 66 ISKEEF 71
>pdb|1B8R|A Chain A, Parvalbumin
Length = 108
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRA---SEEDGDVIGTMISVADFNKDGYVEYDE 75
+K AF +ID D+ G I D+L+ F +A + DG+ T + D + DG + DE
Sbjct: 43 VKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGET-KTFLKAGDSDGDGKIGVDE 101
Query: 76 FERVL 80
+ ++
Sbjct: 102 WTALV 106
>pdb|3I5G|B Chain B, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|B Chain B, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|B Chain B, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|B Chain B, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 153
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
+++ F ++D+D DG + DLK + G DD++ AM++ G N
Sbjct: 18 LKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLN 66
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFYAG 45
LK AF +ID DRDG I +DL+ ++
Sbjct: 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSS 44
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 22 AFDVIDADRDGKISRDD-LRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVL 80
F+V D ++DG+I + ++A R + ++ + + D + DGY+ +E ++
Sbjct: 68 VFNVFDENKDGRIEFSEFIQALSVTSRGTLDEK--LRWAFKLYDLDNDGYITRNEMLDIV 125
Query: 81 DLEYXXXXXXXXXXXXXXLMED----VFKVMDKDGDGRLSHGDLK 121
D Y E +F +MDK+ DG+L+ + +
Sbjct: 126 DAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQ 170
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142
+ FK D++G G +S +L+ + G +D+D+ +I+L
Sbjct: 88 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
>pdb|1UHH|A Chain A, Crystal Structure Of Cp-Aequorin
pdb|1UHH|B Chain B, Crystal Structure Of Cp-Aequorin
pdb|1UHJ|A Chain A, Crystal Structure Of Br-Aequorin
pdb|1UHJ|B Chain B, Crystal Structure Of Br-Aequorin
Length = 191
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 23 FDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER 78
FD++D D++G I+ D+ +A+ AG S ED + V D ++ G ++ DE R
Sbjct: 115 FDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCE---ETFRVCDIDESGQLDVDEXTR 169
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 103 VFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
+F ++DKD +G ++ + K+Y AG + +D + R+ DE+
Sbjct: 114 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDES 159
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142
+ FK D++G G +S +L+ + G +D+D+ +I+L
Sbjct: 88 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142
+ FK D++G G +S +L+ + G +D+D+ +I+L
Sbjct: 86 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 126
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142
+ FK D++G G +S +L+ + G +D+D+ +I+L
Sbjct: 85 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 125
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142
+ FK D++G G +S +L+ + G +D+D+ +I+L
Sbjct: 88 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142
+ FK D++G G +S +L+ + G +D+D+ +I+L
Sbjct: 85 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 125
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMI----RLGGGDENDG 150
+ F + D DG G + +LK M GF ++IK MI + G G N G
Sbjct: 35 EAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFG 87
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 18 RLKPAFDVIDADRDGKISRDDL----RAFY-----AGRRASEEDG--DVIGTMISVADFN 66
+L AF++ D ++DG I+++++ +A Y +ED + T D N
Sbjct: 139 KLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKN 198
Query: 67 KDGYVEYDEF 76
KDG V DEF
Sbjct: 199 KDGVVTIDEF 208
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 2 CPTGTALRPRDAAKPSRLKPA----------FDVIDADRDGKISRDD-LRAFYAGRRASE 50
CP+G S+ P F+ D D +G +S +D ++ R +
Sbjct: 77 CPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTV 136
Query: 51 EDGDVIGTMISVADFNKDGYVEYDE----FERVLDLEYXXXXXXXXXXXXXXLMEDVFKV 106
++ + ++ D NKDGY+ +E + + D+ +E F+
Sbjct: 137 QEK--LNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQK 194
Query: 107 MDKDGDGRLS 116
MDK+ DG ++
Sbjct: 195 MDKNKDGVVT 204
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL-----GGGDENDGVSF- 153
ME +FK D +GDG++S +L + G + D+ + M + G D N+ +SF
Sbjct: 4 MERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFC 63
Query: 154 ---DGLLKILA 161
GL+K +A
Sbjct: 64 NANPGLMKDVA 74
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
++ F D + DGKIS +L A R D + M++ D + DG+++++EF
Sbjct: 4 MERIFKRFDTNGDGKISLSELTD--ALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEF 59
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL-----GGGDENDGVSF- 153
ME +FK D +GDG++S +L + G + D+ + M + G D N+ +SF
Sbjct: 5 MERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFC 64
Query: 154 ---DGLLKILA 161
GL+K +A
Sbjct: 65 NANPGLMKDVA 75
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76
++ F D + DGKIS +L A R D + M++ D + DG+++++EF
Sbjct: 5 MERIFKRFDTNGDGKISLSELTD--ALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEF 60
>pdb|2FCE|A Chain A, Solution Structure Of C-Lobe Myosin Light Chain From
Saccharomices Cerevisiae
Length = 70
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 104 FKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIR 141
F+V DK+ G++S GDL+ + G TD ++ +++
Sbjct: 11 FQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLK 48
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEY 73
AK AF V D + GK+S DLR G D +V ++ + + +G ++Y
Sbjct: 2 AKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEV-DELLKGVEVDSNGEIDY 60
Query: 74 DEF 76
+F
Sbjct: 61 KKF 63
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAFYA------GRRAS---EEDGDV--IGTMISVADFN 66
+LK AF++ D ++DG I+++++ A GR ED + + D N
Sbjct: 166 KLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRN 225
Query: 67 KDGYVEYDEF 76
+DG V DEF
Sbjct: 226 QDGVVTIDEF 235
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFD 154
E +FK D +GDG++S +L + G + T D+++ M+ D + +SFD
Sbjct: 14 ERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFD 66
>pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Obelia Geniculata At
1.82 A Resolution
Length = 195
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 103 VFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIR 141
VF + DKDG G ++ + K+Y +G + +++D + +
Sbjct: 118 VFDIFDKDGSGTITLDEWKAYGRISGISPSEEDCEKTFQ 156
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 12 DAAKPSRLKPA---------FDVIDADRDGKISRDDLRAF--YAGRRASEEDGDVIGTMI 60
D AK +R +P FD+ D D G I+ D+ +A+ +G SEED +
Sbjct: 99 DLAKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGRISGISPSEEDCE---KTF 155
Query: 61 SVADFNKDGYVEYDEFER 78
D + G ++ DE R
Sbjct: 156 QHCDLDNSGELDVDEMTR 173
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 18 RLKPAFDVIDADRDGKISRDDL----RAFYAGRRA------SEEDG------DVIGTMIS 61
+LK F + D DR+G I R +L + Y ++A +E+ G +V+ +
Sbjct: 96 KLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFL 155
Query: 62 VADFNKDGYVEYDEF 76
+ D N DG + +EF
Sbjct: 156 LVDENGDGQLSLNEF 170
>pdb|1M46|A Chain A, Crystal Structure Of Mlc1p Bound To Iq4 Of Myo2p, A Class
V Myosin
pdb|1M45|A Chain A, Crystal Structure Of Mlc1p Bound To Iq2 Of Myo2p, A Class
V Myosin
pdb|1N2D|A Chain A, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
pdb|1N2D|B Chain B, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
Length = 148
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 104 FKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIR 141
F+V DK+ G++S GDL+ + G TD ++ +++
Sbjct: 89 FQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLK 126
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEY 73
AK AF V D + GK+S DLR G D +V ++ + + +G ++Y
Sbjct: 80 AKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEV-DELLKGVEVDSNGEIDY 138
Query: 74 DEF 76
+F
Sbjct: 139 KKF 141
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMI 140
+D+F + DK G G ++ L Y+ G+ T+ ++ +I
Sbjct: 7 KDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDII 46
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 104 FKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
FK+ D D G++S +LK G TD++++ MI D + VS L+I+
Sbjct: 17 FKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 73
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMI 140
E +FK D +GDG++S +L + G + T D++K M+
Sbjct: 12 ERIFKRFDANGDGKISAAELGEALKTLG-SITPDEVKHMM 50
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 9 RPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKD 68
P+D A+ R+ F DA+ DGKIS +L A + D + M++ D + D
Sbjct: 4 HPQDKAERERI---FKRFDANGDGKISAAELGE--ALKTLGSITPDEVKHMMAEIDTDGD 58
Query: 69 GYVEYDEF 76
G++ + EF
Sbjct: 59 GFISFQEF 66
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDD----LRAFYAGRRASEEDGDVIGTMISVADFNKDGY 70
K +L+ AF + D D+DG IS + L+ + ++ I AD + DG
Sbjct: 88 KEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGR 147
Query: 71 VEYDEF 76
+ ++EF
Sbjct: 148 ISFEEF 153
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTM---ISVADFNKDGYVEYDE 75
++ D+ D D +G++ D + F G GD + + D +KDGY+ E
Sbjct: 55 VQRVIDIFDTDGNGEV---DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGE 111
Query: 76 FERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLS 116
+VL + +++ DKDGDGR+S
Sbjct: 112 LFQVLKM---MVGNNLKDTQLQQIVDKTIINADKDGDGRIS 149
>pdb|3J0H|A Chain A, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|B Chain B, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|C Chain C, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|D Chain D, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|E Chain E, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|F Chain F, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0I|A Chain A, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|B Chain B, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|C Chain C, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|D Chain D, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|E Chain E, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|F Chain F, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
Length = 295
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 8 LRPRDAAKPSRLKPAFDVIDADRDGKISR 36
LRP DAA PSRL A ++++ + I R
Sbjct: 1 LRPEDAANPSRLIVAIEIVEDEIPLTIRR 29
>pdb|3TUY|B Chain B, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|E Chain E, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 161
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
M++ F ++D++ DG + DLK + G D ++ AM++ G N
Sbjct: 25 MKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKEAPGPLN 73
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTM 59
+K AF +ID +RDG I +DL+ ++ + +D ++ +
Sbjct: 23 QEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAML 65
>pdb|3PN7|B Chain B, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|E Chain E, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|B Chain B, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|E Chain E, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
Length = 161
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
M++ F ++D++ DG + DLK + G D ++ AM++ G N
Sbjct: 25 MKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKEAPGPLN 73
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTM 59
+K AF +ID +RDG I +DL+ ++ + +D ++ +
Sbjct: 23 QEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAML 65
>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
(Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.90 A Resolution
Length = 248
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 110 DGDGRLSHGDLKSYM-NCAGFAATD 133
D +GRL+ G L +++ NCAGF A+D
Sbjct: 21 DFNGRLTXGVLGNHLLNCAGFHASD 45
>pdb|3SPE|A Chain A, Crystal Structure Of The Tail Sheath Protein Protease
Resistant Fragment From Bacteriophage Phikz
pdb|3SPE|B Chain B, Crystal Structure Of The Tail Sheath Protein Protease
Resistant Fragment From Bacteriophage Phikz
Length = 295
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 8 LRPRDAAKPSRLKPAFDVID 27
LRP DAA PSRL A ++++
Sbjct: 1 LRPEDAANPSRLIVAIEIVE 20
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDD----LRAFYAGRRASEEDGDVIGTMISVADFNKDGY 70
K +L+ AF + D D+DG IS + L+ + ++ I AD + DG
Sbjct: 87 KEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGR 146
Query: 71 VEYDEF 76
+ ++EF
Sbjct: 147 ISFEEF 152
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTM---ISVADFNKDGYVEYDE 75
++ D+ D D +G++ D + F G GD + + D +KDGY+ E
Sbjct: 54 VQRVIDIFDTDGNGEV---DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGE 110
Query: 76 FERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLS 116
+VL + +++ DKDGDGR+S
Sbjct: 111 LFQVLKM---MVGNNLKDTQLQQIVDKTIINADKDGDGRIS 148
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDD----LRAFYAGRRASEEDGDVIGTMISVADFNKDGY 70
K +L+ AF + D D+DG IS + L+ + ++ I AD + DG
Sbjct: 74 KEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGR 133
Query: 71 VEYDEF 76
+ ++EF
Sbjct: 134 ISFEEF 139
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTM---ISVADFNKDGYVEYDE 75
++ D+ D D +G++ D + F G GD + + D +KDGY+ E
Sbjct: 41 VQRVIDIFDTDGNGEV---DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGE 97
Query: 76 FERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLS 116
+VL + +++ DKDGDGR+S
Sbjct: 98 LFQVLKM---MVGNNLKDTQLQQIVDKTIINADKDGDGRIS 135
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal
Muscle Troponin-C
Length = 76
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAF--YAGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS +L G+ ++E+ D I I D + G ++++
Sbjct: 9 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFE 65
Query: 75 EF 76
EF
Sbjct: 66 EF 67
>pdb|1S3P|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin S55d/e59d
Mutant
Length = 109
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEED--GDVIGTMISVADFNKDGYVEYDEF 76
+K F ++D D+DG I D+L + G + D T+++ D + DG + +EF
Sbjct: 43 VKKVFHILDKDKDGFIDEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEF 102
Query: 77 ERVL 80
++
Sbjct: 103 STLV 106
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 15 KPSRLKPAFDVIDADRDGKISRDD----LRAFYAGRRASEEDGDVIGTMISVADFNKDGY 70
K +L+ AF + D D+DG IS + L+ + ++ I AD + DG
Sbjct: 73 KEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGR 132
Query: 71 VEYDEF 76
+ ++EF
Sbjct: 133 ISFEEF 138
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTM---ISVADFNKDGYVEYDE 75
++ D+ D D +G++ D + F G GD + + D +KDGY+ E
Sbjct: 40 VQRVIDIFDTDGNGEV---DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGE 96
Query: 76 FERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDGRLS 116
+VL + +++ DKDGDGR+S
Sbjct: 97 LFQVLKM---MVGNNLKDTQLQQIVDKTIINADKDGDGRIS 134
>pdb|2OS8|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
M++ F ++D++ DG + DLK + G D ++ AM++ G N
Sbjct: 21 MKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKEAPGPLN 69
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTM 59
+K AF +ID +RDG I +DL+ ++ + +D ++ +
Sbjct: 19 QEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAML 61
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 104 FKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
FK+ D D G++S +LK G TD++++ MI D + VS L+I+
Sbjct: 27 FKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 83
>pdb|1BU3|A Chain A, Refined Crystal Structure Of Calcium-Bound Silver Hake
(Pi 4.2) Parvalbumin At 1.65 A
Length = 109
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 19 LKPAFDVIDADRDGKISRDDLR----AFYAGRRA 48
+K AF VID D+ G I D+L+ F AG RA
Sbjct: 44 IKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARA 77
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain
Of Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr,
40 Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle,
Nmr, Minimized Average Structure
Length = 90
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAF--YAGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS +L G+ ++E+ D I I D + G ++++
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFE 76
Query: 75 EF 76
EF
Sbjct: 77 EF 78
>pdb|2EC6|B Chain B, Placopecten Striated Muscle Myosin Ii
Length = 133
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148
M++ F ++D++ DG + DLK + G D ++ AM++ G N
Sbjct: 4 MKEAFTMIDQNRDGFIDINDLKEEFSSLGRTPDDKELTAMLKEAPGPLN 52
>pdb|2PVB|A Chain A, Pike Parvalbumin (Pi 4.10) At Low Temperature (100k) And
Atomic Resolution (0.91 A).
pdb|3PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|1PVB|A Chain A, X-Ray Structure Of A New Crystal Form Of Pike 4.10
Parvalbumin
pdb|2PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|1PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|4PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
Length = 108
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNK--DGYVEYDEF 76
+K AF VID D+ G I D+L+ F S T +AD +K DG + DEF
Sbjct: 43 VKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEF 102
Query: 77 ERVL 80
++
Sbjct: 103 AAMI 106
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 17 SRLKPAFDVIDADRDGKISRDDL-------RAFYAGRRASEEDGDVIGTMISVADFNKDG 69
+LK F + DAD +G I +++L +A + S E + I + D N DG
Sbjct: 93 QKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPE--EFINLVFHKIDINNDG 150
Query: 70 YVEYDEF 76
+ +EF
Sbjct: 151 ELTLEEF 157
>pdb|1XVJ|A Chain A, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
pdb|1XVJ|B Chain B, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
Length = 109
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEED--GDVIGTMISVADFNKDGYVEYDEF 76
+K F ++D D+ G I D+L + G + D T+++ D + G +E +EF
Sbjct: 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGSGKIEVEEF 102
Query: 77 ERVL 80
++
Sbjct: 103 STLV 106
>pdb|2HF5|A Chain A, The Structure And Function Of A Novel Two-Site Calcium-
Binding Fragment Of Calmodulin
Length = 68
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAG 128
+ + F+V DKDG+G +S +L+ M G
Sbjct: 40 IREAFRVFDKDGNGYISAAELRHVMTNLG 68
>pdb|2FCD|A Chain A, Solution Structure Of N-Lobe Myosin Light Chain From
Saccharomices Cerevisiae
Length = 78
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMI 140
+D+F + DK G G ++ L Y+ G+ T+ ++ +I
Sbjct: 7 KDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDII 46
>pdb|3J04|C Chain C, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|F Chain F, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 148
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 104 FKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+V DK+G+G + +++ + G T+++++ ++ G D N ++++ L++++
Sbjct: 90 LRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQLVA-GHEDSNGCINYEELVRMV 145
>pdb|1BR1|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1I84|T Chain T, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|W Chain W, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|3DTP|C Chain C, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|D Chain D, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 150
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 104 FKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+V DK+G+G + +++ + G T+++++ ++ G D N ++++ L++++
Sbjct: 92 LRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQLVA-GHEDSNGCINYEELVRMV 147
>pdb|3MSE|B Chain B, Crystal Structure Of C-Terminal Domain Of Pf110239
Length = 180
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 19 LKPAFDVIDADRDGKISRDDL 39
LK AF+ ID D DG IS+ D+
Sbjct: 110 LKAAFNKIDKDEDGYISKSDI 130
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 18 RLKPAFDVIDADRDGKISRDDLRAF------YAGRRAS---EED--GDVIGTMISVADFN 66
+LK AF++ D ++DG I+++++ A GR ED + + D N
Sbjct: 10 KLKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERFFEKMDRN 69
Query: 67 KDGYVEYDEF 76
+DG V +EF
Sbjct: 70 QDGVVTIEEF 79
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 23 FDVIDADRDGKISRDDLRAFYAGRRASEED--GDVIGTMISVADFNKDGYVEYDEF 76
F D D +GKIS ++L+ + GR E I +++ D N DG +++ EF
Sbjct: 135 FKFFDIDGNGKISVEELKRIF-GRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEF 189
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 54 DVIGTMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDG 113
D +M++V D + G + ++EF+ + + + ++K D D G
Sbjct: 54 DTCRSMVAVMDSDTTGKLGFEEFKYLWN--------------NIKKWQGIYKRFDTDRSG 99
Query: 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ +L AGF + I +MI DE + FD + L
Sbjct: 100 TIGSNELPGAFEAAGFHL-NQHIYSMIIRRYSDETGNMDFDNFISCLV 146
>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|F Chain F, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|C Chain C, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|F Chain F, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|C Chain C, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|F Chain F, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 156
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142
+ FK D++G G +S +L+ ++ G +D+++ +I L
Sbjct: 88 EAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINL 128
>pdb|3LI6|A Chain A, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|D Chain D, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|G Chain G, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|J Chain J, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
Length = 66
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 23 FDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER 78
F ID + DG +S ++++AF + +RA + + ++ + D + +G ++ +EF +
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNE-QLLQLIFKSIDADGNGEIDQNEFAK 60
>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142
+ FK D++G G +S +L+ ++ G +D+++ +I L
Sbjct: 89 EAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINL 129
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 54 DVIGTMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDG 113
D +M++V D + G + ++EF+ + + + ++K D D G
Sbjct: 47 DTCRSMVAVMDSDTTGKLGFEEFKYLWN--------------NIKKWQGIYKRFDTDRSG 92
Query: 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ +L AGF + I +MI DE + FD + L
Sbjct: 93 TIGSNELPGAFEAAGFHL-NQHIYSMIIRRYSDETGNMDFDNFISCLV 139
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 54 DVIGTMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDG 113
D +M++V D + G + ++EF+ + + + ++K D D G
Sbjct: 58 DTCRSMVAVMDSDTTGKLGFEEFKYLWN--------------NIKRWQAIYKQFDTDRSG 103
Query: 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ +L AGF + +IR DE+ + FD + L
Sbjct: 104 TICSSELPGAFEAAGFHLNEHLYNMIIR-RYSDESGNMDFDNFISCLV 150
>pdb|2LC5|A Chain A, Calmodulin-Like Protein From Entamoeba Histolytica:
Solution Structure And Calcium-Binding Properties Of A
Partially Folded Protein
Length = 85
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIR 141
+ F++ DKD D +L+ +L + M G T I +++
Sbjct: 18 EAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57
>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii
Length = 156
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142
+ FK D++G G +S +L+ ++ G +D+++ +I L
Sbjct: 88 EAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINL 128
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 16 PSRLKPAFDVIDADRDGKISRDDLRAFY--AGRRASEEDGDVIGTMISVADFNKDGYVEY 73
L F + D + DG I ++L G EED I ++ +D N DG +++
Sbjct: 9 EEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEED---IEDLMKDSDKNNDGRIDF 65
Query: 74 DEFERVLD 81
DEF ++++
Sbjct: 66 DEFLKMME 73
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160
+ F++ DK+ DG + +L + G ++DI+ +++ + + + FD LK++
Sbjct: 14 NCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKMM 72
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 54 DVIGTMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDG 113
D +M++V D + G + ++EF+ + + + ++K D D G
Sbjct: 58 DTCRSMVAVMDSDTTGKLGFEEFKYLWN--------------NIKKWQGIYKRFDTDRSG 103
Query: 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ +L AGF + I +MI DE + FD + L
Sbjct: 104 TIGSNELPGAFEAAGFHL-NQHIYSMIIRRYSDETGNMDFDNFISCLV 150
>pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Without The
N-Terminal Domain
Length = 73
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEED--GDVIGTMISVADFNKDGYVEYDEF 76
+K F ++D D+ G I D+L + G + D T+++ D + DG + +EF
Sbjct: 7 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEF 66
Query: 77 ERVL 80
++
Sbjct: 67 STLV 70
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 104 FKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMI 140
F++ D D G++S +L+ G TD++++AMI
Sbjct: 102 FQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMI 138
>pdb|1RTP|1 Chain 1, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|2 Chain 2, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|3 Chain 3, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RWY|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|B Chain B, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|C Chain C, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|2JWW|A Chain A, Calcium-Free Rat Alpha-Parvalbumin
Length = 109
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEED--GDVIGTMISVADFNKDGYVEYDEF 76
+K F ++D D+ G I D+L + G + D T+++ D + DG + +EF
Sbjct: 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEF 102
Query: 77 ERVL 80
++
Sbjct: 103 STLV 106
>pdb|3F45|A Chain A, Structure Of The R75a Mutant Of Rat Alpha-Parvalbumin
Length = 109
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEED--GDVIGTMISVADFNKDGYVEYDEF 76
+K F ++D D+ G I D+L + G + D T+++ D + DG + +EF
Sbjct: 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDAADLSAKETKTLMAAGDKDGDGKIGVEEF 102
Query: 77 ERVL 80
++
Sbjct: 103 STLV 106
>pdb|1SMG|A Chain A, Calcium-Bound E41a Mutant Of The N-Domain Of Chicken
Troponin C, Nmr, 40 Structures
Length = 90
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 17 SRLKPAFDVIDADRDGKISRDDLRAF--YAGRRASEEDGDVIGTMISVADFNKDGYVEYD 74
+ K AFD+ DAD G IS L G+ ++E+ D I I D + G ++++
Sbjct: 20 AEFKAAFDMFDADGGGDISTKALGTVMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFE 76
Query: 75 EF 76
EF
Sbjct: 77 EF 78
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 54 DVIGTMISVADFNKDGYVEYDEFERVLDLEYXXXXXXXXXXXXXXLMEDVFKVMDKDGDG 113
D +M++V D + G + ++EF+ + + + ++K D D G
Sbjct: 58 DTSRSMVAVMDSDTTGKLGFEEFKYLWN--------------NIKKWQGIYKRFDTDRSG 103
Query: 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161
+ +L AGF + I +MI DE + FD + L
Sbjct: 104 TIGSNELPGAFEAAGFHL-NQHIYSMIIRRYSDETGNMDFDNFISCLV 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,929,587
Number of Sequences: 62578
Number of extensions: 194224
Number of successful extensions: 1636
Number of sequences better than 100.0: 274
Number of HSP's better than 100.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 569
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)