BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031052
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 16 RMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQ 75
R+ D + P+R ++ G+ YK+ +W+P+ +VF K+P + T +Q
Sbjct: 366 RVVNLDQIAPMRFVLDLGGKSYKET-SWDPNGKKVGFIVFQS------KIPFELWTAASQ 418
Query: 76 SIQTQLTEFRSYEGQD-MYTAEKIV 99
Q + + +D +TA+ I+
Sbjct: 419 IGQATVVNYVQLYAEDSSFTAQSII 443
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 16 RMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQ 75
R+ D + P+R ++ G+ YK+ +W+P+ +VF K+P + T +Q
Sbjct: 324 RVVNLDQIAPMRFVLDLGGKSYKET-SWDPNGKKVGFIVFQS------KIPFELWTAASQ 376
Query: 76 SIQTQLTEFRSYEGQD-MYTAEKIV 99
Q + + +D +TA+ I+
Sbjct: 377 IGQATVVNYVQLYAEDSSFTAQSII 401
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 8 SSKAPVKFRMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP 67
SS + + P+ +++ ++ +I+ R KDA TW+ P+ + TV+DLK
Sbjct: 215 SSILKLTWTNPSIKSVIILKYNIQ---YRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 271
Query: 68 QFITQI 73
+++ +I
Sbjct: 272 EYVFRI 277
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 8 SSKAPVKFRMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP 67
SS + + P+ +++ ++ +I+ R KDA TW+ P+ + TV+DLK
Sbjct: 215 SSILKLTWTNPSIKSVIILKYNIQ---YRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 271
Query: 68 QFITQI 73
+++ +I
Sbjct: 272 EYVFRI 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,879,885
Number of Sequences: 62578
Number of extensions: 191992
Number of successful extensions: 440
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 9
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)