Your job contains 1 sequence.
>031052
MKLPATSSSKAPVKFRMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTV
RDLKLPPQFITQIAQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDL
NNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEVMIIPPL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031052
(166 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-991008-16 - symbol:smarcb1b "SWI/SNF relate... 228 1.1e-18 1
ZFIN|ZDB-GENE-041114-5 - symbol:smarcb1a "SWI/SNF related... 225 2.2e-18 1
FB|FBgn0011715 - symbol:Snr1 "Snf5-related 1" species:722... 223 3.5e-18 1
UNIPROTKB|B5MCL5 - symbol:SMARCB1 "SWI/SNF-related matrix... 218 7.5e-18 1
RGD|1308761 - symbol:Smarcb1 "SWI/SNF related, matrix ass... 218 1.4e-17 1
UNIPROTKB|Q5BIN2 - symbol:SMARCB1 "SWI/SNF-related matrix... 218 1.6e-17 1
UNIPROTKB|E2RMD3 - symbol:SMARCB1 "Uncharacterized protei... 218 1.6e-17 1
UNIPROTKB|Q12824 - symbol:SMARCB1 "SWI/SNF-related matrix... 218 1.6e-17 1
UNIPROTKB|F2Z4X9 - symbol:SMARCB1 "Uncharacterized protei... 218 1.6e-17 1
MGI|MGI:1328366 - symbol:Smarcb1 "SWI/SNF related, matrix... 218 1.6e-17 1
UNIPROTKB|G3V935 - symbol:Smarcb1 "SWI/SNF related, matri... 218 1.6e-17 1
UNIPROTKB|Q5ZK40 - symbol:SMARCB1 "SWI/SNF-related matrix... 218 1.6e-17 1
UNIPROTKB|G5E975 - symbol:SMARCB1 "SWI/SNF related, matri... 218 1.7e-17 1
ASPGD|ASPL0000069514 - symbol:AN7297 species:162425 "Emer... 208 1.0e-15 1
SGD|S000000493 - symbol:SNF5 "Subunit of the SWI/SNF chro... 201 7.0e-15 1
WB|WBGene00011111 - symbol:snfc-5 species:6239 "Caenorhab... 190 2.0e-14 1
UNIPROTKB|Q21831 - symbol:snfc-5 "Protein SNFC-5" species... 190 2.0e-14 1
DICTYBASE|DDB_G0279373 - symbol:snf5 "SNF5 related protei... 175 1.6e-12 1
POMBASE|SPCC16A11.14 - symbol:sfh1 "RSC complex subunit S... 171 3.1e-12 1
SGD|S000004313 - symbol:SFH1 "Component of the RSC chroma... 167 8.9e-12 1
CGD|CAL0001815 - symbol:orf19.5093 species:5476 "Candida ... 165 9.3e-12 1
POMBASE|SPAC2F7.08c - symbol:snf5 "SWI/SNF complex subuni... 106 6.8e-11 2
UNIPROTKB|G4MKE0 - symbol:MGG_10538 "Uncharacterized prot... 78 6.2e-05 3
UNIPROTKB|G4N850 - symbol:MGG_06315 "Transcription regula... 114 0.00012 1
>ZFIN|ZDB-GENE-991008-16 [details] [associations]
symbol:smarcb1b "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily b, member 1b"
species:7955 "Danio rerio" [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0090544 "BAF-type complex" evidence=IBA] [GO:0006281 "DNA
repair" evidence=IBA] [GO:0006337 "nucleosome disassembly"
evidence=IBA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IBA] [GO:0030154 "cell differentiation" evidence=IBA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IBA] [GO:0044772 "mitotic cell cycle phase transition"
evidence=IBA] InterPro:IPR006939 InterPro:IPR017393 Pfam:PF04855
PIRSF:PIRSF038126 ZFIN:ZDB-GENE-991008-16 GO:GO:0006338
GO:GO:0016585 GO:GO:0000228 PANTHER:PTHR10019
GeneTree:ENSGT00440000038585 EMBL:CR936477 IPI:IPI00858745
Ensembl:ENSDART00000062190 ArrayExpress:F1QKK0 Bgee:F1QKK0
Uniprot:F1QKK0
Length = 382
Score = 228 (85.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 50/139 (35%), Positives = 84/139 (60%)
Query: 20 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQ 78
A+ LVPIRLD+E +GQ+ +DAFTWN ++ +FA+ DL L P F+ IA +I+
Sbjct: 176 AEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIR 235
Query: 79 TQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDM 138
Q+ + + + T ++++ IKL++ V + + D F WD++ E+ PE FA C+++
Sbjct: 236 QQIESYPTDSILEEQTDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPESFALKLCSEL 294
Query: 139 GIEDPEVGPAVAFAIREQL 157
G+ E +A++IR QL
Sbjct: 295 GLGG-EFVTTIAYSIRGQL 312
>ZFIN|ZDB-GENE-041114-5 [details] [associations]
symbol:smarcb1a "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily b, member 1a"
species:7955 "Danio rerio" [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0044772 "mitotic cell cycle phase transition" evidence=IBA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IBA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0006337 "nucleosome disassembly" evidence=IBA] [GO:0030154
"cell differentiation" evidence=IBA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IBA] [GO:0090544
"BAF-type complex" evidence=IBA] [GO:0006281 "DNA repair"
evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006939 InterPro:IPR017393
Pfam:PF04855 PIRSF:PIRSF038126 ZFIN:ZDB-GENE-041114-5 GO:GO:0006355
GO:GO:0006351 GO:GO:0006338 GO:GO:0016585 GO:GO:0000228
eggNOG:NOG291299 PANTHER:PTHR10019 GeneTree:ENSGT00440000038585
HOGENOM:HOG000015760 HOVERGEN:HBG011709 KO:K11648 OMA:QFAEVLC
OrthoDB:EOG4BK53X EMBL:BC085668 IPI:IPI00481110
RefSeq:NP_001007297.1 UniGene:Dr.84320 STRING:Q5U379 PRIDE:Q5U379
Ensembl:ENSDART00000049944 GeneID:799716 KEGG:dre:799716 CTD:799716
InParanoid:Q5U379 NextBio:20933945 ArrayExpress:Q5U379 Bgee:Q5U379
Uniprot:Q5U379
Length = 373
Score = 225 (84.3 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +FA+ DL L P F+ IA +I+ Q+
Sbjct: 174 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQI 233
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + D ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 234 ESYPTDSILDEQMDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 292
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 293 G-EFVTTIAYSIRGQL 307
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE FA C+D+ + PA+A AIR+
Sbjct: 172 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQ 231
Query: 156 QL 157
Q+
Sbjct: 232 QI 233
>FB|FBgn0011715 [details] [associations]
symbol:Snr1 "Snf5-related 1" species:7227 "Drosophila
melanogaster" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;NAS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;NAS] [GO:0035060 "brahma complex"
evidence=NAS;IDA;TAS] [GO:0003713 "transcription coactivator
activity" evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0002165 "instar larval or pupal development" evidence=NAS]
[GO:0001700 "embryonic development via the syncytial blastoderm"
evidence=NAS] [GO:0070984 "SET domain binding" evidence=IPI]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IMP] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0008544
"epidermis development" evidence=IMP] [GO:0008586 "imaginal
disc-derived wing vein morphogenesis" evidence=IMP] [GO:0008587
"imaginal disc-derived wing margin morphogenesis" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] InterPro:IPR006939
InterPro:IPR017393 Pfam:PF04855 PIRSF:PIRSF038126 EMBL:AE014297
GO:GO:0045893 GO:GO:0008285 GO:GO:0008586 GO:GO:0007474
GO:GO:0007517 GO:GO:0008544 GO:GO:0043044 GO:GO:0000228
GO:GO:0008587 GO:GO:0035060 GO:GO:0070983 eggNOG:NOG291299
PANTHER:PTHR10019 GeneTree:ENSGT00440000038585 KO:K11648
OMA:QFAEVLC EMBL:U28485 EMBL:AY070501 RefSeq:NP_730935.1
UniGene:Dm.4358 DIP:DIP-17554N IntAct:Q24090 MINT:MINT-332338
STRING:Q24090 EnsemblMetazoa:FBtr0078682 GeneID:40657
KEGG:dme:Dmel_CG1064 UCSC:CG1064-RA CTD:40657 FlyBase:FBgn0011715
HOGENOM:HOG000202416 InParanoid:Q24090 OrthoDB:EOG4CRJFN
GenomeRNAi:40657 NextBio:819884 Uniprot:Q24090
Length = 370
Score = 223 (83.6 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 52/136 (38%), Positives = 80/136 (58%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E EGQ+ +D FTWN ++ FA+ DL L P F+ IAQ+I+ Q+
Sbjct: 170 LVPIRLDMELEGQKLRDTFTWNKNESMITPEQFAEVLCDDLDLNPLPFVPAIAQAIRQQI 229
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
F + T ++ V +KL++ V +T + D WD++ ++PEEFA C ++G+
Sbjct: 230 EAFPNDPPILEETCDQRVIVKLNIHVGNTSLVDQVEWDMSEKNNNPEEFAIKLCAELGLG 289
Query: 142 DPEVGPAVAFAIREQL 157
E A+A++IR QL
Sbjct: 290 G-EFVTAIAYSIRGQL 304
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ + ++D F W+ N PE+FA C+D+ + PA+A AIR+
Sbjct: 168 ECLVPIRLDMELEGQKLRDTFTWNKNESMITPEQFAEVLCDDLDLNPLPFVPAIAQAIRQ 227
Query: 156 QLYEVMIIPPL 166
Q+ PP+
Sbjct: 228 QIEAFPNDPPI 238
>UNIPROTKB|B5MCL5 [details] [associations]
symbol:SMARCB1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily B member 1"
species:9606 "Homo sapiens" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR006939 Pfam:PF04855 GO:GO:0005730
GO:GO:0006338 GO:GO:0000228 EMBL:AP000350 EMBL:AP000349
PANTHER:PTHR10019 HOGENOM:HOG000015760 HOVERGEN:HBG011709
HGNC:HGNC:11103 ChiTaRS:SMARCB1 IPI:IPI00879096
ProteinModelPortal:B5MCL5 STRING:B5MCL5 Ensembl:ENST00000407082
ArrayExpress:B5MCL5 Bgee:B5MCL5 Uniprot:B5MCL5
Length = 339
Score = 218 (81.8 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 140 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 199
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 200 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 258
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 259 G-EFVTTIAYSIRGQL 273
Score = 124 (48.7 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 74 AQSIQTQLTEFRSYEGQDMYTA-------EKIVPIKLDLRVNHTLIKDHFLWDLNNYESD 126
A SI T+ + S++ D E +VPI+LD+ ++ ++D F W++N
Sbjct: 109 AVSISTEPPTYLSFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMT 168
Query: 127 PEEFARTFCNDMGIEDPEVGPAVAFAIREQL 157
PE F+ C+D+ + PA+A AIR+Q+
Sbjct: 169 PEMFSEILCDDLDLNPLTFVPAIASAIRQQI 199
>RGD|1308761 [details] [associations]
symbol:Smarcb1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily b, member 1"
species:10116 "Rattus norvegicus" [GO:0001741 "XY body"
evidence=ISO] [GO:0001824 "blastocyst development" evidence=ISO]
[GO:0001835 "blastocyst hatching" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006337 "nucleosome disassembly"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0008285 "negative
regulation of cell proliferation" evidence=ISO] [GO:0016514
"SWI/SNF complex" evidence=ISO] [GO:0030154 "cell differentiation"
evidence=ISO] [GO:0030957 "Tat protein binding" evidence=ISO]
[GO:0043923 "positive regulation by host of viral transcription"
evidence=ISO] [GO:0045090 "retroviral genome replication"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=ISO] [GO:0071565 "nBAF complex" evidence=ISO]
InterPro:IPR006939 InterPro:IPR017393 Pfam:PF04855
PIRSF:PIRSF038126 RGD:1308761 GO:GO:0008285 GO:GO:0030154
GO:GO:0051091 GO:GO:0005730 GO:GO:0045944 GO:GO:0006338
GO:GO:0003713 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0006337 GO:GO:0000228 GO:GO:0001741 EMBL:CH473988
GO:GO:0001835 GO:GO:0043923 eggNOG:NOG291299 PANTHER:PTHR10019
CTD:6598 HOGENOM:HOG000015760 HOVERGEN:HBG011709 KO:K11648
GO:GO:0045090 OrthoDB:EOG4BK53X UniGene:Rn.73954 EMBL:BC099195
IPI:IPI00389414 RefSeq:NP_001020899.1 IntAct:Q4KLI0 STRING:Q4KLI0
GeneID:361825 KEGG:rno:361825 UCSC:RGD:1308761 InParanoid:Q4KLI0
NextBio:677745 Genevestigator:Q4KLI0 Uniprot:Q4KLI0
Length = 376
Score = 218 (81.8 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 177 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 236
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 237 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 295
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 296 G-EFVTTIAYSIRGQL 310
Score = 123 (48.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 175 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 234
Query: 156 QL 157
Q+
Sbjct: 235 QI 236
>UNIPROTKB|Q5BIN2 [details] [associations]
symbol:SMARCB1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily B member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0071564 "npBAF complex" evidence=ISS] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045090 "retroviral genome replication" evidence=IEA]
[GO:0043923 "positive regulation by host of viral transcription"
evidence=IEA] [GO:0030957 "Tat protein binding" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0008285 "negative regulation of
cell proliferation" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001741 "XY body" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006939 InterPro:IPR017393 Pfam:PF04855
PIRSF:PIRSF038126 GO:GO:0008285 GO:GO:0007399 GO:GO:0030154
GO:GO:0051091 GO:GO:0005730 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0007049 GO:GO:0003713 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0006337 GO:GO:0000228
GO:GO:0001741 GO:GO:0001835 GO:GO:0043923 eggNOG:NOG291299
PANTHER:PTHR10019 GeneTree:ENSGT00440000038585 EMBL:BT021192
EMBL:BC133572 IPI:IPI00717869 RefSeq:NP_001035647.1 UniGene:Bt.4638
STRING:Q5BIN2 PRIDE:Q5BIN2 Ensembl:ENSBTAT00000013170 GeneID:537412
KEGG:bta:537412 CTD:6598 HOGENOM:HOG000015760 HOVERGEN:HBG011709
KO:K11648 OMA:QFAEVLC NextBio:20877131 ArrayExpress:Q5BIN2
GO:GO:0045090 Uniprot:Q5BIN2
Length = 385
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 304
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 305 G-EFVTTIAYSIRGQL 319
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 156 QL 157
Q+
Sbjct: 244 QI 245
>UNIPROTKB|E2RMD3 [details] [associations]
symbol:SMARCB1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001741 "XY body" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045090 "retroviral genome replication"
evidence=IEA] [GO:0043923 "positive regulation by host of viral
transcription" evidence=IEA] [GO:0030957 "Tat protein binding"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IEA] InterPro:IPR006939 InterPro:IPR017393
Pfam:PF04855 PIRSF:PIRSF038126 GO:GO:0008285 GO:GO:0030154
GO:GO:0051091 GO:GO:0005730 GO:GO:0045944 GO:GO:0006338
GO:GO:0003713 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0006337 GO:GO:0000228 GO:GO:0001741 GO:GO:0001835
GO:GO:0043923 PANTHER:PTHR10019 GeneTree:ENSGT00440000038585
CTD:6598 KO:K11648 OMA:QFAEVLC GO:GO:0045090 EMBL:AAEX03014841
RefSeq:XP_857270.2 ProteinModelPortal:E2RMD3
Ensembl:ENSCAFT00000022399 GeneID:486407 KEGG:cfa:486407
NextBio:20860190 Uniprot:E2RMD3
Length = 385
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 304
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 305 G-EFVTTIAYSIRGQL 319
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 156 QL 157
Q+
Sbjct: 244 QI 245
>UNIPROTKB|Q12824 [details] [associations]
symbol:SMARCB1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily B member 1"
species:9606 "Homo sapiens" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0001741 "XY body" evidence=IEA]
[GO:0001835 "blastocyst hatching" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0045090 "retroviral genome replication"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0015074
"DNA integration" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051091 "positive regulation of sequence-specific
DNA binding transcription factor activity" evidence=IDA]
[GO:0002039 "p53 binding" evidence=IPI] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0003713 "transcription coactivator activity"
evidence=IMP;NAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0043923 "positive regulation by host of viral
transcription" evidence=IMP] [GO:0030957 "Tat protein binding"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR006939 InterPro:IPR017393 Pfam:PF04855
PIRSF:PIRSF038126 GO:GO:0019048 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030154 GO:GO:0051091 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0006338
GO:GO:0007049 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 Orphanet:1465 GO:GO:0006337 GO:GO:0000228
GO:GO:0001741 GO:GO:0015074 GO:GO:0001835 GO:GO:0043923 MIM:162091
Orphanet:93921 Orphanet:263662 eggNOG:NOG291299 PANTHER:PTHR10019
Orphanet:231108 CTD:6598 HOGENOM:HOG000015760 HOVERGEN:HBG011709
KO:K11648 GO:GO:0045090 OrthoDB:EOG4BK53X EMBL:U04847 EMBL:Y17118
EMBL:Y17119 EMBL:Y17120 EMBL:Y17121 EMBL:Y17122 EMBL:Y17123
EMBL:Y17124 EMBL:Y17125 EMBL:Y17126 EMBL:AJ011738 EMBL:AJ011737
EMBL:AB017523 EMBL:CR456581 EMBL:AK021419 EMBL:DQ230988
EMBL:BC117114 EMBL:BC143667 IPI:IPI00029695 IPI:IPI00745019
PIR:S54705 RefSeq:NP_001007469.1 RefSeq:NP_003064.2
UniGene:Hs.534350 ProteinModelPortal:Q12824 DIP:DIP-27550N
IntAct:Q12824 MINT:MINT-94943 STRING:Q12824 PhosphoSite:Q12824
DMDM:51338799 PaxDb:Q12824 PRIDE:Q12824 DNASU:6598
Ensembl:ENST00000263121 Ensembl:ENST00000407422 GeneID:6598
KEGG:hsa:6598 UCSC:uc002zya.3 GeneCards:GC22P024129 HGNC:HGNC:11103
HPA:CAB009196 HPA:HPA018248 HPA:HPA019127 MIM:601607 MIM:609322
MIM:614608 neXtProt:NX_Q12824 Orphanet:69077 PharmGKB:PA35953
ChiTaRS:SMARCB1 GenomeRNAi:6598 NextBio:25665 ArrayExpress:Q12824
Bgee:Q12824 CleanEx:HS_SMARCB1 Genevestigator:Q12824
GermOnline:ENSG00000099956 Uniprot:Q12824
Length = 385
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 304
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 305 G-EFVTTIAYSIRGQL 319
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 156 QL 157
Q+
Sbjct: 244 QI 245
>UNIPROTKB|F2Z4X9 [details] [associations]
symbol:SMARCB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045090
"retroviral genome replication" evidence=IEA] [GO:0043923 "positive
regulation by host of viral transcription" evidence=IEA]
[GO:0030957 "Tat protein binding" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001741 "XY body" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IEA] InterPro:IPR006939 InterPro:IPR017393
Pfam:PF04855 PIRSF:PIRSF038126 GO:GO:0008285 GO:GO:0030154
GO:GO:0051091 GO:GO:0005730 GO:GO:0045944 GO:GO:0006338
GO:GO:0003713 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0006337 GO:GO:0000228 GO:GO:0001741 GO:GO:0001835
GO:GO:0043923 PANTHER:PTHR10019 GeneTree:ENSGT00440000038585
CTD:6598 KO:K11648 OMA:QFAEVLC GO:GO:0045090 EMBL:CU468588
EMBL:CU570757 RefSeq:XP_001929472.1 UniGene:Ssc.16668
ProteinModelPortal:F2Z4X9 Ensembl:ENSSSCT00000011031
GeneID:100154735 KEGG:ssc:100154735 Uniprot:F2Z4X9
Length = 385
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 304
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 305 G-EFVTTIAYSIRGQL 319
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 156 QL 157
Q+
Sbjct: 244 QI 245
>MGI|MGI:1328366 [details] [associations]
symbol:Smarcb1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily b, member 1"
species:10090 "Mus musculus" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0001741 "XY body" evidence=IDA] [GO:0001824
"blastocyst development" evidence=IMP] [GO:0001835 "blastocyst
hatching" evidence=IMP] [GO:0002039 "p53 binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006281 "DNA repair" evidence=IBA]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IBA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IBA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;IDA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IBA] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0044772 "mitotic cell cycle phase transition" evidence=IBA]
[GO:0045090 "retroviral genome replication" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0071564 "npBAF complex" evidence=IDA]
[GO:0071565 "nBAF complex" evidence=IDA] InterPro:IPR006939
InterPro:IPR017393 Pfam:PF04855 PIRSF:PIRSF038126 MGI:MGI:1328366
GO:GO:0008285 GO:GO:0007399 GO:GO:0030154 GO:GO:0051091
GO:GO:0005730 GO:GO:0045944 GO:GO:0006351 GO:GO:0006338
GO:GO:0007049 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0006337 GO:GO:0000228 GO:GO:0001741
GO:GO:0001835 GO:GO:0043923 eggNOG:NOG291299 PANTHER:PTHR10019
GeneTree:ENSGT00440000038585 CTD:6598 HOGENOM:HOG000015760
HOVERGEN:HBG011709 KO:K11648 OMA:QFAEVLC GO:GO:0045090
OrthoDB:EOG4BK53X EMBL:AJ011740 EMBL:AJ011739 EMBL:BC025163
IPI:IPI00129145 IPI:IPI00350396 RefSeq:NP_035548.1
UniGene:Mm.279751 UniGene:Mm.405473 ProteinModelPortal:Q9Z0H3
DIP:DIP-34373N IntAct:Q9Z0H3 STRING:Q9Z0H3 PhosphoSite:Q9Z0H3
PaxDb:Q9Z0H3 PRIDE:Q9Z0H3 Ensembl:ENSMUST00000000925
Ensembl:ENSMUST00000121304 GeneID:20587 KEGG:mmu:20587
InParanoid:Q9Z0H3 NextBio:298887 Bgee:Q9Z0H3 Genevestigator:Q9Z0H3
GermOnline:ENSMUSG00000000902 Uniprot:Q9Z0H3
Length = 385
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 304
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 305 G-EFVTTIAYSIRGQL 319
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 156 QL 157
Q+
Sbjct: 244 QI 245
>UNIPROTKB|G3V935 [details] [associations]
symbol:Smarcb1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily b, member 1, isoform
CRA_a" species:10116 "Rattus norvegicus" [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0001741 "XY body" evidence=IEA]
[GO:0001835 "blastocyst hatching" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0030957 "Tat protein binding" evidence=IEA]
[GO:0043923 "positive regulation by host of viral transcription"
evidence=IEA] [GO:0045090 "retroviral genome replication"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR006939 InterPro:IPR017393 Pfam:PF04855
PIRSF:PIRSF038126 GO:GO:0006338 GO:GO:0016585 GO:GO:0000228
EMBL:CH473988 PANTHER:PTHR10019 GeneTree:ENSGT00440000038585
OMA:QFAEVLC UniGene:Rn.73954 ProteinModelPortal:G3V935 PRIDE:G3V935
Ensembl:ENSRNOT00000029458 Uniprot:G3V935
Length = 385
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 304
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 305 G-EFVTTIAYSIRGQL 319
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 156 QL 157
Q+
Sbjct: 244 QI 245
>UNIPROTKB|Q5ZK40 [details] [associations]
symbol:SMARCB1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily B member 1"
species:9031 "Gallus gallus" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0001741 "XY body" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0030957 "Tat protein binding" evidence=IEA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IEA]
[GO:0045090 "retroviral genome replication" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] InterPro:IPR006939
InterPro:IPR017393 Pfam:PF04855 PIRSF:PIRSF038126 GO:GO:0008285
GO:GO:0007399 GO:GO:0030154 GO:GO:0051091 GO:GO:0005730
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 GO:GO:0003713
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0006337
GO:GO:0000228 GO:GO:0001741 CTD:4320 KO:K07993 eggNOG:NOG291299
PANTHER:PTHR10019 GeneTree:ENSGT00440000038585 HOGENOM:HOG000015760
HOVERGEN:HBG011709 OMA:QFAEVLC GO:GO:0045090 EMBL:AJ720244
IPI:IPI00735132 RefSeq:NP_001034344.1 UniGene:Gga.4349
UniGene:Gga.48681 STRING:Q5ZK40 Ensembl:ENSGALT00000009622
GeneID:769489 KEGG:gga:769489 InParanoid:Q5ZK40 OrthoDB:EOG4BK53X
NextBio:20813862 Uniprot:Q5ZK40
Length = 386
Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 187 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 246
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 247 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 305
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 306 G-EFVTTIAYSIRGQL 320
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 185 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 244
Query: 156 QL 157
Q+
Sbjct: 245 QI 246
>UNIPROTKB|G5E975 [details] [associations]
symbol:SMARCB1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily b, member 1, isoform
CRA_c" species:9606 "Homo sapiens" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR006939 InterPro:IPR017393 Pfam:PF04855
PIRSF:PIRSF038126 GO:GO:0005730 EMBL:CH471095 GO:GO:0006338
GO:GO:0016585 GO:GO:0000228 EMBL:AP000350 EMBL:AP000349
PANTHER:PTHR10019 OMA:QFAEVLC UniGene:Hs.534350 HGNC:HGNC:11103
ChiTaRS:SMARCB1 ProteinModelPortal:G5E975 PRIDE:G5E975
Ensembl:ENST00000344921 ArrayExpress:G5E975 Bgee:G5E975
Uniprot:G5E975
Length = 394
Score = 218 (81.8 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 47/136 (34%), Positives = 83/136 (61%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 195 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 254
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 255 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 313
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 314 G-EFVTTIAYSIRGQL 328
Score = 123 (48.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 193 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 252
Query: 156 QL 157
Q+
Sbjct: 253 QI 254
>ASPGD|ASPL0000069514 [details] [associations]
symbol:AN7297 species:162425 "Emericella nidulans"
[GO:1900400 "regulation of iron ion import by regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:1900389 "regulation of glucose import by regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0010811 "positive regulation of cell-substrate adhesion"
evidence=IEA] [GO:0010972 "negative regulation of G2/M transition
of mitotic cell cycle" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR006939 Pfam:PF04855
GO:GO:0006338 EMBL:BN001304 EMBL:AACD01000127 GO:GO:0000228
eggNOG:NOG291299 PANTHER:PTHR10019 KO:K11648 OrthoDB:EOG4J9R74
RefSeq:XP_680566.1 EnsemblFungi:CADANIAT00000141 GeneID:2870177
KEGG:ani:AN7297.2 HOGENOM:HOG000168208 OMA:DTFTWNL Uniprot:Q5AWN3
Length = 798
Score = 208 (78.3 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 56/164 (34%), Positives = 87/164 (53%)
Query: 9 SKAPVKFRMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQ 68
S+ +K + ++LVPIRLDI+ E + +D FTWN D +FA++ V DL LP +
Sbjct: 222 SRKDMKTQSEQLEHLVPIRLDIDWEKVKIRDTFTWNLHDRVVSPDLFAEKLVEDLGLPLE 281
Query: 69 ----FITQIAQSIQTQLTEFRSY-----EGQDM---YTAEKI----VPIKLDLRVNHTLI 112
+ I+QSIQ Q+ +F + E D Y+A K + +KL++ + +
Sbjct: 282 SCGPLVRMISQSIQEQICDFYPHVHIEEEALDPHLPYSAYKNDELRIVVKLNITIGQHTL 341
Query: 113 KDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQ 156
D F WD+N+ + PEEFA D+ + E A+A +IREQ
Sbjct: 342 VDQFEWDINDPHNSPEEFAARMTTDLSLSG-EFTTAIAHSIREQ 384
>SGD|S000000493 [details] [associations]
symbol:SNF5 "Subunit of the SWI/SNF chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IMP;IPI] [GO:0016514 "SWI/SNF complex" evidence=IDA;IMP]
[GO:0006338 "chromatin remodeling" evidence=IEA;IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IMP]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0005987 "sucrose
catabolic process" evidence=IMP] [GO:0000436 "carbon catabolite
activation of transcription from RNA polymerase II promoter"
evidence=IGI] InterPro:IPR006939 Pfam:PF04855 SGD:S000000493
GO:GO:0006351 EMBL:BK006936 GO:GO:0006338 GO:GO:0016514
GO:GO:0000724 GO:GO:0005987 EMBL:X76053 GO:GO:0000228 GO:GO:0001102
GO:GO:0000436 GeneTree:ENSGT00700000104696 KO:K14708
eggNOG:NOG291299 PANTHER:PTHR10019 KO:K11648 OrthoDB:EOG4J9R74
EMBL:M36482 EMBL:Z36158 PIR:S44551 RefSeq:NP_009848.4
RefSeq:NP_009853.3 DIP:DIP-2364N IntAct:P18480 MINT:MINT-424303
STRING:P18480 PaxDb:P18480 PeptideAtlas:P18480 EnsemblFungi:YBR289W
GeneID:852592 GeneID:852597 KEGG:sce:YBR289W KEGG:sce:YBR294W
CYGD:YBR289w OMA:IREQVHM NextBio:971757 Genevestigator:P18480
GermOnline:YBR289W Uniprot:P18480
Length = 905
Score = 201 (75.8 bits), Expect = 7.0e-15, P = 7.0e-15
Identities = 52/151 (34%), Positives = 83/151 (54%)
Query: 19 TADNLVPIRLDIETEGQRY--KDAFTWNPSDPDSEVVVFAKRTVRDLKLPP----QFITQ 72
T++ LVPIRL+ + + R+ +D WN +D ++ F +RD + Q I
Sbjct: 453 TSEQLVPIRLEFDQDRDRFFLRDTLLWNKNDKLIKIEDFVDDMLRDYRFEDATREQHIDT 512
Query: 73 IAQSIQTQLTEFRS--Y-E-GQDMYTAEKI-VPIKLDLRVNHTLIKDHFLWDLNNYESDP 127
I QSIQ Q+ EF+ Y E QD + + + IKLD+ V + D F WD++N ++ P
Sbjct: 513 ICQSIQEQIQEFQGNPYIELNQDRLGGDDLRIRIKLDIVVGQNQLIDQFEWDISNSDNCP 572
Query: 128 EEFARTFCNDMGIEDPEVGPAVAFAIREQLY 158
EEFA + C ++ + E A+A +IREQ++
Sbjct: 573 EEFAESMCQELELPG-EFVTAIAHSIREQVH 602
>WB|WBGene00011111 [details] [associations]
symbol:snfc-5 species:6239 "Caenorhabditis elegans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
InterPro:IPR006939 InterPro:IPR017393 Pfam:PF04855
PIRSF:PIRSF038126 GO:GO:0009792 GO:GO:0006898 GO:GO:0018991
GO:GO:0006915 GO:GO:0002119 GO:GO:0040017 GO:GO:0006338
GO:GO:0040035 GO:GO:0016585 GO:GO:0000228 EMBL:Z32683
eggNOG:NOG291299 PANTHER:PTHR10019 GeneTree:ENSGT00440000038585
HOGENOM:HOG000015760 KO:K11648 PIR:E88427 PIR:S43599
RefSeq:NP_497890.1 ProteinModelPortal:Q21831 IntAct:Q21831
STRING:Q21831 PaxDb:Q21831 EnsemblMetazoa:R07E5.3.1
EnsemblMetazoa:R07E5.3.2 GeneID:175571 KEGG:cel:CELE_R07E5.3
UCSC:R07E5.3 CTD:175571 WormBase:R07E5.3 InParanoid:Q21831
OMA:DTFTWNM NextBio:888722 Uniprot:Q21831
Length = 381
Score = 190 (71.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 44/138 (31%), Positives = 75/138 (54%)
Query: 21 DNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLP-PQFITQIAQSIQT 79
++LVPIRLD+E +G + +D FT+N ++ + A+ DL LP F I +I
Sbjct: 179 EDLVPIRLDMELDGIKLRDTFTFNKNEKMITPEMIAEIMCEDLDLPLAVFQPAITAAINQ 238
Query: 80 QLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMG 139
QL D+ ++ +KL++ V + + D F WD+++ + PEEF+R C ++G
Sbjct: 239 QLEASTEAPPLDVNICDQRAVLKLNINVGNQSLVDQFEWDMSDPNNSPEEFSRNICKELG 298
Query: 140 IEDPEVGPAVAFAIREQL 157
+ E +A++IR QL
Sbjct: 299 LGG-EFMSGIAYSIRGQL 315
>UNIPROTKB|Q21831 [details] [associations]
symbol:snfc-5 "Protein SNFC-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR006939 InterPro:IPR017393 Pfam:PF04855
PIRSF:PIRSF038126 GO:GO:0009792 GO:GO:0006898 GO:GO:0018991
GO:GO:0006915 GO:GO:0002119 GO:GO:0040017 GO:GO:0006338
GO:GO:0040035 GO:GO:0016585 GO:GO:0000228 EMBL:Z32683
eggNOG:NOG291299 PANTHER:PTHR10019 GeneTree:ENSGT00440000038585
HOGENOM:HOG000015760 KO:K11648 PIR:E88427 PIR:S43599
RefSeq:NP_497890.1 ProteinModelPortal:Q21831 IntAct:Q21831
STRING:Q21831 PaxDb:Q21831 EnsemblMetazoa:R07E5.3.1
EnsemblMetazoa:R07E5.3.2 GeneID:175571 KEGG:cel:CELE_R07E5.3
UCSC:R07E5.3 CTD:175571 WormBase:R07E5.3 InParanoid:Q21831
OMA:DTFTWNM NextBio:888722 Uniprot:Q21831
Length = 381
Score = 190 (71.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 44/138 (31%), Positives = 75/138 (54%)
Query: 21 DNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLP-PQFITQIAQSIQT 79
++LVPIRLD+E +G + +D FT+N ++ + A+ DL LP F I +I
Sbjct: 179 EDLVPIRLDMELDGIKLRDTFTFNKNEKMITPEMIAEIMCEDLDLPLAVFQPAITAAINQ 238
Query: 80 QLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMG 139
QL D+ ++ +KL++ V + + D F WD+++ + PEEF+R C ++G
Sbjct: 239 QLEASTEAPPLDVNICDQRAVLKLNINVGNQSLVDQFEWDMSDPNNSPEEFSRNICKELG 298
Query: 140 IEDPEVGPAVAFAIREQL 157
+ E +A++IR QL
Sbjct: 299 LGG-EFMSGIAYSIRGQL 315
>DICTYBASE|DDB_G0279373 [details] [associations]
symbol:snf5 "SNF5 related protein" species:44689
"Dictyostelium discoideum" [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR006939 Pfam:PF04855
dictyBase:DDB_G0279373 GO:GO:0006338 EMBL:AAFI02000030
GO:GO:0000228 eggNOG:NOG291299 PANTHER:PTHR10019 RefSeq:XP_641825.2
EnsemblProtists:DDB0233488 GeneID:8622017 KEGG:ddi:DDB_G0279373
OMA:REFENII Uniprot:Q54WV6
Length = 496
Score = 175 (66.7 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 50/148 (33%), Positives = 72/148 (48%)
Query: 18 PTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSI 77
P D L+PIRLDI++ + D WN ++ D ++KR +L P F I SI
Sbjct: 245 PGDDFLIPIRLDIQSSVYKIGDYLLWNLNERDISPEYYSKRLCIELDYPEWFEFMITNSI 304
Query: 78 QTQLT-------EFRSYEGQ-DMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEE 129
Q+ EFR + E IV I LDL VN +KD F WD+ + PE
Sbjct: 305 ANQIIYGKSIIKEFRKILPKLKQIFKECIVTISLDLNVNGLYLKDRFEWDIIG-PNLPES 363
Query: 130 FARTFCNDMGIEDPEVGPAVAFAIREQL 157
FA++ D+G+ E + ++IREQ+
Sbjct: 364 FAKSISMDLGLSR-EFENIIVYSIREQI 390
>POMBASE|SPCC16A11.14 [details] [associations]
symbol:sfh1 "RSC complex subunit Sfh1" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] InterPro:IPR000679
InterPro:IPR006939 InterPro:IPR013088 Pfam:PF00320 Pfam:PF04855
PomBase:SPCC16A11.14 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0043565 GO:GO:0008270
Gene3D:3.30.50.10 GO:GO:0003700 GO:GO:0006357 GO:GO:0006351
GO:GO:0000790 GO:GO:0016586 GO:GO:0043044 PIR:T41087
RefSeq:NP_588001.1 DIP:DIP-38847N IntAct:Q9USM3 MINT:MINT-4708220
STRING:Q9USM3 PRIDE:Q9USM3 EnsemblFungi:SPCC16A11.14.1
GeneID:2539144 KEGG:spo:SPCC16A11.14 eggNOG:NOG291299 KO:K11770
OMA:ISHALHE OrthoDB:EOG4DNJCT NextBio:20800316 PANTHER:PTHR10019
Uniprot:Q9USM3
Length = 418
Score = 171 (65.3 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 48/143 (33%), Positives = 71/143 (49%)
Query: 21 DNLVPIRLDIETEGQ-RYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQ-FITQIAQSIQ 78
D +PIRLDIE R KD F WN ++ VFA+ DL L + TQI+ SI+
Sbjct: 115 DVYIPIRLDIELPNNYRLKDTFLWNMNEQVMTPDVFAQILCADLDLSTNVYGTQISSSIR 174
Query: 79 TQLTEFRSYEGQDMYTA-EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCND 137
Q+ E+ M E +V + +++ D W+L + PEEF+ CND
Sbjct: 175 AQIEEYAPVAEVPMPKGQEMLVVFNIQVQLAQLSYNDQVEWNLTS-PLTPEEFSVLTCND 233
Query: 138 MGIEDPEVGPAVAFAIREQLYEV 160
+G+ E P +A+AI E L ++
Sbjct: 234 LGLSG-ESRPEIAYAIHECLLKL 255
Score = 115 (45.5 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 67 PQFITQIAQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRV-NHTLIKDHFLWDLNNYES 125
P+F T+ T + E +D+Y +PI+LD+ + N+ +KD FLW++N
Sbjct: 91 PRFATKTRHIYVTDEQLKCAAEERDVY-----IPIRLDIELPNNYRLKDTFLWNMNEQVM 145
Query: 126 DPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYE 159
P+ FA+ C D+ + G ++ +IR Q+ E
Sbjct: 146 TPDVFAQILCADLDLSTNVYGTQISSSIRAQIEE 179
>SGD|S000004313 [details] [associations]
symbol:SFH1 "Component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0016586 "RSC
complex" evidence=IDA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IDA] [GO:0007059 "chromosome
segregation" evidence=IGI] [GO:0031055 "chromatin remodeling at
centromere" evidence=IMP] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000086 "G2/M transition of mitotic cell cycle"
evidence=IMP] [GO:0033262 "regulation of DNA replication involved
in S phase" evidence=IGI] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0000228 "nuclear chromosome" evidence=IEA] InterPro:IPR006939
InterPro:IPR017393 Pfam:PF04855 PIRSF:PIRSF038126 SGD:S000004313
GO:GO:0000086 GO:GO:0007059 GO:GO:0006355 EMBL:BK006945
GO:GO:0006302 GO:GO:0006368 GO:GO:0006337 GO:GO:0016586
GO:GO:0043044 GO:GO:0000228 EMBL:U20618 GO:GO:0031055 GO:GO:0033262
eggNOG:NOG291299 KO:K11770 PANTHER:PTHR10019 PIR:S53399
RefSeq:NP_013425.1 ProteinModelPortal:Q06168 DIP:DIP-1898N
IntAct:Q06168 MINT:MINT-398787 STRING:Q06168 PaxDb:Q06168
PeptideAtlas:Q06168 EnsemblFungi:YLR321C GeneID:851032
KEGG:sce:YLR321C CYGD:YLR321c GeneTree:ENSGT00440000038585
HOGENOM:HOG000074513 OMA:HVIINLT OrthoDB:EOG41NXW4 NextBio:967619
Genevestigator:Q06168 GermOnline:YLR321C Uniprot:Q06168
Length = 426
Score = 167 (63.8 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 40/139 (28%), Positives = 69/139 (49%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFI-TQIAQSIQTQL 81
++PI LDIE G KD F WN +D FA +DL + + TQIA I+ QL
Sbjct: 203 MIPITLDIEHMGHTIKDQFLWNYNDDSISPEEFASIYCKDLDMTSATLQTQIANIIKEQL 262
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + ++ + ++ I L + +D+F W+LN+ PE FA + D+G+
Sbjct: 263 KDLENIAATEIMSDLHVI-INLTCNLQDRFFEDNFQWNLNDKSLTPERFATSIVQDLGLT 321
Query: 142 DPEVGPAVAFAIREQLYEV 160
E P ++ ++ E + ++
Sbjct: 322 R-EFIPLISQSLHETILKI 339
>CGD|CAL0001815 [details] [associations]
symbol:orf19.5093 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0033262 "regulation of DNA replication involved in S phase"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0000086 "G2/M transition of mitotic cell cycle"
evidence=IEA] [GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR006939 Pfam:PF04855 CGD:CAL0001815 GO:GO:0006338
EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0000228 eggNOG:NOG291299
KO:K11770 PANTHER:PTHR10019 RefSeq:XP_717556.1 RefSeq:XP_717630.1
STRING:Q5A769 GeneID:3640733 GeneID:3640813 KEGG:cal:CaO19.12559
KEGG:cal:CaO19.5093 Uniprot:Q5A769
Length = 352
Score = 165 (63.1 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 48/143 (33%), Positives = 70/143 (48%)
Query: 23 LVPIRLDIET--EGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQ 80
L+PI++ IE Q+ D+F WN ++ FA+ DL LP QIA SI Q
Sbjct: 113 LIPIKIMIENLNTNQKLIDSFMWNLNESLITPTEFAEVVCSDLDLPFSMAAQIADSINQQ 172
Query: 81 LTEFRSYEGQDMYTAEK---IVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCND 137
+ E+ SY ++ K V I L + +N L +D F WD+N E PE FA D
Sbjct: 173 IEEY-SY-ASNLQLPNKGPYNVTIDLSVNLNKQLYQDRFEWDMNQNEVTPEIFAEIVVAD 230
Query: 138 MGIEDPEVGPAVAFAIREQLYEV 160
+G+ E A++ A+ E + V
Sbjct: 231 LGLS-LEFKNAISHALHEIIIRV 252
>POMBASE|SPAC2F7.08c [details] [associations]
symbol:snf5 "SWI/SNF complex subunit Snf5" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEP]
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0010811 "positive regulation of
cell-substrate adhesion" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:1900389 "regulation of glucose import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR006939 Pfam:PF04855 PomBase:SPAC2F7.08c
GO:GO:0005794 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0045944
GO:GO:0006338 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0010811 GO:GO:0000991 GO:GO:0010972 eggNOG:NOG291299
PANTHER:PTHR10019 GO:GO:1900389 GO:GO:1900400 KO:K11648 PIR:T38556
RefSeq:NP_592979.1 DIP:DIP-48379N STRING:Q09699
EnsemblFungi:SPAC2F7.08c.1 GeneID:2541801 KEGG:spo:SPAC2F7.08c
OrthoDB:EOG4J9R74 NextBio:20802889 Uniprot:Q09699
Length = 632
Score = 106 (42.4 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 22 NLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLP---PQFITQIAQSIQ 78
+LVPIRL+I+ + + +D+FTWN D + FA++ D +P + I++SIQ
Sbjct: 140 DLVPIRLEIDADRYKLRDSFTWNLYDKCISLDQFAEQICIDYDIPLHNVHIVQNISKSIQ 199
Query: 79 TQLTEFRSYEGQ 90
Q+ ++ + Q
Sbjct: 200 AQINDYEPRKAQ 211
Score = 105 (42.0 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 101 IKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQ 156
IKLD+ + + D F W+L ES EEFA C D+G+ E AVA +IREQ
Sbjct: 256 IKLDITIGRLNLIDQFEWNLFAPESSAEEFATVMCLDLGLSG-EFCTAVAHSIREQ 310
>UNIPROTKB|G4MKE0 [details] [associations]
symbol:MGG_10538 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR000679 InterPro:IPR006939
InterPro:IPR013088 Pfam:PF00320 Pfam:PF04855 GO:GO:0043565
GO:GO:0008270 Gene3D:3.30.50.10 GO:GO:0003700 GO:GO:0006338
EMBL:CM001231 GO:GO:0000228 KO:K11770 PANTHER:PTHR10019
RefSeq:XP_003710141.1 EnsemblFungi:MGG_10538T0 GeneID:2682131
KEGG:mgr:MGG_10538 Uniprot:G4MKE0
Length = 589
Score = 78 (32.5 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 101 IKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
++L++ + L D F W L + E FA+ C D+G+ V PA+ AI E
Sbjct: 313 VELNIHLGSQLYTDKFEWSLLHPPGTAEAFAKVTCEDLGLSGEWV-PAMTHAIYE 366
Score = 75 (31.5 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 32 TEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQ--FITQIAQSIQTQLTEF 84
T R KD F WN + FA + +DL LP + I +I++ I+TQL E+
Sbjct: 165 TTPYRLKDTFMWNLHETLITTDHFATQLAQDLDLPNKAHVIGEISKQIRTQLEEY 219
Score = 41 (19.5 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 23 LVPIRLDIE 31
L+PIRLD+E
Sbjct: 134 LIPIRLDVE 142
>UNIPROTKB|G4N850 [details] [associations]
symbol:MGG_06315 "Transcription regulatory protein SNF5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR006939 Pfam:PF04855
GO:GO:0006338 EMBL:CM001234 GO:GO:0000228 PANTHER:PTHR10019
KO:K11648 RefSeq:XP_003717270.1 EnsemblFungi:MGG_06315T0
GeneID:2684470 KEGG:mgr:MGG_06315 Uniprot:G4N850
Length = 771
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 45/156 (28%), Positives = 72/156 (46%)
Query: 21 DNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQ--------FITQ 72
+ LVPIR+D++ + + +D FTWN D V +FA++ + DL L PQ +TQ
Sbjct: 186 EELVPIRIDVDYDKVKLRDTFTWNLHDRLVSVDLFARQLLEDLGLTPQKDPTLYSPVLTQ 245
Query: 73 IAQSIQTQLTEFRSYEGQDM--------YTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYE 124
+ + I QL +F D Y+A K +++ +++N T I L D +E
Sbjct: 246 VGRQILDQLEDFYPSVCSDEDALDPELPYSAYKNDEMRILVKLNIT-IGQVTLVDQFEWE 304
Query: 125 -SDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYE 159
++P F N M D + A AI + E
Sbjct: 305 INNPINSPEEFANSMS-RDLSLSGEFATAIAHCIRE 339
Score = 110 (43.8 bits), Expect = 0.00048, P = 0.00048
Identities = 32/108 (29%), Positives = 51/108 (47%)
Query: 61 RDLKLPPQFITQIAQSIQTQLTEFRSYEGQDM--------YTA----EKIVPIKLDLRVN 108
+D L +TQ+ + I QL +F D Y+A E + +KL++ +
Sbjct: 234 KDPTLYSPVLTQVGRQILDQLEDFYPSVCSDEDALDPELPYSAYKNDEMRILVKLNITIG 293
Query: 109 HTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQ 156
+ D F W++NN + PEEFA + D+ + E A+A IREQ
Sbjct: 294 QVTLVDQFEWEINNPINSPEEFANSMSRDLSLSG-EFATAIAHCIREQ 340
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 166 166 0.00097 107 3 11 22 0.39 32
30 0.46 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 586 (62 KB)
Total size of DFA: 148 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.18u 0.16s 15.34t Elapsed: 00:00:01
Total cpu time: 15.18u 0.16s 15.34t Elapsed: 00:00:01
Start: Fri May 10 09:11:45 2013 End: Fri May 10 09:11:46 2013