Query 031052
Match_columns 166
No_of_seqs 143 out of 378
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:22:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k89_A PLA2P, PLAP, phospholip 92.9 0.28 9.5E-06 34.2 6.0 39 41-82 33-71 (80)
2 2lru_A Serine/threonine-protei 87.0 0.12 4E-06 37.4 0.0 45 115-162 49-93 (98)
3 2k89_A PLA2P, PLAP, phospholip 83.1 4.1 0.00014 28.2 6.4 55 98-158 17-71 (80)
4 2lru_A Serine/threonine-protei 80.5 0.38 1.3E-05 34.7 0.0 49 35-85 40-92 (98)
5 3pst_A Protein DOA1; protein d 74.1 6.1 0.00021 35.0 6.3 39 41-82 112-150 (425)
6 3l3f_X Protein DOA1, DOA1/UFD3 73.8 6.9 0.00024 33.9 6.4 38 41-81 49-86 (362)
7 2h7b_A Core-binding factor, ML 46.5 38 0.0013 24.5 5.1 42 45-86 38-84 (105)
8 3l3f_X Protein DOA1, DOA1/UFD3 43.6 40 0.0014 29.1 5.7 56 96-157 31-86 (362)
9 2p6v_A Transcription initiatio 35.1 28 0.00096 25.5 2.9 24 44-67 52-75 (114)
10 2qm4_A Non-homologous END-join 31.2 40 0.0014 27.3 3.6 111 24-138 25-141 (235)
11 3pst_A Protein DOA1; protein d 31.2 77 0.0026 27.9 5.7 57 96-158 94-150 (425)
12 2xc7_A Phosphorylated adapter 25.4 67 0.0023 23.0 3.5 29 124-152 5-33 (104)
13 2xc7_A Phosphorylated adapter 25.1 90 0.0031 22.3 4.2 30 50-79 6-36 (104)
14 4fxe_A Antitoxin RELB; toxin/a 24.3 1.1E+02 0.0038 20.5 4.3 11 131-141 16-26 (79)
15 1yx3_A Hypothetical protein DS 23.3 1.9E+02 0.0063 21.5 5.7 49 114-165 37-85 (132)
16 2p6v_A Transcription initiatio 23.3 45 0.0015 24.4 2.2 27 119-145 52-78 (114)
17 3or1_C Sulfite reductase GAMA; 23.0 1.2E+02 0.004 21.6 4.4 49 114-165 16-65 (105)
No 1
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=92.90 E-value=0.28 Score=34.21 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=34.2
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 031052 41 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 82 (166)
Q Consensus 41 F~WNlne~~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Qi~ 82 (166)
.=.|.+| .|..=|+.+|++.+||..|..+|++-|.+...
T Consensus 33 LpyN~~d---nP~~aAqkFi~~n~Lp~~yldqI~~FI~~N~~ 71 (80)
T 2k89_A 33 LPYNTSD---DPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTK 71 (80)
T ss_dssp EEECTTS---CHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHS
T ss_pred cCccCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 4468888 69999999999999999999999999988543
No 2
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=87.04 E-value=0.12 Score=37.43 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=39.0
Q ss_pred eeeecCCCCCCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhhc
Q 031052 115 HFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEVMI 162 (166)
Q Consensus 115 ~FeWdl~~~~~tPE~FA~~lc~DLgL~~~ef~~~Ia~sIreQl~~~~~ 162 (166)
+|..||.. .+|+.+|..+|..+.++ .+=.+.||..|++++..++.
T Consensus 49 eF~Fdle~--Dta~eVA~EMVe~~~l~-e~D~~~VaklI~~~v~~~~r 93 (98)
T 2lru_A 49 EFSFDLER--DVPEDVAQEMVESGYVC-EGDHKTMAKAIKDRVSLIKR 93 (98)
Confidence 68899974 69999999999999999 57788899999999876653
No 3
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=83.06 E-value=4.1 Score=28.19 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=40.3
Q ss_pred eeeeEEEEEeCCeeeeeeeeecCCCCCCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH
Q 031052 98 IVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLY 158 (166)
Q Consensus 98 lvpI~Ldi~~~~~~l~D~FeWdl~~~~~tPE~FA~~lc~DLgL~~~ef~~~Ia~sIreQl~ 158 (166)
-..+.+||.-|+..+ ..-.|.++ +|-.=|+.+|.+.+|| ..|..+||.-|.....
T Consensus 17 DyVFdVdi~dG~~~l--kLpyN~~d---nP~~aAqkFi~~n~Lp-~~yldqI~~FI~~N~~ 71 (80)
T 2k89_A 17 DYVFSIDVNEGGPSY--KLPYNTSD---DPWLTAYNFLQKNDLN-PMFLDQVAKFIIDNTK 71 (80)
T ss_dssp SEEEEECCSSSCSCE--EEEECTTS---CHHHHHHHHHHHHTCC-TTHHHHHHHHHHHHHS
T ss_pred cEEEEEEcCCCCccc--ccCccCCC---CHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC
Confidence 345555555444333 24456654 8999999999999999 6999999999988754
No 4
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=80.54 E-value=0.38 Score=34.72 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=40.6
Q ss_pred cEEEE----EEEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 031052 35 QRYKD----AFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 85 (166)
Q Consensus 35 ~klrD----~F~WNlne~~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Qi~ey~ 85 (166)
.|.|| .|..|+... |++.+|..||+.+.++..=...|+..|+.|+.-+.
T Consensus 40 gk~KeNeaIeF~Fdle~D--ta~eVA~EMVe~~~l~e~D~~~VaklI~~~v~~~~ 92 (98)
T 2lru_A 40 GKYKDNEAIEFSFDLERD--VPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIK 92 (98)
Confidence 35564 478888755 89999999999999999888899999999887643
No 5
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=74.08 E-value=6.1 Score=35.00 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=33.8
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 031052 41 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 82 (166)
Q Consensus 41 F~WNlne~~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Qi~ 82 (166)
.=.|.+| .|-.=|+.+|.+.+||..|.+||++-|.+-..
T Consensus 112 LpyN~~~---np~~~A~~Fi~~~~L~~~y~~qi~~FI~~N~~ 150 (425)
T 3pst_A 112 LPINVSD---NPYTAADNFLARYELPMSYRDQVVQLILKNTN 150 (425)
T ss_dssp EEECTTC---CHHHHHHHHHHHHTCCGGGHHHHHHHHHHHC-
T ss_pred CCccCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 5578888 59999999999999999999999999988443
No 6
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=73.81 E-value=6.9 Score=33.86 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=33.9
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 031052 41 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQL 81 (166)
Q Consensus 41 F~WNlne~~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Qi 81 (166)
.=.|.+| .|..=|+.+|++.+||..|.+||++-|.+-.
T Consensus 49 lpyN~~~---np~~~A~~F~~~~~l~~~y~~~i~~fi~~n~ 86 (362)
T 3l3f_X 49 LPINVSD---NPYTAADNFLARYELPMSYRDQVVQFILKNT 86 (362)
T ss_dssp EEECTTS---CHHHHHHHHHHHTTCCGGGHHHHHHHHHHHC
T ss_pred CCCcCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 5578888 5999999999999999999999999998843
No 7
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=46.51 E-value=38 Score=24.48 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHhhc
Q 031052 45 PSDPDSEVVVFAKRTVRDLKLPP-----QFITQIAQSIQTQLTEFRS 86 (166)
Q Consensus 45 lne~~itpE~FA~~lc~Dl~lp~-----~f~~~I~~sI~~Qi~ey~~ 86 (166)
+-+..||||+|...|=+.+..|+ .|...=.-+.|.++..-+.
T Consensus 38 Ll~~~i~~EeFt~~Lq~~lns~pqP~lvPFLK~sLp~Lr~~l~~~a~ 84 (105)
T 2h7b_A 38 LVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHAAR 84 (105)
T ss_dssp HHTSSCCHHHHHHHHHHHSSSSCCSSSHHHHHTTHHHHHHHHHHHGG
T ss_pred HHhCCCCHHHHHHHHHHHhcCCCCcchhHHHHHhHHHHHHHHHHHHH
Confidence 44678999999999999999986 4555555667776665444
No 8
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=43.61 E-value=40 Score=29.05 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=43.3
Q ss_pred ceeeeeEEEEEeCCeeeeeeeeecCCCCCCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHH
Q 031052 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQL 157 (166)
Q Consensus 96 e~lvpI~Ldi~~~~~~l~D~FeWdl~~~~~tPE~FA~~lc~DLgL~~~ef~~~Ia~sIreQl 157 (166)
++-..+.+||.-|+-.++ .-.|.++ .|-.=|+.+|.+.+|| ..|..+|+.-|.+..
T Consensus 31 ~yDyvf~vdi~~g~~~~k--lpyN~~~---np~~~A~~F~~~~~l~-~~y~~~i~~fi~~n~ 86 (362)
T 3l3f_X 31 TYDYVFDVDIEDGKPPLK--LPINVSD---NPYTAADNFLARYELP-MSYRDQVVQFILKNT 86 (362)
T ss_dssp EESEEEEECCSTTSCCEE--EEECTTS---CHHHHHHHHHHHTTCC-GGGHHHHHHHHHHHC
T ss_pred ccceEEEEEcCCCCcccc--CCCcCCC---CHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcC
Confidence 444667777776665454 5566654 8999999999999999 799999999988753
No 9
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=35.08 E-value=28 Score=25.51 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.8
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh
Q 031052 44 NPSDPDSEVVVFAKRTVRDLKLPP 67 (166)
Q Consensus 44 Nlne~~itpE~FA~~lc~Dl~lp~ 67 (166)
++-+..|++|+|...|=+.++.|+
T Consensus 52 ~Ll~~~i~~EeFt~~Lq~~lns~p 75 (114)
T 2p6v_A 52 NLLDGXIEAEDFTSRLYRELNSSP 75 (114)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCCC
T ss_pred HHHHccCCHHHHHHHHHHHHcCCC
Confidence 344678999999999999999976
No 10
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=31.21 E-value=40 Score=27.32 Aligned_cols=111 Identities=10% Similarity=0.195 Sum_probs=63.2
Q ss_pred eeeEEEeeeCCcEEEEEEEecCCCCCCCHHHHHHHHHHHc---CCCh-HHHHHHHHHHHHHHHHhhcccCCCc--CCCce
Q 031052 24 VPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDL---KLPP-QFITQIAQSIQTQLTEFRSYEGQDM--YTAEK 97 (166)
Q Consensus 24 VPIrLdle~~~~klrD~F~WNlne~~itpE~FA~~lc~Dl---~lp~-~f~~~I~~sI~~Qi~ey~~~~~~~~--~~~e~ 97 (166)
.=|+..+.-+||.+.=|=+=|+--..++.+.+-++.-++- .+|+ .+..++...++..+.+-..-..... ..+..
T Consensus 25 llvk~~ft~~sY~l~lTDL~~vW~E~l~~~~I~~Rak~lN~rl~i~~s~~~~~l~~ll~~aL~~~~~~~~~sls~~~~~~ 104 (235)
T 2qm4_A 25 LLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVAD 104 (235)
T ss_dssp EEEEEEEETTEEEEEEECSSCEEEEEECHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHCSCSCCCCEEEEEEETT
T ss_pred eEEEEEecCCcEEEEEEccchhceeecCHHHHHHHHHHhCcCCCCChhHhHHHHHHHHHHHHhcCCCCcceEEEecCCCC
Confidence 3456677777877652211122233455555555444333 4566 5666777777664421100000000 00122
Q ss_pred eeeeEEEEEeCCeeeeeeeeecCCCCCCCHHHHHHHHHHHc
Q 031052 98 IVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDM 138 (166)
Q Consensus 98 lvpI~Ldi~~~~~~l~D~FeWdl~~~~~tPE~FA~~lc~DL 138 (166)
.+.+++.+.+.+ + .|.|+++-...+|..|++.++..|
T Consensus 105 ~L~L~~~~~L~~--l--PlkW~fhL~~~~~s~l~~~LilPL 141 (235)
T 2qm4_A 105 ALILRVRSELSG--L--PFYWNFHCMLASPSLVSQHLIRPL 141 (235)
T ss_dssp EEEEEEEEEETT--E--EEEEEEEEEECCHHHHHHHTHHHH
T ss_pred cEEEEEEEECCC--C--CEEEEEEEeeCCHHHHHHHHHHHH
Confidence 355778888888 5 999999988999999998888654
No 11
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=31.17 E-value=77 Score=27.91 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=42.3
Q ss_pred ceeeeeEEEEEeCCeeeeeeeeecCCCCCCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH
Q 031052 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLY 158 (166)
Q Consensus 96 e~lvpI~Ldi~~~~~~l~D~FeWdl~~~~~tPE~FA~~lc~DLgL~~~ef~~~Ia~sIreQl~ 158 (166)
++-..+.+||.-|+-.++ .-.|.++ .|-.=|+.+|.+-+|| ..|..+|+.-|..-..
T Consensus 94 ~YDyvf~Vdi~~g~p~lk--LpyN~~~---np~~~A~~Fi~~~~L~-~~y~~qi~~FI~~N~~ 150 (425)
T 3pst_A 94 TYDYVFDVDIEDGKPPLK--LPINVSD---NPYTAADNFLARYELP-MSYRDQVVQLILKNTN 150 (425)
T ss_dssp EESEEEEECCSTTCCCEE--EEECTTC---CHHHHHHHHHHHHTCC-GGGHHHHHHHHHHHC-
T ss_pred ccceEEEEEcCCCCcccc--CCccCCC---CHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcCC
Confidence 334556666666554454 5566655 8999999999999999 7999999999887543
No 12
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=25.37 E-value=67 Score=22.95 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHcCCCCCchHHHHHHH
Q 031052 124 ESDPEEFARTFCNDMGIEDPEVGPAVAFA 152 (166)
Q Consensus 124 ~~tPE~FA~~lc~DLgL~~~ef~~~Ia~s 152 (166)
..||+.+|..+|..|+=|.......+.+.
T Consensus 5 ~~~~~~va~~ia~~L~E~k~~li~rvV~~ 33 (104)
T 2xc7_A 5 EDSQEKVADEISFRLQEPKKDLIARVVRI 33 (104)
T ss_dssp CCCHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 57899999999999998864444444433
No 13
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=25.09 E-value=90 Score=22.26 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHcCCCh-HHHHHHHHHHHH
Q 031052 50 SEVVVFAKRTVRDLKLPP-QFITQIAQSIQT 79 (166)
Q Consensus 50 itpE~FA~~lc~Dl~lp~-~f~~~I~~sI~~ 79 (166)
-||+.+|..+|.-|+=|. .....++..|..
T Consensus 6 ~~~~~va~~ia~~L~E~k~~li~rvV~~lG~ 36 (104)
T 2xc7_A 6 DSQEKVADEISFRLQEPKKDLIARVVRIIGN 36 (104)
T ss_dssp CCHHHHHHHHHHHTTCTTHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 489999999999999987 566677776655
No 14
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=24.28 E-value=1.1e+02 Score=20.45 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=7.7
Q ss_pred HHHHHHHcCCC
Q 031052 131 ARTFCNDMGIE 141 (166)
Q Consensus 131 A~~lc~DLgL~ 141 (166)
|..+|++|||+
T Consensus 16 a~~v~~~lGl~ 26 (79)
T 4fxe_A 16 SYAALEKMGVT 26 (79)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHhCCC
Confidence 56677777776
No 15
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=23.29 E-value=1.9e+02 Score=21.53 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=38.7
Q ss_pred eeeeecCCCCCCCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhhcCCC
Q 031052 114 DHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEVMIIPP 165 (166)
Q Consensus 114 D~FeWdl~~~~~tPE~FA~~lc~DLgL~~~ef~~~Ia~sIreQl~~~~~~~~ 165 (166)
|-|..|..+ +++| +|..++++.|+.-.+-.=.|-+-+|+--.+|..+|.
T Consensus 37 eGfL~d~~d--Wsee-vA~~lA~~EgIeLTe~HWeVI~flR~fY~e~~~sP~ 85 (132)
T 1yx3_A 37 EGYLSNLND--WVPG-VADVMAKQDNLELTEEHWDIINFLREYYEEYQIAPA 85 (132)
T ss_dssp TTEECCTTC--CCHH-HHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CcCcCChHh--CCHH-HHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHCCCCh
Confidence 368888764 6766 999999999986335555799999999999988885
No 16
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=23.28 E-value=45 Score=24.43 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=22.1
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCCCch
Q 031052 119 DLNNYESDPEEFARTFCNDMGIEDPEV 145 (166)
Q Consensus 119 dl~~~~~tPE~FA~~lc~DLgL~~~ef 145 (166)
+|.+..++||+|...+=..|..+.+.|
T Consensus 52 ~Ll~~~i~~EeFt~~Lq~~lns~pqP~ 78 (114)
T 2p6v_A 52 NLLDGXIEAEDFTSRLYRELNSSPQPY 78 (114)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCCCCTT
T ss_pred HHHHccCCHHHHHHHHHHHHcCCCCcc
Confidence 444568999999999999999985555
No 17
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=23.00 E-value=1.2e+02 Score=21.58 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=36.9
Q ss_pred eeeeecCCCCCCCHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHHHHhhcCCC
Q 031052 114 DHFLWDLNNYESDPEEFARTFCNDMGI-EDPEVGPAVAFAIREQLYEVMIIPP 165 (166)
Q Consensus 114 D~FeWdl~~~~~tPE~FA~~lc~DLgL-~~~ef~~~Ia~sIreQl~~~~~~~~ 165 (166)
|-|..|.+ .+++| .|+.+++.-|+ .-.+-+=.|-+-+|+--.+|..+|.
T Consensus 16 ~GfL~~~~--dW~ee-~A~~lA~~egI~eLTe~HW~vI~flR~yY~e~~~~P~ 65 (105)
T 3or1_C 16 DGFLNAFD--DWCPE-WVKYAKGSEGIGAGSADHQKIIDFLQDYYKANGIAPM 65 (105)
T ss_dssp TSCBSCGG--GCCHH-HHHHHGGGGTCSSCCHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCcCChH--hCCHH-HHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 34666654 36665 99999999998 3225556799999999999988885
Done!