BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031052
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93045|BSH_ARATH Chromatin structure-remodeling complex protein BSH OS=Arabidopsis
thaliana GN=BSH PE=1 SV=2
Length = 240
Score = 288 bits (738), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 131/162 (80%), Positives = 148/162 (91%)
Query: 1 MKLPATSSSKAPVKFRMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTV 60
MK ++ K PVKFRMPTA+NLVPIRLDI+ EGQRYKDAFTWNPSDPD+EVV+FAKRTV
Sbjct: 1 MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60
Query: 61 RDLKLPPQFITQIAQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDL 120
+DLKLP F+TQIAQSIQ+QL++FR+YEGQDMYT EKI+PIKLDLRVNHTLIKD FLWDL
Sbjct: 61 KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120
Query: 121 NNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEVMI 162
NN+ESDPEEFART C D+G+EDPEVGPAVAFAIREQLYE+ I
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAI 162
>sp|Q5U379|SNF5_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1-A OS=Danio rerio
GN=smarcb1a PE=2 SV=1
Length = 373
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +FA+ DL L P F+ IA +I+ Q+
Sbjct: 174 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQI 233
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + D ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 234 ESYPTDSILDEQMDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL- 291
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 292 GGEFVTTIAYSIRGQL 307
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE FA C+D+ + PA+A AIR+
Sbjct: 172 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQ 231
Query: 156 QL 157
Q+
Sbjct: 232 QI 233
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 21 DNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQ 80
D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+ Q
Sbjct: 247 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQ 306
Query: 81 LT 82
L+
Sbjct: 307 LS 308
>sp|Q6DFM1|SNF5_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Xenopus tropicalis
GN=smarcb1 PE=2 SV=1
Length = 378
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +FA+ DL L P F+ IA +I+ Q+
Sbjct: 179 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQI 238
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 239 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL- 296
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 297 GGEFVTTIAYSIRGQL 312
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 95 AEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIR 154
+E +VPI+LD+ ++ ++D F W++N PE FA C+D+ + PA+A AIR
Sbjct: 176 SEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIR 235
Query: 155 EQL 157
+Q+
Sbjct: 236 QQI 238
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 20 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 79
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 251 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 310
Query: 80 QLT 82
QL+
Sbjct: 311 QLS 313
>sp|O42467|SNF5_TETFL SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Tetraodon fluviatilis
GN=smarcb1 PE=3 SV=1
Length = 373
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E EGQ+ +DAFTWN ++ +FA+ DL L P F+ I +I+ Q+
Sbjct: 174 LVPIRLDMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIPSAIRQQI 233
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + T ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G +
Sbjct: 234 ESYPTDAILEEQTDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG-Q 291
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 292 GGEFVTTIAYSIRGQL 307
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 95 AEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIR 154
+E +VPI+LD+ + ++D F W++N PE FA C+D+ + PA+ AIR
Sbjct: 171 SEVLVPIRLDMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIPSAIR 230
Query: 155 EQL 157
+Q+
Sbjct: 231 QQI 233
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 21 DNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQ 80
D V I+L+I D F W+ S+ ++ FA + +L +F+T IA SI+ Q
Sbjct: 247 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGQGGEFVTTIAYSIRGQ 306
Query: 81 LT 82
L+
Sbjct: 307 LS 308
>sp|Q6GQ82|SNF5_XENLA SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Xenopus laevis
GN=smarcb1 PE=2 SV=1
Length = 378
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +FA+ DL L P F+ IA +I+ Q+
Sbjct: 179 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQI 238
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 239 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL- 296
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 297 GGEFVTTIAYSIRGQL 312
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE FA C+D+ + PA+A AIR+
Sbjct: 177 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQ 236
Query: 156 QL 157
Q+
Sbjct: 237 QI 238
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 20 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 79
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 251 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 310
Query: 80 QLT 82
QL+
Sbjct: 311 QLS 313
>sp|Q5BIN2|SNF5_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Bos taurus GN=SMARCB1
PE=2 SV=1
Length = 385
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL- 303
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 304 GGEFVTTIAYSIRGQL 319
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 156 QL 157
Q+
Sbjct: 244 QI 245
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 20 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 79
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 258 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 317
Query: 80 QLT 82
QL+
Sbjct: 318 QLS 320
>sp|Q9Z0H3|SNF5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Mus musculus
GN=Smarcb1 PE=1 SV=1
Length = 385
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL- 303
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 304 GGEFVTTIAYSIRGQL 319
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 156 QL 157
Q+
Sbjct: 244 QI 245
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 20 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 79
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 258 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 317
Query: 80 QLT 82
QL+
Sbjct: 318 QLS 320
>sp|Q12824|SNF5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Homo sapiens
GN=SMARCB1 PE=1 SV=2
Length = 385
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL- 303
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 304 GGEFVTTIAYSIRGQL 319
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 156 QL 157
Q+
Sbjct: 244 QI 245
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 20 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 79
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 258 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 317
Query: 80 QLT 82
QL+
Sbjct: 318 QLS 320
>sp|Q5ZK40|SNF5_CHICK SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Gallus gallus
GN=SMARCB1 PE=2 SV=1
Length = 386
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 81
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 187 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 246
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 247 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL- 304
Query: 142 DPEVGPAVAFAIREQL 157
E +A++IR QL
Sbjct: 305 GGEFVTTIAYSIRGQL 320
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 155
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 185 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 244
Query: 156 QL 157
Q+
Sbjct: 245 QI 246
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 20 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 79
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 259 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 318
Query: 80 QLT 82
QL+
Sbjct: 319 QLS 321
>sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNF5 PE=1
SV=3
Length = 905
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 12/151 (7%)
Query: 19 TADNLVPIRLDIETEGQRY--KDAFTWNPSDPDSEVVVFAKRTVRDLKLP----PQFITQ 72
T++ LVPIRL+ + + R+ +D WN +D ++ F +RD + Q I
Sbjct: 453 TSEQLVPIRLEFDQDRDRFFLRDTLLWNKNDKLIKIEDFVDDMLRDYRFEDATREQHIDT 512
Query: 73 IAQSIQTQLTEFRSYE----GQDMYTAEKI-VPIKLDLRVNHTLIKDHFLWDLNNYESDP 127
I QSIQ Q+ EF+ QD + + + IKLD+ V + D F WD++N ++ P
Sbjct: 513 ICQSIQEQIQEFQGNPYIELNQDRLGGDDLRIRIKLDIVVGQNQLIDQFEWDISNSDNCP 572
Query: 128 EEFARTFCNDMGIEDPEVGPAVAFAIREQLY 158
EEFA + C ++ + E A+A +IREQ++
Sbjct: 573 EEFAESMCQELELPG-EFVTAIAHSIREQVH 602
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 16 RMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQ 75
R+ D + I+LDI + D F W+ S+ D+ FA+ ++L+LP +F+T IA
Sbjct: 536 RLGGDDLRIRIKLDIVVGQNQLIDQFEWDISNSDNCPEEFAESMCQELELPGEFVTAIAH 595
Query: 76 SIQTQLTEFR 85
SI+ Q+ +
Sbjct: 596 SIREQVHMYH 605
>sp|Q754R8|SFH1_ASHGO Chromatin structure-remodeling complex subunit SFH1 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=SFH1 PE=3 SV=1
Length = 383
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 24/163 (14%)
Query: 5 ATSSSKAPVKFRMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLK 64
A SSS PV ++PIRL++E G + D FTWN +D + FA+ +DL
Sbjct: 146 AYSSSSQPV---------VIPIRLNLEHNGHKIIDFFTWNLNDHSLTLEQFAQIYCQDLD 196
Query: 65 LPPQFI--TQIAQSIQTQLTEFRSYEGQDMYTAEKIVP-----IKLDLRVNHTLIKDHFL 117
QI +I QL E+ + A +VP I L ++ L +D+F
Sbjct: 197 FAHNLSLQNQIVAAINDQLQEYETL-------ASVVVPDLHVIINLTCNLDSKLYEDNFE 249
Query: 118 WDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEV 160
W+LN+ PE+FA D+G+ E PA+A A+ E + ++
Sbjct: 250 WNLNDQTLSPEQFAELVVQDLGLT-REFMPAIAHALYESILKI 291
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 88 EGQDMYTAEK---IVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGI-EDP 143
EG Y++ ++PI+L+L N I D F W+LN++ E+FA+ +C D+ +
Sbjct: 142 EGAGAYSSSSQPVVIPIRLNLEHNGHKIIDFFTWNLNDHSLTLEQFAQIYCQDLDFAHNL 201
Query: 144 EVGPAVAFAIREQL--YEVM---IIPPL 166
+ + AI +QL YE + ++P L
Sbjct: 202 SLQNQIVAAINDQLQEYETLASVVVPDL 229
>sp|Q09699|SNF5_SCHPO SWI/SNF chromatin-remodeling complex subunit snf5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf5 PE=1 SV=1
Length = 632
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 38/172 (22%)
Query: 22 NLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLP---PQFITQIAQSIQ 78
+LVPIRL+I+ + + +D+FTWN D + FA++ D +P + I++SIQ
Sbjct: 140 DLVPIRLEIDADRYKLRDSFTWNLYDKCISLDQFAEQICIDYDIPLHNVHIVQNISKSIQ 199
Query: 79 TQLTEFRSYEGQDMY---------TAEKI-------------------------VPIKLD 104
Q+ ++ + Q T+E + + IKLD
Sbjct: 200 AQINDYEPRKAQSNLSFVSDVSSSTSETVYAHEPSDSLAKASKQQIPTVQNDLRILIKLD 259
Query: 105 LRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQ 156
+ + + D F W+L ES EEFA C D+G+ E AVA +IREQ
Sbjct: 260 ITIGRLNLIDQFEWNLFAPESSAEEFATVMCLDLGLSG-EFCTAVAHSIREQ 310
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 4 PATSSSKAPVKFRMPTADN--LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVR 61
P+ S +KA K ++PT N + I+LDI D F WN P+S FA
Sbjct: 233 PSDSLAKAS-KQQIPTVQNDLRILIKLDITIGRLNLIDQFEWNLFAPESSAEEFATVMCL 291
Query: 62 DLKLPPQFITQIAQSIQTQLTEFRSY 87
DL L +F T +A SI+ Q + Y
Sbjct: 292 DLGLSGEFCTAVAHSIREQCQMYIKY 317
>sp|Q6CSR7|SFH1_KLULA Chromatin structure-remodeling complex subunit SFH1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SFH1 PE=3
SV=1
Length = 442
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLP------PQFITQIAQS 76
+VPIRL++E G + D F WN +D FA +DL P TQI
Sbjct: 210 MVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILCQDLDFPVLSNPNNSPYTQIISM 269
Query: 77 IQTQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCN 136
I QL E+ + + + V I L ++ L D F W+LN+ PE+FA
Sbjct: 270 INEQLQEYETLAS--LQVPDLHVIINLTANLDSKLYDDTFEWNLNDDSLCPEQFAELVVQ 327
Query: 137 DMGIEDPEVGPAVAFAIREQLYEV 160
D+G++ E PA+A ++ E L +V
Sbjct: 328 DLGLQ-REFVPAIAHSLHESLLKV 350
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 24 VPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTE 83
V I L + + Y D F WN +D FA+ V+DL L +F+ IA S+ L +
Sbjct: 290 VIINLTANLDSKLYDDTFEWNLNDDSLCPEQFAELVVQDLGLQREFVPAIAHSLHESLLK 349
Query: 84 FR 85
+
Sbjct: 350 VK 351
>sp|Q6C9N2|SFH1_YARLI Chromatin structure-remodeling complex subunit SFH1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SFH1 PE=3 SV=1
Length = 441
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 29/152 (19%)
Query: 22 NLVPIRLDIET-EGQRYKDAFTWNPSDPDSEVVV---FAKRTVRDLKLPPQFITQIAQSI 77
L+PIR+ +E + R +D F W D D +++ FA T DL +P + Q++ I
Sbjct: 204 TLIPIRVAVENIDVFRVQDFFLW---DADEKILTPEQFATLTCADLDVPIGYSAQMSAQI 260
Query: 78 QTQLTEFRSYEGQDMYTAEKIVP--------IKLDLRVNHTLIKDHFLWDLNNYESDPEE 129
+ QL E YTA +P ++L + V+ + +D F WDL+ + P+E
Sbjct: 261 KKQLAE---------YTAAPALPKDVEVHVIVELAVTVDKIVYEDKFEWDLSGEYATPQE 311
Query: 130 FARTFCNDMGIEDPEVGPAVAFAIREQLYEVM 161
FART D+G+ E PA+ + QLYE +
Sbjct: 312 FARTVVQDLGLGQ-EFYPAITY----QLYETL 338
>sp|Q06168|SFH1_YEAST Chromatin structure-remodeling complex subunit SFH1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SFH1 PE=1 SV=1
Length = 426
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFI-TQIAQSIQTQL 81
++PI LDIE G KD F WN +D FA +DL + + TQIA I+ QL
Sbjct: 203 MIPITLDIEHMGHTIKDQFLWNYNDDSISPEEFASIYCKDLDMTSATLQTQIANIIKEQL 262
Query: 82 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 141
+ + ++ + ++ I L + +D+F W+LN+ PE FA + D+G+
Sbjct: 263 KDLENIAATEIMSDLHVI-INLTCNLQDRFFEDNFQWNLNDKSLTPERFATSIVQDLGLT 321
Query: 142 DPEVGPAVAFAIREQLYEV 160
E P ++ ++ E + ++
Sbjct: 322 -REFIPLISQSLHETILKI 339
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 24 VPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTE 83
V I L + + ++D F WN +D FA V+DL L +FI I+QS+
Sbjct: 279 VIINLTCNLQDRFFEDNFQWNLNDKSLTPERFATSIVQDLGLTREFIPLISQSLH----- 333
Query: 84 FRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWD-----LNNYESDPEEFARTFC 135
E I+ IK D H LI+DH D L+ D +E +C
Sbjct: 334 ------------ETILKIKKDWVDGH-LIQDHVPNDAAFGYLSGIRLDIDELGSNWC 377
>sp|Q9USM3|SFH1_SCHPO Chromatin structure-remodeling complex subunit sfh1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sfh1 PE=1 SV=1
Length = 418
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 15/148 (10%)
Query: 21 DNLVPIRLDIET-EGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQ-FITQIAQSIQ 78
D +PIRLDIE R KD F WN ++ VFA+ DL L + TQI+ SI+
Sbjct: 115 DVYIPIRLDIELPNNYRLKDTFLWNMNEQVMTPDVFAQILCADLDLSTNVYGTQISSSIR 174
Query: 79 TQLTEFRSY------EGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFAR 132
Q+ E+ +GQ+M +V + +++ D W+L + + PEEF+
Sbjct: 175 AQIEEYAPVAEVPMPKGQEM-----LVVFNIQVQLAQLSYNDQVEWNLTSPLT-PEEFSV 228
Query: 133 TFCNDMGIEDPEVGPAVAFAIREQLYEV 160
CND+G+ E P +A+AI E L ++
Sbjct: 229 LTCNDLGLSG-ESRPEIAYAIHECLLKL 255
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 67 PQFITQIAQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRV-NHTLIKDHFLWDLNNYES 125
P+F T+ T + E +D+Y +PI+LD+ + N+ +KD FLW++N
Sbjct: 91 PRFATKTRHIYVTDEQLKCAAEERDVY-----IPIRLDIELPNNYRLKDTFLWNMNEQVM 145
Query: 126 DPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYE 159
P+ FA+ C D+ + G ++ +IR Q+ E
Sbjct: 146 TPDVFAQILCADLDLSTNVYGTQISSSIRAQIEE 179
>sp|Q6FTV3|SFH1_CANGA Chromatin structure-remodeling complex subunit SFH1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SFH1 PE=3 SV=1
Length = 403
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 23 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQ--FITQIAQSIQTQ 80
L+PI L++E DAF WN +D V F DL L +QI SI Q
Sbjct: 177 LIPITLNVEHGNNTISDAFVWNVNDTSISVEDFVTTYCNDLGLYGNVSLHSQIVSSINEQ 236
Query: 81 LTEFRSYEGQDMYTAEKIVP-----IKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFC 135
+ E + A ++P + L + +D+F W+L++ PE+FA
Sbjct: 237 IQELEN-------VASLVIPDLEVVVNLTCTIQGKFFEDYFQWNLSDKSLSPEKFALIIV 289
Query: 136 NDMGIEDPEVGPAVAFAIREQLYEV 160
D+G+ E P +A ++ E L V
Sbjct: 290 ADLGLA-REFAPGIAHSLHEYLLHV 313
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 98 IVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGI-EDPEVGPAVAFAIREQ 156
++PI L++ + I D F+W++N+ E+F T+CND+G+ + + + +I EQ
Sbjct: 177 LIPITLNVEHGNNTISDAFVWNVNDTSISVEDFVTTYCNDLGLYGNVSLHSQIVSSINEQ 236
Query: 157 LYEV-----MIIPPL 166
+ E+ ++IP L
Sbjct: 237 IQELENVASLVIPDL 251
>sp|Q5M551|AROA_STRT2 3-phosphoshikimate 1-carboxyvinyltransferase OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=aroA
PE=3 SV=1
Length = 427
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 15 FRMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIA 74
+M + +L PI ++ + K A + D E V+ K R+ I Q
Sbjct: 147 LKMHGSKSLKPIHYELPVASAQVKSALIFAALQADGESVIIEKEKTRN--HTEDMIQQFG 204
Query: 75 QSIQTQLTEFRSYEGQDMYTAEKIVP 100
+Q + E R GQ E +VP
Sbjct: 205 GQLQVEGKEIRISGGQTFTAQEVVVP 230
>sp|B4JAL5|HOOK_DROGR Protein hook OS=Drosophila grimshawi GN=hk PE=3 SV=1
Length = 683
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 74 AQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFART 133
A+++Q+Q+TE R Q + EK + + +D + N + +EFAR
Sbjct: 183 AKALQSQMTEERDAMAQKCFETEKKMLLLIDEKTNLQ----------QELQKIQQEFARL 232
Query: 134 FCNDMGIEDPEVGPAVAFAIR 154
N +G + +GP A ++R
Sbjct: 233 EHNTIGDDGVSLGPIQAGSVR 253
>sp|P12397|MU1_REOVJ Outer capsid protein mu-1 OS=Reovirus type 2 (strain D5/Jones)
GN=M2 PE=1 SV=3
Length = 708
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 16 RMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQ 75
R+ D + P+R ++ G+ YK+ +W+P+ +VF K+P + T +Q
Sbjct: 366 RVVNLDQIAPMRFVLDLGGKSYKET-SWDPNGKKVGFIVFQS------KIPFELWTAASQ 418
Query: 76 SIQTQLTEFRSYEGQD-MYTAEKIV 99
Q + + +D +TA+ I+
Sbjct: 419 IGQATVVNYVQLYAEDSSFTAQSII 443
>sp|P11078|MU1_REOVD Outer capsid protein mu-1 OS=Reovirus type 3 (strain Dearing) GN=M2
PE=1 SV=4
Length = 708
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 16 RMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQ 75
R+ D + P+R ++ G+ YK+ +W+P+ +VF K+P + T +Q
Sbjct: 366 RVVNLDQIAPMRFVLDLGGKSYKET-SWDPNGKKVGFIVFQS------KIPFELWTAASQ 418
Query: 76 SIQTQLTEFRSYEGQD-MYTAEKIV 99
Q + + +D +TA+ I+
Sbjct: 419 IGQATVVNYVQLYAEDSSFTAQSII 443
>sp|P11077|MU1_REOVL Outer capsid protein mu-1 OS=Reovirus type 1 (strain Lang) GN=M2
PE=1 SV=4
Length = 708
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 16 RMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQ 75
R+ D + P+R ++ G+ YK+ +W+P+ +VF K+P + T +Q
Sbjct: 366 RVVNLDQIAPMRFVLDLGGKSYKET-SWDPNGKKVGFIVFQS------KIPFELWTAASQ 418
Query: 76 SIQTQLTEFRSYEGQD-MYTAEKIV 99
Q + + +D +TA+ I+
Sbjct: 419 IGQATVVNYVQLYAEDSSFTAQSII 443
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,319,073
Number of Sequences: 539616
Number of extensions: 2390760
Number of successful extensions: 5059
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4992
Number of HSP's gapped (non-prelim): 52
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)