Query 031051
Match_columns 166
No_of_seqs 122 out of 1864
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 08:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 6.6E-30 1.4E-34 164.5 15.6 147 9-164 12-158 (160)
2 KOG0027 Calmodulin and related 100.0 4.9E-28 1.1E-32 158.3 16.4 147 12-162 3-149 (151)
3 PTZ00183 centrin; Provisional 99.9 5.4E-25 1.2E-29 145.1 17.1 148 10-165 10-157 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 8.3E-25 1.8E-29 138.2 15.0 145 11-163 27-171 (172)
5 KOG0030 Myosin essential light 99.9 5.6E-24 1.2E-28 131.4 13.3 144 11-161 5-150 (152)
6 PTZ00184 calmodulin; Provision 99.9 2E-23 4.3E-28 136.2 15.7 143 12-162 6-148 (149)
7 KOG0037 Ca2+-binding protein, 99.9 2.6E-22 5.5E-27 133.4 15.6 134 15-162 55-188 (221)
8 KOG0031 Myosin regulatory ligh 99.9 1.3E-21 2.9E-26 122.9 14.5 138 12-161 27-164 (171)
9 KOG0034 Ca2+/calmodulin-depend 99.9 6.7E-20 1.5E-24 122.1 14.2 143 11-165 27-178 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.1E-18 2.4E-23 116.3 14.7 145 12-164 21-177 (193)
11 KOG0036 Predicted mitochondria 99.8 1.4E-18 3E-23 125.1 14.4 141 12-165 9-149 (463)
12 KOG4223 Reticulocalbin, calume 99.6 9.1E-15 2E-19 102.8 9.7 141 15-158 161-301 (325)
13 PLN02964 phosphatidylserine de 99.6 3.4E-14 7.4E-19 110.2 12.5 120 10-142 136-273 (644)
14 cd05022 S-100A13 S-100A13: S-1 99.5 4.2E-14 9.2E-19 83.6 7.2 65 98-162 8-75 (89)
15 PF13499 EF-hand_7: EF-hand do 99.5 1.1E-13 2.3E-18 78.0 7.4 62 99-160 1-66 (66)
16 KOG0027 Calmodulin and related 99.5 1.4E-12 3E-17 85.3 11.2 103 52-162 6-113 (151)
17 KOG4223 Reticulocalbin, calume 99.5 3.2E-13 6.9E-18 95.2 8.5 148 14-162 74-228 (325)
18 cd05027 S-100B S-100B: S-100B 99.5 4.6E-13 1E-17 79.3 7.7 67 98-164 8-81 (88)
19 KOG0037 Ca2+-binding protein, 99.4 1E-12 2.2E-17 88.0 9.3 88 15-117 122-209 (221)
20 KOG0377 Protein serine/threoni 99.4 2E-12 4.4E-17 94.6 10.7 148 12-162 459-615 (631)
21 cd05022 S-100A13 S-100A13: S-1 99.4 1.4E-12 3E-17 77.2 7.5 69 14-83 5-76 (89)
22 KOG0038 Ca2+-binding kinase in 99.4 2E-12 4.3E-17 81.2 8.4 102 56-164 73-179 (189)
23 PTZ00183 centrin; Provisional 99.4 1.3E-11 2.9E-16 81.1 12.4 103 52-162 15-118 (158)
24 KOG0044 Ca2+ sensor (EF-Hand s 99.4 3.9E-12 8.4E-17 85.2 9.6 112 14-126 61-175 (193)
25 PF13499 EF-hand_7: EF-hand do 99.4 2.5E-12 5.4E-17 72.3 7.1 63 18-80 1-66 (66)
26 cd05029 S-100A6 S-100A6: S-100 99.4 3.7E-12 8.1E-17 75.4 7.5 65 98-162 10-79 (88)
27 cd05031 S-100A10_like S-100A10 99.4 3.5E-12 7.7E-17 76.7 7.3 68 98-165 8-82 (94)
28 cd05027 S-100B S-100B: S-100B 99.3 1.3E-11 2.9E-16 73.0 8.3 69 14-83 5-80 (88)
29 COG5126 FRQ1 Ca2+-binding prot 99.3 5.7E-11 1.2E-15 77.1 11.7 100 54-162 20-120 (160)
30 PTZ00184 calmodulin; Provision 99.3 8E-11 1.7E-15 76.5 12.0 102 53-162 10-112 (149)
31 cd05026 S-100Z S-100Z: S-100Z 99.3 1.7E-11 3.6E-16 73.5 7.9 65 98-162 10-81 (93)
32 cd00052 EH Eps15 homology doma 99.3 1.9E-11 4.2E-16 68.8 7.5 63 101-165 2-64 (67)
33 cd05025 S-100A1 S-100A1: S-100 99.3 1.7E-11 3.7E-16 73.5 7.6 65 98-162 9-80 (92)
34 PF13833 EF-hand_8: EF-hand do 99.3 2.3E-11 5E-16 65.6 6.6 52 111-162 1-53 (54)
35 KOG0040 Ca2+-binding actin-bun 99.3 1.4E-10 3.1E-15 95.2 12.9 142 6-161 2242-2397(2399)
36 smart00027 EH Eps15 homology d 99.2 7.1E-11 1.5E-15 71.3 8.0 65 96-162 8-72 (96)
37 cd00213 S-100 S-100: S-100 dom 99.2 5.9E-11 1.3E-15 70.6 7.2 66 97-162 7-79 (88)
38 cd05026 S-100Z S-100Z: S-100Z 99.2 1.3E-10 2.9E-15 69.6 8.3 69 14-83 7-82 (93)
39 smart00027 EH Eps15 homology d 99.2 9.8E-11 2.1E-15 70.7 7.7 69 12-83 5-73 (96)
40 KOG0034 Ca2+/calmodulin-depend 99.2 2.4E-10 5.3E-15 76.5 10.0 108 19-127 68-176 (187)
41 cd05025 S-100A1 S-100A1: S-100 99.2 1.6E-10 3.6E-15 69.2 8.4 68 15-83 7-81 (92)
42 cd05031 S-100A10_like S-100A10 99.2 1.5E-10 3.2E-15 69.7 7.9 68 15-83 6-80 (94)
43 cd00051 EFh EF-hand, calcium b 99.2 1.6E-10 3.4E-15 63.6 7.5 61 100-160 2-62 (63)
44 cd05029 S-100A6 S-100A6: S-100 99.2 2.2E-10 4.7E-15 67.8 8.2 69 14-83 7-80 (88)
45 cd05023 S-100A11 S-100A11: S-1 99.2 2.3E-10 4.9E-15 67.9 8.0 65 98-162 9-80 (89)
46 PLN02964 phosphatidylserine de 99.2 6.1E-10 1.3E-14 86.9 12.1 123 32-162 119-243 (644)
47 KOG2643 Ca2+ binding protein, 99.2 3.3E-10 7.1E-15 83.0 9.7 133 17-162 318-453 (489)
48 KOG0028 Ca2+-binding protein ( 99.2 1.3E-09 2.8E-14 69.7 10.9 101 53-161 32-133 (172)
49 PF13833 EF-hand_8: EF-hand do 99.1 2.9E-10 6.3E-15 61.2 6.6 52 30-82 1-53 (54)
50 cd00213 S-100 S-100: S-100 dom 99.1 2.6E-10 5.7E-15 67.8 6.9 71 13-83 4-80 (88)
51 cd00052 EH Eps15 homology doma 99.1 4.5E-10 9.9E-15 63.1 7.4 61 20-83 2-62 (67)
52 cd00252 SPARC_EC SPARC_EC; ext 99.1 8.4E-10 1.8E-14 68.5 7.2 62 97-162 47-108 (116)
53 cd05030 calgranulins Calgranul 99.1 8E-10 1.7E-14 65.5 6.7 66 98-163 8-80 (88)
54 PF14658 EF-hand_9: EF-hand do 99.1 1.2E-09 2.5E-14 60.1 6.7 61 102-162 2-64 (66)
55 cd00051 EFh EF-hand, calcium b 99.1 1.7E-09 3.6E-14 59.4 7.6 61 19-80 2-62 (63)
56 cd05023 S-100A11 S-100A11: S-1 99.1 2.1E-09 4.6E-14 63.7 8.2 70 14-83 6-81 (89)
57 KOG4251 Calcium binding protei 99.0 1.1E-09 2.3E-14 75.0 6.8 69 14-82 98-168 (362)
58 KOG2643 Ca2+ binding protein, 99.0 8.9E-09 1.9E-13 75.7 10.8 132 17-161 233-383 (489)
59 PF14658 EF-hand_9: EF-hand do 99.0 4.6E-09 1E-13 57.7 6.6 61 22-83 3-65 (66)
60 cd00252 SPARC_EC SPARC_EC; ext 98.9 6.2E-09 1.3E-13 64.6 7.2 64 13-81 44-107 (116)
61 KOG2562 Protein phosphatase 2 98.9 2.5E-08 5.4E-13 73.9 10.5 128 20-159 281-421 (493)
62 KOG0041 Predicted Ca2+-binding 98.9 1.3E-08 2.9E-13 67.5 7.9 66 97-162 98-163 (244)
63 cd05030 calgranulins Calgranul 98.9 1.4E-08 3.1E-13 60.2 7.1 69 14-83 5-80 (88)
64 KOG0036 Predicted mitochondria 98.8 1.2E-07 2.5E-12 69.6 12.0 127 14-159 48-180 (463)
65 KOG0041 Predicted Ca2+-binding 98.8 3.3E-08 7.2E-13 65.7 8.2 105 12-123 94-200 (244)
66 KOG0751 Mitochondrial aspartat 98.7 1.8E-07 3.9E-12 70.1 10.3 137 12-161 31-174 (694)
67 cd05024 S-100A10 S-100A10: A s 98.7 1.9E-07 4.2E-12 55.0 7.7 64 98-162 8-76 (91)
68 PF00036 EF-hand_1: EF hand; 98.7 5.3E-08 1.1E-12 45.1 3.7 27 100-126 2-28 (29)
69 KOG0031 Myosin regulatory ligh 98.6 2.4E-07 5.2E-12 59.1 7.2 62 97-162 31-92 (171)
70 PF00036 EF-hand_1: EF hand; 98.6 6.6E-08 1.4E-12 44.8 3.4 27 19-45 2-28 (29)
71 KOG4666 Predicted phosphate ac 98.6 4.3E-08 9.3E-13 69.7 4.0 123 28-164 238-361 (412)
72 cd05024 S-100A10 S-100A10: A s 98.6 6E-07 1.3E-11 52.9 8.2 69 14-83 5-77 (91)
73 KOG0751 Mitochondrial aspartat 98.6 2.7E-07 6E-12 69.1 8.0 127 18-159 109-241 (694)
74 KOG0038 Ca2+-binding kinase in 98.5 4.1E-07 9E-12 57.6 6.5 105 20-127 74-178 (189)
75 KOG1029 Endocytic adaptor prot 98.5 2.3E-06 5E-11 67.4 11.2 145 12-162 11-257 (1118)
76 PF13405 EF-hand_6: EF-hand do 98.5 2.4E-07 5.3E-12 43.7 3.7 30 99-128 1-31 (31)
77 PF12763 EF-hand_4: Cytoskelet 98.5 1.2E-06 2.6E-11 53.4 7.3 64 95-161 7-70 (104)
78 PF12763 EF-hand_4: Cytoskelet 98.5 1.2E-06 2.6E-11 53.3 7.2 70 10-83 3-72 (104)
79 PF13405 EF-hand_6: EF-hand do 98.5 2.8E-07 6.1E-12 43.5 3.4 30 18-47 1-31 (31)
80 PRK12309 transaldolase/EF-hand 98.4 2.4E-06 5.3E-11 63.8 9.7 59 91-162 327-385 (391)
81 KOG0169 Phosphoinositide-speci 98.4 8E-06 1.7E-10 64.4 12.3 138 14-164 133-276 (746)
82 KOG0030 Myosin essential light 98.4 1.1E-05 2.3E-10 50.9 10.2 103 52-162 9-116 (152)
83 PF14788 EF-hand_10: EF hand; 98.4 1.7E-06 3.8E-11 45.0 5.6 47 115-161 2-48 (51)
84 KOG0377 Protein serine/threoni 98.3 1.9E-06 4.1E-11 64.0 6.6 69 15-83 545-616 (631)
85 PF13202 EF-hand_5: EF hand; P 98.3 1.5E-06 3.3E-11 38.7 3.2 25 100-124 1-25 (25)
86 PF14788 EF-hand_10: EF hand; 98.2 1.4E-05 3.1E-10 41.6 5.8 50 33-83 1-50 (51)
87 KOG2562 Protein phosphatase 2 98.1 3.9E-05 8.4E-10 57.4 10.1 144 16-162 173-343 (493)
88 PF13202 EF-hand_5: EF hand; P 98.1 5E-06 1.1E-10 37.0 3.1 24 19-42 1-24 (25)
89 PF10591 SPARC_Ca_bdg: Secrete 98.0 1.5E-05 3.2E-10 49.4 5.4 62 96-159 52-113 (113)
90 PRK12309 transaldolase/EF-hand 98.0 3.7E-05 8.1E-10 57.6 7.9 55 52-127 332-386 (391)
91 KOG0040 Ca2+-binding actin-bun 97.9 0.00014 3.1E-09 61.5 10.2 103 53-157 2252-2356(2399)
92 PF09279 EF-hand_like: Phospho 97.8 6.7E-05 1.5E-09 43.8 5.3 64 99-163 1-70 (83)
93 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.8E-05 3.8E-10 49.1 2.0 63 14-79 51-113 (113)
94 KOG1707 Predicted Ras related/ 97.7 0.00055 1.2E-08 53.1 9.4 147 12-162 190-377 (625)
95 KOG0046 Ca2+-binding actin-bun 97.6 0.0002 4.3E-09 54.6 6.4 73 11-84 13-87 (627)
96 KOG0046 Ca2+-binding actin-bun 97.6 0.00032 6.8E-09 53.6 7.0 63 98-161 19-84 (627)
97 KOG4666 Predicted phosphate ac 97.5 0.00089 1.9E-08 48.3 7.7 103 17-128 259-361 (412)
98 smart00054 EFh EF-hand, calciu 97.3 0.00048 1E-08 30.7 3.4 27 19-45 2-28 (29)
99 smart00054 EFh EF-hand, calciu 97.3 0.00056 1.2E-08 30.5 3.3 26 100-125 2-27 (29)
100 PF09279 EF-hand_like: Phospho 97.2 0.0018 4E-08 37.7 5.8 65 18-83 1-70 (83)
101 KOG4065 Uncharacterized conser 97.2 0.0019 4.1E-08 39.6 5.5 60 100-159 69-142 (144)
102 KOG0035 Ca2+-binding actin-bun 97.2 0.0044 9.4E-08 50.7 9.1 143 10-163 740-887 (890)
103 PF05042 Caleosin: Caleosin re 97.1 0.011 2.5E-07 39.0 9.2 109 15-125 5-165 (174)
104 KOG0169 Phosphoinositide-speci 97.1 0.0077 1.7E-07 48.2 9.7 98 52-161 134-231 (746)
105 PLN02952 phosphoinositide phos 96.9 0.014 3E-07 46.3 9.9 90 67-163 13-111 (599)
106 KOG4251 Calcium binding protei 96.8 0.0013 2.8E-08 45.7 2.7 65 95-159 98-165 (362)
107 KOG3555 Ca2+-binding proteogly 96.5 0.0075 1.6E-07 44.0 5.4 109 18-139 212-322 (434)
108 KOG0998 Synaptic vesicle prote 96.4 0.005 1.1E-07 50.9 4.6 145 10-160 122-343 (847)
109 KOG4065 Uncharacterized conser 96.4 0.016 3.5E-07 35.6 5.6 59 21-79 71-142 (144)
110 PF09069 EF-hand_3: EF-hand; 96.2 0.067 1.5E-06 31.6 7.4 65 98-165 3-78 (90)
111 KOG1955 Ral-GTPase effector RA 96.2 0.014 2.9E-07 44.8 5.4 64 96-161 229-292 (737)
112 KOG1955 Ral-GTPase effector RA 96.0 0.016 3.5E-07 44.4 5.1 70 11-83 225-294 (737)
113 PF05517 p25-alpha: p25-alpha 96.0 0.061 1.3E-06 35.3 7.3 65 20-84 5-71 (154)
114 KOG1029 Endocytic adaptor prot 96.0 0.015 3.2E-07 46.9 5.0 67 13-82 191-257 (1118)
115 PF05042 Caleosin: Caleosin re 95.9 0.092 2E-06 34.8 7.7 66 97-162 6-124 (174)
116 KOG0042 Glycerol-3-phosphate d 95.9 0.019 4.1E-07 44.8 4.9 64 99-162 594-657 (680)
117 KOG4578 Uncharacterized conser 95.8 0.011 2.3E-07 43.0 3.1 67 97-163 332-399 (421)
118 KOG2243 Ca2+ release channel ( 95.8 0.073 1.6E-06 46.1 8.1 59 102-161 4061-4119(5019)
119 KOG1265 Phospholipase C [Lipid 95.5 0.88 1.9E-05 37.9 12.9 123 26-163 157-300 (1189)
120 PF05517 p25-alpha: p25-alpha 95.4 0.12 2.5E-06 34.0 6.7 61 101-161 2-68 (154)
121 PF08726 EFhand_Ca_insen: Ca2+ 95.2 0.021 4.5E-07 32.0 2.4 55 96-158 4-65 (69)
122 KOG3866 DNA-binding protein of 94.5 0.17 3.8E-06 36.7 6.2 61 100-160 246-322 (442)
123 KOG4578 Uncharacterized conser 94.5 0.018 3.9E-07 41.9 1.2 66 18-83 334-399 (421)
124 KOG3555 Ca2+-binding proteogly 94.3 0.17 3.7E-06 37.2 5.7 68 11-83 244-311 (434)
125 KOG0042 Glycerol-3-phosphate d 94.0 0.13 2.9E-06 40.4 4.9 72 11-83 587-658 (680)
126 KOG4347 GTPase-activating prot 93.9 0.12 2.5E-06 41.1 4.6 78 34-120 535-612 (671)
127 KOG0998 Synaptic vesicle prote 93.3 0.26 5.6E-06 41.2 5.8 142 14-161 8-189 (847)
128 PLN02952 phosphoinositide phos 92.3 2.5 5.4E-05 34.1 9.8 89 30-125 13-109 (599)
129 KOG2243 Ca2+ release channel ( 92.1 0.39 8.5E-06 42.0 5.4 59 22-82 4062-4120(5019)
130 PF08414 NADPH_Ox: Respiratory 91.8 0.65 1.4E-05 27.9 4.7 63 15-83 28-93 (100)
131 PF14513 DAG_kinase_N: Diacylg 91.4 0.73 1.6E-05 29.6 5.0 71 31-111 5-82 (138)
132 PLN02222 phosphoinositide phos 91.2 1 2.2E-05 36.1 6.6 65 97-163 24-91 (581)
133 PF09068 EF-hand_2: EF hand; 91.2 2.2 4.8E-05 27.0 7.0 90 38-127 25-126 (127)
134 PLN02228 Phosphoinositide phos 91.0 1.8 3.8E-05 34.7 7.7 67 95-163 21-93 (567)
135 KOG0035 Ca2+-binding actin-bun 90.6 0.87 1.9E-05 38.0 5.8 66 97-162 746-816 (890)
136 KOG2871 Uncharacterized conser 89.4 0.29 6.2E-06 36.5 2.1 67 94-160 305-372 (449)
137 PLN02230 phosphoinositide phos 88.8 3.4 7.5E-05 33.3 7.8 67 96-163 27-103 (598)
138 KOG1264 Phospholipase C [Lipid 88.5 4.8 0.0001 33.7 8.4 145 12-162 138-293 (1267)
139 KOG4347 GTPase-activating prot 88.5 0.63 1.4E-05 37.2 3.5 58 17-76 555-612 (671)
140 PF07308 DUF1456: Protein of u 87.9 3.1 6.6E-05 23.3 5.1 46 115-160 14-59 (68)
141 PLN02228 Phosphoinositide phos 87.3 6.5 0.00014 31.6 8.5 74 8-83 15-93 (567)
142 KOG4286 Dystrophin-like protei 87.3 3.3 7.1E-05 34.1 6.8 97 57-164 473-582 (966)
143 PLN02222 phosphoinositide phos 86.0 6 0.00013 31.9 7.7 66 15-82 23-90 (581)
144 PLN02230 phosphoinositide phos 85.0 9.7 0.00021 30.9 8.4 75 7-82 19-102 (598)
145 PF14513 DAG_kinase_N: Diacylg 84.3 1.5 3.3E-05 28.2 3.2 48 113-162 6-60 (138)
146 PF13623 SurA_N_2: SurA N-term 84.1 8.8 0.00019 25.0 6.7 85 69-160 47-145 (145)
147 cd07313 terB_like_2 tellurium 83.3 6 0.00013 23.7 5.4 84 30-123 12-97 (104)
148 PF12174 RST: RCD1-SRO-TAF4 (R 82.0 4.7 0.0001 22.7 4.1 47 112-161 6-52 (70)
149 KOG3866 DNA-binding protein of 81.7 7.2 0.00016 28.7 6.0 92 35-126 225-324 (442)
150 TIGR01848 PHA_reg_PhaR polyhyd 80.4 8.4 0.00018 23.5 5.1 50 105-154 10-69 (107)
151 PLN02223 phosphoinositide phos 80.1 9 0.0002 30.5 6.5 67 96-163 14-93 (537)
152 PF11116 DUF2624: Protein of u 79.6 10 0.00022 22.2 6.2 43 113-155 13-55 (85)
153 KOG4403 Cell surface glycoprot 79.2 18 0.00039 28.0 7.5 102 29-141 40-145 (575)
154 KOG1707 Predicted Ras related/ 78.4 8.2 0.00018 31.0 5.8 65 96-160 193-263 (625)
155 PF07879 PHB_acc_N: PHB/PHA ac 77.0 5.8 0.00013 21.8 3.3 22 105-126 10-31 (64)
156 KOG3449 60S acidic ribosomal p 76.0 14 0.00031 22.6 5.1 44 101-144 4-47 (112)
157 KOG1265 Phospholipase C [Lipid 74.5 56 0.0012 28.1 9.5 89 34-126 205-299 (1189)
158 cd07313 terB_like_2 tellurium 73.7 6.5 0.00014 23.6 3.5 50 112-161 13-64 (104)
159 KOG2871 Uncharacterized conser 72.8 3.2 7E-05 31.2 2.2 68 16-83 308-375 (449)
160 PLN02223 phosphoinositide phos 71.6 38 0.00083 27.2 7.9 75 8-83 7-93 (537)
161 PF00404 Dockerin_1: Dockerin 71.4 6.9 0.00015 16.3 2.3 16 27-42 1-16 (21)
162 PTZ00373 60S Acidic ribosomal 71.3 22 0.00047 22.1 5.3 52 101-157 6-57 (112)
163 PF04157 EAP30: EAP30/Vps36 fa 70.2 34 0.00074 23.9 8.7 38 111-148 110-150 (223)
164 PF01023 S_100: S-100/ICaBP ty 69.7 11 0.00024 18.9 3.2 30 16-45 5-36 (44)
165 KOG4286 Dystrophin-like protei 69.6 41 0.00088 28.2 7.7 114 35-148 401-520 (966)
166 KOG4070 Putative signal transd 68.6 15 0.00032 24.1 4.3 90 16-108 11-108 (180)
167 PF03979 Sigma70_r1_1: Sigma-7 67.7 7.1 0.00015 22.5 2.6 34 111-146 18-51 (82)
168 TIGR03573 WbuX N-acetyl sugar 67.7 18 0.00038 27.2 5.3 43 112-160 300-342 (343)
169 KOG1785 Tyrosine kinase negati 66.4 58 0.0013 25.1 8.2 110 2-127 160-275 (563)
170 KOG0039 Ferric reductase, NADH 66.3 16 0.00035 30.1 5.1 80 68-162 2-89 (646)
171 KOG3077 Uncharacterized conser 66.1 47 0.001 24.0 11.4 114 14-128 61-187 (260)
172 PF05099 TerB: Tellurite resis 66.0 4.1 8.9E-05 25.9 1.5 80 30-119 36-117 (140)
173 TIGR01639 P_fal_TIGR01639 Plas 65.7 18 0.0004 19.6 3.8 32 113-144 8-39 (61)
174 KOG1954 Endocytosis/signaling 64.8 12 0.00026 28.6 3.8 56 99-157 445-500 (532)
175 KOG4004 Matricellular protein 63.7 2.7 5.8E-05 28.8 0.3 56 103-160 192-248 (259)
176 PF03672 UPF0154: Uncharacteri 63.5 23 0.00051 19.5 3.9 32 112-143 29-60 (64)
177 PF08461 HTH_12: Ribonuclease 62.8 14 0.00031 20.3 3.1 36 112-147 11-46 (66)
178 KOG4301 Beta-dystrobrevin [Cyt 62.7 22 0.00048 26.6 4.8 95 57-165 113-218 (434)
179 PF08976 DUF1880: Domain of un 62.4 9.3 0.0002 23.8 2.4 31 52-82 5-35 (118)
180 KOG4004 Matricellular protein 61.4 3.7 8E-05 28.1 0.6 57 23-82 193-250 (259)
181 cd05833 Ribosomal_P2 Ribosomal 61.4 36 0.00078 21.0 5.2 53 102-159 5-57 (109)
182 COG3763 Uncharacterized protei 61.2 27 0.0006 19.6 3.9 43 101-144 26-68 (71)
183 PF09336 Vps4_C: Vps4 C termin 60.0 17 0.00036 19.9 3.0 27 114-140 29-55 (62)
184 KOG4301 Beta-dystrobrevin [Cyt 58.8 45 0.00097 25.1 5.7 65 19-85 112-176 (434)
185 KOG2301 Voltage-gated Ca2+ cha 58.7 8.3 0.00018 35.0 2.4 73 10-83 1410-1485(1592)
186 PRK00523 hypothetical protein; 58.1 32 0.0007 19.4 3.9 31 113-143 38-68 (72)
187 PF07499 RuvA_C: RuvA, C-termi 57.9 24 0.00052 17.9 4.1 38 118-159 4-41 (47)
188 PF07308 DUF1456: Protein of u 57.5 32 0.0007 19.2 5.4 49 34-83 14-62 (68)
189 PF09069 EF-hand_3: EF-hand; 56.4 40 0.00087 20.0 7.4 63 17-82 3-75 (90)
190 KOG0506 Glutaminase (contains 55.5 34 0.00075 27.0 4.9 91 22-113 91-196 (622)
191 cd03035 ArsC_Yffb Arsenate Red 54.7 14 0.0003 22.4 2.4 49 113-164 34-85 (105)
192 KOG3449 60S acidic ribosomal p 54.7 49 0.0011 20.4 6.4 59 19-83 3-61 (112)
193 KOG0039 Ferric reductase, NADH 53.7 38 0.00082 28.0 5.2 89 31-127 2-90 (646)
194 KOG0506 Glutaminase (contains 53.1 38 0.00081 26.8 4.8 63 100-162 88-158 (622)
195 PF12419 DUF3670: SNF2 Helicas 52.9 49 0.0011 21.3 4.8 49 111-159 80-138 (141)
196 PF01885 PTS_2-RNA: RNA 2'-pho 51.9 33 0.00072 23.3 4.0 36 108-143 26-61 (186)
197 cd04411 Ribosomal_P1_P2_L12p R 51.8 54 0.0012 20.1 5.8 41 115-160 17-57 (105)
198 PF02761 Cbl_N2: CBL proto-onc 51.7 48 0.001 19.4 5.7 52 31-83 20-71 (85)
199 cd00086 homeodomain Homeodomai 51.2 34 0.00075 17.6 4.9 39 97-142 12-50 (59)
200 cd08315 Death_TRAILR_DR4_DR5 D 48.2 59 0.0013 19.5 4.8 39 98-142 4-42 (96)
201 PF09312 SurA_N: SurA N-termin 47.9 24 0.00051 21.9 2.7 13 151-163 99-111 (118)
202 PLN00138 large subunit ribosom 47.8 67 0.0014 20.0 5.2 42 103-144 6-47 (113)
203 PRK00819 RNA 2'-phosphotransfe 47.6 54 0.0012 22.2 4.5 35 108-142 27-61 (179)
204 PF13624 SurA_N_3: SurA N-term 47.2 71 0.0015 20.5 5.0 82 68-162 47-132 (154)
205 COG0721 GatC Asp-tRNAAsn/Glu-t 47.1 42 0.00092 20.1 3.5 30 114-143 2-31 (96)
206 PRK01844 hypothetical protein; 46.4 54 0.0012 18.5 3.9 31 113-143 37-67 (72)
207 PF10437 Lip_prot_lig_C: Bacte 46.0 58 0.0013 18.7 4.3 42 117-160 44-86 (86)
208 COG4359 Uncharacterized conser 44.8 1E+02 0.0022 21.3 7.1 79 66-164 9-89 (220)
209 PF13592 HTH_33: Winged helix- 44.1 51 0.0011 17.6 3.6 32 113-144 3-35 (60)
210 TIGR00135 gatC glutamyl-tRNA(G 43.8 54 0.0012 19.3 3.7 28 115-142 1-28 (93)
211 PHA02335 hypothetical protein 43.1 78 0.0017 19.4 6.2 48 68-129 22-71 (118)
212 PRK14981 DNA-directed RNA poly 42.7 56 0.0012 20.2 3.7 29 115-143 79-107 (112)
213 PF08044 DUF1707: Domain of un 42.6 44 0.00096 17.6 2.8 31 111-141 20-50 (53)
214 PHA02105 hypothetical protein 42.4 56 0.0012 17.5 3.4 49 33-81 4-56 (68)
215 PF11848 DUF3368: Domain of un 41.4 51 0.0011 16.8 3.8 32 112-143 15-47 (48)
216 KOG1954 Endocytosis/signaling 40.9 47 0.001 25.6 3.6 57 18-78 445-501 (532)
217 PF10815 ComZ: ComZ; InterPro 39.7 60 0.0013 17.1 3.3 24 119-142 16-39 (56)
218 PRK00034 gatC aspartyl/glutamy 39.7 70 0.0015 18.8 3.7 30 114-143 2-31 (95)
219 cd08313 Death_TNFR1 Death doma 38.9 63 0.0014 18.7 3.3 26 114-141 8-33 (80)
220 PF02459 Adeno_terminal: Adeno 38.6 94 0.002 25.0 5.0 47 101-147 458-504 (548)
221 PF02885 Glycos_trans_3N: Glyc 38.0 70 0.0015 17.4 4.2 31 113-143 13-44 (66)
222 PF06384 ICAT: Beta-catenin-in 37.7 52 0.0011 19.0 2.7 23 119-141 21-43 (78)
223 cd07316 terB_like_DjlA N-termi 37.6 89 0.0019 18.5 6.4 87 30-123 12-98 (106)
224 PF12486 DUF3702: ImpA domain 37.6 1.2E+02 0.0026 19.9 6.5 50 14-63 66-119 (148)
225 cd07176 terB tellurite resista 37.4 63 0.0014 19.2 3.4 82 30-121 15-100 (111)
226 PF09373 PMBR: Pseudomurein-bi 36.9 49 0.0011 15.3 2.2 16 68-83 2-17 (33)
227 PF14164 YqzH: YqzH-like prote 36.5 78 0.0017 17.5 4.0 45 97-141 7-55 (64)
228 PF11116 DUF2624: Protein of u 36.2 93 0.002 18.3 6.1 51 32-83 13-63 (85)
229 PRK06402 rpl12p 50S ribosomal 36.0 1.1E+02 0.0023 18.9 5.7 39 114-157 16-54 (106)
230 PF07862 Nif11: Nitrogen fixat 35.1 66 0.0014 16.2 2.8 21 116-136 28-48 (49)
231 COG5562 Phage envelope protein 34.9 38 0.00082 21.7 2.1 25 59-83 77-101 (137)
232 PRK09462 fur ferric uptake reg 34.7 1.3E+02 0.0028 19.4 4.8 45 98-142 17-61 (148)
233 KOG4403 Cell surface glycoprot 34.5 1.1E+02 0.0023 24.1 4.6 86 66-159 40-126 (575)
234 CHL00185 ycf59 magnesium-proto 34.4 75 0.0016 23.8 3.7 84 46-148 34-124 (351)
235 cd02977 ArsC_family Arsenate R 34.4 1E+02 0.0023 18.3 4.5 50 113-164 34-87 (105)
236 COG2818 Tag 3-methyladenine DN 34.1 63 0.0014 22.1 3.1 43 98-140 55-97 (188)
237 TIGR03798 ocin_TIGR03798 bacte 34.1 82 0.0018 17.1 3.3 25 115-139 25-49 (64)
238 TIGR02736 cbb3_Q_epsi cytochro 33.6 44 0.00095 17.8 1.8 26 139-164 19-44 (56)
239 PF06207 DUF1002: Protein of u 33.5 1.3E+02 0.0028 21.3 4.7 45 116-160 173-221 (225)
240 PF02037 SAP: SAP domain; Int 33.1 60 0.0013 15.2 2.2 18 114-131 3-20 (35)
241 cd08815 Death_TNFRSF25_DR3 Dea 32.9 89 0.0019 18.0 3.2 22 114-137 8-29 (77)
242 PF11593 Med3: Mediator comple 32.7 1.2E+02 0.0025 23.3 4.5 48 113-162 6-54 (379)
243 PRK05988 formate dehydrogenase 32.3 1.3E+02 0.0029 19.8 4.4 20 31-50 36-55 (156)
244 COG1460 Uncharacterized protei 32.2 1.1E+02 0.0023 19.1 3.6 29 115-143 80-108 (114)
245 PF00627 UBA: UBA/TS-N domain; 31.4 47 0.001 15.6 1.7 21 124-146 9-29 (37)
246 PF11300 DUF3102: Protein of u 31.3 1.4E+02 0.0031 19.1 6.1 33 33-65 38-71 (130)
247 PF06952 PsiA: PsiA protein; 31.1 2E+02 0.0043 20.5 5.9 85 1-85 1-88 (238)
248 TIGR02675 tape_meas_nterm tape 31.1 94 0.002 17.5 3.2 16 111-126 27-42 (75)
249 cd08316 Death_FAS_TNFRSF6 Deat 31.0 1.2E+02 0.0027 18.2 3.8 27 114-142 17-43 (97)
250 PRK13654 magnesium-protoporphy 30.9 87 0.0019 23.6 3.6 85 45-148 37-128 (355)
251 PF02337 Gag_p10: Retroviral G 30.9 80 0.0017 18.8 2.9 23 120-142 14-36 (90)
252 cd01047 ACSF Aerobic Cyclase S 30.3 1.1E+02 0.0025 22.7 4.0 84 45-147 17-107 (323)
253 PF12949 HeH: HeH/LEM domain; 29.8 45 0.00098 15.9 1.4 18 114-131 3-20 (35)
254 PF02671 PAH: Paired amphipath 29.7 82 0.0018 15.7 3.3 15 113-127 17-31 (47)
255 PF13331 DUF4093: Domain of un 29.3 1E+02 0.0022 18.1 3.1 26 113-140 61-86 (87)
256 PRK09570 rpoH DNA-directed RNA 29.3 30 0.00064 20.0 0.9 15 114-128 17-31 (79)
257 KOG4629 Predicted mechanosensi 29.3 1.7E+02 0.0037 24.7 5.4 56 98-160 404-459 (714)
258 PF09682 Holin_LLH: Phage holi 28.9 1.4E+02 0.0031 18.2 3.9 32 112-143 65-100 (108)
259 cd03033 ArsC_15kD Arsenate Red 28.3 93 0.002 19.2 3.0 51 113-164 35-85 (113)
260 COG2058 RPP1A Ribosomal protei 28.1 1.5E+02 0.0033 18.3 6.0 43 114-161 16-58 (109)
261 COG4807 Uncharacterized protei 28.0 1.7E+02 0.0037 18.8 7.9 38 98-144 91-128 (155)
262 smart00513 SAP Putative DNA-bi 28.0 76 0.0016 14.7 2.5 17 114-130 3-19 (35)
263 PRK00819 RNA 2'-phosphotransfe 27.8 1.6E+02 0.0035 20.0 4.3 37 28-65 28-64 (179)
264 PF07492 Trehalase_Ca-bi: Neut 27.7 15 0.00032 16.8 -0.4 15 138-152 3-17 (30)
265 PTZ00373 60S Acidic ribosomal 27.3 1.6E+02 0.0035 18.3 6.4 53 22-80 8-60 (112)
266 TIGR02029 AcsF magnesium-proto 27.3 78 0.0017 23.6 2.8 83 46-147 28-117 (337)
267 PF00046 Homeobox: Homeobox do 26.9 1E+02 0.0022 15.8 4.8 38 98-142 13-50 (57)
268 PF14848 HU-DNA_bdg: DNA-bindi 26.6 1.7E+02 0.0037 18.3 4.1 31 112-142 26-56 (124)
269 KOG0129 Predicted RNA-binding 26.4 29 0.00062 27.5 0.6 17 67-83 414-430 (520)
270 PF10982 DUF2789: Protein of u 26.4 95 0.0021 17.7 2.5 30 119-148 7-36 (74)
271 PF08671 SinI: Anti-repressor 26.0 65 0.0014 14.8 1.5 13 114-126 16-28 (30)
272 cd03032 ArsC_Spx Arsenate Redu 26.0 1.1E+02 0.0024 18.7 3.1 49 113-164 35-87 (115)
273 PRK10353 3-methyl-adenine DNA 25.8 77 0.0017 21.7 2.5 44 98-141 54-97 (187)
274 PTZ00056 glutathione peroxidas 25.6 1.1E+02 0.0025 20.9 3.4 34 112-148 162-195 (199)
275 KOG2301 Voltage-gated Ca2+ cha 25.6 60 0.0013 29.9 2.4 70 92-162 1411-1484(1592)
276 TIGR01616 nitro_assoc nitrogen 25.4 1E+02 0.0022 19.5 2.9 51 113-164 36-86 (126)
277 TIGR03581 EF_0839 conserved hy 25.3 2.5E+02 0.0055 19.9 7.1 89 30-126 131-233 (236)
278 TIGR00624 tag DNA-3-methyladen 24.9 1.1E+02 0.0024 20.8 3.1 44 98-141 53-96 (179)
279 PF09107 SelB-wing_3: Elongati 24.9 1.1E+02 0.0025 15.8 3.5 32 30-67 7-38 (50)
280 PF07848 PaaX: PaaX-like prote 24.9 1.4E+02 0.003 16.7 3.5 44 99-144 5-48 (70)
281 PF11569 Homez: Homeodomain le 24.5 1.3E+02 0.0028 16.2 2.8 29 113-143 21-49 (56)
282 PRK13344 spxA transcriptional 24.2 2E+02 0.0043 18.3 4.7 49 113-164 35-87 (132)
283 cd08784 Death_DRs Death Domain 24.0 1.5E+02 0.0033 16.8 3.3 22 115-138 9-30 (79)
284 PF09851 SHOCT: Short C-termin 23.7 91 0.002 14.2 2.0 15 112-126 14-28 (31)
285 PF09506 Salt_tol_Pase: Glucos 23.6 3.1E+02 0.0067 20.9 5.3 44 120-163 116-161 (381)
286 PF07128 DUF1380: Protein of u 23.5 2.1E+02 0.0047 18.5 4.0 49 34-83 27-80 (139)
287 PF10281 Ish1: Putative stress 22.8 1.1E+02 0.0023 14.6 4.4 29 132-160 5-34 (38)
288 PRK10026 arsenate reductase; P 22.6 2.3E+02 0.0049 18.4 5.7 49 113-164 37-89 (141)
289 PF01325 Fe_dep_repress: Iron 22.5 1.4E+02 0.0031 15.9 4.7 51 12-72 3-53 (60)
290 PF08812 YtxC: YtxC-like famil 22.4 96 0.0021 21.8 2.6 31 103-134 148-179 (221)
291 PF08355 EF_assoc_1: EF hand a 22.2 98 0.0021 17.7 2.1 19 143-161 11-29 (76)
292 PF09967 DUF2201: VWA-like dom 22.2 77 0.0017 19.9 1.9 19 109-127 5-23 (126)
293 cd05831 Ribosomal_P1 Ribosomal 22.0 2E+02 0.0043 17.5 4.4 41 113-158 16-56 (103)
294 PHA02771 hypothetical protein; 21.9 1.9E+02 0.0041 17.2 3.3 14 131-144 32-45 (90)
295 PF07261 DnaB_2: Replication i 21.7 1.3E+02 0.0027 16.6 2.6 42 104-145 2-44 (77)
296 PF03960 ArsC: ArsC family; I 21.5 1.3E+02 0.0028 18.1 2.8 52 113-164 31-84 (110)
297 PLN02508 magnesium-protoporphy 21.4 2.1E+02 0.0046 21.6 4.1 79 52-148 39-124 (357)
298 PF14069 SpoVIF: Stage VI spor 21.0 1.9E+02 0.004 16.8 5.2 45 116-161 29-77 (79)
299 PRK06369 nac nascent polypepti 20.9 2.3E+02 0.0049 17.8 3.9 31 114-146 74-104 (115)
300 KOG3341 RNA polymerase II tran 20.7 3.2E+02 0.0069 19.4 7.5 38 111-148 113-154 (249)
301 PF09494 Slx4: Slx4 endonuclea 20.4 1.6E+02 0.0035 15.9 3.8 29 114-142 24-56 (64)
302 PF00690 Cation_ATPase_N: Cati 20.3 1.6E+02 0.0036 15.9 4.6 32 19-50 6-37 (69)
303 COG2979 Uncharacterized protei 20.3 1.3E+02 0.0029 21.0 2.8 33 110-142 122-154 (225)
304 PRK09389 (R)-citramalate synth 20.2 2.4E+02 0.0051 22.6 4.5 45 118-162 321-367 (488)
305 TIGR00264 alpha-NAC-related pr 20.2 2.4E+02 0.0052 17.7 4.0 31 114-146 76-106 (116)
306 cd07978 TAF13 The TATA Binding 20.1 2.1E+02 0.0045 17.0 4.5 19 147-165 51-69 (92)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=6.6e-30 Score=164.47 Aligned_cols=147 Identities=22% Similarity=0.401 Sum_probs=137.7
Q ss_pred CCCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhcccc
Q 031051 9 RPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKAN 88 (166)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 88 (166)
...+..++.+++++|..+|++++|.|+..+|..+++.+|.++ +.+++..++..++. +.+.|+|.+|+.++....
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~-s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~---- 85 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNP-SEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL---- 85 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCC-cHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh----
Confidence 355778999999999999999999999999999999999999 99999999999998 889999999999998882
Q ss_pred CCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 89 SKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
......+.++.+|+.||.+++|+|+..+++++++.+|..+++++++.+++.++.+++|.|+|++|.+.+...+
T Consensus 86 ---~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 86 ---KRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred ---ccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 3556689999999999999999999999999999999999999999999999999999999999999887655
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=4.9e-28 Score=158.29 Aligned_cols=147 Identities=28% Similarity=0.471 Sum_probs=133.1
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCC
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKS 91 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 91 (166)
+..+..++..+|..+|.+++|+|+..++..+++.+|..+ +..++..++..+|.+++|.|++.+|+.++...........
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~-t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP-TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 456778999999999999999999999999999999999 9999999999999999999999999999988732211100
Q ss_pred ccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 92 KSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 92 ~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
...+.++.+|+.+|.+++|+|+.+||++++..+|...+.+++..+++.+|.|++|.|+|++|+.++..
T Consensus 82 ---~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ---ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ---ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 23458999999999999999999999999999999999999999999999999999999999999875
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=5.4e-25 Score=145.07 Aligned_cols=148 Identities=20% Similarity=0.354 Sum_probs=133.8
Q ss_pred CCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccC
Q 031051 10 PRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANS 89 (166)
Q Consensus 10 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 89 (166)
..++.++.++..+|..+|.+++|.|+..+|..++..++... +...+..++..+|.+++|.|+|.+|..++....
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~-~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~----- 83 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEP-KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL----- 83 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh-----
Confidence 45667888999999999999999999999999999988777 888999999999999999999999999887652
Q ss_pred CCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhhc
Q 031051 90 KSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDTV 165 (166)
Q Consensus 90 ~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 165 (166)
........++.+|+.+|.+++|+|+..||..++..+|..++..++..++..++.+++|.|++++|..++..+|+
T Consensus 84 --~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 84 --GERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred --cCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 11223467899999999999999999999999999999999999999999999999999999999999998885
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.3e-25 Score=138.17 Aligned_cols=145 Identities=21% Similarity=0.386 Sum_probs=134.7
Q ss_pred CCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCC
Q 031051 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSK 90 (166)
Q Consensus 11 ~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 90 (166)
..+.+...++..|..+|++++|+|..+||...++++|+.+ .++++..++..+|..+.|.|+|++|...+...+
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~-~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~------ 99 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEP-KKEEILKLLADVDKEGSGKITFEDFRRVMTVKL------ 99 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCc-chHHHHHHHHhhhhccCceechHHHHHHHHHHH------
Confidence 3446668999999999999999999999999999999999 999999999999999999999999999987773
Q ss_pred CccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 031051 91 SKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVD 163 (166)
Q Consensus 91 ~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 163 (166)
......+.++.+|+.+|.+++|.|+..+|+.+.+++|.+++++++.+++..+|.+++|.|+.+||..+++..
T Consensus 100 -~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 100 -GERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred -hccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 344467899999999999999999999999999999999999999999999999999999999999998764
No 5
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.92 E-value=5.6e-24 Score=131.37 Aligned_cols=144 Identities=17% Similarity=0.295 Sum_probs=129.3
Q ss_pred CCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCC--CCCcccHHHHHHHHHHHhcccc
Q 031051 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFN--KDGYVEYDEFERVLDLEYGKAN 88 (166)
Q Consensus 11 ~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~ 88 (166)
.++.+..+++++|..||..++|.|+..+...+|+.+|.+| ++.++.+....++.+ .-.+|+|++|+.+++.+..+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP-T~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn-- 81 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP-TNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN-- 81 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC-cHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc--
Confidence 4567789999999999999999999999999999999999 999999999988776 45789999999999998433
Q ss_pred CCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 89 SKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
......+.+...++.+|++++|+|...|++++|..+|..++++|++.+++.. .|.+|.|+|+.|++.+.
T Consensus 82 ---k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 82 ---KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred ---cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 3344567889999999999999999999999999999999999999999985 47789999999998765
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.92 E-value=2e-23 Score=136.22 Aligned_cols=143 Identities=23% Similarity=0.448 Sum_probs=128.3
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCC
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKS 91 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 91 (166)
+..++..+...|..+|.+++|.|+.++|..++..++..+ ..+.+..++..+|.+++|.|+|++|+.++.....
T Consensus 6 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~------ 78 (149)
T PTZ00184 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTLMARKMK------ 78 (149)
T ss_pred CHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC-CHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc------
Confidence 446778899999999999999999999999999988877 8889999999999999999999999999876521
Q ss_pred ccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 92 KSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 92 ~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
.......+..+|+.+|.+++|+|+.+++..++..+|..++.+++..++..+|.+++|.|+|.+|..++..
T Consensus 79 -~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 79 -DTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred -CCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 1123467899999999999999999999999999999999999999999999999999999999998864
No 7
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.90 E-value=2.6e-22 Score=133.37 Aligned_cols=134 Identities=20% Similarity=0.332 Sum_probs=126.7
Q ss_pred chhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccC
Q 031051 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSN 94 (166)
Q Consensus 15 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 94 (166)
....+...|...|.+++|.|+.+|++..|......+.+.+.++.|+..+|.+.+|+|++.||..+|..+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i----------- 123 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI----------- 123 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-----------
Confidence 345889999999999999999999999999888888799999999999999999999999999999999
Q ss_pred CcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 95 GGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 95 ~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
..++.+|+.+|.|++|+|+..||+++|..+|..++++-.+.++++++.-.+|.|.+++|+.++..
T Consensus 124 ---~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 124 ---NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred ---HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999877999999999998853
No 8
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.89 E-value=1.3e-21 Score=122.88 Aligned_cols=138 Identities=22% Similarity=0.434 Sum_probs=128.8
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCC
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKS 91 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 91 (166)
.+.|+.+++++|..+|++++|.|..++++.++.++|... +.+++..|+... .|-|+|--|+.++...+
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~-~d~elDaM~~Ea----~gPINft~FLTmfGekL------- 94 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIA-SDEELDAMMKEA----PGPINFTVFLTMFGEKL------- 94 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHhC----CCCeeHHHHHHHHHHHh-------
Confidence 567999999999999999999999999999999999998 999999999865 57899999999998874
Q ss_pred ccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 92 KSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 92 ~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
......+.+..+|+.||.+++|.|..+.++.+|...|..+++++++.+++.+-.+..|.|+|..|...++
T Consensus 95 ~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 95 NGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred cCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 4455578899999999999999999999999999999999999999999999999999999999999987
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.85 E-value=6.7e-20 Score=122.06 Aligned_cols=143 Identities=22% Similarity=0.357 Sum_probs=118.8
Q ss_pred CCCCchhhHHHHHHHhCCC-CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHHHhcccc
Q 031051 11 RDAAKPSRLKPAFDVIDAD-RDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGY-VEYDEFERVLDLEYGKAN 88 (166)
Q Consensus 11 ~~~~~~~~l~~~f~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~ 88 (166)
-+..++..|...|.++|.+ ++|+|+.+||..+.. +. .+.....++..++.+++|. |+|.+|+..+...
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~----~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f----- 96 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LA----LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVF----- 96 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-Hh----cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhh-----
Confidence 3456888999999999999 999999999999993 22 4556678888888888887 9999999999888
Q ss_pred CCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCC--HH----HHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 89 SKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA-GFAAT--DD----DIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~s--~~----~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
.........++.+|+.||.+++|.|+.+|+.+++..+ |...+ ++ .++.++..+|.+++|+|+++||.+++.
T Consensus 97 --~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 97 --SPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred --cCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 2333344689999999999999999999999999985 54444 43 366677889999999999999999998
Q ss_pred hhhc
Q 031051 162 VDTV 165 (166)
Q Consensus 162 ~~~~ 165 (166)
+.|.
T Consensus 175 ~~P~ 178 (187)
T KOG0034|consen 175 KQPD 178 (187)
T ss_pred cCcc
Confidence 8763
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-18 Score=116.34 Aligned_cols=145 Identities=14% Similarity=0.285 Sum_probs=121.3
Q ss_pred CCCchhhHHHHHHHhCC-CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCC
Q 031051 12 DAAKPSRLKPAFDVIDA-DRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSK 90 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 90 (166)
+.....+++.+++.+=. .++|.++.++|+.++.......-...-...+|+.+|.+++|.|+|.||+..+...
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~------- 93 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT------- 93 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-------
Confidence 45566788888888844 5699999999999999988744266677789999999999999999999999888
Q ss_pred CccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc----CC-------CCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 031051 91 SKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA----GF-------AATDDDIKAMIRLGGGDENDGVSFDGLLKI 159 (166)
Q Consensus 91 ~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~----~~-------~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~ 159 (166)
......+.++.+|++||.+++|+|+..|+-.++... |. ...++-+..+|+.+|.|++|.||++||...
T Consensus 94 -~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~ 172 (193)
T KOG0044|consen 94 -SRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEG 172 (193)
T ss_pred -cCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence 445556778888999999999999999999998873 32 123456888999999999999999999998
Q ss_pred HHhhh
Q 031051 160 LAVDT 164 (166)
Q Consensus 160 ~~~~~ 164 (166)
+..+|
T Consensus 173 ~~~d~ 177 (193)
T KOG0044|consen 173 CKADP 177 (193)
T ss_pred hhhCH
Confidence 87765
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.81 E-value=1.4e-18 Score=125.15 Aligned_cols=141 Identities=21% Similarity=0.359 Sum_probs=129.5
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCC
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKS 91 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 91 (166)
.+....+++.+|..+|.+++|.++..++.+.+..+....+.......++...|.+.||.|+|.||..++...
T Consensus 9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-------- 80 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-------- 80 (463)
T ss_pred cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh--------
Confidence 334455889999999999999999999999999887774377777889999999999999999999999888
Q ss_pred ccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhhc
Q 031051 92 KSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDTV 165 (166)
Q Consensus 92 ~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 165 (166)
+..+..+|...|.+.+|.|..+|+.+.++.+|.+++.+++..+++.+|.++++.|+++||.+++...|.
T Consensus 81 -----E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 81 -----ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred -----HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 688999999999999999999999999999999999999999999999999999999999999988774
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=9.1e-15 Score=102.84 Aligned_cols=141 Identities=21% Similarity=0.286 Sum_probs=114.3
Q ss_pred chhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccC
Q 031051 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSN 94 (166)
Q Consensus 15 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 94 (166)
.+.+-++.|+..|.+++|.++.+||..+|..-....+..-.+..-+...|+|+||.|+++||+.=+.....+... ..
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~e---pe 237 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEE---PE 237 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCC---cc
Confidence 445668899999999999999999999997544444355566677788999999999999999888766332111 12
Q ss_pred CcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 031051 95 GGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLK 158 (166)
Q Consensus 95 ~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~ 158 (166)
.....-.+.+..+|+|++|+++.+|+++.+...+....+.+...|+...|.|++|++|++|-+.
T Consensus 238 Wv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 238 WVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 2233345677999999999999999999999988888999999999999999999999999764
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.58 E-value=3.4e-14 Score=110.19 Aligned_cols=120 Identities=20% Similarity=0.389 Sum_probs=100.6
Q ss_pred CCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcC-CCCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHHHHhc
Q 031051 10 PRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRR-ASEEDGDV---IGTMISVADFNKDGYVEYDEFERVLDLEYG 85 (166)
Q Consensus 10 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 85 (166)
..+..++.++++.|..+|++++|.+ +..+++.+| ..+ +..+ +..++..+|.+++|.|+++||+.++...
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~p-te~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-- 208 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDP-VETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-- 208 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh--
Confidence 4456788899999999999999997 899999998 466 6665 8999999999999999999999999865
Q ss_pred cccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHH-------------cCCCCCH-HHHHHHHHh
Q 031051 86 KANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNC-------------AGFAATD-DDIKAMIRL 142 (166)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~-------------~~~~~s~-~~~~~~~~~ 142 (166)
......+.++.+|+.+|++++|+|+.+||++++.. +|..++. +++..+++.
T Consensus 209 ------g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 209 ------GNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred ------ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 22345677999999999999999999999999998 5555655 566666654
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.54 E-value=4.2e-14 Score=83.61 Aligned_cols=65 Identities=9% Similarity=0.229 Sum_probs=60.8
Q ss_pred cHHHHHHHhhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 98 GLMEDVFKVMDK-DGDGRLSHGDLKSYMNC-AGFAATD-DDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 98 ~~~~~~F~~~D~-~~~g~I~~~e~~~~l~~-~~~~~s~-~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
..++.+|+.||. +++|+|+.+||++++.. +|..++. ++++.+++.+|.|++|.|+|+||..++..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 567899999999 99999999999999998 8888888 99999999999999999999999998864
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.51 E-value=1.1e-13 Score=77.97 Aligned_cols=62 Identities=31% Similarity=0.569 Sum_probs=54.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHH----HHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 99 LMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDD----IKAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 99 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~----~~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
.++.+|+.+|.+++|+|+.+||+.++..++...++.+ ++.+++.+|.|++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3688999999999999999999999999987665554 4555999999999999999999875
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.47 E-value=1.4e-12 Score=85.32 Aligned_cols=103 Identities=22% Similarity=0.289 Sum_probs=91.5
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC
Q 031051 52 DGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAA 131 (166)
Q Consensus 52 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~ 131 (166)
...++..+|..+|.+++|.|+-.++-.++..+ ........+..++..+|.+++|.|+..+|..++...+...
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l--------g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~ 77 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSL--------GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEK 77 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc--------CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccc
Confidence 34667889999999999999999999999988 5556678999999999999999999999999999865433
Q ss_pred -----CHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 132 -----TDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 132 -----s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
+.+++.++|+.+|.+++|.|++.|+..++..
T Consensus 78 ~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 78 TDEEASSEELKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred ccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 3559999999999999999999999999875
No 17
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3.2e-13 Score=95.17 Aligned_cols=148 Identities=19% Similarity=0.237 Sum_probs=115.9
Q ss_pred CchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccC----
Q 031051 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANS---- 89 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~---- 89 (166)
.....+..++..+|.+++|.|+..|+..++....... ...++..-+..+|.+.||.|+|+++.............
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~-v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKY-VVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 4566889999999999999999999999998754444 56677778888999999999999999887654210000
Q ss_pred --CCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 90 --KSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA-GFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 90 --~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
..........-+..|+..|.|++|.++.+||..++.+- ...+.+-.|.+.+...|.|++|.|+++||+.-+..
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 00111122345678999999999999999999998864 34566777889999999999999999999976644
No 18
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.46 E-value=4.6e-13 Score=79.27 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=61.4
Q ss_pred cHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 98 GLMEDVFKVMD-KDGDG-RLSHGDLKSYMNC-----AGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 98 ~~~~~~F~~~D-~~~~g-~I~~~e~~~~l~~-----~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
..++.+|+.|| .+++| +|+.+||+.+|.. +|...++++++.+++.+|.|++|+|+|++|+.++..-.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 56789999998 79999 5999999999999 88889999999999999999999999999999887543
No 19
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.45 E-value=1e-12 Score=87.98 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=81.2
Q ss_pred chhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccC
Q 031051 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSN 94 (166)
Q Consensus 15 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 94 (166)
-+..++.+|+.+|.|++|.|+..||+++|..+|..+ +......++++||..+.|.|.|++|++++..+
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L-spq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L----------- 189 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRL-SPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL----------- 189 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCC-CHHHHHHHHHHhccccCCceeHHHHHHHHHHH-----------
Confidence 456778899999999999999999999999999999 99999999999998879999999999999988
Q ss_pred CcccHHHHHHHhhCCCCCCcccH
Q 031051 95 GGGGLMEDVFKVMDKDGDGRLSH 117 (166)
Q Consensus 95 ~~~~~~~~~F~~~D~~~~g~I~~ 117 (166)
..+-.+|+.+|.+..|.|+.
T Consensus 190 ---~~lt~~Fr~~D~~q~G~i~~ 209 (221)
T KOG0037|consen 190 ---QRLTEAFRRRDTAQQGSITI 209 (221)
T ss_pred ---HHHHHHHHHhccccceeEEE
Confidence 78889999999999998654
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.43 E-value=2e-12 Score=94.63 Aligned_cols=148 Identities=19% Similarity=0.222 Sum_probs=109.7
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhc-CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhcccc-C
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGR-RASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKAN-S 89 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-~ 89 (166)
..+....++..|+++|..++|+|+..++..++..+ +.++ ++...--.....+.+|.|.|......+..-..... .
T Consensus 459 l~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~L---PWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~ 535 (631)
T KOG0377|consen 459 LRSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNL---PWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAG 535 (631)
T ss_pred HHhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCC---cHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHH
Confidence 34556688999999999999999999999998853 3333 22221222334566788998888777654311100 0
Q ss_pred ---CCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 90 ---KSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA----GFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 90 ---~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~----~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
.......+..+..+|+.+|.|++|.|+.+||+++++-+ ...++..++.++.+.+|-|+||.|+++||+..+..
T Consensus 536 ~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 536 SSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 00111234568899999999999999999999999875 45678999999999999999999999999988864
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.42 E-value=1.4e-12 Score=77.17 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=62.7
Q ss_pred CchhhHHHHHHHhCC-CCCCcccHHHHHHHHHh-cCCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 14 AKPSRLKPAFDVIDA-DRDGKISRDDLRAFYAG-RRASEEDG-DVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..+..+..+|+.||. +++|+|+..||+.++.. ++... +. +++..++..+|.++||.|+|+||+.++..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l-s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL-KDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc-cCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 346688999999999 99999999999999998 77655 66 899999999999999999999999999877
No 22
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.41 E-value=2e-12 Score=81.18 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=83.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHH
Q 031051 56 IGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA-GFAATDD 134 (166)
Q Consensus 56 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~s~~ 134 (166)
-+.+...+..+|.|.++|++|+.++.....+ .+..-.+..+|+.||-++++.|...++...+..+ ..++|++
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~-------APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~e 145 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEM-------APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDE 145 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhh-------ChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHH
Confidence 3456677778999999999999999888322 2234456789999999999999999999999986 4568888
Q ss_pred HH----HHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 135 DI----KAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 135 ~~----~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
++ +.+++.+|.+++|++++.+|..++..-|
T Consensus 146 Ev~~i~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 146 EVELICEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 75 4566779999999999999999987654
No 23
>PTZ00183 centrin; Provisional
Probab=99.40 E-value=1.3e-11 Score=81.08 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=86.3
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCC
Q 031051 52 DGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA-GFA 130 (166)
Q Consensus 52 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~ 130 (166)
...++..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+..+|..++... ...
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~--------g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSL--------GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh--------CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 34566778889999999999999999999766 112234578999999999999999999999988764 344
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 131 ATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 131 ~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
.....+..+|+.+|.+++|.|++++|..++..
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 56778999999999999999999999998864
No 24
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.40 E-value=3.9e-12 Score=85.15 Aligned_cols=112 Identities=17% Similarity=0.286 Sum_probs=93.5
Q ss_pred CchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccC---C
Q 031051 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANS---K 90 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~---~ 90 (166)
......+.+|+.+|.+++|.|+..||...|..+..+. ..+.+...|..||.+++|.|+++|++.++...+..... .
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt-~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT-LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc-HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC
Confidence 4445668899999999999999999998888766666 77777788999999999999999999999888765443 1
Q ss_pred CccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031051 91 SKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNC 126 (166)
Q Consensus 91 ~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~ 126 (166)
.......+....+|..+|.|++|.||.+||......
T Consensus 140 ~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 140 EDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 224445678889999999999999999999888765
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.39 E-value=2.5e-12 Score=72.33 Aligned_cols=63 Identities=32% Similarity=0.510 Sum_probs=54.9
Q ss_pred hHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCC---CHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEE---DGDVIGTMISVADFNKDGYVEYDEFERVL 80 (166)
Q Consensus 18 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 80 (166)
.++++|..+|.+++|+|+.+||..++..++.... ..+.+..++..+|.+++|.|+|.||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4788999999999999999999999999876541 45566677999999999999999999874
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.38 E-value=3.7e-12 Score=75.40 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=59.1
Q ss_pred cHHHHHHHhhCC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 98 GLMEDVFKVMDK-DG-DGRLSHGDLKSYMNC---AGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 98 ~~~~~~F~~~D~-~~-~g~I~~~e~~~~l~~---~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
..+..+|..||. ++ +|+|+.+||++++.. +|..+++++++++++.+|.|++|+|+|+||+.++..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 456889999998 67 899999999999973 689999999999999999999999999999998865
No 27
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.37 E-value=3.5e-12 Score=76.74 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=60.7
Q ss_pred cHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhhc
Q 031051 98 GLMEDVFKVMDK-DG-DGRLSHGDLKSYMNC-----AGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDTV 165 (166)
Q Consensus 98 ~~~~~~F~~~D~-~~-~g~I~~~e~~~~l~~-----~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 165 (166)
..++.+|..+|. ++ +|.|+.+|++.++.. +|...++++++.++..+|.+++|.|+|++|+.++....|
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 568899999997 87 799999999999986 466789999999999999999999999999998876544
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.34 E-value=1.3e-11 Score=73.03 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=62.5
Q ss_pred CchhhHHHHHHHhC-CCCCC-cccHHHHHHHHHh-----cCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 14 AKPSRLKPAFDVID-ADRDG-KISRDDLRAFYAG-----RRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 14 ~~~~~l~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..+..+.++|+.+| .+++| +|+..+|+.+|+. ++..+ +.+++..++..+|.+++|.|+|.+|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~-~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK-EQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC-CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34568899999998 79999 5999999999998 77777 89999999999999999999999999998776
No 29
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.33 E-value=5.7e-11 Score=77.05 Aligned_cols=100 Identities=15% Similarity=0.307 Sum_probs=87.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCC
Q 031051 54 DVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA-GFAAT 132 (166)
Q Consensus 54 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~s 132 (166)
.++...|..+|.+++|.|++.++..++..+ +.......+..+|..+|. +.+.|+..+|..++... .-.-+
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~l--------g~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSL--------GFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHc--------CCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCc
Confidence 345667788899999999999999999876 556667889999999999 99999999999999975 45567
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 133 DDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 133 ~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
.+++...|+.+|.|++|.|+..++...+..
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 899999999999999999999999998864
No 30
>PTZ00184 calmodulin; Provisional
Probab=99.32 E-value=8e-11 Score=76.51 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCC
Q 031051 53 GDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA-GFAA 131 (166)
Q Consensus 53 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~ 131 (166)
.+.+...|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+.++|..++... ....
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~--------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSL--------GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh--------CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 3456678888999999999999999988665 222234688999999999999999999999998864 3345
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 132 TDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 132 s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
....+..+|+.+|.+++|.|+.++|..++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 5677899999999999999999999988753
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.31 E-value=1.7e-11 Score=73.52 Aligned_cols=65 Identities=18% Similarity=0.352 Sum_probs=56.4
Q ss_pred cHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 98 GLMEDVFKVMD-KDGDG-RLSHGDLKSYMNC-A----GFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 98 ~~~~~~F~~~D-~~~~g-~I~~~e~~~~l~~-~----~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
..++.+|..|| .+++| +|+.+||+.++.. + +...++.+++.+++.+|.|++|.|+|+||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 45788999999 78998 5999999999976 3 33457789999999999999999999999998864
No 32
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.30 E-value=1.9e-11 Score=68.79 Aligned_cols=63 Identities=16% Similarity=0.397 Sum_probs=57.3
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhhc
Q 031051 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDTV 165 (166)
Q Consensus 101 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 165 (166)
+.+|..+|.+++|.|+.+|++.++..+| .+.+++..+++.++.+++|.|++.+|+.++..-++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999987 48889999999999999999999999998876443
No 33
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.30 E-value=1.7e-11 Score=73.47 Aligned_cols=65 Identities=20% Similarity=0.385 Sum_probs=58.0
Q ss_pred cHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 98 GLMEDVFKVMD-KDGDG-RLSHGDLKSYMNC-AG----FAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 98 ~~~~~~F~~~D-~~~~g-~I~~~e~~~~l~~-~~----~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
..++.+|..|| .+++| .|+..||+.++.. +| ...++++++.+++.+|.+++|.|+|++|+.++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 56899999997 99999 5999999999985 44 3468899999999999999999999999998865
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.28 E-value=2.3e-11 Score=65.56 Aligned_cols=52 Identities=15% Similarity=0.425 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 111 GDGRLSHGDLKSYMNCAGFA-ATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 111 ~~g~I~~~e~~~~l~~~~~~-~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
.+|.|+.++|+.++..+|.. ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36999999999999888999 99999999999999999999999999999863
No 35
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.26 E-value=1.4e-10 Score=95.19 Aligned_cols=142 Identities=12% Similarity=0.255 Sum_probs=115.0
Q ss_pred CCCCCCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCC------CHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 031051 6 TALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEE------DGDVIGTMISVADFNKDGYVEYDEFERV 79 (166)
Q Consensus 6 ~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~------~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 79 (166)
+.....+..++.++..+|..||++.+|.++..+|..+|+++|++.| ..+++..++..+|++.+|.|+..+|+.+
T Consensus 2242 rn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~af 2321 (2399)
T KOG0040|consen 2242 RNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAF 2321 (2399)
T ss_pred hccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHH
Confidence 4455678889999999999999999999999999999999999875 3458999999999999999999999999
Q ss_pred HHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----hcC----CCCCcc
Q 031051 80 LDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL----GGG----DENDGV 151 (166)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~----~d~----~~~g~i 151 (166)
+... +...-.....+..+|+.+|. +..||+..++.+. +++++++-++.. +++ ...+.+
T Consensus 2322 mi~~------ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l 2387 (2399)
T KOG0040|consen 2322 MISK------ETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVAL 2387 (2399)
T ss_pred HHhc------ccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccc
Confidence 9877 33333445689999999999 7889999888654 566666666554 332 234569
Q ss_pred cHHHHHHHHH
Q 031051 152 SFDGLLKILA 161 (166)
Q Consensus 152 ~~~eF~~~~~ 161 (166)
.|.+|+.-+.
T Consensus 2388 ~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2388 DYKDFVNSLF 2397 (2399)
T ss_pred cHHHHHHHHh
Confidence 9999987654
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.24 E-value=7.1e-11 Score=71.35 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=59.4
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
....++.+|..+|.+++|.|+.+|++.++...| ++++++..++..+|.+++|.|++++|+.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 346789999999999999999999999999976 78899999999999999999999999988753
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.23 E-value=5.9e-11 Score=70.57 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=58.4
Q ss_pred ccHHHHHHHhhCC--CCCCcccHHHHHHHHHH-cCCCC----CHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 97 GGLMEDVFKVMDK--DGDGRLSHGDLKSYMNC-AGFAA----TDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 97 ~~~~~~~F~~~D~--~~~g~I~~~e~~~~l~~-~~~~~----s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
...++.+|..+|. +++|+|+.+|+..++.. +|..+ +.+++..++..++.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3568899999999 89999999999999986 55444 5899999999999999999999999998865
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.22 E-value=1.3e-10 Score=69.62 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=59.4
Q ss_pred CchhhHHHHHHHhC-CCCCC-cccHHHHHHHHHhc-----CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 14 AKPSRLKPAFDVID-ADRDG-KISRDDLRAFYAGR-----RASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 14 ~~~~~l~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..+..+.++|+.|| .+++| +|+..||+.++... .... +..++..++..+|.+++|.|+|.||+.++..+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~-~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQK-DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccccc-CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45667888999998 78998 59999999999762 2334 77899999999999999999999999999877
No 39
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.22 E-value=9.8e-11 Score=70.73 Aligned_cols=69 Identities=17% Similarity=0.388 Sum_probs=63.0
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
++.++..+..+|..+|.+++|.|+.+++..+++.++ . +.+++..++..+|.+++|.|+|++|+.++...
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--L-PQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 456788999999999999999999999999999864 4 78899999999999999999999999999776
No 40
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.21 E-value=2.4e-10 Score=76.48 Aligned_cols=108 Identities=17% Similarity=0.370 Sum_probs=88.5
Q ss_pred HHHHHHHhCCCCCCc-ccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcc
Q 031051 19 LKPAFDVIDADRDGK-ISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGG 97 (166)
Q Consensus 19 l~~~f~~~D~~~~g~-i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 97 (166)
..+++..++.+++|. |+.++|...+............+.-.|..||.+++|.|+.+|+..++.......... ......
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~ 146 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLE 146 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHH
Confidence 356788899988888 999999999987766552344888899999999999999999999999885433222 334445
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHc
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCA 127 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~ 127 (166)
..+...|..+|.+++|.|+.+|+..++...
T Consensus 147 ~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 147 DIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 667899999999999999999999998765
No 41
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.21 E-value=1.6e-10 Score=69.19 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=59.7
Q ss_pred chhhHHHHHHHhC-CCCCCc-ccHHHHHHHHHh-cC----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 15 KPSRLKPAFDVID-ADRDGK-ISRDDLRAFYAG-RR----ASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 15 ~~~~l~~~f~~~D-~~~~g~-i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
.+..+.++|+.+| .+++|+ |+..|++.+++. ++ ..+ +.+++..++..+|.+++|.|+|.+|+.++..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~-s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQK-DADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4567899999997 999995 999999999985 43 344 88999999999999999999999999998776
No 42
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.20 E-value=1.5e-10 Score=69.66 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=60.0
Q ss_pred chhhHHHHHHHhCC-CC-CCcccHHHHHHHHHh-----cCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 15 KPSRLKPAFDVIDA-DR-DGKISRDDLRAFYAG-----RRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 15 ~~~~l~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
....++.+|..+|. ++ +|.|+..||..++.. ++..+ +.+++..++..+|.+++|.|+|.+|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~-s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQK-DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccc-cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45678999999997 87 699999999999986 45566 88999999999999999999999999988765
No 43
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.20 E-value=1.6e-10 Score=63.64 Aligned_cols=61 Identities=30% Similarity=0.642 Sum_probs=57.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 100 ~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5778999999999999999999999999999999999999999999999999999999876
No 44
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.19 E-value=2.2e-10 Score=67.83 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=60.9
Q ss_pred CchhhHHHHHHHhCC-CC-CCcccHHHHHHHHH---hcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 14 AKPSRLKPAFDVIDA-DR-DGKISRDDLRAFYA---GRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
+.+..+-.+|++||. ++ +|+|+.+||+.++. .+|... +.+++..++..+|.+++|.|+|.||+.++..+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~-t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL-QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 455678889999997 66 89999999999997 356666 99999999999999999999999999999876
No 45
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.18 E-value=2.3e-10 Score=67.86 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=56.3
Q ss_pred cHHHHHHHh-hCCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 98 GLMEDVFKV-MDKDGDG-RLSHGDLKSYMNCA-----GFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 98 ~~~~~~F~~-~D~~~~g-~I~~~e~~~~l~~~-----~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
..+..+|.. .|.+++| +|+.+||+.++... +...++.+++.+++.+|.|++|.|+|+||+.++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 567899988 6787876 99999999999975 34567889999999999999999999999988754
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=99.17 E-value=6.1e-10 Score=86.94 Aligned_cols=123 Identities=13% Similarity=0.216 Sum_probs=89.8
Q ss_pred CcccHHHHHHHHHh--cCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCC
Q 031051 32 GKISRDDLRAFYAG--RRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDK 109 (166)
Q Consensus 32 g~i~~~e~~~~l~~--~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~ 109 (166)
..++.+++...... ..+.....+++...|..+|++++|.+ +-.++..+- . ..........+..+|+.+|.
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG-~---~~pte~e~~fi~~mf~~~D~ 190 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCS-I---EDPVETERSFARRILAIVDY 190 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhC-C---CCCCHHHHHHHHHHHHHhCC
Confidence 35666766655432 11111134566778889999999986 444444330 0 00011111237999999999
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 110 DGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 110 ~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
+++|.|+.+||..++..++...+++++..+|+.+|.|++|.|+++||..++..
T Consensus 191 DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 191 DEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999999999988889999999999999999999999999999876
No 47
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.17 E-value=3.3e-10 Score=83.04 Aligned_cols=133 Identities=11% Similarity=0.182 Sum_probs=100.6
Q ss_pred hhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCC--CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccC
Q 031051 17 SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEE--DGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSN 94 (166)
Q Consensus 17 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 94 (166)
+-++.-|..+|+..+|.|+..+|..+|-....... ....+..+-..++.. +..|++.||..++..+
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl----------- 385 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFL----------- 385 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHH-----------
Confidence 34556688889888899999999988875543321 222455666666554 4569999998888766
Q ss_pred CcccHHHHHHHhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 95 GGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNC-AGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 95 ~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~-~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
.....+..+...|-..+ +.|+..+|+++... .|.++|+..++-+|+.+|.|+||.|+++||+..|..
T Consensus 386 ~~l~dfd~Al~fy~~Ag-~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 386 NNLNDFDIALRFYHMAG-ASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred hhhhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 12345556666665444 68999999999885 699999999999999999999999999999999864
No 48
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1.3e-09 Score=69.70 Aligned_cols=101 Identities=19% Similarity=0.288 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHH-cCCCC
Q 031051 53 GDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNC-AGFAA 131 (166)
Q Consensus 53 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~-~~~~~ 131 (166)
..++...|..++.+++|.|++.|+...+..+ .-......+..+..-+|++++|.|+.++|++++.. ++..-
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmral--------GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRAL--------GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHc--------CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 4567778899999999999999997777666 44455678899999999999999999999999885 67778
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 132 TDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 132 s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
+.+++..+|+.+|.+++|+||..+|.....
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAK 133 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHH
Confidence 999999999999999999999999987653
No 49
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.14 E-value=2.9e-10 Score=61.22 Aligned_cols=52 Identities=25% Similarity=0.510 Sum_probs=48.4
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 031051 30 RDGKISRDDLRAFYAGRRAS-EEDGDVIGTMISVADFNKDGYVEYDEFERVLDL 82 (166)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 82 (166)
++|.|+.++|..+|..+|.. . +.+++..++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~-s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDL-SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSS-CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCC-CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888888 7 9999999999999999999999999999864
No 50
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=2.6e-10 Score=67.75 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=61.6
Q ss_pred CCchhhHHHHHHHhCC--CCCCcccHHHHHHHHHh-cCCCC---CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 13 AAKPSRLKPAFDVIDA--DRDGKISRDDLRAFYAG-RRASE---EDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 13 ~~~~~~l~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
+.++..+..+|..+|. +++|.|+..+|..+++. ++... .+..++..++..+|.+++|.|+|.+|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4567889999999999 89999999999999975 44322 158999999999999999999999999998776
No 51
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.13 E-value=4.5e-10 Score=63.12 Aligned_cols=61 Identities=31% Similarity=0.505 Sum_probs=55.6
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 20 KPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 20 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
+.+|..+|++++|.|+.+|+..++..++. +.+++..++..++.+++|.|+|.+|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~---~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL---PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC---CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998753 78889999999999999999999999998765
No 52
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.07 E-value=8.4e-10 Score=68.46 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=54.3
Q ss_pred ccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 97 GGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 97 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
...+..+|..+|.+++|+|+.+|+..+. + ...+..+..++..+|.|++|.||++||..++..
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 4668999999999999999999999876 2 245667889999999999999999999999843
No 53
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.07 E-value=8e-10 Score=65.54 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=57.1
Q ss_pred cHHHHHHHhhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 031051 98 GLMEDVFKVMDKD--GDGRLSHGDLKSYMN-CAGFAAT----DDDIKAMIRLGGGDENDGVSFDGLLKILAVD 163 (166)
Q Consensus 98 ~~~~~~F~~~D~~--~~g~I~~~e~~~~l~-~~~~~~s----~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 163 (166)
..+...|..|+.. ++|.|+.+||++++. .+|..++ +++++.++..+|.+++|.|+|++|+.++..-
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567899999866 479999999999997 5665566 8999999999999999999999999988753
No 54
>PF14658 EF-hand_9: EF-hand domain
Probab=99.06 E-value=1.2e-09 Score=60.12 Aligned_cols=61 Identities=21% Similarity=0.412 Sum_probs=57.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCCC-CcccHHHHHHHHHh
Q 031051 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGF-AATDDDIKAMIRLGGGDEN-DGVSFDGLLKILAV 162 (166)
Q Consensus 102 ~~F~~~D~~~~g~I~~~e~~~~l~~~~~-~~s~~~~~~~~~~~d~~~~-g~i~~~eF~~~~~~ 162 (166)
.+|.+||.+++|.|...++..+|+.++. ..++++++.+...+|.++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999988 8899999999999999987 99999999998864
No 55
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.06 E-value=1.7e-09 Score=59.42 Aligned_cols=61 Identities=33% Similarity=0.550 Sum_probs=56.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVL 80 (166)
Q Consensus 19 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 80 (166)
+..+|..+|.+++|.|+.+++..++..++... +.+.+..++..++.+++|.|++.+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL-SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC-CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999998777 89999999999999999999999998765
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.05 E-value=2.1e-09 Score=63.72 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=58.7
Q ss_pred CchhhHHHHHHH-hCCCCCC-cccHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 14 AKPSRLKPAFDV-IDADRDG-KISRDDLRAFYAGRRA----SEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 14 ~~~~~l~~~f~~-~D~~~~g-~i~~~e~~~~l~~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..+..+..+|+. +|.+++| +|+.+||+.++..... ......++..++..+|.++||.|+|+||+.++..+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456788999999 6788876 9999999999987532 12167899999999999999999999999998776
No 57
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=74.98 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=53.3
Q ss_pred CchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCC--CHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 031051 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEE--DGDVIGTMISVADFNKDGYVEYDEFERVLDL 82 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 82 (166)
.....+..+|.+.|.+.+|.|+..|++.++..--.... ..++-...|...|+++||.|+|+||..-+..
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 34557899999999999999999999999874211110 4445556778899999999999999765544
No 58
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.99 E-value=8.9e-09 Score=75.70 Aligned_cols=132 Identities=16% Similarity=0.245 Sum_probs=97.5
Q ss_pred hhHHHHHHHhCCCCCCcccHHHHHHHHH------hcCCCCC--------CHHHHH--HHHHhhcCCCCCcccHHHHHHHH
Q 031051 17 SRLKPAFDVIDADRDGKISRDDLRAFYA------GRRASEE--------DGDVIG--TMISVADFNKDGYVEYDEFERVL 80 (166)
Q Consensus 17 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~------~~~~~~~--------~~~~~~--~~~~~~d~~~~g~i~~~ef~~~~ 80 (166)
..++-+|+.+|.|++|.|+.+||..+.+ .++.... ...++. .....|..++++++++++|..++
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 4566789999999999999999988864 2222110 111222 23345678899999999999999
Q ss_pred HHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHH--HHHHHHHhhcCCCCCcccHHHHH
Q 031051 81 DLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAG-FAATDD--DIKAMIRLGGGDENDGVSFDGLL 157 (166)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~-~~~s~~--~~~~~~~~~d~~~~g~i~~~eF~ 157 (166)
..+ +.+.++..|..+|+..+|.|+..+|..++-... .+.... ....+-+.+..+ +..||++||.
T Consensus 313 e~L------------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~ 379 (489)
T KOG2643|consen 313 ENL------------QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFK 379 (489)
T ss_pred HHH------------HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHH
Confidence 998 467888999999999999999999999988753 333222 345555666655 4469999999
Q ss_pred HHHH
Q 031051 158 KILA 161 (166)
Q Consensus 158 ~~~~ 161 (166)
.++.
T Consensus 380 ~Ff~ 383 (489)
T KOG2643|consen 380 AFFR 383 (489)
T ss_pred HHHH
Confidence 8875
No 59
>PF14658 EF-hand_9: EF-hand domain
Probab=98.96 E-value=4.6e-09 Score=57.74 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=57.0
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCC-CCCCHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHH
Q 031051 22 AFDVIDADRDGKISRDDLRAFYAGRRA-SEEDGDVIGTMISVADFNKD-GYVEYDEFERVLDLE 83 (166)
Q Consensus 22 ~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~~ 83 (166)
.|..+|.++.|.+...++..+|++++. .+ .+.+++.+.+.+|+++. |.|+++.|+.++...
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p-~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSP-EESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCC-cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 689999999999999999999999999 66 99999999999999887 999999999998754
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.93 E-value=6.2e-09 Score=64.59 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=56.2
Q ss_pred CCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 13 AAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLD 81 (166)
Q Consensus 13 ~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 81 (166)
+.....+.-.|..+|.+++|.|+.+|+..+. ..+ ....+..++..+|.++||.|+++||..++.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~-~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDP-NEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccc-hHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4556678999999999999999999999876 234 677888999999999999999999999993
No 61
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.90 E-value=2.5e-08 Score=73.89 Aligned_cols=128 Identities=20% Similarity=0.351 Sum_probs=97.1
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhh----cCCCCCcccHHHHHHHHHHHhccccCCCccCC
Q 031051 20 KPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVA----DFNKDGYVEYDEFERVLDLEYGKANSKSKSNG 95 (166)
Q Consensus 20 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~----d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 95 (166)
...|-.+|.+++|.|+.+++...-.. .. +...+.+||.++ -...+|+++|.+|+.++... ....
T Consensus 281 y~kFweLD~Dhd~lidk~~L~ry~d~---tl-t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~--------e~k~ 348 (493)
T KOG2562|consen 281 YCKFWELDTDHDGLIDKEDLKRYGDH---TL-TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE--------EDKD 348 (493)
T ss_pred HHHHhhhccccccccCHHHHHHHhcc---ch-hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh--------ccCC
Confidence 34477789999999999999887543 22 677788888833 23458999999999999888 3344
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHHHHc-------C-CCCCHH-HHHHHHHhhcCCCCCcccHHHHHHH
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA-------G-FAATDD-DIKAMIRLGGGDENDGVSFDGLLKI 159 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-------~-~~~s~~-~~~~~~~~~d~~~~g~i~~~eF~~~ 159 (166)
....+...|+.+|.+++|.|+..|++-++... | ..++-+ -+.+++........++|++++|+..
T Consensus 349 t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 349 TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 45678999999999999999999999887752 2 223333 3556666676667889999999874
No 62
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.89 E-value=1.3e-08 Score=67.51 Aligned_cols=66 Identities=30% Similarity=0.320 Sum_probs=59.8
Q ss_pred ccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 97 GGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 97 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
.+.+..+|+.||.+.||+|+..|++.+|..+|.+-+---+..+++..|.|.+|+|++-+|+-++.+
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 477899999999999999999999999999997666667889999999999999999999987754
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.88 E-value=1.4e-08 Score=60.20 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=57.9
Q ss_pred CchhhHHHHHHHhCCC--CCCcccHHHHHHHHHh-cCCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 14 AKPSRLKPAFDVIDAD--RDGKISRDDLRAFYAG-RRASEED----GDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~--~~g~i~~~e~~~~l~~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..+..+-..|+.|+.. ++|.|+.+||+.++.. ++... + .+++..++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~-t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFL-KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhh-ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3456788899999865 5899999999999974 43333 4 8999999999999999999999999998766
No 64
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.84 E-value=1.2e-07 Score=69.57 Aligned_cols=127 Identities=19% Similarity=0.285 Sum_probs=101.7
Q ss_pred CchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCcc
Q 031051 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKS 93 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 93 (166)
..-.....+|...|.+++|.++.+||...+.. .+.++..+|...|.++||.|+..|....+... ..
T Consensus 48 ~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~--------gi 113 (463)
T KOG0036|consen 48 PNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL--------GI 113 (463)
T ss_pred CchHHHHHHHHhcccCcCCcccHHHHHHHHHH------hHHHHHHHHhhhccccCCccCHHHHHHHHHHh--------CC
Confidence 34456678899999999999999999999976 67778899999999999999999999999888 33
Q ss_pred CCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh------hcCCCCCcccHHHHHHH
Q 031051 94 NGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL------GGGDENDGVSFDGLLKI 159 (166)
Q Consensus 94 ~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~------~d~~~~g~i~~~eF~~~ 159 (166)
.-..+.+.+.|+..|+++++.|+.+|+++.+.-.. .+.++.++.. +|.+.+..|. ++|...
T Consensus 114 ~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p----~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~ 180 (463)
T KOG0036|consen 114 QLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP----ESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKL 180 (463)
T ss_pred ccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC----hhHHHHHHHhhhhheEEEccccccCC-cchHHH
Confidence 34457788899999999999999999999876543 4555555432 5666666666 555543
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.83 E-value=3.3e-08 Score=65.66 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=80.3
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCC
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKS 91 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 91 (166)
+..++..++.+|..||.+.+|+|+..|++.++..+|... +---+..|+..+|.+.+|+|+|.||+-++.....
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ-THL~lK~mikeVded~dgklSfreflLIfrkaaa------ 166 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ-THLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA------ 166 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCch-hhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc------
Confidence 456888999999999999999999999999999998866 6666778999999999999999999999988732
Q ss_pred ccCCcccHHHHHHHh--hCCCCCCcccHHHHHHH
Q 031051 92 KSNGGGGLMEDVFKV--MDKDGDGRLSHGDLKSY 123 (166)
Q Consensus 92 ~~~~~~~~~~~~F~~--~D~~~~g~I~~~e~~~~ 123 (166)
..-.....+..+=+. .|...-|......|-++
T Consensus 167 gEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 167 GELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred cccccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 111122333333333 67777777666665544
No 66
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.73 E-value=1.8e-07 Score=70.10 Aligned_cols=137 Identities=19% Similarity=0.328 Sum_probs=93.1
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCC
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRA-SEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSK 90 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 90 (166)
.+.++..+..-|...+.++.-+++.++|....-.+-. +....+.+..+....|...||.|+|.||+.+-..+.
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC------ 104 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC------ 104 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc------
Confidence 3344444444445557788889999999887655433 332555666666677888999999999998876663
Q ss_pred CccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 91 SKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGF------AATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 91 ~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~------~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
........+|..+|..+.|.+|.+++++++..+.. ++..+-+.. .+..+....++|.+|.+++.
T Consensus 105 ----~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh 174 (694)
T KOG0751|consen 105 ----APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLH 174 (694)
T ss_pred ----CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHH
Confidence 22566789999999999999999999999997532 222222222 23333445677777777664
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.69 E-value=1.9e-07 Score=54.99 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=53.6
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHH-c----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNC-A----GFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~-~----~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
..+..+|..|..+ .++++..||+.++.. + +..-.+..++.+++.+|.|+||.|+|+||+.++..
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4567899999844 569999999999975 3 44456788999999999999999999999988754
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.66 E-value=5.3e-08 Score=45.11 Aligned_cols=27 Identities=33% Similarity=0.765 Sum_probs=18.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031051 100 MEDVFKVMDKDGDGRLSHGDLKSYMNC 126 (166)
Q Consensus 100 ~~~~F~~~D~~~~g~I~~~e~~~~l~~ 126 (166)
++.+|+.+|.|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456677777777777777777766654
No 69
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.63 E-value=2.4e-07 Score=59.12 Aligned_cols=62 Identities=23% Similarity=0.468 Sum_probs=55.0
Q ss_pred ccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 97 GGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 97 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
...++.+|...|++++|.|..++++..+..+|...++++++.+++.. .|.|||.-|+.++-.
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGE 92 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999998875 357888888887743
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.62 E-value=6.6e-08 Score=44.79 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHh
Q 031051 19 LKPAFDVIDADRDGKISRDDLRAFYAG 45 (166)
Q Consensus 19 l~~~f~~~D~~~~g~i~~~e~~~~l~~ 45 (166)
++++|+.+|++++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566677777777777777777766654
No 71
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.62 E-value=4.3e-08 Score=69.70 Aligned_cols=123 Identities=12% Similarity=0.093 Sum_probs=94.8
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhh
Q 031051 28 ADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVM 107 (166)
Q Consensus 28 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 107 (166)
..+.+.|-..+|..-++ .+-...+..+|..||.+++|.++|.|.+..+..+. +.......++.+|+.|
T Consensus 238 ~~kg~~igi~efa~~l~-----vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc-------~p~~t~~iiq~afk~f 305 (412)
T KOG4666|consen 238 EAKGPDIGIVEFAVNLR-----VPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLC-------GPPVTPVIIQYAFKRF 305 (412)
T ss_pred hccCCCcceeEeeeeee-----cchhhhhhhhhheecCCCCCcccHHHHhhhheeee-------CCCCcHHHHHHHHHhc
Confidence 34455565555554443 22346678899999999999999999999888773 3344467889999999
Q ss_pred CCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 108 DKDGDGRLSHGDLKSYMNC-AGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 108 D~~~~g~I~~~e~~~~l~~-~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
+.+-||+++..+|.-+++. +| +..-.+--+|...+...+|+|++.+|.++...+|
T Consensus 306 ~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 306 SVAEDGISGEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ccccccccchHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 9999999999999999886 45 3333456688888888899999999999998765
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.62 E-value=6e-07 Score=52.91 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=55.9
Q ss_pred CchhhHHHHHHHhCCCCCCcccHHHHHHHHHh-c---CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAG-R---RASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~-~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..+..+-.+|+.|. .+.+.|+..||+.++.. + -........+..++...|.++||.|+|.||+.++..+
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34567788999997 45679999999999963 1 1122267889999999999999999999999999887
No 73
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.60 E-value=2.7e-07 Score=69.15 Aligned_cols=127 Identities=19% Similarity=0.229 Sum_probs=90.2
Q ss_pred hHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCc
Q 031051 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEE-----DGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSK 92 (166)
Q Consensus 18 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-----~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 92 (166)
..+.+|..+|..++|.++.+++.++..+...... ..+-+.. .+.....-.++|.+|.+++...
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~--------- 176 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEF--------- 176 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHH---------
Confidence 4566788888888888888888888876554321 3333333 3333344568888888888776
Q ss_pred cCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc-CCCCCcccHHHHHHH
Q 031051 93 SNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGG-GDENDGVSFDGLLKI 159 (166)
Q Consensus 93 ~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d-~~~~g~i~~~eF~~~ 159 (166)
..+.-+++|+..|+.++|.||.-++..++.....++....++..+-... ++..-++|+..|..+
T Consensus 177 ---~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 177 ---QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred ---HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHH
Confidence 3566889999999999999999999999998877777777777666544 334445666666543
No 74
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.54 E-value=4.1e-07 Score=57.56 Aligned_cols=105 Identities=21% Similarity=0.298 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccH
Q 031051 20 KPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGL 99 (166)
Q Consensus 20 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 99 (166)
+++...+..+|.|.++.++|..++.-+.-..+..-.+.-.|+.||-++|+.|.-++....+..+.+. ..........
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~---eLs~eEv~~i 150 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD---ELSDEEVELI 150 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc---cCCHHHHHHH
Confidence 4556778899999999999999988654433233344445678999999999999999999887221 1222223334
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHc
Q 031051 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCA 127 (166)
Q Consensus 100 ~~~~F~~~D~~~~g~I~~~e~~~~l~~~ 127 (166)
..++.+..|.+|+|.|+..||.+++.+.
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 5678888999999999999999998775
No 75
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=2.3e-06 Score=67.41 Aligned_cols=145 Identities=19% Similarity=0.302 Sum_probs=108.9
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhc------
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYG------ 85 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~------ 85 (166)
+......-...|..+ +.+.|+|+...-+.++-..+ + ....+..|++..|.|.||+++..||.-.+.-...
T Consensus 11 T~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~--L-P~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSG--L-PTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred chHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcC--C-ChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCc
Confidence 334444455556666 45789999999999986653 3 7788899999999999999999999766643221
Q ss_pred -------------------------------------------------------------------cc------cC---
Q 031051 86 -------------------------------------------------------------------KA------NS--- 89 (166)
Q Consensus 86 -------------------------------------------------------------------~~------~~--- 89 (166)
.. +.
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence 00 00
Q ss_pred --------------------CCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCC
Q 031051 90 --------------------KSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEND 149 (166)
Q Consensus 90 --------------------~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g 149 (166)
.......+...+..|+.+|+..+|++|...-+.+|-..+ ++...+..++..-|.|+||
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDG 244 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCC
Confidence 000001122467899999999999999999999998877 7888899999999999999
Q ss_pred cccHHHHHHHHHh
Q 031051 150 GVSFDGLLKILAV 162 (166)
Q Consensus 150 ~i~~~eF~~~~~~ 162 (166)
+++-+||+-.|..
T Consensus 245 kL~~dEfilam~l 257 (1118)
T KOG1029|consen 245 KLSADEFILAMHL 257 (1118)
T ss_pred cccHHHHHHHHHH
Confidence 9999999866543
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.50 E-value=2.4e-07 Score=43.70 Aligned_cols=30 Identities=33% Similarity=0.726 Sum_probs=25.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HcC
Q 031051 99 LMEDVFKVMDKDGDGRLSHGDLKSYMN-CAG 128 (166)
Q Consensus 99 ~~~~~F~~~D~~~~g~I~~~e~~~~l~-~~~ 128 (166)
.++.+|+.+|.+++|+|+.+||.+++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 565
No 77
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.48 E-value=1.2e-06 Score=53.36 Aligned_cols=64 Identities=16% Similarity=0.342 Sum_probs=55.9
Q ss_pred CcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 95 GGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 95 ~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
........+|...+. ++|.|+.++.+.++...| ++.+.+..++..+|.+++|+++.+||.-.|.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 345677899999985 689999999999999987 8889999999999999999999999997664
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.47 E-value=1.2e-06 Score=53.32 Aligned_cols=70 Identities=27% Similarity=0.528 Sum_probs=59.2
Q ss_pred CCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 10 PRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 10 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..++.+...+..+|...|+ ++|.|+..+...++...+ + ..+.+..||...|.+.+|.++++||+-.+.-.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L-~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--L-PRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--S-SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--C-CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4567888999999999986 589999999999998753 4 88999999999999999999999998877544
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.46 E-value=2.8e-07 Score=43.48 Aligned_cols=30 Identities=40% Similarity=0.609 Sum_probs=25.5
Q ss_pred hHHHHHHHhCCCCCCcccHHHHHHHHH-hcC
Q 031051 18 RLKPAFDVIDADRDGKISRDDLRAFYA-GRR 47 (166)
Q Consensus 18 ~l~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 47 (166)
+++.+|+.+|.+++|+|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 564
No 80
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.45 E-value=2.4e-06 Score=63.78 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=51.6
Q ss_pred CccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 91 SKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 91 ~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
.........++.+|+.+|.+++|.|+.+||.. ++.+|..+|.|++|.|+++||...+..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45566678899999999999999999999932 578999999999999999999998764
No 81
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.42 E-value=8e-06 Score=64.38 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=114.6
Q ss_pred CchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCcc
Q 031051 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKS 93 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 93 (166)
....++..+|...|++++|.++..+...++..+.... ....+..++...+..+++++...+|..+.....
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l-~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~--------- 202 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL-SESKARRLFKESDNSQTGKLEEEEFVKFRKELT--------- 202 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhh-hHHHHHHHHHHHHhhccceehHHHHHHHHHhhc---------
Confidence 4456788999999999999999999999999988877 788888888888888899999999999998771
Q ss_pred CCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCC----CCCcccHHHHHHHHHhhh
Q 031051 94 NGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAG--FAATDDDIKAMIRLGGGD----ENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 94 ~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~--~~~s~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~~~~ 164 (166)
....+...|..+-.+ .++++.+++..++...+ .+.+.+.++++++.+... ..+.++++.|..+|....
T Consensus 203 --~rpev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~ 276 (746)
T KOG0169|consen 203 --KRPEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPD 276 (746)
T ss_pred --cCchHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCcc
Confidence 123788889888765 78999999999999864 356888889998876443 346799999999997654
No 82
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.40 E-value=1.1e-05 Score=50.86 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=83.6
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCC--CCCcccHHHHHHHHHHcCC
Q 031051 52 DGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKD--GDGRLSHGDLKSYMNCAGF 129 (166)
Q Consensus 52 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~--~~g~I~~~e~~~~l~~~~~ 129 (166)
..+++..+|..||..+||.|++.+.-.++..+ ...+....+.++...++.+ +-..|+.++|--++..++.
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal--------G~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL--------GQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHh--------cCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 56788899999999999999999999999887 4445567788888888776 5567999998888887643
Q ss_pred ---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 130 ---AATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 130 ---~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
.-+-+++-+-++.+|..++|.|.+.|+.+.++.
T Consensus 81 nk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 81 NKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred ccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 345567777788899999999999999988864
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.40 E-value=1.7e-06 Score=44.95 Aligned_cols=47 Identities=6% Similarity=0.158 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 115 LSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 115 I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
++..|++.+++.+.+.++++.+..+|+.+|.+++|.+..+||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999875
No 84
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.33 E-value=1.9e-06 Score=63.99 Aligned_cols=69 Identities=32% Similarity=0.488 Sum_probs=59.9
Q ss_pred chhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRAS---EEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 15 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
....++.+|+.+|.+++|.|+.+||..++.-++.. ..+..++..+.+..|-++||.|++.||+..+.-.
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 45578899999999999999999999998855433 2288999999999999999999999999999766
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.27 E-value=1.5e-06 Score=38.74 Aligned_cols=25 Identities=32% Similarity=0.789 Sum_probs=17.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 031051 100 MEDVFKVMDKDGDGRLSHGDLKSYM 124 (166)
Q Consensus 100 ~~~~F~~~D~~~~g~I~~~e~~~~l 124 (166)
++.+|+.+|.|++|.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3567777777777777777777653
No 86
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.16 E-value=1.4e-05 Score=41.56 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=41.6
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 33 KISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 33 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
+++..|++.+|+.++... +..-+..+|..+|..++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~-~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEM-DDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCc-CHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 378899999999999998 99999999999999999999999999998765
No 87
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.15 E-value=3.9e-05 Score=57.44 Aligned_cols=144 Identities=14% Similarity=0.167 Sum_probs=89.8
Q ss_pred hhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCC-----C---------HHHHHHHHHhhcCCCCCcccHHHHHHHH-
Q 031051 16 PSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEE-----D---------GDVIGTMISVADFNKDGYVEYDEFERVL- 80 (166)
Q Consensus 16 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-----~---------~~~~~~~~~~~d~~~~g~i~~~ef~~~~- 80 (166)
...+.++++.++..+.|+|...+|...|..+-..++ . ...+..+|=.+++.+.|+|+..+.....
T Consensus 173 ~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snl 252 (493)
T KOG2562|consen 173 HTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNL 252 (493)
T ss_pred HHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHH
Confidence 345566677777777788887777777765433321 1 1223344445577788888887764332
Q ss_pred ----HHHhccc-cCCCccCCcccHHHHH---HHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----hcCCCC
Q 031051 81 ----DLEYGKA-NSKSKSNGGGGLMEDV---FKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL----GGGDEN 148 (166)
Q Consensus 81 ----~~~~~~~-~~~~~~~~~~~~~~~~---F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~----~d~~~~ 148 (166)
..+.... ......-...+....+ |..+|.|++|.|+.++++.+-... ++.--++.+|.+ .-.-.+
T Consensus 253 l~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~e 329 (493)
T KOG2562|consen 253 LDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVE 329 (493)
T ss_pred HHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeec
Confidence 2221100 0001111123334444 888999999999999998875544 556678889983 333458
Q ss_pred CcccHHHHHHHHHh
Q 031051 149 DGVSFDGLLKILAV 162 (166)
Q Consensus 149 g~i~~~eF~~~~~~ 162 (166)
|+++|++|+.++..
T Consensus 330 GrmdykdFv~FilA 343 (493)
T KOG2562|consen 330 GRMDYKDFVDFILA 343 (493)
T ss_pred CcccHHHHHHHHHH
Confidence 89999999999854
No 88
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.11 E-value=5e-06 Score=37.04 Aligned_cols=24 Identities=46% Similarity=0.738 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHH
Q 031051 19 LKPAFDVIDADRDGKISRDDLRAF 42 (166)
Q Consensus 19 l~~~f~~~D~~~~g~i~~~e~~~~ 42 (166)
|+.+|..+|.+++|.|+.+||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456777788888888888877765
No 89
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.05 E-value=1.5e-05 Score=49.43 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=44.9
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~ 159 (166)
....+...|..+|.+++|.|+..|++.+...+ ...+.=+..++..+|.|++|.||..|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 35667888999999999999999998886655 233344788999999999999999999753
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.01 E-value=3.7e-05 Score=57.57 Aligned_cols=55 Identities=18% Similarity=0.446 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc
Q 031051 52 DGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA 127 (166)
Q Consensus 52 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~ 127 (166)
....+..+|+.+|.+++|.|+..||.. ...+|..+|.+++|.|+.+||.+++...
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 788889999999999999999999942 3668999999999999999999988753
No 91
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.92 E-value=0.00014 Score=61.54 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc--CCC
Q 031051 53 GDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA--GFA 130 (166)
Q Consensus 53 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~--~~~ 130 (166)
-.+...+|..||.+.+|.+++.+|..|+..+-.. -+........-.+.......|++.+|||+..+...+|..- .--
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~-lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI 2330 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYD-LPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENI 2330 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCC-CcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccc
Confidence 3455678999999999999999999999877322 2222334445578999999999999999999999998863 223
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHH
Q 031051 131 ATDDDIKAMIRLGGGDENDGVSFDGLL 157 (166)
Q Consensus 131 ~s~~~~~~~~~~~d~~~~g~i~~~eF~ 157 (166)
.+..+|+..|+.++. +...|+-++..
T Consensus 2331 ~s~~eIE~AfraL~a-~~~yvtke~~~ 2356 (2399)
T KOG0040|consen 2331 LSSEEIEDAFRALDA-GKPYVTKEELY 2356 (2399)
T ss_pred cchHHHHHHHHHhhc-CCccccHHHHH
Confidence 466799999999987 55567766653
No 92
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.82 E-value=6.7e-05 Score=43.85 Aligned_cols=64 Identities=16% Similarity=0.341 Sum_probs=53.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHHhhcCC----CCCcccHHHHHHHHHhh
Q 031051 99 LMEDVFKVMDKDGDGRLSHGDLKSYMNCAG-F-AATDDDIKAMIRLGGGD----ENDGVSFDGLLKILAVD 163 (166)
Q Consensus 99 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~-~-~~s~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~~~ 163 (166)
.+..+|..|.. +.+.|+.++|..+|..-. . ..+.+++..++..+..+ ..+.+++++|..+|..+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36789999966 789999999999998753 3 46899999999997654 36899999999999764
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.74 E-value=1.8e-05 Score=49.08 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=46.0
Q ss_pred CchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 031051 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERV 79 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 79 (166)
.....+.=.|..+|.+++|.|+..|+..+...+ .+ ...=+..++..+|.++|+.|++.|+..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~-~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MP-PEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--ST-TGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hh-hHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 344566667999999999999999999998765 33 5556778899999999999999999764
No 94
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.67 E-value=0.00055 Score=53.10 Aligned_cols=147 Identities=22% Similarity=0.264 Sum_probs=93.2
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcC---CC--CCcccHHHHHHHHHHHhcc
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADF---NK--DGYVEYDEFERVLDLEYGK 86 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~---~~--~g~i~~~ef~~~~~~~~~~ 86 (166)
.++-+..+.++|...|.+.+|.++-.|+..+-......+....++..+....+. ++ +..++..-|+.+.......
T Consensus 190 kp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfier 269 (625)
T KOG1707|consen 190 KPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIER 269 (625)
T ss_pred cHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHh
Confidence 445677899999999999999999999998877544444344444444443322 21 3446666666555443221
Q ss_pred ccCCC----------------------------------ccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC-
Q 031051 87 ANSKS----------------------------------KSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAA- 131 (166)
Q Consensus 87 ~~~~~----------------------------------~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~- 131 (166)
...+. -.....+-+..+|..||.+++|.++.+|+..++...+...
T Consensus 270 gr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW 349 (625)
T KOG1707|consen 270 GRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPW 349 (625)
T ss_pred ccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCC
Confidence 00000 0111234578999999999999999999999999875322
Q ss_pred CH-HHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 132 TD-DDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 132 s~-~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
+. .+.+ ..-.+..|.++|+.|+...+.
T Consensus 350 ~~~~~~~----~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 350 TSSPYKD----STVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred CCCcccc----cceecccceeehhhHHHHHHH
Confidence 11 0101 111236789999999977654
No 95
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.63 E-value=0.0002 Score=54.64 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=62.6
Q ss_pred CCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 031051 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASE--EDGDVIGTMISVADFNKDGYVEYDEFERVLDLEY 84 (166)
Q Consensus 11 ~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 84 (166)
.+..++..+...|...| +++|+++..++..++...+... ...+++..++...+.+.+|+|+|++|+.++..+.
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 45567889999999999 9999999999999998764432 2588999999999999999999999999887763
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.60 E-value=0.00032 Score=53.57 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=55.3
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGF---AATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~---~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
..++..|...| +++|+|+..++..++...+. ....+++++++...+.|.+|+|++++|+..+.
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 45788999999 99999999999999998654 34678999999999999999999999998553
No 97
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.48 E-value=0.00089 Score=48.31 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=84.8
Q ss_pred hhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCc
Q 031051 17 SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGG 96 (166)
Q Consensus 17 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 96 (166)
..++..|..||.+++|.++..+--..+.-++..+.+...++--|.+|+.+.||.+.-.+|.-+++..+ .-.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l---------gv~ 329 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL---------GVE 329 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc---------Ccc
Confidence 56889999999999999999998888887766654788888899999999999999888877776652 112
Q ss_pred ccHHHHHHHhhCCCCCCcccHHHHHHHHHHcC
Q 031051 97 GGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAG 128 (166)
Q Consensus 97 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 128 (166)
.-.+--.|..++...+|.|+.++|+.+....+
T Consensus 330 ~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 330 VLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred eeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 23456789999999999999999999987653
No 98
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.31 E-value=0.00048 Score=30.74 Aligned_cols=27 Identities=37% Similarity=0.671 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHh
Q 031051 19 LKPAFDVIDADRDGKISRDDLRAFYAG 45 (166)
Q Consensus 19 l~~~f~~~D~~~~g~i~~~e~~~~l~~ 45 (166)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777777653
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.25 E-value=0.00056 Score=30.49 Aligned_cols=26 Identities=31% Similarity=0.865 Sum_probs=15.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHH
Q 031051 100 MEDVFKVMDKDGDGRLSHGDLKSYMN 125 (166)
Q Consensus 100 ~~~~F~~~D~~~~g~I~~~e~~~~l~ 125 (166)
++.+|+.+|.+++|.|+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34566666666666666666666554
No 100
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.20 E-value=0.0018 Score=37.71 Aligned_cols=65 Identities=12% Similarity=0.267 Sum_probs=52.0
Q ss_pred hHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCC-CCHHHHHHHHHhhcCC----CCCcccHHHHHHHHHHH
Q 031051 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASE-EDGDVIGTMISVADFN----KDGYVEYDEFERVLDLE 83 (166)
Q Consensus 18 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~ 83 (166)
++..+|..+-. +.+.|+.++|..+|..-.... .+.+.+..++..+.++ ..+.++++.|..++...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 46789999955 789999999999998654432 2789999999988654 46899999999999654
No 101
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0019 Score=39.55 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=45.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHc------CC---C-CCHHHHHH----HHHhhcCCCCCcccHHHHHHH
Q 031051 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCA------GF---A-ATDDDIKA----MIRLGGGDENDGVSFDGLLKI 159 (166)
Q Consensus 100 ~~~~F~~~D~~~~g~I~~~e~~~~l~~~------~~---~-~s~~~~~~----~~~~~d~~~~g~i~~~eF~~~ 159 (166)
--..|.++|.+++|.|..-|+..++.-+ |. + .|+.++.. +++.-|.|++|.|+|-||++.
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3467899999999999999998888753 22 2 35555544 555578889999999999874
No 102
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.15 E-value=0.0044 Score=50.67 Aligned_cols=143 Identities=17% Similarity=0.052 Sum_probs=97.6
Q ss_pred CCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhc
Q 031051 10 PRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEED----GDVIGTMISVADFNKDGYVEYDEFERVLDLEYG 85 (166)
Q Consensus 10 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 85 (166)
..++....+|+..|+.+++...|.++.+++...|..+|.+... ..++..+++..|+...|.|+|.+|...+...+
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~- 818 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY- 818 (890)
T ss_pred chhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh-
Confidence 3445667799999999999999999999999999999887632 34556677777777789999999999997763
Q ss_pred cccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh-hcCCCCCcccHHHHHHHHHhh
Q 031051 86 KANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL-GGGDENDGVSFDGLLKILAVD 163 (166)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~-~d~~~~g~i~~~eF~~~~~~~ 163 (166)
........+..+|+-+-++.. +|..+|+..-...+ .-+-++.++... .+..-.|.|.|..|..-+-.+
T Consensus 819 ------e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~~~d~l---v~d~~~~e~~~~~~~~~~~r~Ld~~~~s~~~~~e 887 (890)
T KOG0035|consen 819 ------EDLDTELRAILAFEDWAKTKA-YLLLEELVRERDEL---VRDLDIQEMAAYDEDERLPRGLDQVKFSSSLYEE 887 (890)
T ss_pred ------hhhcHHHHHHHHHHHHHcchh-HHHHHHHHhhccHh---hHHHHHHhhcccccCCcccccchHHHHHHHhhhh
Confidence 333445677788888877665 78888887611111 111122222221 222224558888887655443
No 103
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.12 E-value=0.011 Score=39.00 Aligned_cols=109 Identities=18% Similarity=0.090 Sum_probs=71.2
Q ss_pred chhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCC-------------------------------------------
Q 031051 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEE------------------------------------------- 51 (166)
Q Consensus 15 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~------------------------------------------- 51 (166)
....|++-...+|.|++|.|.+-|--..++.+|.+..
T Consensus 5 ~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 5 NMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred cccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 4456788888999999999999999888888887651
Q ss_pred ---------CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHH
Q 031051 52 ---------DGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKS 122 (166)
Q Consensus 52 ---------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~ 122 (166)
.....+.||+.++..+.+.+++.|...++..... ......=....-++...|.+. .+.+|.+..++++.
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~-~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN-ANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRG 162 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc-cCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhh
Confidence 2445567777777666667888877777765411 000011111223444455444 45678888888887
Q ss_pred HHH
Q 031051 123 YMN 125 (166)
Q Consensus 123 ~l~ 125 (166)
++.
T Consensus 163 vYD 165 (174)
T PF05042_consen 163 VYD 165 (174)
T ss_pred hcc
Confidence 754
No 104
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.08 E-value=0.0077 Score=48.22 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=80.4
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC
Q 031051 52 DGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAA 131 (166)
Q Consensus 52 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~ 131 (166)
...++..++...|.+++|.+++.+-..++..+ +..-....++..|+..+...++.+..+++..+....+...
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~--------n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp 205 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQL--------NVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP 205 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHH--------HHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc
Confidence 67788899999999999999999999999877 3334457788999999999999999999999988876443
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 132 TDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 132 s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
++..+|..+..+ .+.++.+++..|+.
T Consensus 206 ---ev~~~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 206 ---EVYFLFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred ---hHHHHHHHHhCC-CCccCHHHHHHHHH
Confidence 788888887655 66788777777764
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=96.93 E-value=0.014 Score=46.30 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=64.7
Q ss_pred CCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhc
Q 031051 67 KDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGF--AATDDDIKAMIRLGG 144 (166)
Q Consensus 67 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~--~~s~~~~~~~~~~~d 144 (166)
..|.++|.+|..+...+ .........++..+|..+-.++ +.|+.++|..+|..... ..+.+++..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~------k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~ 85 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKF------KITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVI 85 (599)
T ss_pred cCCCcCHHHHHHHHHHh------ccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 35899999998887766 1122234578999999996544 68999999999998643 356777777765431
Q ss_pred -------CCCCCcccHHHHHHHHHhh
Q 031051 145 -------GDENDGVSFDGLLKILAVD 163 (166)
Q Consensus 145 -------~~~~g~i~~~eF~~~~~~~ 163 (166)
......++++.|..+|...
T Consensus 86 ~~~~~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 86 NRRHHVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred hhccccccccccCcCHHHHHHHHcCc
Confidence 1123459999999999753
No 106
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.75 E-value=0.0013 Score=45.74 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=50.8
Q ss_pred CcccHHHHHHHhhCCCCCCcccHHHHHHHHHH-cCCCC--CHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 031051 95 GGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNC-AGFAA--TDDDIKAMIRLGGGDENDGVSFDGLLKI 159 (166)
Q Consensus 95 ~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~-~~~~~--s~~~~~~~~~~~d~~~~g~i~~~eF~~~ 159 (166)
.....+..+|...|.+.+|.|+..|+++.+.. +..++ +.++-+..|...|.|++|+|+++||.--
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvk 165 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVK 165 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhH
Confidence 34567888999999999999999999988764 33222 3345556777899999999999999743
No 107
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.53 E-value=0.0075 Score=44.02 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=80.2
Q ss_pred hHHHHHHHhCCCCCCcccHHHHHHHHHhcCCC--CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCC
Q 031051 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRAS--EEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNG 95 (166)
Q Consensus 18 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 95 (166)
+|..+|..+=.+.++......+...-..+... +.-+.++..||.+.|.+.|+.++..|...+....
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk------------ 279 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK------------ 279 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC------------
Confidence 67888888766666666665555554433332 2268889999999999999999999988877544
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAM 139 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~ 139 (166)
...-++..|..+|...+|.|+-.|.-.-+...+ .+...+...+
T Consensus 280 nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~ri 322 (434)
T KOG3555|consen 280 NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD-PPCQAELCRI 322 (434)
T ss_pred chhHHHHHHhhhcccccCccccchhhhhhccCC-CccccHHHHH
Confidence 246688899999999999999999988888765 3333343333
No 108
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.005 Score=50.90 Aligned_cols=145 Identities=20% Similarity=0.327 Sum_probs=111.2
Q ss_pred CCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhcccc-
Q 031051 10 PRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKAN- 88 (166)
Q Consensus 10 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~- 88 (166)
..++.+...+..+|..+.+. +|.++....+.++..- .+ ....+..++...|.+.+|.++..||.-.+.-......
T Consensus 122 ~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~L-p~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KL-PSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CC-ChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 34556777888888888775 8899999988888653 33 6777788999999999999999999766644332111
Q ss_pred -C-----------------C----------------------------------------------------------Cc
Q 031051 89 -S-----------------K----------------------------------------------------------SK 92 (166)
Q Consensus 89 -~-----------------~----------------------------------------------------------~~ 92 (166)
. . ..
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence 0 0 00
Q ss_pred cCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 93 SNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 93 ~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
.......+..+|...|.+.+|.|+..+.+..+...| ++...+...+...+..+.|.|++.+|.-.+
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhh
Confidence 111233466789999999999999999999998866 888889999999999999999999887554
No 109
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.016 Score=35.56 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=44.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCC------CC---CCHHHHHHHHH----hhcCCCCCcccHHHHHHH
Q 031051 21 PAFDVIDADRDGKISRDDLRAFYAGRRA------SE---EDGDVIGTMIS----VADFNKDGYVEYDEFERV 79 (166)
Q Consensus 21 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~------~~---~~~~~~~~~~~----~~d~~~~g~i~~~ef~~~ 79 (166)
..|...|-+++|.|+--|+...+..... .+ ++..++..++. .-|.++||.|+|-||...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4677889999999999999999874322 11 16666666654 446788999999999864
No 110
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.24 E-value=0.067 Score=31.63 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=43.5
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHc-------CC----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhhc
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCA-------GF----AATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDTV 165 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-------~~----~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 165 (166)
+.++.+|.++ .|.+|.++...|..++..+ |+ ...+.-++.+|.... ....|+.++|++.+..+|-
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--T
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCCC
Confidence 4578899999 5778999999999998862 22 236777888888863 3457999999999999874
No 111
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.014 Score=44.81 Aligned_cols=64 Identities=11% Similarity=0.229 Sum_probs=57.5
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
++++....|+.+-.|-.|.|+..--++++.... +..+|+..+++..|.+.||.+++.||...|.
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 456778899999999999999999999998865 7778999999999999999999999998874
No 112
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.016 Score=44.42 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=61.2
Q ss_pred CCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 11 ~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
+++.+++.+-..|+.+-+|..|.|+-.--++++... .+ .-+++..||...|.+.||-+++.||+..+--.
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--kl-pi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KL-PIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cC-chHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 466788888899999999999999999999998764 33 78899999999999999999999999988654
No 113
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.03 E-value=0.061 Score=35.29 Aligned_cols=65 Identities=8% Similarity=0.102 Sum_probs=47.5
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCCC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 031051 20 KPAFDVIDADRDGKISRDDLRAFYAGRRASE--EDGDVIGTMISVADFNKDGYVEYDEFERVLDLEY 84 (166)
Q Consensus 20 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 84 (166)
...|..+-..+...|+...|..+++..++-. .+...+..+|..+...+..+|+|++|..++..+.
T Consensus 5 F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 5 FKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 3344444555667899999999999766532 2888999999998776667899999999998773
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.015 Score=46.89 Aligned_cols=67 Identities=19% Similarity=0.359 Sum_probs=57.0
Q ss_pred CCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 031051 13 AAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDL 82 (166)
Q Consensus 13 ~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 82 (166)
..+...+.++|+.+|+..+|+|+...-+.+|-.. ++ ....+..|+..-|.|+||+++.+||+-.+.-
T Consensus 191 ~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~L-pq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 191 QHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GL-PQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred chhhhHHHHHhhhcccccccccccHHHHHHHHhc--CC-chhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 3456678999999999999999999999998654 33 7788889999999999999999999766643
No 115
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.94 E-value=0.092 Score=34.83 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=56.9
Q ss_pred ccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC-----------------------------------------------
Q 031051 97 GGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGF----------------------------------------------- 129 (166)
Q Consensus 97 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~----------------------------------------------- 129 (166)
...+++...-+|.|++|.|..-|-.+-++.+|.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 356777888899999999999999988888876
Q ss_pred ------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 130 ------AATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 130 ------~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
++.++.++++|..++....+.+++.|...++..
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 566778999999999888889999999998865
No 116
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.86 E-value=0.019 Score=44.80 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=58.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 99 LMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 99 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
..+..|..+|.++.|+++.++..++|+..+.++++..+..++...+.+.+|.++..||.+++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 4567899999999999999999999999888999999999999999999999999999998753
No 117
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.78 E-value=0.011 Score=42.99 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=51.0
Q ss_pred ccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 031051 97 GGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAA-TDDDIKAMIRLGGGDENDGVSFDGLLKILAVD 163 (166)
Q Consensus 97 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~-s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 163 (166)
...+..-|.++|++.++.|...|++.+=.-+-..- ...=...+++.+|.|+|.+|++.|+..+|-..
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 34567789999999999999999877644432222 22335678889999999999999999988543
No 118
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.75 E-value=0.073 Score=46.08 Aligned_cols=59 Identities=27% Similarity=0.433 Sum_probs=52.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 102 ~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
..|+.||++|.|.|+..+|..++... .+.++.+++-++.-+..+.+..++|++|++-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 46899999999999999999998764 568889999999988888888999999998764
No 119
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.49 E-value=0.88 Score=37.94 Aligned_cols=123 Identities=15% Similarity=0.273 Sum_probs=87.6
Q ss_pred hCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhc--CCCCC-----cccHHHHHHHHHHHhccccCCCccCCccc
Q 031051 26 IDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVAD--FNKDG-----YVEYDEFERVLDLEYGKANSKSKSNGGGG 98 (166)
Q Consensus 26 ~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d--~~~~g-----~i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 98 (166)
+..+..|.|....+.....+ +. .+..+........ .+... -.+++.|..++..+ ..+.
T Consensus 157 mqvn~~grip~knI~k~F~~---~k-~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl-----------cpR~ 221 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSA---DK-KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL-----------CPRP 221 (1189)
T ss_pred hcccccccccHHHHHHHhhc---CC-chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc-----------CCch
Confidence 34577888888887777654 22 2233333333221 12222 25666777777766 3457
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcC----------CCCCHHHHHHHHHhhcCCC----CCcccHHHHHHHHHhh
Q 031051 99 LMEDVFKVMDKDGDGRLSHGDLKSYMNCAG----------FAATDDDIKAMIRLGGGDE----NDGVSFDGLLKILAVD 163 (166)
Q Consensus 99 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~----------~~~s~~~~~~~~~~~d~~~----~g~i~~~eF~~~~~~~ 163 (166)
.+..+|..+..+...++|.++|..++..-. -...+..+..+++.+..|. .|.++-+.|+.+++.+
T Consensus 222 eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 222 EIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred hHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 899999999999989999999999998631 2457788999999987775 6899999999999874
No 120
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.38 E-value=0.12 Score=33.99 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=45.8
Q ss_pred HHHHHhh---CCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 101 EDVFKVM---DKDGDGRLSHGDLKSYMNCAG---FAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 101 ~~~F~~~---D~~~~g~I~~~e~~~~l~~~~---~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
+.+|..| -......++...|..+++..+ ..++..+++-+|..+-......|+|++|+.+|.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 4455555 345566899999999999864 468999999999997666666799999998885
No 121
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.22 E-value=0.021 Score=31.99 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=38.3
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC-------CCCcccHHHHHH
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGD-------ENDGVSFDGLLK 158 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~-------~~g~i~~~eF~~ 158 (166)
..+.+..+|+.+ .++.++||.+||++.+.. ++++-++..+..- ..|.++|..|+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 357889999999 778899999999988443 3444555543322 236789988874
No 122
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.55 E-value=0.17 Score=36.70 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH-c----CCCCCHHHH-----------HHHHHhhcCCCCCcccHHHHHHHH
Q 031051 100 MEDVFKVMDKDGDGRLSHGDLKSYMNC-A----GFAATDDDI-----------KAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 100 ~~~~F~~~D~~~~g~I~~~e~~~~l~~-~----~~~~s~~~~-----------~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
-+..|.++|.+++|.++..|+..++.. + .....+.++ +.+++..|.|.+..|+.+||+..-
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 355678888999999999999999874 2 111222222 225667999999999999998753
No 123
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.51 E-value=0.018 Score=41.87 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=50.1
Q ss_pred hHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 18 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
.+.-.|..+|+++++.|...|++.+=.-+..-.....=...++...|.++|..|++.|+..++...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 445568999999999999999876644322111144455678889999999999999999999765
No 124
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.25 E-value=0.17 Score=37.25 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=56.1
Q ss_pred CCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 11 ~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..+.=...+-=+|.++|.+.+|.|+..|+..+-. .. .+.=+..+|...|...||.|+-.|++.++...
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dk-nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL----DK-NEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhhc----cC-chhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 4455556777799999999999999999998864 22 55667789999999999999999999998664
No 125
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.99 E-value=0.13 Score=40.38 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=64.5
Q ss_pred CCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 11 RDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 11 ~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
.++.....+...|..+|.++.|+++.++....++..+.+. ....+..+....+.+-.|.+...+|.+++...
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~-d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGW-DEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 4667778888999999999999999999999999988666 88888889988888889999999999999877
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.94 E-value=0.12 Score=41.12 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCC
Q 031051 34 ISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDG 113 (166)
Q Consensus 34 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 113 (166)
|..+.|..+.+.+..-..+..-...+|...|.+++|.++|.+++..+..+ ......+.+...|++||.+++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l--------~~~~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL--------KAGDALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHH--------HhhhHHHHHHHHHhhccCCcc-
Confidence 34444555554332211256667789999999999999999999999887 333445778999999999998
Q ss_pred cccHHHH
Q 031051 114 RLSHGDL 120 (166)
Q Consensus 114 ~I~~~e~ 120 (166)
....++.
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 8887777
No 127
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=0.26 Score=41.21 Aligned_cols=142 Identities=18% Similarity=0.279 Sum_probs=104.1
Q ss_pred CchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhcccc-----
Q 031051 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKAN----- 88 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~----- 88 (166)
.....+..+|+..|..+.|.|+.++-..++..-++ ....+..++...|..+.|.++..+|...+........
T Consensus 8 ~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L---~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~ 84 (847)
T KOG0998|consen 8 PGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGL---PDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELS 84 (847)
T ss_pred CccchHHHhhhccCcccCCcccHHHhhhhhhcccc---chhhhhccccccccccCCccccccccccchHhhhhhcccCcC
Confidence 33467889999999999999999999999976543 6677778888888888899999999887765332000
Q ss_pred ----------CC-----------C--c------------cCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCH
Q 031051 89 ----------SK-----------S--K------------SNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATD 133 (166)
Q Consensus 89 ----------~~-----------~--~------------~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~ 133 (166)
.. . . ..........+|....+. .|.++.+..+-++...+ +..
T Consensus 85 ~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~ 161 (847)
T KOG0998|consen 85 AKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPS 161 (847)
T ss_pred ccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CCh
Confidence 00 0 0 000112345567777766 78999888888877765 556
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 134 DDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 134 ~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
.-+..+....|.+.+|.++..+|.-.+.
T Consensus 162 ~~l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 162 DVLGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred hhhccccccccccccCCCChhhhhhhhh
Confidence 6677888899999999999999986654
No 128
>PLN02952 phosphoinositide phospholipase C
Probab=92.33 E-value=2.5 Score=34.10 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCcccHHHHHHHHHhcCCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhh-
Q 031051 30 RDGKISRDDLRAFYAGRRASE-EDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVM- 107 (166)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~- 107 (166)
+.|.++.++|..+.+.+.... ...+++..+|..+..+ .+.++.++|..++....... .........+++.+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~------~~~~~~~~~i~~~~~ 85 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDEL------DCTLAEAQRIVEEVI 85 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCc------CCCHHHHHHHHHHHH
Confidence 468999999998887664322 1688999999999554 46899999999998872211 11122333443322
Q ss_pred ---C---CCCCCcccHHHHHHHHH
Q 031051 108 ---D---KDGDGRLSHGDLKSYMN 125 (166)
Q Consensus 108 ---D---~~~~g~I~~~e~~~~l~ 125 (166)
. ..+.+.++.+.|..+|.
T Consensus 86 ~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 86 NRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred hhccccccccccCcCHHHHHHHHc
Confidence 1 12334588899888886
No 129
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.12 E-value=0.39 Score=42.01 Aligned_cols=59 Identities=22% Similarity=0.408 Sum_probs=48.4
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 031051 22 AFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDL 82 (166)
Q Consensus 22 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 82 (166)
.|+.+|+++.|.|+..+|...+..- ...+..++..+..-...+.+..++|++|+.-+-.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~--k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc--ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 3677999999999999999999753 2237888888888888888899999999887643
No 130
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=91.81 E-value=0.65 Score=27.87 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=44.7
Q ss_pred chhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCC---CCCcccHHHHHHHHHHH
Q 031051 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFN---KDGYVEYDEFERVLDLE 83 (166)
Q Consensus 15 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~~~~~ 83 (166)
....++..|..+-. +|+|+.++|..++ |... +++-...+|..+... ....|+.+|+..+|...
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~d-SkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMKD-SKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S--HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCcc-cHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 46788899999866 8999999999998 4455 777777777654321 24679999999999877
No 131
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=91.39 E-value=0.73 Score=29.65 Aligned_cols=71 Identities=8% Similarity=0.106 Sum_probs=40.5
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCC-------CCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHH
Q 031051 31 DGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFN-------KDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDV 103 (166)
Q Consensus 31 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (166)
-+.|+++||.++-+-+.. +...+..++..|..+ ..+.|+|+.|..++...+. ..-.....+++
T Consensus 5 ~~~lsp~eF~qLq~y~ey---s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe-------~d~P~~lc~hL 74 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY---STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE-------VDLPEDLCQHL 74 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT--------S--HHHHHHH
T ss_pred eeccCHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc-------CCCCHHHHHHH
Confidence 467899999888765544 444556666655322 3568999999999998842 22445778889
Q ss_pred HHhhCCCC
Q 031051 104 FKVMDKDG 111 (166)
Q Consensus 104 F~~~D~~~ 111 (166)
|..|-...
T Consensus 75 F~sF~~~~ 82 (138)
T PF14513_consen 75 FLSFQKKP 82 (138)
T ss_dssp HHHS----
T ss_pred HHHHhCcc
Confidence 98886554
No 132
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.24 E-value=1 Score=36.09 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=51.1
Q ss_pred ccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhcC-CCCCcccHHHHHHHHHhh
Q 031051 97 GGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGF--AATDDDIKAMIRLGGG-DENDGVSFDGLLKILAVD 163 (166)
Q Consensus 97 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~--~~s~~~~~~~~~~~d~-~~~g~i~~~eF~~~~~~~ 163 (166)
..++..+|..+.. .+.++.++|..+|..... ..+.+.+..++..+.. -..+.++++.|..+|..+
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 4589999999864 479999999999998643 3577788888887532 235679999999999864
No 133
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.22 E-value=2.2 Score=27.04 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhcCCC--CCcccHHHHHHHHHHHhccccCCCcc----------CCcccHHHHHHH
Q 031051 38 DLRAFYAGRRASEEDGDVIGTMISVADFNK--DGYVEYDEFERVLDLEYGKANSKSKS----------NGGGGLMEDVFK 105 (166)
Q Consensus 38 e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~~~~~~~~~~~~~~~----------~~~~~~~~~~F~ 105 (166)
.++.+-+.+..+..+-..+..+|....-++ +..++..+...++...+...+.+... ....-.+..++.
T Consensus 25 KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~ 104 (127)
T PF09068_consen 25 KLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLN 104 (127)
T ss_dssp HHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHH
Confidence 444444455555445555666666554432 46799999999998887432221111 122334567889
Q ss_pred hhCCCCCCcccHHHHHHHHHHc
Q 031051 106 VMDKDGDGRLSHGDLKSYMNCA 127 (166)
Q Consensus 106 ~~D~~~~g~I~~~e~~~~l~~~ 127 (166)
.||.+++|.|+.-.++..+..+
T Consensus 105 vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 105 VYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HH-TT--SEEEHHHHHHHHHHT
T ss_pred HhCCCCCCeeehhHHHHHHHHh
Confidence 9999999999999998877543
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=91.02 E-value=1.8 Score=34.65 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=51.7
Q ss_pred CcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC-C-CCHHHHHHHHHhhcCC----CCCcccHHHHHHHHHhh
Q 031051 95 GGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGF-A-ATDDDIKAMIRLGGGD----ENDGVSFDGLLKILAVD 163 (166)
Q Consensus 95 ~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~-~-~s~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~~~ 163 (166)
....++..+|..+..+ +.++.++|..+|..... . .+.+.+..++..+... ..|.++.+.|..+|...
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 3567899999998743 58999999999998643 2 4567788888887543 24679999999999763
No 135
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.55 E-value=0.87 Score=37.99 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=51.6
Q ss_pred ccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCH-HH-HHHHH---HhhcCCCCCcccHHHHHHHHHh
Q 031051 97 GGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATD-DD-IKAMI---RLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 97 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~-~~-~~~~~---~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
...++..|..+++...|.++.+++...+..+|...-+ ++ +.+++ ..-|.+.-|.+++.+|.++|.-
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 4568899999999999999999999999999977654 22 33333 3455555689999999998854
No 136
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.39 E-value=0.29 Score=36.48 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=49.1
Q ss_pred CCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh-hcCCCCCcccHHHHHHHH
Q 031051 94 NGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL-GGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 94 ~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~-~d~~~~g~i~~~eF~~~~ 160 (166)
.....+++++|..+|+.+.|+|+..-++.++..+...+++.+.-.+.+. .+...-|.|=..+|+.-+
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 3346789999999999999999999999999998766666554444443 555555556555555444
No 137
>PLN02230 phosphoinositide phospholipase C 4
Probab=88.78 E-value=3.4 Score=33.30 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=50.1
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-C--CCCHHHHHHHHHhhc-------CCCCCcccHHHHHHHHHhh
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAG-F--AATDDDIKAMIRLGG-------GDENDGVSFDGLLKILAVD 163 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~-~--~~s~~~~~~~~~~~d-------~~~~g~i~~~eF~~~~~~~ 163 (166)
...+++.+|..|..++ ++++.++|..+|.... . ..+.+++..++..+- .-..+.++.+.|..+|...
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 4578999999996555 7999999999999865 2 346677777776431 1124469999999999763
No 138
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=88.53 E-value=4.8 Score=33.70 Aligned_cols=145 Identities=10% Similarity=0.097 Sum_probs=84.6
Q ss_pred CCCchh-hHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCC
Q 031051 12 DAAKPS-RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSK 90 (166)
Q Consensus 12 ~~~~~~-~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 90 (166)
.+.++. .+++.+-..|......|+..+++.+|........+......-+... ....+.++|++|..++..++-.....
T Consensus 138 ~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~a 216 (1267)
T KOG1264|consen 138 TPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQKA 216 (1267)
T ss_pred ChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccchh
Confidence 444444 4566666677767778999999999998877663443332333322 33457799999999998874321111
Q ss_pred CccCCcccHHHHHH--HhhCCCCCCcccHHHHHHHHHHcCCCCCH---HHHHHHHHhhcCC-----CCCcccHHHHHHHH
Q 031051 91 SKSNGGGGLMEDVF--KVMDKDGDGRLSHGDLKSYMNCAGFAATD---DDIKAMIRLGGGD-----ENDGVSFDGLLKIL 160 (166)
Q Consensus 91 ~~~~~~~~~~~~~F--~~~D~~~~g~I~~~e~~~~l~~~~~~~s~---~~~~~~~~~~d~~-----~~g~i~~~eF~~~~ 160 (166)
. .......| ..-+......++..||.++|..-...... ..++.++..+-.| ....+.+.||+.++
T Consensus 217 ~-----l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fL 291 (1267)
T KOG1264|consen 217 I-----LLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFL 291 (1267)
T ss_pred h-----hhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHH
Confidence 1 00111111 11222233568999999998753222111 2345555443322 23469999999998
Q ss_pred Hh
Q 031051 161 AV 162 (166)
Q Consensus 161 ~~ 162 (166)
..
T Consensus 292 FS 293 (1267)
T KOG1264|consen 292 FS 293 (1267)
T ss_pred hh
Confidence 65
No 139
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=88.49 E-value=0.63 Score=37.24 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=50.9
Q ss_pred hhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHH
Q 031051 17 SRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEF 76 (166)
Q Consensus 17 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 76 (166)
.-++++|+.+|..++|.|+..++...|..+..+. ..+.+..++..++..++ ..+.++.
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~-~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGD-ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhh-HHHHHHHHHhhccCCcc-ccccccc
Confidence 3568899999999999999999999999887777 77788889999999988 7777776
No 140
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=87.86 E-value=3.1 Score=23.26 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 115 LSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 115 I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
++.+++..++...|..+++.++..+++.-+..+--..+-+.+..|+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 4446788888888899999999999988554443344444444444
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=87.33 E-value=6.5 Score=31.59 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=53.5
Q ss_pred CCCCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCC-CCHHHHHHHHHhhcCC----CCCcccHHHHHHHHHH
Q 031051 8 LRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASE-EDGDVIGTMISVADFN----KDGYVEYDEFERVLDL 82 (166)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~ 82 (166)
.+........++..+|..+-. ++.|+.++|..+|....... .+.+.+..++..+... ..+.++.+.|..++..
T Consensus 15 ~~~~~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 15 FKEKTREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcCCCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 344444566788889988854 35899999999998764432 1566788888887543 2467999999999965
Q ss_pred H
Q 031051 83 E 83 (166)
Q Consensus 83 ~ 83 (166)
.
T Consensus 93 ~ 93 (567)
T PLN02228 93 D 93 (567)
T ss_pred c
Confidence 4
No 142
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=87.29 E-value=3.3 Score=34.11 Aligned_cols=97 Identities=9% Similarity=0.059 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHH-------HHHHc--
Q 031051 57 GTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKS-------YMNCA-- 127 (166)
Q Consensus 57 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~-------~l~~~-- 127 (166)
..+++.||+.++|.|..-+|.-.+..+ ......+.++.+|.....+++..+ .-.|.. +.+-+
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~l--------ck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE 543 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISL--------CKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGE 543 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHH--------hcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhH
Confidence 557789999999999988887776665 334456778899999987776554 333333 33322
Q ss_pred ----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 128 ----GFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 128 ----~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
|...-+.-++.+|.. .++...|++..|+..+.+.|
T Consensus 544 ~aAfGgsNvepsvrsCF~~--v~~~pei~~~~f~dw~~~ep 582 (966)
T KOG4286|consen 544 VAAFGGSNIEPSVRSCFQF--VNNKPEIEAALFLDWMRLEP 582 (966)
T ss_pred HHhhcCCCCChHHHHHHHh--cCCCCcchHHHHHHHhccCc
Confidence 444444567888884 34556899999999887765
No 143
>PLN02222 phosphoinositide phospholipase C 2
Probab=86.02 E-value=6 Score=31.90 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=49.4
Q ss_pred chhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCC-CHHHHHHHHHhhcC-CCCCcccHHHHHHHHHH
Q 031051 15 KPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEE-DGDVIGTMISVADF-NKDGYVEYDEFERVLDL 82 (166)
Q Consensus 15 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~ 82 (166)
...++..+|..+-. ++.|+.++|..+|........ +.+.+..++..+.. ...+.++++.|..++..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44578888988853 479999999999987654322 67778888887632 23567999999999965
No 144
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.01 E-value=9.7 Score=30.88 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=51.5
Q ss_pred CCCCCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCC--CCHHHHHHHHHhhcC-------CCCCcccHHHHH
Q 031051 7 ALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASE--EDGDVIGTMISVADF-------NKDGYVEYDEFE 77 (166)
Q Consensus 7 ~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~d~-------~~~g~i~~~ef~ 77 (166)
..+........++..+|..+-.++ +.|+.++|..+|....... .+.+.+..++..+-. -+.+.++++.|.
T Consensus 19 ~~~~~~~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~ 97 (598)
T PLN02230 19 KFRMTESGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFN 97 (598)
T ss_pred ccccccCCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHH
Confidence 344445556678999999995443 7999999999999755322 145566666654321 123569999999
Q ss_pred HHHHH
Q 031051 78 RVLDL 82 (166)
Q Consensus 78 ~~~~~ 82 (166)
.++..
T Consensus 98 ~yL~s 102 (598)
T PLN02230 98 YYLFS 102 (598)
T ss_pred HHHcC
Confidence 98865
No 145
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=84.35 E-value=1.5 Score=28.19 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=27.5
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC-------CCCcccHHHHHHHHHh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGD-------ENDGVSFDGLLKILAV 162 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~-------~~g~i~~~eF~~~~~~ 162 (166)
+.||..||.++-+=+. .|...+..+++.+..+ ..+.|+|+.|..||..
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 6789999998866432 2344555566555333 2457999999999864
No 146
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=84.13 E-value=8.8 Score=24.95 Aligned_cols=85 Identities=14% Similarity=0.220 Sum_probs=49.8
Q ss_pred CcccHHHHHHHHHHHhccccCCCccCC----cccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh--
Q 031051 69 GYVEYDEFERVLDLEYGKANSKSKSNG----GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL-- 142 (166)
Q Consensus 69 g~i~~~ef~~~~~~~~~~~~~~~~~~~----~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~-- 142 (166)
..|++.||...+............... .......+|..+ |...=+.+-+..+|...+++|+..++..
T Consensus 47 e~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l~~g~ 119 (145)
T PF13623_consen 47 EKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDMLNQGT 119 (145)
T ss_pred EEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHHhcCC
Confidence 459999998887666321111111111 112233444433 3334456666778999999988888821
Q ss_pred --------hcCCCCCcccHHHHHHHH
Q 031051 143 --------GGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 143 --------~d~~~~g~i~~~eF~~~~ 160 (166)
+-.+..|.++...|.+|+
T Consensus 120 ~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 120 NPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred CchhhhccccCcccCCcCHHHHHhhC
Confidence 224568889988887764
No 147
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=83.29 E-value=6 Score=23.72 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=52.4
Q ss_pred CCCcccHHHHHHHHHhcCC--CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhh
Q 031051 30 RDGKISRDDLRAFYAGRRA--SEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVM 107 (166)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 107 (166)
-+|.++..|...+-.-+.. +. +..+...+...+........++.+|...+.... ........+..+|...
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~r~~~l~~L~~vA 83 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGL-DAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF-------DYEERLELVEALWEVA 83 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHHH
Confidence 3788898888777653222 33 667777777777666666688999988877652 1112234455566555
Q ss_pred CCCCCCcccHHHHHHH
Q 031051 108 DKDGDGRLSHGDLKSY 123 (166)
Q Consensus 108 D~~~~g~I~~~e~~~~ 123 (166)
-.| |.++..|-.-+
T Consensus 84 ~AD--G~~~~~E~~~l 97 (104)
T cd07313 84 YAD--GELDEYEEHLI 97 (104)
T ss_pred Hhc--CCCCHHHHHHH
Confidence 444 66777665444
No 148
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=81.98 E-value=4.7 Score=22.68 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=30.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 112 DGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 112 ~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
+-.++...+-.++... ++...+..+.+.++.-..++|+.++|++.++
T Consensus 6 sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR 52 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLR 52 (70)
T ss_pred CCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3455544444444443 6666777777777666677888888887664
No 149
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=81.71 E-value=7.2 Score=28.71 Aligned_cols=92 Identities=18% Similarity=0.284 Sum_probs=56.7
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccC-Cc-------ccHHHHHHHh
Q 031051 35 SRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSN-GG-------GGLMEDVFKV 106 (166)
Q Consensus 35 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~F~~ 106 (166)
|..+++.++.....-.+..-.-...|...|.++||.++=.|.-.++..-+.+.-...+.. .. ..--..+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 456666666644221113333345677778899999998888888766554322222211 11 1112357889
Q ss_pred hCCCCCCcccHHHHHHHHHH
Q 031051 107 MDKDGDGRLSHGDLKSYMNC 126 (166)
Q Consensus 107 ~D~~~~g~I~~~e~~~~l~~ 126 (166)
.|.+.+..||.+||-..-..
T Consensus 305 vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cccchhhhhhHHHHHhhhhh
Confidence 99999999999999665443
No 150
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=80.36 E-value=8.4 Score=23.54 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=31.5
Q ss_pred HhhCCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHhhcCCCCCcccHH
Q 031051 105 KVMDKDGDGRLSHGDLKSYMNC----------AGFAATDDDIKAMIRLGGGDENDGVSFD 154 (166)
Q Consensus 105 ~~~D~~~~g~I~~~e~~~~l~~----------~~~~~s~~~~~~~~~~~d~~~~g~i~~~ 154 (166)
++||...+.+||.+++++++.. .|..++..-+-.++-.....+...++..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~ 69 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD 69 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH
Confidence 4688888889999999888875 2445555555555544433344444443
No 151
>PLN02223 phosphoinositide phospholipase C
Probab=80.11 E-value=9 Score=30.55 Aligned_cols=67 Identities=12% Similarity=-0.006 Sum_probs=48.9
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHH---HHcC--CCCCHHHHHHHHHhhcCC--------CCCcccHHHHHHHHHh
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYM---NCAG--FAATDDDIKAMIRLGGGD--------ENDGVSFDGLLKILAV 162 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l---~~~~--~~~s~~~~~~~~~~~d~~--------~~g~i~~~eF~~~~~~ 162 (166)
.-..++.+|..|. .+.|.++.+.+.+++ .... ...+.++++.++...-.. ..+.++.+.|..+|..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4578899999995 567899999999999 5432 345677777777653221 1256999999999977
Q ss_pred h
Q 031051 163 D 163 (166)
Q Consensus 163 ~ 163 (166)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 3
No 152
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=79.55 E-value=10 Score=22.22 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=33.8
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHH
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDG 155 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~e 155 (166)
..||..||..+-+..+..+++++.+.++..+-++.-.-.+-++
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~ 55 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQE 55 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHH
Confidence 3699999999999999999999999999887655433344333
No 153
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=79.19 E-value=18 Score=28.01 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=64.7
Q ss_pred CCCCcccHHHHHHHHHhcCCCC---CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHH
Q 031051 29 DRDGKISRDDLRAFYAGRRASE---EDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFK 105 (166)
Q Consensus 29 ~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 105 (166)
.|+...+..||+.+....+... ..-+-++.|-+..|.+.+|.|+.+|=-.++..-+... .....-...|.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~-------~~~~kr~~~fH 112 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYR-------DSTRKRSEKFH 112 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcc-------cchhhhhhhcc
Confidence 4555677777776655433321 1556778888899999999999998888887653211 11111122443
Q ss_pred hhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 031051 106 VMDKDGDGRLSHGDLKSYMNCAG-FAATDDDIKAMIR 141 (166)
Q Consensus 106 ~~D~~~~g~I~~~e~~~~l~~~~-~~~s~~~~~~~~~ 141 (166)
. .+.+|+.+++..++.... .+++.+++-.++-
T Consensus 113 ~----dD~~ItVedLWeaW~~Sev~nWT~e~tvqWLi 145 (575)
T KOG4403|consen 113 G----DDKHITVEDLWEAWKESEVHNWTNERTVQWLI 145 (575)
T ss_pred C----CccceeHHHHHHHHHhhhhhcchHHHHHHHHH
Confidence 3 345899999999998753 4566666555443
No 154
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=78.45 E-value=8.2 Score=31.02 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=47.9
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhcCC-----CCCcccHHHHHHHH
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNC-AGFAATDDDIKAMIRLGGGD-----ENDGVSFDGLLKIL 160 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~-~~~~~s~~~~~~~~~~~d~~-----~~g~i~~~eF~~~~ 160 (166)
....+.++|+..|.|.+|.++.+|+-.+-+. ++..+.+.++..+....+.. .++.++...|+-+.
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLN 263 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHH
Confidence 3556889999999999999999999888765 68888887766665543222 24457777776543
No 155
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=77.01 E-value=5.8 Score=21.78 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=20.0
Q ss_pred HhhCCCCCCcccHHHHHHHHHH
Q 031051 105 KVMDKDGDGRLSHGDLKSYMNC 126 (166)
Q Consensus 105 ~~~D~~~~g~I~~~e~~~~l~~ 126 (166)
++||...+.+|+.+++++++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 5789999999999999999886
No 156
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=75.96 E-value=14 Score=22.64 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031051 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGG 144 (166)
Q Consensus 101 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d 144 (166)
..+|-+...-+....+..+++.++...|.+...+-+..++..+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 45667777777778999999999999999999999999998874
No 157
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=74.47 E-value=56 Score=28.14 Aligned_cols=89 Identities=9% Similarity=0.133 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhcc--ccCCCccCCcccHHHHHHHhhCCCC
Q 031051 34 ISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGK--ANSKSKSNGGGGLMEDVFKVMDKDG 111 (166)
Q Consensus 34 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~~~~~~~~F~~~D~~~ 111 (166)
.+.+.|..++..++. ..+++.+|..+..+....++.+++..++....+. .+...-.......+..+.+.|.++.
T Consensus 205 f~~e~f~~~l~klcp----R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCP----RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred ccHHHHHHHHHhcCC----chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 344556666666543 4578899999987777889999999999876432 2222233445567888888887664
Q ss_pred ----CCcccHHHHHHHHHH
Q 031051 112 ----DGRLSHGDLKSYMNC 126 (166)
Q Consensus 112 ----~g~I~~~e~~~~l~~ 126 (166)
.|.|+.+=|.+++..
T Consensus 281 ~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhccccchhhhHHHhhC
Confidence 688888888777654
No 158
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=73.71 E-value=6.5 Score=23.55 Aligned_cols=50 Identities=8% Similarity=0.181 Sum_probs=30.6
Q ss_pred CCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 112 DGRLSHGDLKSYMNCAG--FAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 112 ~g~I~~~e~~~~l~~~~--~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
||.++..|...+-..+. ..+++.+...++..+........++.+|.+.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57777777766654321 246667777777666554444566777766654
No 159
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.81 E-value=3.2 Score=31.22 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=48.7
Q ss_pred hhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 16 PSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 16 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
-..+++.|+.+|+.++|+|+.+-++.++..++.-.-..+.+..+-..+|+..-|.|-..+|...+...
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p~ 375 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFPT 375 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccCc
Confidence 45789999999999999999999999999887322033444444455666666777666666655443
No 160
>PLN02223 phosphoinositide phospholipase C
Probab=71.56 E-value=38 Score=27.20 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=49.7
Q ss_pred CCCCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHH---HhcCCC-CCCHHHHHHHHHhhcCC--------CCCcccHHH
Q 031051 8 LRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFY---AGRRAS-EEDGDVIGTMISVADFN--------KDGYVEYDE 75 (166)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l---~~~~~~-~~~~~~~~~~~~~~d~~--------~~g~i~~~e 75 (166)
.+......-..+..+|..+- .+.|.++.+.+..+| ...... ..+.+.++.++..+-.. ..+.++++.
T Consensus 7 ~~~~~~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~ 85 (537)
T PLN02223 7 FEMHPANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDH 85 (537)
T ss_pred CCCCCCCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHH
Confidence 33444445667888999994 668899999999998 432221 11566666666654222 125699999
Q ss_pred HHHHHHHH
Q 031051 76 FERVLDLE 83 (166)
Q Consensus 76 f~~~~~~~ 83 (166)
|..++...
T Consensus 86 f~~~L~s~ 93 (537)
T PLN02223 86 LNEFLFST 93 (537)
T ss_pred HHHHhcCc
Confidence 99999664
No 161
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=71.40 E-value=6.9 Score=16.34 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=8.4
Q ss_pred CCCCCCcccHHHHHHH
Q 031051 27 DADRDGKISRDDLRAF 42 (166)
Q Consensus 27 D~~~~g~i~~~e~~~~ 42 (166)
|.+++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 3455666666555443
No 162
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=71.29 E-value=22 Score=22.07 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=39.5
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q 031051 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLL 157 (166)
Q Consensus 101 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~ 157 (166)
..+|-+.-.-+...+|.++++.++...|.+..+..+..+++.+.. .+.++.+
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELI 57 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELI 57 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHH
Confidence 345555556666789999999999999999999888888888742 3455554
No 163
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=70.20 E-value=34 Score=23.89 Aligned_cols=38 Identities=24% Similarity=0.073 Sum_probs=21.0
Q ss_pred CCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCC
Q 031051 111 GDGRLSHGDLKSYMNCAG---FAATDDDIKAMIRLGGGDEN 148 (166)
Q Consensus 111 ~~g~I~~~e~~~~l~~~~---~~~s~~~~~~~~~~~d~~~~ 148 (166)
+.|.|+..|+...+.+.. ..+|++++...++.+..-+.
T Consensus 110 ~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~ 150 (223)
T PF04157_consen 110 NGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGL 150 (223)
T ss_dssp TTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTS
T ss_pred CCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCC
Confidence 336666666666666532 24566666666666554443
No 164
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=69.72 E-value=11 Score=18.92 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=21.5
Q ss_pred hhhHHHHHHHhC-C-CCCCcccHHHHHHHHHh
Q 031051 16 PSRLKPAFDVID-A-DRDGKISRDDLRAFYAG 45 (166)
Q Consensus 16 ~~~l~~~f~~~D-~-~~~g~i~~~e~~~~l~~ 45 (166)
+..+-.+|+.|- . +....|+..||+.++..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345677888874 2 34668999999998874
No 165
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=69.65 E-value=41 Score=28.24 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=76.3
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCC-CCcccHHHHHHHHHHHhccccCCC-----ccCCcccHHHHHHHhhC
Q 031051 35 SRDDLRAFYAGRRASEEDGDVIGTMISVADFNK-DGYVEYDEFERVLDLEYGKANSKS-----KSNGGGGLMEDVFKVMD 108 (166)
Q Consensus 35 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~~~~~~~~~~~~~-----~~~~~~~~~~~~F~~~D 108 (166)
+.-.|..+-+.+..+...-..+..+|.+.+..+ +..++..+.+.++...+...-... ..-.....+...+++||
T Consensus 401 tAmKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD 480 (966)
T KOG4286|consen 401 TAMKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYD 480 (966)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcc
Confidence 344566666666666656666777887776543 445666666666655433111111 22223445677889999
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCC
Q 031051 109 KDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148 (166)
Q Consensus 109 ~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~ 148 (166)
...+|.|..-+|+-.+..+.....++...-+|+....++.
T Consensus 481 ~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~s 520 (966)
T KOG4286|consen 481 TGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTS 520 (966)
T ss_pred cCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchh
Confidence 9999999999999999988777777788889998765554
No 166
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=68.60 E-value=15 Score=24.07 Aligned_cols=90 Identities=13% Similarity=0.269 Sum_probs=53.2
Q ss_pred hhhHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCCCC---CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccc
Q 031051 16 PSRLKPAFDVI----DADRDG-KISRDDLRAFYAGRRASE---EDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKA 87 (166)
Q Consensus 16 ~~~l~~~f~~~----D~~~~g-~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 87 (166)
...+++.|+.| |+..+| .|+-..|..+++..+.-- .+..++.-.|..+....-..++|++|...+..+...
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~- 89 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATK- 89 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHh-
Confidence 34455555554 333344 578888888888654321 155566667766655556789999998888777321
Q ss_pred cCCCccCCcccHHHHHHHhhC
Q 031051 88 NSKSKSNGGGGLMEDVFKVMD 108 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~F~~~D 108 (166)
+.......+.+..+.+.+.
T Consensus 90 --R~k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 90 --RFKGKSKEEALDAICQLLA 108 (180)
T ss_pred --hhcCCCHHHHHHHHHHHHh
Confidence 1222333445555555544
No 167
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=67.72 E-value=7.1 Score=22.55 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=22.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Q 031051 111 GDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGD 146 (166)
Q Consensus 111 ~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~ 146 (166)
..|+||.+++..+|.... ++++.++.++..+...
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHHC
Confidence 468999999999988654 7888899888875443
No 168
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=67.71 E-value=18 Score=27.18 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 112 DGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 112 ~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
.|.||++|-...++.......++.++.+++.++ ||.+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 577777777777777655555667777777764 6667776654
No 169
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=66.44 E-value=58 Score=25.13 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=68.4
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH---
Q 031051 2 CPTGTALRPRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER--- 78 (166)
Q Consensus 2 ~p~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~--- 78 (166)
+|.|....+.-.-..+.....|+..=. ....+....|.+.|....... +.-+...+-..+|-..++.|+--||--
T Consensus 160 FP~G~~~gd~friTKadA~~FWr~~fg-~k~ivPW~~F~q~L~~~Hpi~-~gleAmaLktTIDLtcnd~iS~FEFDvFTR 237 (563)
T KOG1785|consen 160 FPNGIYQGDRFRITKADAAEFWRKHFG-KKTIVPWKTFRQALHKVHPIS-SGLEAMALKTTIDLTCNDFISNFEFDVFTR 237 (563)
T ss_pred CCCCeeecceeeeccccHHHHHHHhcC-CcccccHHHHHHHHHhcCCCc-chhHHHHhhceeccccccceeeehhhhHHH
Confidence 355555554444344444555555533 345688888888888765444 555666677778888888877666543
Q ss_pred HHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCc---ccHHHHHHHHHHc
Q 031051 79 VLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGR---LSHGDLKSYMNCA 127 (166)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~---I~~~e~~~~l~~~ 127 (166)
++... ..+.+-|+.+...+-|| ++.+|++.-+..+
T Consensus 238 LFqPw--------------~tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 238 LFQPW--------------KTLLKNWQTLAVTHPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred hhccH--------------HHHHHhhhhhhccCCceeEEeeHHHHHHHHHHH
Confidence 33333 44455566666677776 6788888877764
No 170
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.28 E-value=16 Score=30.05 Aligned_cols=80 Identities=16% Similarity=0.324 Sum_probs=56.5
Q ss_pred CCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHc---C-----CCCCHHHHHHH
Q 031051 68 DGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCA---G-----FAATDDDIKAM 139 (166)
Q Consensus 68 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~---~-----~~~s~~~~~~~ 139 (166)
++ ++++||. . .....+..++..|..+|. .+|.++.+++..++... + ...+.+-...+
T Consensus 2 ~~-~~~~~~~-----~--------~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (646)
T KOG0039|consen 2 EG-ISFQELK-----I--------TDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALI 66 (646)
T ss_pred CC-cchhhhc-----c--------cCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHh
Confidence 45 7888887 1 334456788999999998 89999999999998763 1 12233345556
Q ss_pred HHhhcCCCCCcccHHHHHHHHHh
Q 031051 140 IRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 140 ~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
++..+.+..|.+.+.++..++..
T Consensus 67 ~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 67 MEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred hhhccccccceeeecchhHHHHh
Confidence 67777888888877777666543
No 171
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.12 E-value=47 Score=23.95 Aligned_cols=114 Identities=14% Similarity=0.053 Sum_probs=70.5
Q ss_pred CchhhHHHHHHHh-CCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhc-------
Q 031051 14 AKPSRLKPAFDVI-DADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYG------- 85 (166)
Q Consensus 14 ~~~~~l~~~f~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~------- 85 (166)
.....+.+.|..+ |+..+..|-.+-+..++..+|..+ ..-.+.-+.-.+....-+..+-++|+.-+..+--
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p-~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq 139 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEP-EDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQ 139 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCc-hhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHH
Confidence 4455677778776 777667999999999999999988 4444444555566666788999999886655411
Q ss_pred ----cccCCC-ccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcC
Q 031051 86 ----KANSKS-KSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAG 128 (166)
Q Consensus 86 ----~~~~~~-~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 128 (166)
...... .........+.+|......+.-.|+.+.-..++.-++
T Consensus 140 ~~l~~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll~ 187 (260)
T KOG3077|consen 140 QRLDFLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLLF 187 (260)
T ss_pred HHHHHHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHHh
Confidence 000000 0111122334455554444445677777777776654
No 172
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=65.95 E-value=4.1 Score=25.86 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=42.0
Q ss_pred CCCcccHHHHHHHHHhc--CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhh
Q 031051 30 RDGKISRDDLRAFYAGR--RASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVM 107 (166)
Q Consensus 30 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 107 (166)
-||.++.+|...+...+ .... +......+...++......+++.+|+..+.... ........+..++...
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~r~~ll~~l~~ia 107 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGL-SPEEAEELIELADELKQEPIDLEELLRELRDSL-------SPEEREDLLRMLIAIA 107 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCG-SCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS---------HHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh-------chHHHHHHHHHHHHHH
Confidence 47889999888776654 1122 445555555555443334567777766554421 1122234566667777
Q ss_pred CCCCCCcccHHH
Q 031051 108 DKDGDGRLSHGD 119 (166)
Q Consensus 108 D~~~~g~I~~~e 119 (166)
-.|| .++..|
T Consensus 108 ~ADG--~~~~~E 117 (140)
T PF05099_consen 108 YADG--EISPEE 117 (140)
T ss_dssp TCTT--C-SCCH
T ss_pred hcCC--CCCHHH
Confidence 6654 455444
No 173
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=65.72 E-value=18 Score=19.58 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=27.7
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRLGG 144 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d 144 (166)
-.+|.+|+..++..++..++..++-.++...-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 36899999999999999999999988888753
No 174
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.85 E-value=12 Score=28.63 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q 031051 99 LMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLL 157 (166)
Q Consensus 99 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~ 157 (166)
....+|..+.+ -+|+|+...-+.-|.... +....+-.+++..|.+.+|.++-+||.
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv~sk--lpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMVKSK--LPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHHhcc--CchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 34566766654 358999888887776654 677789999999999999999999996
No 175
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=63.68 E-value=2.7 Score=28.76 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=38.1
Q ss_pred HHHhhCC-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 103 VFKVMDK-DGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 103 ~F~~~D~-~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
-|-.+|. ..+|++|..|+.-+-..+ + .-+.=+..+|+.+|.|++|.|+.+||-..+
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~-i-pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPL-I-PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeccccCCCccccccccccccccCCc-c-cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3445554 368999988875543332 1 112235668889999999999999998765
No 176
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=63.49 E-value=23 Score=19.51 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 112 DGRLSHGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 112 ~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
...|+.+-++..+...|-+.|+..+..+.+.+
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 35799999999999999999999999988765
No 177
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=62.80 E-value=14 Score=20.32 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCC
Q 031051 112 DGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDE 147 (166)
Q Consensus 112 ~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~ 147 (166)
++.++..++.+.+...|..+|++.+..-++.++.++
T Consensus 11 ~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 11 DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 467999999999998899999999999888887654
No 178
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=62.73 E-value=22 Score=26.64 Aligned_cols=95 Identities=11% Similarity=0.107 Sum_probs=58.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC-------
Q 031051 57 GTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGF------- 129 (166)
Q Consensus 57 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~------- 129 (166)
..+++.+|..+.|.++-.-..-.+... ......+.++.+|.+... ..|.+..-.+.+++.+.-.
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatl--------c~gk~~dklryIfs~isd-s~gim~~i~~~~fl~evlslpT~v~e 183 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATL--------CGGKIKDKLRYIFSLISD-SRGIMQEIQRDQFLHEVLSLPTAVFE 183 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhh--------ccchHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHcCCchhhc
Confidence 345566777777766554444444333 223346778899998864 4577777777777776321
Q ss_pred ----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhhc
Q 031051 130 ----AATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDTV 165 (166)
Q Consensus 130 ----~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 165 (166)
..++.-++..|. ...+++++.|++-+..+|+
T Consensus 184 ~psfg~te~~a~~cf~-----qqrKv~Ln~fldtl~sdp~ 218 (434)
T KOG4301|consen 184 GPSFGYTELSARLCFL-----QQRKVELNQFLDTLMSDPP 218 (434)
T ss_pred CCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCC
Confidence 123333333333 3457899999999988875
No 179
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=62.43 E-value=9.3 Score=23.77 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=23.0
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 031051 52 DGDVIGTMISVADFNKDGYVEYDEFERVLDL 82 (166)
Q Consensus 52 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 82 (166)
++++.+.++..+-.+..|+|.|.+|+.-+..
T Consensus 5 tDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 5 TDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp -HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 7889999999988899999999999988763
No 180
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=61.39 E-value=3.7 Score=28.13 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=40.9
Q ss_pred HHHhCC-CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 031051 23 FDVIDA-DRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDL 82 (166)
Q Consensus 23 f~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 82 (166)
|-.+|. ..+|++|-.|+.-+-..+ .+ ...=+...+...|.+.|+.|.++|+-.++.-
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~--ip-me~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL--IP-MEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eccccCCCccccccccccccccCCc--cc-HHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 455665 568999998886554322 23 4555567888899999999999999877743
No 181
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=61.36 E-value=36 Score=20.98 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 031051 102 DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159 (166)
Q Consensus 102 ~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~ 159 (166)
.+|-++-..+...+|.++++.++...|....+.-+..+++.+.. .+.++.+.-
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~ 57 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAA 57 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 34555555667789999999999999999988888888887742 355665543
No 182
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.18 E-value=27 Score=19.56 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031051 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGG 144 (166)
Q Consensus 101 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d 144 (166)
++.++.+=++ +..|+.+-++.++...|-..|+..+.++.+...
T Consensus 26 rk~~~k~lk~-NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 26 RKQMKKQLKD-NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHHhh-CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3444443333 358999999999999999999999999988753
No 183
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=60.03 E-value=17 Score=19.85 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHH
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIKAMI 140 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~~~~ 140 (166)
.|+.++|..+++...-.++.+++...-
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 589999999999988888888877643
No 184
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=58.75 E-value=45 Score=25.13 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhc
Q 031051 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYG 85 (166)
Q Consensus 19 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 85 (166)
+.-+...+|+.+.|.++..-.+..+..++.+. -...++-||... .+..|.+.+-.|..++...+.
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~gk-~~dklryIfs~i-sds~gim~~i~~~~fl~evls 176 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCGGK-IKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLS 176 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhccch-HHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHc
Confidence 34444567999999999999999999888877 777788888887 455788888888888877754
No 185
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=58.71 E-value=8.3 Score=34.95 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=53.4
Q ss_pred CCCCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCC---CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 10 PRDAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEE---DGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 10 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..++..++++.++|..+|++..|+|...++..+++.+...+. .++. +.+.-..-...++.|++.+.+..+.+.
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 567789999999999999999999999999999997654331 1111 112112223467889999888888766
No 186
>PRK00523 hypothetical protein; Provisional
Probab=58.12 E-value=32 Score=19.43 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=28.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
..|+.+-++..+...|-+.|+..+..+.+.+
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 5799999999999999999999999998876
No 187
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=57.94 E-value=24 Score=17.86 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 031051 118 GDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159 (166)
Q Consensus 118 ~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~ 159 (166)
+|....+..+| +++.++..+++.... ...++.++.++.
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 57777888888 888999999988764 234566666643
No 188
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=57.52 E-value=32 Score=19.18 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 34 ISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 34 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
++.+++..++...+... +.+++..++..-+..+.-..+-..+..++..+
T Consensus 14 l~d~~m~~if~l~~~~v-s~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEV-SKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCcc-CHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 44566777777766666 78888877776555444445555555555444
No 189
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=56.43 E-value=40 Score=19.99 Aligned_cols=63 Identities=11% Similarity=0.146 Sum_probs=39.4
Q ss_pred hhHHHHHHHhCCCCCCcccHHHHHHHHHh-------cCCCCC---CHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 031051 17 SRLKPAFDVIDADRDGKISRDDLRAFYAG-------RRASEE---DGDVIGTMISVADFNKDGYVEYDEFERVLDL 82 (166)
Q Consensus 17 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~-------~~~~~~---~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 82 (166)
+.++-+|..+ .+++|.++...|..+|.. ++-.+. ....++..|... .....|+..+|+.-+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 4677889888 778999999999888763 222221 566667777765 24567999999988753
No 190
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=55.52 E-value=34 Score=27.01 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=57.2
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhh---cC-----CCCCcccHHHHHHHHHHHhc-------c
Q 031051 22 AFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVA---DF-----NKDGYVEYDEFERVLDLEYG-------K 86 (166)
Q Consensus 22 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~~~~~~~-------~ 86 (166)
+|..+-..+++.++...|-.+|++.|+.. +.+.+..++..+ +. .+-+.++-+.|..+...... .
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrt-sDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrk 169 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRT-SDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRK 169 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCc-CCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhc
Confidence 56677555689999999999999999988 888777777543 32 12356888888777644211 1
Q ss_pred ccCCCccCCcccHHHHHHHhhCCCCCC
Q 031051 87 ANSKSKSNGGGGLMEDVFKVMDKDGDG 113 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~F~~~D~~~~g 113 (166)
......=......+..+|+..-....|
T Consensus 170 qmVIPdw~~Fts~I~tIFEscke~seG 196 (622)
T KOG0506|consen 170 QMVIPDWEEFTSHIDTIFESCKESSEG 196 (622)
T ss_pred CccCCcHHHHHHHHHHHHHHHHhcCCc
Confidence 111111122244566677666544444
No 191
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=54.67 E-value=14 Score=22.44 Aligned_cols=49 Identities=8% Similarity=0.169 Sum_probs=30.2
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHH---HHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDI---KAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~---~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
-.++.+|++.++..+|. ..-+ ...++.++.+....++.++.+.+|..+|
T Consensus 34 ~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p 85 (105)
T cd03035 34 DGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHP 85 (105)
T ss_pred CCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCc
Confidence 36888899998888761 1111 1233333333223578899999988876
No 192
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=54.66 E-value=49 Score=20.41 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 19 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
+...|..++..++...+..++..+|...|... ..+.+..++..+. |+ +.+|.+.-=...
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~-d~e~i~~visel~----GK-~i~ElIA~G~ek 61 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEI-DDERINLVLSELK----GK-DIEELIAAGREK 61 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCccc-CHHHHHHHHHHhc----CC-CHHHHHHHhHHH
Confidence 34566777788888999999999999999988 8999999998872 33 667776655444
No 193
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.70 E-value=38 Score=27.97 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCC
Q 031051 31 DGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKD 110 (166)
Q Consensus 31 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~ 110 (166)
+| |+.+++. ..... .++.++.++..+|. ++|.++-+++..++.....-...........+....+++..|.+
T Consensus 2 ~~-~~~~~~~-----~~~~~-~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCS-YDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-----ccCCC-hhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 7777777 11122 56677777887776 78888888888877666433332222333345556788889999
Q ss_pred CCCcccHHHHHHHHHHc
Q 031051 111 GDGRLSHGDLKSYMNCA 127 (166)
Q Consensus 111 ~~g~I~~~e~~~~l~~~ 127 (166)
..|++...++..++...
T Consensus 74 ~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQI 90 (646)
T ss_pred ccceeeecchhHHHHhc
Confidence 99999988888887754
No 194
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=53.12 E-value=38 Score=26.82 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=49.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh---hcC-----CCCCcccHHHHHHHHHh
Q 031051 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL---GGG-----DENDGVSFDGLLKILAV 162 (166)
Q Consensus 100 ~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~---~d~-----~~~g~i~~~eF~~~~~~ 162 (166)
-..+|..+-...++.|+.-.|..+|+.+|...++.-+..++.. ++. ...+.++.+.|.+++..
T Consensus 88 eDLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 88 EDLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 3457888877778999999999999999999888877777754 332 23456888899888754
No 195
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=52.89 E-value=49 Score=21.31 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=38.2
Q ss_pred CCCcccHHHHHHHHHHcC---------CCCCHHHHHHHHHhhcCCCCC-cccHHHHHHH
Q 031051 111 GDGRLSHGDLKSYMNCAG---------FAATDDDIKAMIRLGGGDEND-GVSFDGLLKI 159 (166)
Q Consensus 111 ~~g~I~~~e~~~~l~~~~---------~~~s~~~~~~~~~~~d~~~~g-~i~~~eF~~~ 159 (166)
|+-.||.+||.+++..-. +.+.++++..+.+.+.....+ .++..|-++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 567899999999998631 256888999999988876655 4998887764
No 196
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=51.92 E-value=33 Score=23.33 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 108 DKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 108 D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
..+.+|++..+++-+.+..-+..++.+++..++..-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 467889999999999988877778899999999763
No 197
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=51.81 E-value=54 Score=20.06 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 115 LSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 115 I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
||.++++.++...|.+..+.-+..+++.+.+ .+.++.+.-.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHHH
Confidence 9999999999999999999988888888732 4556666544
No 198
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=51.69 E-value=48 Score=19.45 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 31 DGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 31 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
+-.++-.+|...|.....-. ...+...+-..+|-..++.|+.-||--+.+-.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~-~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPIS-SGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--S-SHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred CeEeeHHHHHHHHHHhcCCC-chHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 35699999999999876655 66777888889999999999999987766443
No 199
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=51.16 E-value=34 Score=17.63 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=30.9
Q ss_pred ccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 97 GGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 97 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
...|...|.. +.+.+.+++..+...+| ++...|...|..
T Consensus 12 ~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 12 LEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 3456667766 45899999999999988 888899988875
No 200
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=48.19 E-value=59 Score=19.45 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=25.7
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
+.++.+|..+- ..|...+++++.+.+| +|+.+|+.+-..
T Consensus 4 ~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~ 42 (96)
T cd08315 4 ETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKAN 42 (96)
T ss_pred hHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 45666666663 2466777888878777 666666666555
No 201
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=47.85 E-value=24 Score=21.87 Aligned_cols=13 Identities=8% Similarity=0.279 Sum_probs=7.2
Q ss_pred ccHHHHHHHHHhh
Q 031051 151 VSFDGLLKILAVD 163 (166)
Q Consensus 151 i~~~eF~~~~~~~ 163 (166)
+||++|..-++.+
T Consensus 99 ~s~~~~r~~ir~~ 111 (118)
T PF09312_consen 99 ISYEEYREQIRKQ 111 (118)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6777777666553
No 202
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=47.81 E-value=67 Score=19.98 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=32.4
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031051 103 VFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGG 144 (166)
Q Consensus 103 ~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d 144 (166)
+|-+.-..+...+|.++++.++...|......-+..+++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 344444455567999999999999999888888888887774
No 203
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=47.64 E-value=54 Score=22.20 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=28.8
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 108 DKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 108 D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
..+.+|++..+++.+.++.-+..++.+++.+++..
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 45788999999999888765566899999988876
No 204
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=47.21 E-value=71 Score=20.48 Aligned_cols=82 Identities=11% Similarity=0.131 Sum_probs=37.4
Q ss_pred CCcccHHHHHHHHHHHhccccCCCccCCcccHHH-HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh---h
Q 031051 68 DGYVEYDEFERVLDLEYGKANSKSKSNGGGGLME-DVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL---G 143 (166)
Q Consensus 68 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~-~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~---~ 143 (166)
+..|+..+|...+........... ....++ .+.+ ..|...=+.+..+..|...|+.+++..+.. +
T Consensus 47 g~~It~~e~~~~~~~~~~~~~~~~----~~~~~~~~~l~-------~lI~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f 115 (154)
T PF13624_consen 47 GEKITKSELDRRVQRYSRQYQQQE----DEDQLKQQVLD-------QLIDQKLLLQEAKKLGISVSDAEVDDAIKQIPAF 115 (154)
T ss_dssp TEEEEHHHHHHHHHHHHHHTT-------TTS-HHHHHHH-------HHHHHHHHHHHHHHTT----HHHHHHHHHH--HH
T ss_pred CEEeCHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 456999998887765422111100 111111 1111 234444455555667888888888877766 2
Q ss_pred cCCCCCcccHHHHHHHHHh
Q 031051 144 GGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 144 d~~~~g~i~~~eF~~~~~~ 162 (166)
.. +|..+-+.|..++..
T Consensus 116 ~~--~g~~~~~~f~~~L~~ 132 (154)
T PF13624_consen 116 QE--NGKFDKEAFEEFLKQ 132 (154)
T ss_dssp HH--H----HHHHHHHHH-
T ss_pred HH--CCCCCHHHHHHHHHH
Confidence 22 255566666666543
No 205
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=47.10 E-value=42 Score=20.11 Aligned_cols=30 Identities=7% Similarity=0.209 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
.|+.++++++.+-....+++++++.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 578888998888777788888877666554
No 206
>PRK01844 hypothetical protein; Provisional
Probab=46.45 E-value=54 Score=18.54 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=28.3
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
..|+.+-++..+...|-+.|+..+..+.+..
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 5799999999999999999999999998876
No 207
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=46.02 E-value=58 Score=18.74 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhcCC-CCCcccHHHHHHHH
Q 031051 117 HGDLKSYMNCAGFAATDDDIKAMIRLGGGD-ENDGVSFDGLLKIL 160 (166)
Q Consensus 117 ~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~-~~g~i~~~eF~~~~ 160 (166)
.+++.+.| .|..++.+.+.+.+...+.. --+.++.++|++++
T Consensus 44 i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 55666665 46778999999999987554 34578999998765
No 208
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=1e+02 Score=21.26 Aligned_cols=79 Identities=11% Similarity=0.166 Sum_probs=45.7
Q ss_pred CCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHH-HHHHHHHcCCCCCHHHHHHHHHh-h
Q 031051 66 NKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGD-LKSYMNCAGFAATDDDIKAMIRL-G 143 (166)
Q Consensus 66 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e-~~~~l~~~~~~~s~~~~~~~~~~-~ 143 (166)
+=||+|+..++...+...+.+ ..+..+++.+ -+++||..+ |..++..++ .+.+|+-+.+.. .
T Consensus 9 DFDGTITl~Ds~~~itdtf~~-----------~e~k~l~~~v---ls~tiS~rd~~g~mf~~i~--~s~~Eile~llk~i 72 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGP-----------GEWKALKDGV---LSKTISFRDGFGRMFGSIH--SSLEEILEFLLKDI 72 (220)
T ss_pred cCCCceEecchhHHHHhccCc-----------hHHHHHHHHH---hhCceeHHHHHHHHHHhcC--CCHHHHHHHHHhhc
Confidence 447999999999988766322 2334444443 345676433 333444444 444555555444 4
Q ss_pred cCCCCCcccHHHHHHHHHhhh
Q 031051 144 GGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 144 d~~~~g~i~~~eF~~~~~~~~ 164 (166)
..+. .+.+|...+..+.
T Consensus 73 ~Idp----~fKef~e~ike~d 89 (220)
T COG4359 73 KIDP----GFKEFVEWIKEHD 89 (220)
T ss_pred ccCc----cHHHHHHHHHHcC
Confidence 4443 5788888776654
No 209
>PF13592 HTH_33: Winged helix-turn helix
Probab=44.05 E-value=51 Score=17.56 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhc
Q 031051 113 GRLSHGDLKSYMNC-AGFAATDDDIKAMIRLGG 144 (166)
Q Consensus 113 g~I~~~e~~~~l~~-~~~~~s~~~~~~~~~~~d 144 (166)
+..+..++..++.. +|..++..-+..+++.+.
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 45667777777774 688888888888887754
No 210
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=43.85 E-value=54 Score=19.27 Aligned_cols=28 Identities=11% Similarity=0.238 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 115 LSHGDLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 115 I~~~e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
|+.++++++.+-....+++++++.+...
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4566777777766677777776665554
No 211
>PHA02335 hypothetical protein
Probab=43.07 E-value=78 Score=19.41 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=36.3
Q ss_pred CCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCC--cccHHHHHHHHHHcCC
Q 031051 68 DGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDG--RLSHGDLKSYMNCAGF 129 (166)
Q Consensus 68 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g--~I~~~e~~~~l~~~~~ 129 (166)
-..|++++|..=++.. +.+++.|+.|...++- ++-...+..++..+|.
T Consensus 22 p~sVt~ddf~~DlkRi--------------~yIkrllKRy~~~~~~k~hlIlNhlI~l~NvF~e 71 (118)
T PHA02335 22 PQSVTYDDFEEDLKRF--------------KYIKRLFKRYLNTGELKTHLILNHIIILYNVFGE 71 (118)
T ss_pred cccccHHHHHHHHHHH--------------HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhh
Confidence 3569999999999888 8899999999987766 4555555555555553
No 212
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=42.68 E-value=56 Score=20.20 Aligned_cols=29 Identities=3% Similarity=0.291 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 115 LSHGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 115 I~~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
-+.+|++.++......++++++++++...
T Consensus 79 ~~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 79 ETRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 35677777777776677777777776543
No 213
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=42.60 E-value=44 Score=17.55 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=22.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 031051 111 GDGRLSHGDLKSYMNCAGFAATDDDIKAMIR 141 (166)
Q Consensus 111 ~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~ 141 (166)
..|.|+.+||..-+...-...+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 4689999999988887655556666666654
No 214
>PHA02105 hypothetical protein
Probab=42.42 E-value=56 Score=17.53 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHhcCCCC--CCHHHHHHHHHhhcCCC--CCcccHHHHHHHHH
Q 031051 33 KISRDDLRAFYAGRRASE--EDGDVIGTMISVADFNK--DGYVEYDEFERVLD 81 (166)
Q Consensus 33 ~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~~~ 81 (166)
.++.++|..++..-.... ...+.+..+-..+...+ ---++|+||.+++-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 477888888887654432 15555666655554433 34588999988773
No 215
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.40 E-value=51 Score=16.76 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=20.4
Q ss_pred CCccc-HHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 112 DGRLS-HGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 112 ~g~I~-~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
.|.|+ ..++-+.|...|..+++..++.+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 46665 333344445568888888888877654
No 216
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.93 E-value=47 Score=25.60 Aligned_cols=57 Identities=23% Similarity=0.404 Sum_probs=44.5
Q ss_pred hHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 031051 18 RLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFER 78 (166)
Q Consensus 18 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 78 (166)
.+-++|..+.+ -+|+|+-..-+..+-.. .+ .+..+..++...|.+.||.++-+||.-
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv~s--kl-pnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMVKS--KL-PNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHHhc--cC-chhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 45566777654 48899988888777542 34 788889999999999999999999953
No 217
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=39.73 E-value=60 Score=17.14 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 119 DLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 119 e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
|.+..+...|+.+|.+.++.++..
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L 39 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQL 39 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHH
Confidence 466777778888888887776654
No 218
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=39.67 E-value=70 Score=18.83 Aligned_cols=30 Identities=7% Similarity=0.211 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
.|+.++++++.+-....+++++++.+.+.+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 377788888888777888888766665543
No 219
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=38.90 E-value=63 Score=18.67 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=17.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIKAMIR 141 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~~~~~ 141 (166)
.++..+++++.+.+| +|+.+|+.+-.
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~ 33 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVEL 33 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 466677777777777 66666666544
No 220
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=38.60 E-value=94 Score=25.00 Aligned_cols=47 Identities=13% Similarity=0.480 Sum_probs=37.4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCC
Q 031051 101 EDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDE 147 (166)
Q Consensus 101 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~ 147 (166)
...-..++..|.|.++.+|..++|..++..-..-++++++++...|.
T Consensus 458 ~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~nd 504 (548)
T PF02459_consen 458 RDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALND 504 (548)
T ss_pred HHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcch
Confidence 44455667888889999999999999887766668889999876654
No 221
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=37.98 E-value=70 Score=17.40 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=16.9
Q ss_pred CcccHHHHHHHHHHc-CCCCCHHHHHHHHHhh
Q 031051 113 GRLSHGDLKSYMNCA-GFAATDDDIKAMIRLG 143 (166)
Q Consensus 113 g~I~~~e~~~~l~~~-~~~~s~~~~~~~~~~~ 143 (166)
..++.+|.+.++..+ ....++.++..++..+
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al 44 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFLMAL 44 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467777777777763 4466776766666553
No 222
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=37.74 E-value=52 Score=18.96 Aligned_cols=23 Identities=4% Similarity=0.049 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Q 031051 119 DLKSYMNCAGFAATDDDIKAMIR 141 (166)
Q Consensus 119 e~~~~l~~~~~~~s~~~~~~~~~ 141 (166)
|+-.+++.+|..+++++..-+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 66778888999999988655443
No 223
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=37.64 E-value=89 Score=18.48 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=43.7
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCC
Q 031051 30 RDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDK 109 (166)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~ 109 (166)
-||.++.+|...+-.-+............+...+........++.+|...+...... ........+..+|...-.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~r~~~l~~l~~vA~A 86 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGG-----RPELLLQLLEFLFQIAYA 86 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHH
Confidence 378888888766644332222133333344444433223336778888877664210 111123344555555543
Q ss_pred CCCCcccHHHHHHH
Q 031051 110 DGDGRLSHGDLKSY 123 (166)
Q Consensus 110 ~~~g~I~~~e~~~~ 123 (166)
||.++..|-.-+
T Consensus 87 --DG~~~~~E~~~l 98 (106)
T cd07316 87 --DGELSEAERELL 98 (106)
T ss_pred --cCCCCHHHHHHH
Confidence 367777665433
No 224
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=37.59 E-value=1.2e+02 Score=19.92 Aligned_cols=50 Identities=8% Similarity=0.112 Sum_probs=35.1
Q ss_pred CchhhHHHHHHHhCCCCCCcccHHHHHHHHH----hcCCCCCCHHHHHHHHHhh
Q 031051 14 AKPSRLKPAFDVIDADRDGKISRDDLRAFYA----GRRASEEDGDVIGTMISVA 63 (166)
Q Consensus 14 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~----~~~~~~~~~~~~~~~~~~~ 63 (166)
..+..+.......|..+.+|||.++++.++- .++...+.++.+..+-...
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee~Lrql~~~~ 119 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEEQLRQLQQQK 119 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3556777778888999889999999998865 3444443555555555543
No 225
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=37.43 E-value=63 Score=19.23 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=41.5
Q ss_pred CCCcccHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHH
Q 031051 30 RDGKISRDDLRAFYAGRRA----SEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFK 105 (166)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 105 (166)
-+|.++.+|...+...+.. .......+..++...-..- ...+..++...+.... ........+..++.
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~r~~~~~~~~~ 86 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLL-------PPELRETAFAVAVD 86 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhC-------CHHHHHHHHHHHHH
Confidence 3788888888877775532 1113444555554432210 0234566666666551 11122233445555
Q ss_pred hhCCCCCCcccHHHHH
Q 031051 106 VMDKDGDGRLSHGDLK 121 (166)
Q Consensus 106 ~~D~~~~g~I~~~e~~ 121 (166)
....| |.++..|-.
T Consensus 87 ia~aD--G~~~~~E~~ 100 (111)
T cd07176 87 IAAAD--GEVDPEERA 100 (111)
T ss_pred HHHcc--CCCCHHHHH
Confidence 55544 566665543
No 226
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=36.94 E-value=49 Score=15.32 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=12.8
Q ss_pred CCcccHHHHHHHHHHH
Q 031051 68 DGYVEYDEFERVLDLE 83 (166)
Q Consensus 68 ~g~i~~~ef~~~~~~~ 83 (166)
.|.|++.+++.+....
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5778888888888765
No 227
>PF14164 YqzH: YqzH-like protein
Probab=36.46 E-value=78 Score=17.47 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=30.5
Q ss_pred ccHHHHHHHhhCCC-CCCcccHHHHHHHHHHcC---CCCCHHHHHHHHH
Q 031051 97 GGLMEDVFKVMDKD-GDGRLSHGDLKSYMNCAG---FAATDDDIKAMIR 141 (166)
Q Consensus 97 ~~~~~~~F~~~D~~-~~g~I~~~e~~~~l~~~~---~~~s~~~~~~~~~ 141 (166)
.+.++.+|++|..+ ..-.++..|++.+...+. ..-++.++.+++.
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVe 55 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVE 55 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 35678899999877 667899999988877652 1223334555544
No 228
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=36.21 E-value=93 Score=18.28 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=37.3
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 32 GKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 32 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
..||..||..+-+..+... +.+.+..++.......-.-.+-.+=..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~i-t~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISI-TKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 4588999999999888888 88888888888755554445555555555544
No 229
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=35.99 E-value=1.1e+02 Score=18.89 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLL 157 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~ 157 (166)
.||.+.++.++...|....+.-+..+++.+.+ ++.++.+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G-----kdIeElI 54 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED-----VNIEEAI 54 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHH
Confidence 79999999999999999999888888887642 4455554
No 230
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=35.11 E-value=66 Score=16.24 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHcCCCCCHHHH
Q 031051 116 SHGDLKSYMNCAGFAATDDDI 136 (166)
Q Consensus 116 ~~~e~~~~l~~~~~~~s~~~~ 136 (166)
+.+++..+.+..|..++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 567888888888988888765
No 231
>COG5562 Phage envelope protein [General function prediction only]
Probab=34.87 E-value=38 Score=21.74 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=18.7
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHH
Q 031051 59 MISVADFNKDGYVEYDEFERVLDLE 83 (166)
Q Consensus 59 ~~~~~d~~~~g~i~~~ef~~~~~~~ 83 (166)
+-.....++.|..+|+||++.+...
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHhC
Confidence 3334445678999999999998664
No 232
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.68 E-value=1.3e+02 Score=19.41 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=31.5
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
..-..+++.+-....+++|.+|+.+.+..-+..++..-+...+..
T Consensus 17 ~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~ 61 (148)
T PRK09462 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQ 61 (148)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 444555666654455789999999999887777777766665554
No 233
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=34.50 E-value=1.1e+02 Score=24.07 Aligned_cols=86 Identities=14% Similarity=0.240 Sum_probs=52.9
Q ss_pred CCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhc
Q 031051 66 NKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNC-AGFAATDDDIKAMIRLGG 144 (166)
Q Consensus 66 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~-~~~~~s~~~~~~~~~~~d 144 (166)
.++...+-.||+........- ....-..+.++.+-+..|.|.+|.|..+|-..++++ +...-+..--.+-|+.
T Consensus 40 agds~at~nefc~~~~~~c~s----~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~-- 113 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKS----EQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG-- 113 (575)
T ss_pred cCCchhhhccchhcCCchhhc----ccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC--
Confidence 466677777786554333100 112334567888999999999999999999999986 4333222222223332
Q ss_pred CCCCCcccHHHHHHH
Q 031051 145 GDENDGVSFDGLLKI 159 (166)
Q Consensus 145 ~~~~g~i~~~eF~~~ 159 (166)
.|..|+.++.-..
T Consensus 114 --dD~~ItVedLWea 126 (575)
T KOG4403|consen 114 --DDKHITVEDLWEA 126 (575)
T ss_pred --CccceeHHHHHHH
Confidence 3446777775443
No 234
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=34.44 E-value=75 Score=23.85 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=48.3
Q ss_pred cCCCCCCHHHHHHHHHhh--cCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHH-----HhhCCCCCCcccHH
Q 031051 46 RRASEEDGDVIGTMISVA--DFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVF-----KVMDKDGDGRLSHG 118 (166)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F-----~~~D~~~~g~I~~~ 118 (166)
+...+ ..++++.|++.+ |.|+...+-=++|...+..+ ....+.+| +.+-..-+|.+=..
T Consensus 34 ~dis~-~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l-------------~~e~r~~FidFLerScTaEFSGflLYK 99 (351)
T CHL00185 34 YDISS-NIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNL-------------DEKTKSLFVEFLERSCTAEFSGFLLYK 99 (351)
T ss_pred cCCch-hHHHHHHHHHHHHhCccccccccChhhhhchhhC-------------CHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 44455 667777777654 44455556666676655444 23333333 44456667777666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhcCCCC
Q 031051 119 DLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148 (166)
Q Consensus 119 e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~ 148 (166)
|+.+-++. ...++.++|..+.+|..
T Consensus 100 El~rrlk~-----~nP~lae~F~lMaRDEA 124 (351)
T CHL00185 100 ELSRKLKD-----KNPLLAEGFLLMSRDEA 124 (351)
T ss_pred HHHHHhcc-----CCcHHHHHHHHHhhhhH
Confidence 66554432 22577788887777653
No 235
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=34.42 E-value=1e+02 Score=18.33 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=31.5
Q ss_pred CcccHHHHHHHHHHcCCCCCHHH-HH---HHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDD-IK---AMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~-~~---~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
...+.+++..++..++.. ..+ +. ..++..+......++.++.+++|..+|
T Consensus 34 ~~~~~~~l~~~~~~~~~~--~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p 87 (105)
T cd02977 34 EPPTKEELKELLAKLGLG--VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHP 87 (105)
T ss_pred CCCCHHHHHHHHHhcCCC--HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCc
Confidence 467788888888887622 111 11 233344333235689999999998877
No 236
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.12 E-value=63 Score=22.07 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=33.4
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMI 140 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~ 140 (166)
+..+.+|..||+.+=-..+.+++.+++...|+--...-+..++
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 7789999999999888899999999999877544444444433
No 237
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=34.10 E-value=82 Score=17.05 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHH
Q 031051 115 LSHGDLKSYMNCAGFAATDDDIKAM 139 (166)
Q Consensus 115 I~~~e~~~~l~~~~~~~s~~~~~~~ 139 (166)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3478899999999999999988764
No 238
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=33.58 E-value=44 Score=17.80 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=16.9
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 139 MIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 139 ~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
+++.+-..++|..+|+.+-.+-.+|.
T Consensus 19 ~yhLYrsek~G~rdYEKY~~LAL~D~ 44 (56)
T TIGR02736 19 IYHLYRSQKKGERDYEKYANLALNDD 44 (56)
T ss_pred HHHhhhhhcccccCHHHHhhhhcccc
Confidence 34555566677788887777665553
No 239
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=33.50 E-value=1.3e+02 Score=21.30 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=34.0
Q ss_pred cHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 116 SHGDLKSYMNC----AGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 116 ~~~e~~~~l~~----~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
+.++++.++.. .+.+++++++..+...+..-.+-.+++.+|..-+
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql 221 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQL 221 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77788777665 5888999998888887766556667888877654
No 240
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=33.08 E-value=60 Score=15.19 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=10.9
Q ss_pred cccHHHHHHHHHHcCCCC
Q 031051 114 RLSHGDLKSYMNCAGFAA 131 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~ 131 (166)
.++..|+++.+...|...
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 356667777777766443
No 241
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.94 E-value=89 Score=17.97 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=14.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHH
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIK 137 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~ 137 (166)
.|.....+++++.+| +|+.+++
T Consensus 8 ~VP~~~wk~F~R~LG--Lsdn~Ie 29 (77)
T cd08815 8 AVPARRWKEFVRTLG--LREAEIE 29 (77)
T ss_pred cCChHHHHHHHHHcC--CcHhHHH
Confidence 567777888888877 5554443
No 242
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.72 E-value=1.2e+02 Score=23.25 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=26.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHh-hcCCCCCcccHHHHHHHHHh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRL-GGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~-~d~~~~g~i~~~eF~~~~~~ 162 (166)
..++.+||+..|.. +.. +.+.|..-+.. -+.=-.-++.|.||++.|..
T Consensus 6 ~~~~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~ 54 (379)
T PF11593_consen 6 PNLKLEELEEKLAS-NDN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMAN 54 (379)
T ss_pred CCCcHHHHHHHHhc-CCc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45677777777763 333 44444444433 22222446777777777653
No 243
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=32.26 E-value=1.3e+02 Score=19.76 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=12.9
Q ss_pred CCcccHHHHHHHHHhcCCCC
Q 031051 31 DGKISRDDLRAFYAGRRASE 50 (166)
Q Consensus 31 ~g~i~~~e~~~~l~~~~~~~ 50 (166)
.|+|+.+.+..+-..++..+
T Consensus 36 ~G~Ip~e~~~~iA~~l~v~~ 55 (156)
T PRK05988 36 FGYVPEDAVPVIAEALNLSR 55 (156)
T ss_pred cCCCCHHHHHHHHHHhCCCH
Confidence 46777777777766665533
No 244
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.23 E-value=1.1e+02 Score=19.15 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 115 LSHGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 115 I~~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
-+.+|++.++..-+..++.+++++++...
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 46789999999888888999888887654
No 245
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=31.41 E-value=47 Score=15.61 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=13.6
Q ss_pred HHHcCCCCCHHHHHHHHHhhcCC
Q 031051 124 MNCAGFAATDDDIKAMIRLGGGD 146 (166)
Q Consensus 124 l~~~~~~~s~~~~~~~~~~~d~~ 146 (166)
+..+| ++.+++...+...+.|
T Consensus 9 L~~mG--f~~~~~~~AL~~~~~n 29 (37)
T PF00627_consen 9 LMEMG--FSREQAREALRACNGN 29 (37)
T ss_dssp HHHHT--S-HHHHHHHHHHTTTS
T ss_pred HHHcC--CCHHHHHHHHHHcCCC
Confidence 34446 7777888888877654
No 246
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.34 E-value=1.4e+02 Score=19.05 Aligned_cols=33 Identities=3% Similarity=-0.017 Sum_probs=22.7
Q ss_pred cccHHHHHHHHH-hcCCCCCCHHHHHHHHHhhcC
Q 031051 33 KISRDDLRAFYA-GRRASEEDGDVIGTMISVADF 65 (166)
Q Consensus 33 ~i~~~e~~~~l~-~~~~~~~~~~~~~~~~~~~d~ 65 (166)
.+...+|..|+. .+++...+......++..|..
T Consensus 38 ~l~HGef~~Wle~~~~~s~rtA~~~M~va~~yg~ 71 (130)
T PF11300_consen 38 LLPHGEFGKWLEEEVGYSQRTAQRFMQVAEEYGS 71 (130)
T ss_pred hCCHHHHHHHHHHHcCcCHHHHHHHHHHHHHhCc
Confidence 477789999998 676655455555566666643
No 247
>PF06952 PsiA: PsiA protein; InterPro: IPR009713 This family consists of several Enterobacterial PsiA proteins. The function of PsiA is unknown although it is thought that it may affect the generation of an SOS signal in Escherichia coli [].
Probab=31.12 E-value=2e+02 Score=20.54 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHhCCC--CCCcccHHHHHHHHHhcCCCCC-CHHHHHHHHHhhcCCCCCcccHHHHH
Q 031051 1 MCPTGTALRPRDAAKPSRLKPAFDVIDAD--RDGKISRDDLRAFYAGRRASEE-DGDVIGTMISVADFNKDGYVEYDEFE 77 (166)
Q Consensus 1 ~~p~~~~~~~~~~~~~~~l~~~f~~~D~~--~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~ 77 (166)
|-|.+..+-+..+.+.+.++.+-..=... |...-+..-...+++.++.... +...+..+-..+....++.=+..++.
T Consensus 1 Mip~s~aLVp~~p~rqAa~~Aia~VE~~r~~G~~l~~~Pya~aFfR~L~G~~rI~~~dlr~i~~~~~~~~~~~~~l~~~~ 80 (238)
T PF06952_consen 1 MIPRSHALVPLNPERQAAMQAIAEVEERRQRGRRLAAMPYARAFFRVLNGSGRISSKDLRQIPPLYWPPERRGATLKQYL 80 (238)
T ss_pred CCCcccccCcCCHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHhcCCCccchhhhhhcCcccChhhcCCCcHHHHH
Confidence 78999999998888777666655443322 2222233344555555543322 55666666666655555555666666
Q ss_pred HHHHHHhc
Q 031051 78 RVLDLEYG 85 (166)
Q Consensus 78 ~~~~~~~~ 85 (166)
..+..++.
T Consensus 81 ~AlD~LIe 88 (238)
T PF06952_consen 81 RALDRLIE 88 (238)
T ss_pred HHHHHHHH
Confidence 66666543
No 248
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=31.08 E-value=94 Score=17.55 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=13.3
Q ss_pred CCCcccHHHHHHHHHH
Q 031051 111 GDGRLSHGDLKSYMNC 126 (166)
Q Consensus 111 ~~g~I~~~e~~~~l~~ 126 (166)
..|.++.+||.+++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 5688999999998865
No 249
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=31.04 E-value=1.2e+02 Score=18.18 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=14.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
.|+..+++++.+.+| +|+.+++.+-..
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~ 43 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLD 43 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHc
Confidence 345556666666665 555555544443
No 250
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=30.88 E-value=87 Score=23.59 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=49.5
Q ss_pred hcCCCCCCHHHHHHHHHhh--cCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHH-----HhhCCCCCCcccH
Q 031051 45 GRRASEEDGDVIGTMISVA--DFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVF-----KVMDKDGDGRLSH 117 (166)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F-----~~~D~~~~g~I~~ 117 (166)
.+..++ ..++++.|+..+ |.|+...+-=++|...+..+ ....+.+| +.+-..-+|.+=.
T Consensus 37 ~~d~s~-~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l-------------~~e~r~~FidFLerSctaEFSGflLY 102 (355)
T PRK13654 37 KLDLSP-NREELDAILEEMRADYNRHHFVRDEEFDQDWDHL-------------DPETRKEFIDFLERSCTAEFSGFLLY 102 (355)
T ss_pred hcCCch-hHHHHHHHHHHHHhCcccccccCChhhhhchhhC-------------CHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 345555 677777777654 44455556666676655444 23334444 4445666777766
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhcCCCC
Q 031051 118 GDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148 (166)
Q Consensus 118 ~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~ 148 (166)
.|+.+-++.- ..++.++|..+.+|..
T Consensus 103 KEl~rrlk~~-----nP~lae~F~lMaRDEA 128 (355)
T PRK13654 103 KELSRRLKDR-----NPLLAELFQLMARDEA 128 (355)
T ss_pred HHHHHhcccc-----CcHHHHHHHHHhhhHH
Confidence 6665443321 3577888888777753
No 251
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=30.88 E-value=80 Score=18.75 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=8.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh
Q 031051 120 LKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 120 ~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
++++++.-|..++.+++..++..
T Consensus 14 Lk~lLk~rGi~v~~~~L~~f~~~ 36 (90)
T PF02337_consen 14 LKHLLKERGIRVKKKDLINFLSF 36 (90)
T ss_dssp HHHHHHCCT----HHHHHHHHHH
T ss_pred HHHHHHHcCeeecHHHHHHHHHH
Confidence 33344444444444444444443
No 252
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=30.26 E-value=1.1e+02 Score=22.67 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=45.1
Q ss_pred hcCCCCCCHHHHHHHHHhh--cCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHH-----HhhCCCCCCcccH
Q 031051 45 GRRASEEDGDVIGTMISVA--DFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVF-----KVMDKDGDGRLSH 117 (166)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F-----~~~D~~~~g~I~~ 117 (166)
.+..++ ..++++.|++.+ |.|+...+-=++|...+... ...++.+| +.+-..-+|.+=.
T Consensus 17 ~~dis~-~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~-------------~~e~r~~FidFLerSctaEFSGflLY 82 (323)
T cd01047 17 ALDISK-NREEFEAMLAEFKADYNRHHFVRNDEFDQAADKI-------------DPELRQIFLEFLERSCTSEFSGFLLY 82 (323)
T ss_pred hcCCch-hHHHHHHHHHHHHhCcccccccCCchhhhhhhhC-------------CHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 344455 666666666654 34444555556665554433 22333333 3445566777765
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhcCCC
Q 031051 118 GDLKSYMNCAGFAATDDDIKAMIRLGGGDE 147 (166)
Q Consensus 118 ~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~ 147 (166)
.|+.+-++. ...++.++|..+.+|.
T Consensus 83 KEl~rrlk~-----~nP~lae~F~lMaRDE 107 (323)
T cd01047 83 KELGRRLKN-----TNPVVAELFRLMARDE 107 (323)
T ss_pred HHHHHHccc-----CCcHHHHHHHHHhhhH
Confidence 555444332 1256777777777765
No 253
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=29.84 E-value=45 Score=15.88 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=10.7
Q ss_pred cccHHHHHHHHHHcCCCC
Q 031051 114 RLSHGDLKSYMNCAGFAA 131 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~ 131 (166)
.++..+++.++...|+.+
T Consensus 3 sltV~~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEF 20 (35)
T ss_dssp T--SHHHHHHHHHHT---
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467788999998877654
No 254
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=29.68 E-value=82 Score=15.67 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=8.5
Q ss_pred CcccHHHHHHHHHHc
Q 031051 113 GRLSHGDLKSYMNCA 127 (166)
Q Consensus 113 g~I~~~e~~~~l~~~ 127 (166)
+.++..++.+.+..+
T Consensus 17 ~~~~~~~v~~~v~~L 31 (47)
T PF02671_consen 17 GRISRSEVIEEVSEL 31 (47)
T ss_dssp TCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 456666665555553
No 255
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=29.33 E-value=1e+02 Score=18.14 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=16.7
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMI 140 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~ 140 (166)
|+.+...|-..+..+| +|.+++.+++
T Consensus 61 Gy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 61 GYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred CCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 6677666666666665 6666666554
No 256
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=29.33 E-value=30 Score=20.01 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=7.2
Q ss_pred cccHHHHHHHHHHcC
Q 031051 114 RLSHGDLKSYMNCAG 128 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~ 128 (166)
.++.+|.+.++...+
T Consensus 17 iLs~eE~~~lL~~y~ 31 (79)
T PRK09570 17 ILSEEEAKKLLKEYG 31 (79)
T ss_pred ECCHHHHHHHHHHcC
Confidence 344455555555443
No 257
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=29.29 E-value=1.7e+02 Score=24.67 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=42.7
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKIL 160 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 160 (166)
...+.+|+...+.+.-++..+++..+ +.+++.+..+..++...++.|++..|....
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~i 459 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWI 459 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHH
Confidence 34677899888888778877666443 667888888888888666679999987654
No 258
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.87 E-value=1.4e+02 Score=18.19 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=21.9
Q ss_pred CCcccHH----HHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 112 DGRLSHG----DLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 112 ~g~I~~~----e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
+|.-=.+ .+...+...|+++++++++.+++..
T Consensus 65 ~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 65 KGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5544444 3445566678999999999888763
No 259
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=28.25 E-value=93 Score=19.17 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=29.2
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
..++.+|++.++..+|...--.--...++...... ..++.++.++.|..+|
T Consensus 35 ~p~s~~eL~~~l~~~g~~~l~n~~~~~~r~~~~~~-~~ls~~e~~~ll~~~P 85 (113)
T cd03033 35 EPWTAETLRPFFGDLPVAEWFNPAAPRVKSGEVVP-EALDEEEALALMIADP 85 (113)
T ss_pred CCCCHHHHHHHHHHcCHHHHHhcccHHHHhcCCCc-cCCCHHHHHHHHHhCc
Confidence 35888888888887762100000022333333222 3578888888888776
No 260
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=28.11 E-value=1.5e+02 Score=18.27 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=34.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
-|+.+.++.++...|....+.-+..++..+.. ++.+|-+.-..
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-----~~idE~i~~~~ 58 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG-----VDIDEVIKNAA 58 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-----CCHHHHHHHhc
Confidence 89999999999999999999889999888752 46666665443
No 261
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.00 E-value=1.7e+02 Score=18.80 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=29.3
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGG 144 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d 144 (166)
+.++-+|..-+ .++..++...++++|..|+..+|+.-+
T Consensus 91 kKLRiAf~lK~---------~Dm~~I~~~~~f~vS~pElsAlfR~~~ 128 (155)
T COG4807 91 KKLRIAFSLKT---------DDMLAILTEQQFRVSMPELSALFRAPD 128 (155)
T ss_pred HhHhHhhhccc---------chHHHHHhccCcccccHHHHHHHhCCC
Confidence 44666676554 357888888899999999999998854
No 262
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=27.97 E-value=76 Score=14.72 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=10.7
Q ss_pred cccHHHHHHHHHHcCCC
Q 031051 114 RLSHGDLKSYMNCAGFA 130 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~ 130 (166)
.++..+++..++..|..
T Consensus 3 ~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 3 KLKVSELKDELKKRGLS 19 (35)
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 45666777777766544
No 263
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=27.75 E-value=1.6e+02 Score=19.98 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=28.1
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcC
Q 031051 28 ADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADF 65 (166)
Q Consensus 28 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~ 65 (166)
-+.+|+++.+++...++.-+... +.+.+..+...-++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~-t~~~l~~vV~~d~K 64 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWV-TRELLEAVVESDDK 64 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCC-CHHHHHHHHHcCCC
Confidence 47789999999999887543334 88888888876543
No 264
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=27.66 E-value=15 Score=16.84 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=7.4
Q ss_pred HHHHhhcCCCCCccc
Q 031051 138 AMIRLGGGDENDGVS 152 (166)
Q Consensus 138 ~~~~~~d~~~~g~i~ 152 (166)
.++++-|.|++-+|+
T Consensus 3 ~LL~qEDTDgn~qIT 17 (30)
T PF07492_consen 3 SLLEQEDTDGNFQIT 17 (30)
T ss_pred hHhhccccCCCcEEE
Confidence 344455555555544
No 265
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=27.31 E-value=1.6e+02 Score=18.30 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=39.5
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031051 22 AFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVEYDEFERVL 80 (166)
Q Consensus 22 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 80 (166)
.|...-..++..++.+++..+|...|... ...++..+++.+. ..+..+.+.-=
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveV-d~~~~~l~~~~L~-----GKdI~ELIa~G 60 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADV-EDDVLDNFFKSLE-----GKTPHELIAAG 60 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCc-cHHHHHHHHHHHc-----CCCHHHHHHHh
Confidence 34445556677899999999999999888 8888888887772 25677776643
No 266
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=27.28 E-value=78 Score=23.62 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHhh--cCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHH-----HhhCCCCCCcccHH
Q 031051 46 RRASEEDGDVIGTMISVA--DFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVF-----KVMDKDGDGRLSHG 118 (166)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F-----~~~D~~~~g~I~~~ 118 (166)
+...+ ..++++.|++.+ |.|+...+-=++|...+..+ ....+.+| +.+-..-+|.+=..
T Consensus 28 ~d~s~-~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l-------------~~e~r~~FidFLerScTaEFSGflLYK 93 (337)
T TIGR02029 28 LDVSP-VENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHI-------------DGELRQAFIEFLERSCTSEFSGFLLYK 93 (337)
T ss_pred cCCch-hHHHHHHHHHHHHhCccccccccChhhhcchhhC-------------CHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 44445 666666666654 33444445555665544433 22333333 34455667777555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhcCCC
Q 031051 119 DLKSYMNCAGFAATDDDIKAMIRLGGGDE 147 (166)
Q Consensus 119 e~~~~l~~~~~~~s~~~~~~~~~~~d~~~ 147 (166)
|+.+-++. .+..+.++|..+.+|.
T Consensus 94 El~rrlk~-----~~P~lae~F~~MaRDE 117 (337)
T TIGR02029 94 ELSRRLKN-----RDPVVAELFQLMARDE 117 (337)
T ss_pred HHHHhcCC-----CChHHHHHHHHHhhhh
Confidence 55443322 3345777777777665
No 267
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=26.85 E-value=1e+02 Score=15.81 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=28.3
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
..|...|.. +.+++.++...+...+| ++...|...|..
T Consensus 13 ~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 13 KVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred HHHHHHHHH-----hcccccccccccccccc--ccccccccCHHH
Confidence 345555553 46888899888888887 888888888764
No 268
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=26.61 E-value=1.7e+02 Score=18.32 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=21.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 112 DGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 112 ~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
.|.++.+++..-+..-+-.++..++..++..
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~ 56 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNA 56 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5677777776666554566777777766654
No 269
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=26.42 E-value=29 Score=27.47 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=15.3
Q ss_pred CCCcccHHHHHHHHHHH
Q 031051 67 KDGYVEYDEFERVLDLE 83 (166)
Q Consensus 67 ~~g~i~~~ef~~~~~~~ 83 (166)
|.|+|+|.+...++.++
T Consensus 414 GaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAI 430 (520)
T ss_pred CcceeeecccHHHHHHH
Confidence 68999999999999877
No 270
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=26.41 E-value=95 Score=17.70 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhcCCCC
Q 031051 119 DLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148 (166)
Q Consensus 119 e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~ 148 (166)
.+..++..+|..-+++.|+.++..+....+
T Consensus 7 ~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~ 36 (74)
T PF10982_consen 7 TLSNLFAQLGLDSSDEAIEAFIETHQLPAD 36 (74)
T ss_dssp HHHHHHHHHTS---HHHHHHHHHHS---TT
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHhCCCCCC
Confidence 566778888888888888888887664443
No 271
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.97 E-value=65 Score=14.75 Aligned_cols=13 Identities=15% Similarity=0.549 Sum_probs=7.7
Q ss_pred cccHHHHHHHHHH
Q 031051 114 RLSHGDLKSYMNC 126 (166)
Q Consensus 114 ~I~~~e~~~~l~~ 126 (166)
.||.+|+++++..
T Consensus 16 Gls~eeir~FL~~ 28 (30)
T PF08671_consen 16 GLSKEEIREFLEF 28 (30)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 4778888877753
No 272
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=25.97 E-value=1.1e+02 Score=18.70 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=30.0
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHH----HHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDI----KAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~----~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
...+.+++..++..+|..+ .++ ...++....+. ..++-++.+++|..+|
T Consensus 35 ~~~~~~el~~~~~~~~~~~--~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p 87 (115)
T cd03032 35 QPLTKEELKEILSLTENGV--EDIISTRSKAFKNLNIDI-DELSLSELIRLISEHP 87 (115)
T ss_pred CcchHHHHHHHHHHhcCCH--HHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhCh
Confidence 4678888888888875321 111 12333333332 3578888999888876
No 273
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=25.82 E-value=77 Score=21.67 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=32.9
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIR 141 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~ 141 (166)
..++.+|..||+..=-..+.+++.+++..-++--...-|+.++.
T Consensus 54 e~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 54 ENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 77899999999988777889999999887664334444555444
No 274
>PTZ00056 glutathione peroxidase; Provisional
Probab=25.59 E-value=1.1e+02 Score=20.87 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=24.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCC
Q 031051 112 DGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDEN 148 (166)
Q Consensus 112 ~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~ 148 (166)
.|.++.+++...+..+ +.+.+.+++|+.+|.-+.
T Consensus 162 ~g~~~~~~l~~~I~~l---l~~~~~~~~~~~~~~~~~ 195 (199)
T PTZ00056 162 SPRTEPLELEKKIAEL---LGVKDYQELFKNYDKLHP 195 (199)
T ss_pred CCCCCHHHHHHHHHHH---HHHHHHHHHHHhhhhcCc
Confidence 4566777777777776 666778888888876544
No 275
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.59 E-value=60 Score=29.95 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=45.3
Q ss_pred ccCCcccHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031051 92 KSNGGGGLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAA----TDDDIKAMIRLGGGDENDGVSFDGLLKILAV 162 (166)
Q Consensus 92 ~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~----s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 162 (166)
-.+...+....++..+|++.+|.|...++..++..+..++ .... +.+-..+-...++.|++.+=+-++..
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 3445567788999999999999999999999999863322 1111 11111233335556777666655544
No 276
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=25.40 E-value=1e+02 Score=19.46 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=27.5
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
..++.++++.++..+|..---.--...++..+.+. ..++.++.+++|..+|
T Consensus 36 ~p~t~~eL~~~l~~~g~~~lin~~~~~~r~l~~~~-~~ls~~e~i~lm~~~P 86 (126)
T TIGR01616 36 EPWHADTLRPYFGNKPVGSWFNRAAPRVKSGEVNP-DSIDEASALALMVSDP 86 (126)
T ss_pred CCcCHHHHHHHHHHcCHHHHHhccchHhhhCCCCc-ccCCHHHHHHHHHhCc
Confidence 35778888888877641000000011333333222 3577788888887766
No 277
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=25.28 E-value=2.5e+02 Score=19.89 Aligned_cols=89 Identities=12% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCCcccHHHHHHHHHhcCCCC-----C----CHHHHHHHHHhhcC-----CCCCcccHHHHHHHHHHHhccccCCCccCC
Q 031051 30 RDGKISRDDLRAFYAGRRASE-----E----DGDVIGTMISVADF-----NKDGYVEYDEFERVLDLEYGKANSKSKSNG 95 (166)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~~~-----~----~~~~~~~~~~~~d~-----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 95 (166)
.++.++.+.-..+++.+|..- + ..+|+..+...+-. -..|.|+.+.|..++...+ ...
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~l--------daG 202 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIAL--------DAG 202 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHH--------HcC
Confidence 456788888888888776642 1 56666666554322 3467788888888887662 222
Q ss_pred cccHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031051 96 GGGLMEDVFKVMDKDGDGRLSHGDLKSYMNC 126 (166)
Q Consensus 96 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~ 126 (166)
..+.+-++|..+=...+|.=..+++++++..
T Consensus 203 v~kviPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 203 VEKVIPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred CCeeccccceeccccccCCCCHHHHHHHHHH
Confidence 3344455664443345566666667666654
No 278
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.94 E-value=1.1e+02 Score=20.81 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=33.7
Q ss_pred cHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 031051 98 GLMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIR 141 (166)
Q Consensus 98 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~ 141 (166)
..++.+|..||+..=-..+.+++.+++..-++--...-+..++.
T Consensus 53 ~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 53 ENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 77899999999988788889999999887665444445555554
No 279
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=24.91 E-value=1.1e+02 Score=15.76 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=23.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCC
Q 031051 30 RDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNK 67 (166)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 67 (166)
..|.|+..+|+..+. . +...+-.+...+|..+
T Consensus 7 ~~~~itv~~~rd~lg-----~-sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG-----L-SRKYAIPLLEYLDREG 38 (50)
T ss_dssp TTSSBEHHHHHHHHT-----S--HHHHHHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHHC-----c-cHHHHHHHHHHHhccC
Confidence 378899999999983 3 7777777777777543
No 280
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=24.90 E-value=1.4e+02 Score=16.69 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031051 99 LMEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGG 144 (166)
Q Consensus 99 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d 144 (166)
.+..+|-.|=....+.|....+..++..+| +++.-+...+..+-
T Consensus 5 li~tl~Gdy~~~~g~~i~~~~Li~ll~~~G--v~e~avR~alsRl~ 48 (70)
T PF07848_consen 5 LIVTLLGDYLRPRGGWIWVASLIRLLAAFG--VSESAVRTALSRLV 48 (70)
T ss_dssp HHHHHHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHHH
T ss_pred ehHHHHHHHhccCCCceeHHHHHHHHHHcC--CChHHHHHHHHHHH
Confidence 345566556667779999999999999998 77777887777654
No 281
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=24.48 E-value=1.3e+02 Score=16.15 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=17.2
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRLG 143 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~ 143 (166)
+.+...++-.+....+ ++-+++...|..-
T Consensus 21 ~~L~E~DL~~L~~kS~--ms~qqVr~WFa~~ 49 (56)
T PF11569_consen 21 KQLQEEDLDELCDKSR--MSYQQVRDWFAER 49 (56)
T ss_dssp ----TTHHHHHHHHTT----HHHHHHHHHHH
T ss_pred CCccHhhHHHHHHHHC--CCHHHHHHHHHHh
Confidence 5666677777777776 7778888887653
No 282
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=24.19 E-value=2e+02 Score=18.27 Aligned_cols=49 Identities=8% Similarity=0.180 Sum_probs=29.7
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHH----HHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDI----KAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~----~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
..++.+++..++..+|..+ +++ ...++..+.+. ..++-++.+.+|..+|
T Consensus 35 ~~~s~~eL~~~l~~~~~~~--~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P 87 (132)
T PRK13344 35 EPLTKEEILAILTKTENGI--ESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENP 87 (132)
T ss_pred CCCCHHHHHHHHHHhCCCH--HHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCc
Confidence 3688888998888876321 111 12333333322 3577888888887766
No 283
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.96 E-value=1.5e+02 Score=16.83 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=11.2
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHH
Q 031051 115 LSHGDLKSYMNCAGFAATDDDIKA 138 (166)
Q Consensus 115 I~~~e~~~~l~~~~~~~s~~~~~~ 138 (166)
++..+.+.+.+.+| +++.+++.
T Consensus 9 v~~~~Wk~laR~LG--ls~~~I~~ 30 (79)
T cd08784 9 VPFDQHKRFFRKLG--LSDNEIKV 30 (79)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHH
Confidence 44555556555555 44444433
No 284
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=23.66 E-value=91 Score=14.16 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=10.5
Q ss_pred CCcccHHHHHHHHHH
Q 031051 112 DGRLSHGDLKSYMNC 126 (166)
Q Consensus 112 ~g~I~~~e~~~~l~~ 126 (166)
.|.||.+|+.+.-..
T Consensus 14 ~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 14 KGEISEEEYEQKKAR 28 (31)
T ss_pred cCCCCHHHHHHHHHH
Confidence 478888888766443
No 285
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=23.57 E-value=3.1e+02 Score=20.93 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh--hcCCCCCcccHHHHHHHHHhh
Q 031051 120 LKSYMNCAGFAATDDDIKAMIRL--GGGDENDGVSFDGLLKILAVD 163 (166)
Q Consensus 120 ~~~~l~~~~~~~s~~~~~~~~~~--~d~~~~g~i~~~eF~~~~~~~ 163 (166)
|.+.+..+-..++.+++...++. +|.--+-.||++.|...+..+
T Consensus 116 L~~~l~~~~p~l~~~~i~~~~~~sVldt~~SPTiNlN~lf~~~~~d 161 (381)
T PF09506_consen 116 LKEFLPAILPELSQEEIEKLIEASVLDTRVSPTINLNSLFDLVPDD 161 (381)
T ss_pred HHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCccchHHHHHHhccc
Confidence 44455555566778888887776 555556678888888776554
No 286
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=23.52 E-value=2.1e+02 Score=18.54 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCC-----CcccHHHHHHHHHHH
Q 031051 34 ISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKD-----GYVEYDEFERVLDLE 83 (166)
Q Consensus 34 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~-----g~i~~~ef~~~~~~~ 83 (166)
.+.+++..+...+..++ +.+++..++..++.-+. ..|+..-...++...
T Consensus 27 WT~eDV~~~a~gme~~l-Td~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~~ 80 (139)
T PF07128_consen 27 WTREDVRALADGMEYNL-TDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIREV 80 (139)
T ss_pred ecHHHHHHHHhcCCCCC-CHHHHHHHHHHHhcCccccchhccccHHHHHHHHHHH
Confidence 57888999888888888 99999999988866422 346666555555444
No 287
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.82 E-value=1.1e+02 Score=14.60 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=12.9
Q ss_pred CHHHHHHHHHhhcCCCCCcc-cHHHHHHHH
Q 031051 132 TDDDIKAMIRLGGGDENDGV-SFDGLLKIL 160 (166)
Q Consensus 132 s~~~~~~~~~~~d~~~~g~i-~~~eF~~~~ 160 (166)
+.+++...+..+....+... +.++.+..+
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~ 34 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKLA 34 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence 34444444444444333333 555555444
No 288
>PRK10026 arsenate reductase; Provisional
Probab=22.56 E-value=2.3e+02 Score=18.39 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=31.9
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHH-H---HHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDI-K---AMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~-~---~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
..+|.+|+++++..+|.. ..++ . ..++.+..+.+ .++.++.+.+|..+|
T Consensus 37 ~ppt~~eL~~~l~~~g~~--~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P 89 (141)
T PRK10026 37 TPPTRDELVKLIADMGIS--VRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHP 89 (141)
T ss_pred CCcCHHHHHHHHHhCCCC--HHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCc
Confidence 468889999999988732 1111 1 24444444333 478899999998876
No 289
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=22.50 E-value=1.4e+02 Score=15.94 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=35.8
Q ss_pred CCCchhhHHHHHHHhCCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCCCccc
Q 031051 12 DAAKPSRLKPAFDVIDADRDGKISRDDLRAFYAGRRASEEDGDVIGTMISVADFNKDGYVE 72 (166)
Q Consensus 12 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 72 (166)
++.....|+.+|.... +.+.++..++...|. . +.+.+..++.++... |.|.
T Consensus 3 t~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----v-s~~tvt~ml~~L~~~--GlV~ 53 (60)
T PF01325_consen 3 TESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----V-SPPTVTEMLKRLAEK--GLVE 53 (60)
T ss_dssp SCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S--HHHHHHHHHHHHHT--TSEE
T ss_pred CcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----C-ChHHHHHHHHHHHHC--CCEE
Confidence 3445567788888875 678899999999983 3 778888888776433 4444
No 290
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=22.35 E-value=96 Score=21.77 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=21.4
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHH-cCCCCCHH
Q 031051 103 VFKVMDKDGDGRLSHGDLKSYMNC-AGFAATDD 134 (166)
Q Consensus 103 ~F~~~D~~~~g~I~~~e~~~~l~~-~~~~~s~~ 134 (166)
.|..+|.++ ..|+.+++..++.. ....++.+
T Consensus 148 ~f~l~D~~~-~~i~~~~~~~~~~~~~~~~i~~e 179 (221)
T PF08812_consen 148 SFILYDEEG-KPISNEELEEYIDELFDQEINYE 179 (221)
T ss_pred cEEEEcCCC-CCCCHHHHHHHHHHhhcCCCcHH
Confidence 678888776 37888888888887 33344443
No 291
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=22.25 E-value=98 Score=17.69 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=15.0
Q ss_pred hcCCCCCcccHHHHHHHHH
Q 031051 143 GGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 143 ~d~~~~g~i~~~eF~~~~~ 161 (166)
...|..|.|+++.|+....
T Consensus 11 ~~~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWS 29 (76)
T ss_pred eEEcCCCcCcHHHHHHHHH
Confidence 4567889999999997654
No 292
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=22.23 E-value=77 Score=19.92 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=15.4
Q ss_pred CCCCCcccHHHHHHHHHHc
Q 031051 109 KDGDGRLSHGDLKSYMNCA 127 (166)
Q Consensus 109 ~~~~g~I~~~e~~~~l~~~ 127 (166)
.|.+|.|+.+++++++.++
T Consensus 5 iDtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 5 IDTSGSISDEELRRFLSEV 23 (126)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3578999999999988764
No 293
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=22.03 E-value=2e+02 Score=17.51 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=30.5
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 031051 113 GRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLK 158 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~ 158 (166)
-.||.+++..++...|.+....-+..+++.+.. .+.++++.
T Consensus 16 ~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g-----k~i~elIa 56 (103)
T cd05831 16 IEITADNINALLKAAGVNVEPYWPGLFAKALEG-----KDIKDLLS 56 (103)
T ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHhh
Confidence 469999999999999988888777777666632 35555553
No 294
>PHA02771 hypothetical protein; Provisional
Probab=21.86 E-value=1.9e+02 Score=17.19 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHhhc
Q 031051 131 ATDDDIKAMIRLGG 144 (166)
Q Consensus 131 ~s~~~~~~~~~~~d 144 (166)
++.++..++.+..+
T Consensus 32 ite~ey~ELi~n~~ 45 (90)
T PHA02771 32 VSYNQFEEIIKDGD 45 (90)
T ss_pred ecHHHHHHHHcCCc
Confidence 45566666665543
No 295
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=21.72 E-value=1.3e+02 Score=16.59 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=26.8
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhcC
Q 031051 104 FKVMDKDGDGRLSHGDLKSYMNCAG-FAATDDDIKAMIRLGGG 145 (166)
Q Consensus 104 F~~~D~~~~g~I~~~e~~~~l~~~~-~~~s~~~~~~~~~~~d~ 145 (166)
|+.+.....|.++..+...+-.-+. ..++++-+..+++.+-.
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~ 44 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALE 44 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5556566667888887777766543 35777778888877653
No 296
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=21.53 E-value=1.3e+02 Score=18.15 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=29.1
Q ss_pred CcccHHHHHHHHHHcCCCCCH--HHHHHHHHhhcCCCCCcccHHHHHHHHHhhh
Q 031051 113 GRLSHGDLKSYMNCAGFAATD--DDIKAMIRLGGGDENDGVSFDGLLKILAVDT 164 (166)
Q Consensus 113 g~I~~~e~~~~l~~~~~~~s~--~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 164 (166)
-.++.+++..++..+|..+.. .-=...++.++......++-++.+.+|..+|
T Consensus 31 ~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p 84 (110)
T PF03960_consen 31 EPLSREELRELLSKLGNGPDDLINTRSKTYKELGKLKKDDLSDEELIELLLENP 84 (110)
T ss_dssp S---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSG
T ss_pred CCCCHHHHHHHHHHhcccHHHHhcCccchHhhhhhhhhhhhhhHHHHHHHHhCh
Confidence 358899999999988732110 0001233443311224688899999998877
No 297
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=21.40 E-value=2.1e+02 Score=21.64 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=43.8
Q ss_pred CHHHHHHHHHhh--cCCCCCcccHHHHHHHHHHHhccccCCCccCCcccHHHHHH-----HhhCCCCCCcccHHHHHHHH
Q 031051 52 DGDVIGTMISVA--DFNKDGYVEYDEFERVLDLEYGKANSKSKSNGGGGLMEDVF-----KVMDKDGDGRLSHGDLKSYM 124 (166)
Q Consensus 52 ~~~~~~~~~~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F-----~~~D~~~~g~I~~~e~~~~l 124 (166)
..+++..|++.+ |.|+...+-=++|...+..+ ....+.+| +.+-..-+|.+=..|+.+-+
T Consensus 39 ~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l-------------~~~~r~~FidFLerSctaEFSGflLYKEl~rrl 105 (357)
T PLN02508 39 DMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKI-------------QGPLRQIFIEFLERSCTAEFSGFLLYKELGRRL 105 (357)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhccchhhC-------------CHHHHHHHHHHHHhhhhhhcccchHHHHHHHhc
Confidence 555666666544 33444455555665544433 23333333 34456677888666654443
Q ss_pred HHcCCCCCHHHHHHHHHhhcCCCC
Q 031051 125 NCAGFAATDDDIKAMIRLGGGDEN 148 (166)
Q Consensus 125 ~~~~~~~s~~~~~~~~~~~d~~~~ 148 (166)
+. ...++.++|..+.+|..
T Consensus 106 k~-----~nP~lae~F~lMaRDEA 124 (357)
T PLN02508 106 KK-----TNPVVAEIFTLMSRDEA 124 (357)
T ss_pred cc-----CChHHHHHHHHhCchhH
Confidence 22 23578888888877753
No 298
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=20.97 E-value=1.9e+02 Score=16.76 Aligned_cols=45 Identities=7% Similarity=0.148 Sum_probs=29.8
Q ss_pred cHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 031051 116 SHGDLKSYMNC----AGFAATDDDIKAMIRLGGGDENDGVSFDGLLKILA 161 (166)
Q Consensus 116 ~~~e~~~~l~~----~~~~~s~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 161 (166)
+...++++++. ++.++|++..+.++...-.++- ..++..+..++.
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 34455555554 5788898888888887654443 567777776664
No 299
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=20.91 E-value=2.3e+02 Score=17.76 Aligned_cols=31 Identities=13% Similarity=0.397 Sum_probs=26.1
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGD 146 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~ 146 (166)
.|+.+++.-++...| .|.++..+.++.+++|
T Consensus 74 ~i~~edI~lv~~q~g--vs~~~A~~AL~~~~gD 104 (115)
T PRK06369 74 EIPEEDIELVAEQTG--VSEEEARKALEEANGD 104 (115)
T ss_pred CCCHHHHHHHHHHHC--cCHHHHHHHHHHcCCc
Confidence 599999999988887 8888888888887655
No 300
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=20.68 E-value=3.2e+02 Score=19.37 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=21.3
Q ss_pred CCCcccHHHHHHH-HHHcC---CCCCHHHHHHHHHhhcCCCC
Q 031051 111 GDGRLSHGDLKSY-MNCAG---FAATDDDIKAMIRLGGGDEN 148 (166)
Q Consensus 111 ~~g~I~~~e~~~~-l~~~~---~~~s~~~~~~~~~~~d~~~~ 148 (166)
+.|.|+.+|+++- +..-+ ..++++++...+..+..-++
T Consensus 113 nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~ 154 (249)
T KOG3341|consen 113 NGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGS 154 (249)
T ss_pred cCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCC
Confidence 4467787777773 33322 23566666666665444443
No 301
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=20.44 E-value=1.6e+02 Score=15.91 Aligned_cols=29 Identities=10% Similarity=0.355 Sum_probs=17.5
Q ss_pred cccHHHHHHHHHHcCC----CCCHHHHHHHHHh
Q 031051 114 RLSHGDLKSYMNCAGF----AATDDDIKAMIRL 142 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~----~~s~~~~~~~~~~ 142 (166)
.|..+||...++..|. ..+...+.+.+..
T Consensus 24 PI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD~ 56 (64)
T PF09494_consen 24 PINLEELHAWLKASGIGFDRKVDPSKLKEWLDS 56 (64)
T ss_pred CccHHHHHHHHHHcCCCccceeCHHHHHHHHHH
Confidence 5666777777775555 5555555555443
No 302
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.30 E-value=1.6e+02 Score=15.88 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCCC
Q 031051 19 LKPAFDVIDADRDGKISRDDLRAFYAGRRASE 50 (166)
Q Consensus 19 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 50 (166)
++++++.++.+....|+.++...-++..|.+.
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~ 37 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPNE 37 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhccccc
Confidence 45566666655555677777777777666654
No 303
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.27 E-value=1.3e+02 Score=21.00 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 031051 110 DGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRL 142 (166)
Q Consensus 110 ~~~g~I~~~e~~~~l~~~~~~~s~~~~~~~~~~ 142 (166)
.-||+|+..|-..++..+.+.-.+++.+.+++.
T Consensus 122 kaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~ 154 (225)
T COG2979 122 KADGHIDEKERARIMQKLQESGVDPEAQAFLEQ 154 (225)
T ss_pred hhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457999999999999665443444566666554
No 304
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.20 E-value=2.4e+02 Score=22.61 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhcC--CCCCcccHHHHHHHHHh
Q 031051 118 GDLKSYMNCAGFAATDDDIKAMIRLGGG--DENDGVSFDGLLKILAV 162 (166)
Q Consensus 118 ~e~~~~l~~~~~~~s~~~~~~~~~~~d~--~~~g~i~~~eF~~~~~~ 162 (166)
.-++..+..+|..++++++..++...-. +....|+-+|+..++..
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~ 367 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAED 367 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 3456667788999998888888776332 23446888888877643
No 305
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=20.17 E-value=2.4e+02 Score=17.70 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=25.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Q 031051 114 RLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGD 146 (166)
Q Consensus 114 ~I~~~e~~~~l~~~~~~~s~~~~~~~~~~~d~~ 146 (166)
.|+.+++.-+....| .|.++..+.++.+++|
T Consensus 76 ~i~~eDI~lV~eq~g--vs~e~A~~AL~~~~gD 106 (116)
T TIGR00264 76 EITEDDIELVMKQCN--VSKEEARRALEECGGD 106 (116)
T ss_pred CCCHHHHHHHHHHhC--cCHHHHHHHHHHcCCC
Confidence 399999999888887 7888888888887665
No 306
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=20.13 E-value=2.1e+02 Score=17.00 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCCcccHHHHHHHHHhhhc
Q 031051 147 ENDGVSFDGLLKILAVDTV 165 (166)
Q Consensus 147 ~~g~i~~~eF~~~~~~~~~ 165 (166)
..++++.++|+=.+++||.
T Consensus 51 r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 51 RRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred CCCCCCHHHHHHHHhcCHH
Confidence 5678999999999988874
Done!