Query 031052
Match_columns 166
No_of_seqs 143 out of 378
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 13:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031052.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031052hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1aisb2 a.74.1.2 (B:1206-1300) 73.5 1.2 8.8E-05 28.9 3.0 35 50-85 1-35 (95)
2 d1aisb2 a.74.1.2 (B:1206-1300) 73.3 1.4 9.9E-05 28.7 3.2 34 125-160 1-34 (95)
3 d1vola2 a.74.1.2 (A:208-316) T 61.0 3.1 0.00022 27.6 3.1 36 49-85 1-36 (109)
4 d1vola2 a.74.1.2 (A:208-316) T 60.7 3.2 0.00023 27.5 3.1 34 125-160 2-35 (109)
5 d1e0ea_ a.4.10.1 (A:) N-termin 41.7 13 0.00092 21.5 3.2 21 56-76 19-39 (46)
6 d2p6va1 a.277.1.1 (A:582-678) 39.5 11 0.00077 25.3 2.9 24 44-67 44-67 (97)
7 d1k6ya1 a.4.10.1 (A:1-46) N-te 37.1 14 0.001 21.3 2.9 21 56-76 19-39 (46)
8 d2pp4a1 a.277.1.1 (A:119-225) 29.8 17 0.0012 24.7 2.7 24 44-67 36-59 (107)
9 d1f46a_ d.129.4.1 (A:) Cell-di 29.2 14 0.001 25.5 2.3 34 54-87 98-137 (139)
10 d1by2a_ d.170.1.1 (A:) M2BP {H 24.7 51 0.0037 21.1 4.6 22 120-142 31-52 (116)
11 d2h9da1 a.130.1.1 (A:1-94) Sal 22.7 40 0.0029 21.3 3.6 27 57-83 62-93 (94)
12 d2gy9m1 a.156.1.1 (M:1-114) Ri 20.9 24 0.0018 23.5 2.2 31 54-84 27-62 (114)
13 d2uubm1 a.156.1.1 (M:2-126) Ri 20.1 42 0.0031 22.6 3.4 31 54-84 27-62 (125)
No 1
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=73.48 E-value=1.2 Score=28.92 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 031052 50 SEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 85 (166)
Q Consensus 50 itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Qi~ey~ 85 (166)
+.|+.|..++|..|+||..+.. .+..|-.++.+..
T Consensus 1 i~P~d~I~R~~~~L~L~~~i~~-~A~~i~~~~~~~~ 35 (95)
T d1aisb2 1 VKPTDYVNKFADELGLSEKVRR-RAIEILDEAYKRG 35 (95)
T ss_dssp CCGGGGHHHHHHHHTCCHHHHH-HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCcCHHHHH-HHHHHHHHHHHcC
Confidence 5799999999999999986543 3444545555543
No 2
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=73.33 E-value=1.4 Score=28.65 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHh
Q 031052 125 SDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEV 160 (166)
Q Consensus 125 ~tPE~FA~~lc~DLgL~~~ef~~~Ia~sIreQl~~~ 160 (166)
+.|++|-..+|..|||| +-....|..|..++.+.
T Consensus 1 i~P~d~I~R~~~~L~L~--~~i~~~A~~i~~~~~~~ 34 (95)
T d1aisb2 1 VKPTDYVNKFADELGLS--EKVRRRAIEILDEAYKR 34 (95)
T ss_dssp CCGGGGHHHHHHHHTCC--HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCcC--HHHHHHHHHHHHHHHHc
Confidence 47999999999999998 33455566666666654
No 3
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.96 E-value=3.1 Score=27.60 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 031052 49 DSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 85 (166)
Q Consensus 49 ~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Qi~ey~ 85 (166)
.+||..|..++|..|+||... ..-|..|-+++.+..
T Consensus 1 ~i~~~d~i~Rf~s~L~L~~~i-~~~A~~i~~~~~~~~ 36 (109)
T d1vola2 1 LITTGDFMSRFCSNLCLPKQV-QMAATHIARKAVELD 36 (109)
T ss_dssp CCCGGGTHHHHHHHHTCCHHH-HHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCcCHHH-HHHHHHHHHHHHHcC
Confidence 479999999999999999854 334555555555543
No 4
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.68 E-value=3.2 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHh
Q 031052 125 SDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEV 160 (166)
Q Consensus 125 ~tPE~FA~~lc~DLgL~~~ef~~~Ia~sIreQl~~~ 160 (166)
++|..|-..+|..|||| +-...-|..|...+.+.
T Consensus 2 i~~~d~i~Rf~s~L~L~--~~i~~~A~~i~~~~~~~ 35 (109)
T d1vola2 2 ITTGDFMSRFCSNLCLP--KQVQMAATHIARKAVEL 35 (109)
T ss_dssp CCGGGTHHHHHHHHTCC--HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCcC--HHHHHHHHHHHHHHHHc
Confidence 68999999999999998 34455666666666554
No 5
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=41.71 E-value=13 Score=21.54 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=17.7
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 031052 56 AKRTVRDLKLPPQFITQIAQS 76 (166)
Q Consensus 56 A~~lc~Dl~lp~~f~~~I~~s 76 (166)
+..|..++|||...+.+|+++
T Consensus 19 ~~~L~~~F~lp~~vAr~IV~~ 39 (46)
T d1e0ea_ 19 VKELSHKFGIPNLVARQIVNS 39 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 577999999999888888764
No 6
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.47 E-value=11 Score=25.35 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.8
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh
Q 031052 44 NPSDPDSEVVVFAKRTVRDLKLPP 67 (166)
Q Consensus 44 Nlne~~itpE~FA~~lc~Dl~lp~ 67 (166)
|+-+..++||+|...|=+.++.|+
T Consensus 44 ~L~~~~i~~EEF~~~Lq~~lns~p 67 (97)
T d2p6va1 44 NLLDGKIEAEDFTSRLYRELNSSP 67 (97)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCCC
T ss_pred HHHhCCcCHHHHHHHHHHHhcCCC
Confidence 345678999999999999999976
No 7
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=37.14 E-value=14 Score=21.33 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.5
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 031052 56 AKRTVRDLKLPPQFITQIAQS 76 (166)
Q Consensus 56 A~~lc~Dl~lp~~f~~~I~~s 76 (166)
+..|+..+|||..-+.+|+++
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~ 39 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVAS 39 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 578999999999888888754
No 8
>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.84 E-value=17 Score=24.68 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=20.8
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh
Q 031052 44 NPSDPDSEVVVFAKRTVRDLKLPP 67 (166)
Q Consensus 44 Nlne~~itpE~FA~~lc~Dl~lp~ 67 (166)
|+-+..+|+|+|...|=+.+..|+
T Consensus 36 ~L~~~~i~~EeF~~~Lq~~lns~p 59 (107)
T d2pp4a1 36 GLVNSTLTIEEFHSKLQEATNFPL 59 (107)
T ss_dssp HHHTTCSCHHHHHHHHHHHHCCCC
T ss_pred HHHhCCcCHHHHHHHHHHHhcCCC
Confidence 344678999999999999999976
No 9
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.18 E-value=14 Score=25.51 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCC---h---HHHHHHHHHHHHHHHHhhcc
Q 031052 54 VFAKRTVRDLKLP---P---QFITQIAQSIQTQLTEFRSY 87 (166)
Q Consensus 54 ~FA~~lc~Dl~lp---~---~f~~~I~~sI~~Qi~ey~~~ 87 (166)
.+|+.+|++||-- . .+-.+-.+.||+||.+|...
T Consensus 98 ~~a~~la~~l~g~l~D~~r~~lt~q~i~~~R~~i~e~e~~ 137 (139)
T d1f46a_ 98 QSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDA 137 (139)
T ss_dssp HHHHHHHHHHTCEEECTTSCBCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4689999999852 1 46677778999999999753
No 10
>d1by2a_ d.170.1.1 (A:) M2BP {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.65 E-value=51 Score=21.08 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCC
Q 031052 120 LNNYESDPEEFARTFCNDMGIED 142 (166)
Q Consensus 120 l~~~~~tPE~FA~~lc~DLgL~~ 142 (166)
+++...+.+ -|..+|++||+++
T Consensus 31 VC~~~w~~~-~A~VvCrqLG~~~ 52 (116)
T d1by2a_ 31 VCDNLWDLT-DASVVCRALGFEN 52 (116)
T ss_dssp EBCTTCCHH-HHHHHHHHTTCSC
T ss_pred EECCCcchh-hHHHHHHHhhhhh
Confidence 455555655 5999999999974
No 11
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.67 E-value=40 Score=21.28 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=17.7
Q ss_pred HHHHHHcCCChHHHHH-----HHHHHHHHHHH
Q 031052 57 KRTVRDLKLPPQFITQ-----IAQSIQTQLTE 83 (166)
Q Consensus 57 ~~lc~Dl~lp~~f~~~-----I~~sI~~Qi~e 83 (166)
...|.++||++.+... |..||+.|-..
T Consensus 62 ~~~a~~~gl~~~~i~~i~~~ii~~si~~Q~~~ 93 (94)
T d2h9da1 62 ARWAEENGLDAPFVEGLFAQIIHWYIAEQIKY 93 (94)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4668899999865544 34566655544
No 12
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=20.94 E-value=24 Score=23.50 Aligned_cols=31 Identities=6% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHh
Q 031052 54 VFAKRTVRDLKLPP-----QFITQIAQSIQTQLTEF 84 (166)
Q Consensus 54 ~FA~~lc~Dl~lp~-----~f~~~I~~sI~~Qi~ey 84 (166)
.+|..+|..+|+.+ .+-..=.+.|++.|+.|
T Consensus 27 ~~A~~Ic~~lgid~~~kv~~Lt~~qi~~l~~~i~~~ 62 (114)
T d2gy9m1 27 TRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKF 62 (114)
T ss_dssp HHHHHHHHHHTCCTTSBTTSCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCcccccCcccHHHHHHHHHHHHhc
Confidence 58999999999965 23333345566666554
No 13
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=20.13 E-value=42 Score=22.60 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHh
Q 031052 54 VFAKRTVRDLKLPP-----QFITQIAQSIQTQLTEF 84 (166)
Q Consensus 54 ~FA~~lc~Dl~lp~-----~f~~~I~~sI~~Qi~ey 84 (166)
.+|..+|..+|+.+ ++-..=.+.|++.|+.+
T Consensus 27 ~~A~~Ic~~lgId~~~k~~~Lt~~qi~~I~~~i~~~ 62 (125)
T d2uubm1 27 ARAKEALEKTGINPATRVKDLTEAEVVRLREYVENT 62 (125)
T ss_dssp HHHHHHHHTTTCCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccccccHHHHHHHHHHHhhh
Confidence 58999999999975 23333356666666654
Done!