BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031053
(166 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 318 bits (815), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 154/166 (92%), Positives = 158/166 (95%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+K
Sbjct: 168 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 318 bits (814), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 154/166 (92%), Positives = 158/166 (95%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+K
Sbjct: 168 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 153/166 (92%), Positives = 160/166 (96%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIP ETAL WF+TGVIPPAGTY+YWADPYTLFV EMALMGFAE
Sbjct: 109 MLGAVGAIAPEILGKAGLIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAE 168
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLGFEKYLGGSG+PAYPGGPLFNPLG GKDEKS+KD KLKEVK
Sbjct: 169 HRRFQDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVK 228
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 229 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSLKFH 274
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/166 (92%), Positives = 158/166 (95%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY+YWADPYTLFV EMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPPETALPWFQTGVIPPAGTYDYWADPYTLFVFEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK+LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKEVK
Sbjct: 168 HRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEVK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 314 bits (805), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 152/166 (91%), Positives = 159/166 (95%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIP ETAL WF+TGVIPPAGTY+YWADPYTLFV EMALMGFAE
Sbjct: 109 MLGAVGAIAPEILGKAGLIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAE 168
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDWA PGSMG+QYFLGFEKYLGGSG+PAYPGGPLFNPLG GKDEKS+KD KLKEVK
Sbjct: 169 HRRLQDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVK 228
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 229 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSLKFH 274
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/166 (90%), Positives = 158/166 (95%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG GAIAPEILGK GLIP ETAL WFQTGVIPPAGTY+YWADPYTLFVLEMALMGFAE
Sbjct: 110 MLGVAGAIAPEILGKLGLIPPETALPWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAE 169
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLGFEK+LGGSGDPAYPGGP+FNPLG GKDEKSMK+ KLKEVK
Sbjct: 170 HRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVK 229
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILG+F+QGLVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 230 NGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 275
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 149/166 (89%), Positives = 158/166 (95%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG GAIAPEILGK GLIP ETAL WFQTGVIPPAGTY+YWADPYTLFVLEMALMGFAE
Sbjct: 110 MLGVAGAIAPEILGKLGLIPPETALPWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAE 169
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLGFEK+LGGSGDPAYPGGP+FNPLG GKDE+SMK+ KLKEVK
Sbjct: 170 HRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVK 229
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILG+F+QGLVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 230 NGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 275
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 311 bits (796), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 150/166 (90%), Positives = 156/166 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 110 MLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 169
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK GGSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 170 HRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 229
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGPYQNLLDH+ADPVNNNVLTSLKFH
Sbjct: 230 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/166 (90%), Positives = 155/166 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGK GLIP ETAL WF+TGV PPAGTYNYWADPYTLFV EMALMGFAE
Sbjct: 108 MLGAVGAIAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWANPGSMG+QYFLG EKYLGGSGDPAYPGGPLFNPLG GKDEKS+KD KLKEVK
Sbjct: 168 HRRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF QG VTGVGP QNLLDHLADPVNNN++TSLKFH
Sbjct: 228 NGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFH 273
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 155/166 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEI G GLIP ETAL WF+TGVIPPAGTYNYWADPYTLFV EMALMGFAE
Sbjct: 108 MLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK+LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+K
Sbjct: 168 HRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/166 (89%), Positives = 155/166 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIPQETAL WF+TGV PPAGTYNYWAD YTLFV EMALMGFAE
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVK
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQ LVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 231 NGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH 276
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 308 bits (790), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 149/166 (89%), Positives = 155/166 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIPQETAL WF+TGV PPAGTYNYWAD YTLFV EMALMGFAE
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVK
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQ LVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 231 NGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH 276
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 307 bits (787), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 147/166 (88%), Positives = 155/166 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAE
Sbjct: 112 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAE 171
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDW NPGSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVK
Sbjct: 172 HRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVK 231
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSLKFH
Sbjct: 232 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKFH 277
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 154/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIPQETAL WF+TGV PPAGTYNYWAD YTLFV EMALMGFAE
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVK
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQ LVTGVGPYQNLLDHL DPV+NN+LTSLKFH
Sbjct: 231 NGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 154/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIPQETAL WF+TG IPPAGTYNYWAD YTLFV EMALMGFAE
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVK
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQ LVTGVGPYQNLLDHL DPV+NN+LTSLKFH
Sbjct: 231 NGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 155/166 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIPQETAL WF+TGV PPAGTYNYWAD YTLFV EMALMGFAE
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVK
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFV+ LVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 231 NGRLAMLAILGYFVRALVTGVGPYQNLLDHLADPVHNNILTSLKFH 276
>gi|37780998|gb|AAP35043.1| chlorophyll a/b binding protein, partial [Vitis vinifera]
Length = 166
Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 149/165 (90%), Positives = 154/165 (93%)
Query: 2 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEH 61
LGAVGAIAPEILGK GLIP ETAL WF+TGV PPAGTYNYWADPYTLFV EMALMGFAEH
Sbjct: 1 LGAVGAIAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFAEH 60
Query: 62 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 121
RRFQDWANPGSMG+QYFLG EKYLGGSGDPAYPGGPLFNPLG GKDEKS+KD KLKEVKN
Sbjct: 61 RRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKN 120
Query: 122 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
GRLAMLAILGYF QG VTGVGP QNLLDHLADPVNNN++TSLKFH
Sbjct: 121 GRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFH 165
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/166 (87%), Positives = 154/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAE
Sbjct: 392 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAE 451
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVK
Sbjct: 452 HRRLQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVK 511
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSLKFH
Sbjct: 512 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKFH 557
Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 145/164 (88%), Positives = 153/164 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAE
Sbjct: 112 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAE 171
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDW NPGSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVK
Sbjct: 172 HRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVK 231
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSLK
Sbjct: 232 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLK 275
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/166 (87%), Positives = 154/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAE
Sbjct: 408 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAE 467
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVK
Sbjct: 468 HRRLQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVK 527
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSLKFH
Sbjct: 528 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKFH 573
Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/165 (87%), Positives = 152/165 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAE
Sbjct: 112 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAE 171
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDW NPGSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVK
Sbjct: 172 HRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVK 231
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 165
NGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSL
Sbjct: 232 NGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLNL 276
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 304 bits (779), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 146/166 (87%), Positives = 157/166 (94%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGK GLIPQETAL WFQTGVIPPAGTYNYWADP+TLFVLEMALMGFAE
Sbjct: 121 MLGAVGAIAPEILGKLGLIPQETALPWFQTGVIPPAGTYNYWADPFTLFVLEMALMGFAE 180
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QD+ NPGSMG+QYFLG EK+LGGSG+PAYPGGPLFNPLG GKDEKSMK+ KLKEVK
Sbjct: 181 HRRLQDYRNPGSMGKQYFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVK 240
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADPV+NN LT++K H
Sbjct: 241 NGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVHNNFLTNMKLH 286
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 304 bits (779), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 153/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 153/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 153/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPPETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/166 (88%), Positives = 153/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY+YWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYSYWADNYTLFVLEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK GSG+PAYPGGP FNPLG GK+EKSMK+ KLKE+K
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 153/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 53 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 112
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 113 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 172
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 173 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 218
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 144/166 (86%), Positives = 157/166 (94%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGK GLIPQETAL WF+TGVIPPAGTY+YWADP+TLFVLEMALMGFAE
Sbjct: 123 MLGAVGAIAPEILGKLGLIPQETALPWFRTGVIPPAGTYDYWADPFTLFVLEMALMGFAE 182
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QD+ PGSM +QYFLGFEKYLGGSG+P+YPGGPLFNPLG GKDEKSMK+ KLKEVK
Sbjct: 183 HRRLQDYRYPGSMSKQYFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVK 242
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAI+GYF+QGLVTGVGP+QNLLDHLADPVNNN+LT+LK H
Sbjct: 243 NGRLAMLAIVGYFIQGLVTGVGPFQNLLDHLADPVNNNLLTNLKIH 288
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 301 bits (770), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 143/166 (86%), Positives = 153/166 (92%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIP ETAL WF+TGVIPPAGTY+YWADPYTLFV E+ALMGFAE
Sbjct: 109 MLGAVGAIAPEILGKAGLIPPETALPWFKTGVIPPAGTYDYWADPYTLFVFELALMGFAE 168
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQD+ PG + +QYFLGFEKY GSG+P YPGGPLFNPLG GKDEKS+KD KLKEVK
Sbjct: 169 HRRFQDFQKPGCLSKQYFLGFEKYFEGSGNPIYPGGPLFNPLGFGKDEKSLKDLKLKEVK 228
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQ LVTGVGPYQNLLDHL+DPVNNN+LTSLKFH
Sbjct: 229 NGRLAMLAILGYFVQALVTGVGPYQNLLDHLSDPVNNNILTSLKFH 274
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 301 bits (770), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 147/166 (88%), Positives = 152/166 (91%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLA PVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLAGPVNNNVLTSLKFH 273
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/166 (87%), Positives = 151/166 (90%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL QTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALPXXQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 168 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 227
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/166 (84%), Positives = 150/166 (90%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEI GK G+IP ETAL WF+TGVIPPAGTYNYWAD YTLFV MALMGFAE
Sbjct: 102 MLGAVGAIAPEIFGKMGIIPPETALPWFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAE 161
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK+L GSGDP+YPGGPLFNPLG GK EK M + KLKE+K
Sbjct: 162 HRRLQDWYNPGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIK 221
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 222 NGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 267
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 294 bits (753), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 143/164 (87%), Positives = 150/164 (91%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEI GK GLIP ETAL WFQTGVIPPAG+Y YWADPYTLFV EMALMGFAE
Sbjct: 34 MLGAAGAIAPEIFGKLGLIPAETALPWFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAE 93
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDW NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKSMK+ KLKE+K
Sbjct: 94 HRRFQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIK 153
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADPVNNNVLTSLK
Sbjct: 154 NGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLK 197
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/164 (87%), Positives = 149/164 (90%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEI GK GLIP ETAL WFQTGVIPPAG+Y YWADPYTLFV EMALMGFAE
Sbjct: 34 MLGAVGAIAPEIFGKLGLIPAETALPWFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAE 93
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK GSGDPAYPGGP FNPLG GKDEKSMK+ KLKE+K
Sbjct: 94 HRRLQDWYNPGSMGKQYFLGLEKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIK 153
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADPVNNNVLTSLK
Sbjct: 154 NGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLK 197
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 141/166 (84%), Positives = 150/166 (90%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEI GK G+IP ETAL WF+TGVIPPAGTYNYWAD YTLFV MALMGFAE
Sbjct: 44 MLGAVGAIAPEIFGKMGIIPPETALPWFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAE 103
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK+L GSGDP+YPGGPLFNPLG GK EK M + KLKE+K
Sbjct: 104 HRRLQDWYNPGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIK 163
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 164 NGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 209
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/164 (86%), Positives = 148/164 (90%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEI GK GLIP ETAL WFQTGVIPPAG+Y YWADPYTLFV EMALMGFAE
Sbjct: 34 MLGAVGAIAPEIFGKLGLIPAETALPWFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAE 93
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK GSGDPAYPGGP FNPLG GKDE SMK+ KLKE+K
Sbjct: 94 HRRLQDWYNPGSMGKQYFLGLEKGFAGSGDPAYPGGPFFNPLGFGKDETSMKELKLKEIK 153
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADPVNNNVLTSLK
Sbjct: 154 NGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLK 197
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 291 bits (744), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 141/164 (85%), Positives = 148/164 (90%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEI GK GLIP ETAL WFQTGVIPPAG+Y YWADPYTLFV EMALMGFAE
Sbjct: 34 MLGAAGAIAPEIFGKLGLIPAETALPWFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAE 93
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK GSGDPAYPGGP FNPLG GKDEKSMK+ KLKE+K
Sbjct: 94 HRRLQDWYNPGSMGKQYFLGLEKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIK 153
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADPV+NNVLTSLK
Sbjct: 154 NGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVSNNVLTSLK 197
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/166 (82%), Positives = 149/166 (89%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEI GK GLIPQETA+ WFQTGVIPP G Y+YWADPYTLFVLEMALMGFAE
Sbjct: 114 MLGAAGAIAPEIFGKIGLIPQETAIPWFQTGVIPPLGQYSYWADPYTLFVLEMALMGFAE 173
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QD+ PGSMG+QYFLGFEK LGGSGDPAYPGGPLFN LG G+DEKSMKD K+KEVK
Sbjct: 174 HRRAQDYYKPGSMGKQYFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVK 233
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLA+LGYF+Q + TGVGP+QNLLDHL+DP NNNVLT+LK H
Sbjct: 234 NGRLAMLAVLGYFIQAIFTGVGPFQNLLDHLSDPANNNVLTNLKIH 279
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 142/157 (90%), Positives = 147/157 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 37 MLGAVGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAE 96
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK LGGSGDPAYPGGP FNPLG GKDEKSMK+ KLKEVK
Sbjct: 97 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVK 156
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 157
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADP +N
Sbjct: 157 NGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPWHN 193
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/166 (80%), Positives = 146/166 (87%), Gaps = 1/166 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEI GK G+IPQETA+ WF+TGV PPAGTYNYWADPYTLF LEMALMGFAE
Sbjct: 114 MLGAAGAIAPEIFGKIGIIPQETAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAE 173
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QD+ PGSMG+QYFLGFEKYLGGSGDPAYPGG +FNP G GKDEKSM+ K+KEVK
Sbjct: 174 HRRAQDFYKPGSMGKQYFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEVK 232
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+Q TGVGP+QNLLDHLADP NN+LT+LK +
Sbjct: 233 NGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNLKVY 278
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/166 (79%), Positives = 146/166 (87%), Gaps = 1/166 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEI GK G+IPQ+TA+ WF+TGV PPAGTYNYWADPYTLF LEMALMGFAE
Sbjct: 114 MLGAAGAIAPEIFGKIGIIPQQTAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAE 173
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QD+ PGSMG+QYFLGFEKYLGGSGDPAYPGG +FNP G GKDEKSM+ K+KEVK
Sbjct: 174 HRRAQDYYKPGSMGKQYFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEVK 232
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYF+Q TGVGP+QNLLDHLADP NN+LT+LK +
Sbjct: 233 NGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNLKVY 278
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/167 (78%), Positives = 144/167 (86%), Gaps = 1/167 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+G VG IAPE LGK GL+P ETA+ WFQ G IPPAGTY YWADPYTLFV EMAL+GFAE
Sbjct: 102 MMGVVGMIAPEALGKVGLVPSETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAE 161
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEV 119
HRR QDW NPGSMG+QYFLG EKYLGGSGDPAYPGGP+FNPLG G K EK MK+ KLKE+
Sbjct: 162 HRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEI 221
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA LG +Q + TGVGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 222 KNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLKFH 268
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 131/167 (78%), Positives = 144/167 (86%), Gaps = 1/167 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+G VG IAPE LGK GL+P ETA+ WFQ G IPPAGTY YWADPYTLFV EMAL+GFAE
Sbjct: 103 MMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAE 162
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEV 119
HRR QDW NPGSMG+QYFLG EKYLGGSGDPAYPGGP+FNPLG G K EK MK+ KLKE+
Sbjct: 163 HRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA LG +Q + TGVGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 223 KNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLKFH 269
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 131/167 (78%), Positives = 144/167 (86%), Gaps = 1/167 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+G VG IAPE LGK GL+P ETA+ WFQ G IPPAGTY YWADPYTLFV EMAL+GFAE
Sbjct: 103 MMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAE 162
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEV 119
HRR QDW NPGSMG+QYFLG EKYLGGSGDPAYPGGP+FNPLG G K EK MK+ KLKE+
Sbjct: 163 HRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA LG +Q + TGVGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 223 KNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLKFH 269
>gi|149392118|gb|ABR25925.1| chloroplast chlorophyll a-b binding protein [Oryza sativa Indica
Group]
Length = 171
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 131/167 (78%), Positives = 145/167 (86%), Gaps = 1/167 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+G VG +APE+LGK GL+P ETA+ WFQTGVIPPAGTY YWADPYTLFV E+AL+GFAE
Sbjct: 5 MMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVFELALVGFAE 64
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEV 119
HRRFQDW PGSMG+QYFLG EKYL GSG+PAYPGGPLFNPLG G K E MK+ KLKE+
Sbjct: 65 HRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEI 124
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA LG+ VQ L TGVGP QNLLDHLADPV+NN+LTSLKFH
Sbjct: 125 KNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH 171
>gi|406362893|gb|AFS34654.1| chloroplast chlorophyll a-b binding protein, partial [Leymus
secalinus]
Length = 189
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 131/167 (78%), Positives = 144/167 (86%), Gaps = 1/167 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+G VG IAPE LGK GL+P ETA+ WFQ G IPPAGTY YWADPYTLFV EMAL+GFAE
Sbjct: 23 MMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAE 82
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEV 119
HRR QDW NPGSMG+QYFLG EKYLGGSGDPAYPGGP+FNPLG G K EK MK+ KLKE+
Sbjct: 83 HRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEI 142
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA LG +Q + TGVGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 143 KNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLKFH 189
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/167 (78%), Positives = 145/167 (86%), Gaps = 1/167 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+G VG +APE+LGK GL+P ETA+ WFQTGVIPPAGTY YWADPYTLFV E+AL+GFAE
Sbjct: 103 MMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVFELALVGFAE 162
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEV 119
HRRFQDW PGSMG+QYFLG EKYL GSG+PAYPGGPLFNPLG G K E MK+ KLKE+
Sbjct: 163 HRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA LG+ VQ L TGVGP QNLLDHLADPV+NN+LTSLKFH
Sbjct: 223 KNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH 269
>gi|149392115|gb|ABR25924.1| chloroplast chlorophyll a-b binding protein 8 [Oryza sativa Indica
Group]
Length = 191
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 131/167 (78%), Positives = 145/167 (86%), Gaps = 1/167 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+G VG +APE+LGK GL+P ETA+ WFQTGVIPPAGTY YWADPYTLFV E+AL+GFAE
Sbjct: 25 MMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVFELALVGFAE 84
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEV 119
HRRFQDW PGSMG+QYFLG EKYL GSG+PAYPGGPLFNPLG G K E MK+ KLKE+
Sbjct: 85 HRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEI 144
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA LG+ VQ L TGVGP QNLLDHLADPV+NN+LTSLKFH
Sbjct: 145 KNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH 191
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 274 bits (701), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 128/166 (77%), Positives = 149/166 (89%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPE+LG+ GLIPQETA+ WFQ+GVIPP G Y+YWADPYTLFVLEMALMGFAE
Sbjct: 59 MLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAE 118
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QD+ PGSMG+QYFLG EK+LGGSG+PAYPGGP+FN LG GK+EK +++ K+KEVK
Sbjct: 119 HRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVK 178
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAM+A+LGYF Q + TGVGP+QNLLDHLADPV+NNVLT+LK H
Sbjct: 179 NGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNLKIH 224
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 128/166 (77%), Positives = 149/166 (89%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPE+LG+ GLIPQETA+ WFQ+GVIPP G Y+YWADPYTLFVLEMALMGFAE
Sbjct: 59 MLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAE 118
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QD+ PGSMG+QYFLG EK+LGGSG+PAYPGGP+FN LG GK+EK +++ K+KEVK
Sbjct: 119 HRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVK 178
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAM+A+LGYF Q + TGVGP+QNLLDHLADPV+NNVLT+LK H
Sbjct: 179 NGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNLKIH 224
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 128/166 (77%), Positives = 149/166 (89%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPE+LG+ GLIPQETA+ WFQ+GVIPP G Y+YWADPYTLFVLEMALMGFAE
Sbjct: 77 MLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAE 136
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QD+ PGSMG+QYFLG EK+LGGSG+PAYPGGP+FN LG GK+EK +++ K+KEVK
Sbjct: 137 HRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVK 196
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAM+A+LGYF Q + TGVGP+QNLLDHLADPV+NNVLT+LK H
Sbjct: 197 NGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNLKIH 242
>gi|149242542|pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/152 (88%), Positives = 139/152 (91%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 14 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 73
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 74 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 133
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 152
NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLA
Sbjct: 134 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>gi|226496924|ref|NP_001148598.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|195620680|gb|ACG32170.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 151
Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/150 (84%), Positives = 136/150 (90%)
Query: 17 GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 76
G+IP ETAL WF+TGVIPPAGTYNYWAD YTLFV MALMGFAEHRR QDW NPGSMG+Q
Sbjct: 2 GIIPPETALPWFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQ 61
Query: 77 YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG 136
YFLG EK+L GSGDP+YPGGPLFNPLG GK EK M + KLKE+KNGRLAMLAILGYF+QG
Sbjct: 62 YFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQG 121
Query: 137 LVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
LVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 122 LVTGVGPFQNLLDHLADPVNNNVLTSLKFH 151
>gi|303324980|pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/146 (89%), Positives = 136/146 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 27 MLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 86
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK GGSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVK
Sbjct: 87 HRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 146
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQN 146
NGRLAMLAILGYF+QGLVTGVGPYQN
Sbjct: 147 NGRLAMLAILGYFIQGLVTGVGPYQN 172
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/166 (77%), Positives = 150/166 (90%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILG+ GLIPQETA+ WFQ+GVIPP G Y+YWADPYTLFVLE+ALMGFAE
Sbjct: 62 MLGAAGAIAPEILGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLELALMGFAE 121
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
HRR QD+ PGSMG+QYFLG EK+LGGSG+PAYPGGP+FN LG GK+EK +K+ KLKE+K
Sbjct: 122 HRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELKELKLKEIK 181
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAM+A+LGYF+Q + TGVGP+QNLLDHLADPV+NNVLT+LK H
Sbjct: 182 NGRLAMMAVLGYFIQAIFTGVGPFQNLLDHLADPVHNNVLTNLKIH 227
>gi|361067651|gb|AEW08137.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160502|gb|AFG62791.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160504|gb|AFG62792.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160506|gb|AFG62793.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160508|gb|AFG62794.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
Length = 132
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/131 (87%), Positives = 124/131 (94%)
Query: 36 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 95
AGTYNYWADP+TLFVLEMALMGFAEHRR QD+ NPGSMG+QYFLG EKYLGGSG+PAYPG
Sbjct: 1 AGTYNYWADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEKYLGGSGNPAYPG 60
Query: 96 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
GPLFNPLG GKDEKSMK+ KLKEVKNGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADP
Sbjct: 61 GPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPF 120
Query: 156 NNNVLTSLKFH 166
NNN+LT+LK H
Sbjct: 121 NNNILTNLKLH 131
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/164 (67%), Positives = 132/164 (80%), Gaps = 1/164 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFA 59
MLGA G IAPEILG AGLIP++T + W+++GVIPPAG+Y+ YWADPYT+F +E+ M FA
Sbjct: 100 MLGAAGCIAPEILGAAGLIPEKTNIVWYESGVIPPAGSYDGYWADPYTIFFIEIVAMQFA 159
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
E RR QD+ PGSMG+QYFLG EK GSGDPAYPGGP FN LGK E +MK+ KLKE+
Sbjct: 160 ELRRLQDFRYPGSMGKQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEI 219
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA+LGY Q +T GP+QNLLDHLADPVNNN+LT+
Sbjct: 220 KNGRLAMLAMLGYGAQATLTREGPFQNLLDHLADPVNNNILTNF 263
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/163 (66%), Positives = 129/163 (79%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G +APEILGK GLIP ET L WF+TGVIP G Y+YWA P LF +E+ LM FAE
Sbjct: 131 MLGMAGMVAPEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQFAE 190
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD+ +PGS +QYFLG E++ GGSGDP+YPGG +FN LG GKDEKSM D KLKE+K
Sbjct: 191 LRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELK 250
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAM+A LG+F+Q + TG GP+QNL DHLADP NNN+LT+
Sbjct: 251 NGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 293
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/163 (66%), Positives = 129/163 (79%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G +APEILGK GLIP ET L WF+TGVIP G Y+YWA P LF +E+ LM FAE
Sbjct: 109 MLGMAGMVAPEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQFAE 168
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD+ +PGS +QYFLG E++ GGSGDP+YPGG +FN LG GKDEKSM D KLKE+K
Sbjct: 169 LRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELK 228
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAM+A LG+F+Q + TG GP+QNL DHLADP NNN+LT+
Sbjct: 229 NGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 271
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 130/164 (79%), Gaps = 1/164 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFA 59
MLGA G IAPE+LG AGLIP T + WF++GVIPPAG+YN YWADPYT+F +E+ M FA
Sbjct: 99 MLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFA 158
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
E RR QD+ PGSMG+QYFLG E GSGD AYPGGP FN LGK E +MK+ KLKE+
Sbjct: 159 ELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEI 218
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA+LGY Q ++TG GP+QNL++HLADPVNNN+LT+
Sbjct: 219 KNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNNILTNF 262
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 130/164 (79%), Gaps = 1/164 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFA 59
MLGA G IAPE+LG AGLIP T + WF++GVIPPAG+YN YWADPYT+F +E+ M FA
Sbjct: 99 MLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFA 158
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
E RR QD+ PGSMG+QYFLG E GSGD AYPGGP FN LGK E +MK+ KLKE+
Sbjct: 159 ELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEI 218
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA+LGY Q ++TG GP+QNL++HLADPVNNN+LT+
Sbjct: 219 KNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNNILTNF 262
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/164 (65%), Positives = 130/164 (79%), Gaps = 1/164 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFA 59
MLGA G IAPE+LG AGLIP T + WF++GVIPPAG+Y+ YWADPYT+F +E+ M FA
Sbjct: 86 MLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYDGYWADPYTIFFVEIVAMQFA 145
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
E RR QD+ PGSMG+QYFLG E GSGD AYPGGP FN LGK E +MK+ KLKE+
Sbjct: 146 ELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEI 205
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA+LGY Q ++TG GP+QNL++HLADPVNNN+LT+
Sbjct: 206 KNGRLAMLAMLGYGAQAVLTGKGPFQNLVEHLADPVNNNILTNF 249
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 102/164 (62%), Positives = 122/164 (74%), Gaps = 1/164 (0%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTY-NYWADPYTLFVLEMALMGFA 59
MLGA G IAPEILGKAG+IP ETA+ WF+TGVIPPAG Y ++WADP+TLF +E+ + FA
Sbjct: 117 MLGAAGCIAPEILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFTLFFIEVVAIQFA 176
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
E +R QD+ NPGS RQYFLG E GS +PAYPGGP FN GK E MK KL E+
Sbjct: 177 ELKRLQDYKNPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEI 236
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA+ GY Q ++TG GP+ NLL HLADP N++T+L
Sbjct: 237 KNGRLAMLAMFGYGAQAVITGDGPFDNLLAHLADPTGANLITNL 280
>gi|125656346|gb|ABN48563.1| chloroplast PSI type III chlorophyll a/b-binding protein [Brassica
juncea]
Length = 110
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/110 (89%), Positives = 101/110 (91%)
Query: 57 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 116
GFAEHRR QDW NPGSMG+QYFLG EK GSG+PAYPGGP FNPLG GKDEKSMK+ KL
Sbjct: 1 GFAEHRRLQDWYNPGSMGKQYFLGLEKGFAGSGNPAYPGGPFFNPLGFGKDEKSMKELKL 60
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 61 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 110
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 124/165 (75%), Gaps = 4/165 (2%)
Query: 1 MLGAVGAIAPEILGKAGLIPQE-TALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGF 58
MLGA G IAPEIL AG+IPQ + WF++GVIPPAG Y+ YW DPY+LF +E+ L+ F
Sbjct: 79 MLGAAGCIAPEILATAGVIPQTPDEVIWFKSGVIPPAGVYDKYWLDPYSLFFIEVILVQF 138
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
AE RR+QD+ NPGS G+QYFLG E+ L GSGDP+YPGG FN LGK + +K+ K KE
Sbjct: 139 AELRRWQDFRNPGSQGKQYFLGLEEVLKGSGDPSYPGGQFFNLFNLGKSD--LKELKTKE 196
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAMLA+ GY Q ++T GP++NL DHL+DP +N+LT+
Sbjct: 197 LKNGRLAMLAVFGYGAQAVITAEGPFKNLTDHLSDPTGHNILTNF 241
>gi|296090224|emb|CBI40043.3| unnamed protein product [Vitis vinifera]
Length = 209
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/104 (90%), Positives = 98/104 (94%)
Query: 63 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 122
RFQDWANPGSMG+QYFLG EKYLGGSGDPAYPGGPLFNPLG GKDEKS+KD KLKEVKNG
Sbjct: 105 RFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNG 164
Query: 123 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
RLAMLAILGYF QG VTGVGP QNLLDHLADPVNNN++TSLKFH
Sbjct: 165 RLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFH 208
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 118/165 (71%), Gaps = 2/165 (1%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALA-WFQTGVIPPAGTYN-YWADPYTLFVLEMALMGF 58
MLG G +APE+L G IP A WF++GVIPPAG Y YW D YTLF +E +M F
Sbjct: 106 MLGIAGFLAPEVLATIGAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNF 165
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
AE +R+QD+ +PGS G+QYFLG E GGSG+PAYPGG FN L LGK ++MK + E
Sbjct: 166 AELKRWQDYQSPGSQGKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNE 225
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
++NGRLAM+A LG F Q ++T GP+ NLLDHLADP++NNVL +L
Sbjct: 226 IRNGRLAMIACLGCFGQAVMTTKGPFANLLDHLADPISNNVLGNL 270
>gi|357139429|ref|XP_003571284.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Brachypodium distachyon]
Length = 115
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/115 (76%), Positives = 101/115 (87%), Gaps = 1/115 (0%)
Query: 53 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSM 111
MAL+GFAEHRR QDW NPGSMG+QYFLG EK+LGGSGDPAYPGGP+FNPLG G K +K +
Sbjct: 1 MALIGFAEHRRLQDWYNPGSMGKQYFLGLEKFLGGSGDPAYPGGPIFNPLGFGTKSDKEL 60
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+ KLKE+KNGRLAMLA LG +Q + TGVGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 61 AELKLKEIKNGRLAMLAFLGMSIQAIFTGVGPFQNLLDHLSDPVNNNILTSLKFH 115
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 89/164 (54%), Positives = 121/164 (73%), Gaps = 3/164 (1%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G +APE+LG G+IPQET L W++ G+IP GTY+YWA+P+T+F + ALM FAE
Sbjct: 113 MLGVAGMVAPEVLGGLGIIPQETGLVWYKAGMIPAQGTYDYWANPFTIFWINAALMNFAE 172
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR QD+ NPGSMG+Q +G+EK LGGSG+PAYPGG FN +G GK + M ++KE+K
Sbjct: 173 LRRAQDYWNPGSMGKQELIGWEKMLGGSGEPAYPGG-FFNIMGQGKSD--MAKMRVKEIK 229
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAM+A Q ++TG GP +NL+DH++DP +N+L + +
Sbjct: 230 NGRLAMMACFACGAQAVMTGEGPVKNLIDHVSDPFGHNLLVNFQ 273
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 116/163 (71%), Gaps = 2/163 (1%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G +APEILG+AGLIP+ T L WF +G IPP GT++YWA+P T+F + M +M FAE
Sbjct: 117 MLGVAGIVAPEILGQAGLIPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAE 176
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
+R QD+ PGS Q +G+EK GSG+PAYPGG FN GLGKD+ M + KE+K
Sbjct: 177 IKRGQDYWYPGSQAEQPLMGWEKGFAGSGNPAYPGGKYFNFAGLGKDD--MAKMQKKEIK 234
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAM+A LG VQ +VTG GP++N+ DH+ADP N+L +
Sbjct: 235 NGRLAMMAFLGCMVQAVVTGEGPWKNICDHVADPFGANMLANF 277
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 112/163 (68%), Gaps = 2/163 (1%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G +APEILG G+IP+ T L WF +G IPP GT++YWA+P T+F + M +M FAE
Sbjct: 124 MLGVAGIVAPEILGGMGVIPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAE 183
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
+R QD+ PGS LG+EK GGSG+P YPGG FNP LGKD+ M + KEVK
Sbjct: 184 IKRGQDYWFPGSQAETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKDD--MASMQKKEVK 241
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAM+A LG VQ VTG GP++N+ DH+ADP N+L +
Sbjct: 242 NGRLAMMAFLGCMVQAAVTGEGPWKNICDHVADPFGANMLANF 284
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/164 (56%), Positives = 113/164 (68%), Gaps = 3/164 (1%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G +APE+LG G+IPQET L WF+ G+IP GTY+YWA P+T+F + LM AE
Sbjct: 104 MLGVAGMVAPEVLGGMGIIPQETGLVWFKAGMIPAQGTYDYWASPFTIFWINAFLMNIAE 163
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR QD+ NPGSMG+Q F G EK LGGSGDPAYPGG FN + G EK M K KE+K
Sbjct: 164 LRRAQDYWNPGSMGKQDFAGLEKMLGGSGDPAYPGG-FFNFMKQG--EKDMAAMKTKEIK 220
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAM+A G Q +TG GP +NL+DH+ DP +N+L +
Sbjct: 221 NGRLAMMACFGCGAQACMTGEGPVKNLVDHVIDPFGHNLLVNFS 264
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 112/160 (70%), Gaps = 2/160 (1%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G +APE+LG G+IP +T L WF++G IPP GT++YWADP T+F + M LM FAE
Sbjct: 140 MLGVAGVVAPEVLGGMGIIPADTGLVWFKSGAIPPQGTFDYWADPTTIFWVNMVLMNFAE 199
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
+R QD+ PGS G +G+EK GSG PAYPGG FN LGK + M + KE+K
Sbjct: 200 VKRGQDYWYPGSQGETPLMGWEKGFAGSGAPAYPGGKYFNFANLGKTD--MAKMQKKEIK 257
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
NGRLAM+A LG VQ + TG GP++N++DH++DP NN+L
Sbjct: 258 NGRLAMMAFLGIAVQAVATGEGPFKNIVDHISDPFANNML 297
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 117/175 (66%), Gaps = 12/175 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG---------VIPPAGT--YNYWADPYTLF 49
MLGA GA++PE+LGKAG+IP+ET L WFQ G +P G + YW D YTL
Sbjct: 174 MLGAAGALSPEVLGKAGVIPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYTLL 233
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDE 108
+ MGFAE RR+Q++ PGS+ +Q+FLG EK S PAYPGG FN GLG KDE
Sbjct: 234 FTMLVAMGFAETRRWQEYKEPGSVQKQFFLGLEKLTPPSQQPAYPGGGFFNFAGLGAKDE 293
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K M + K+KE++NGRLAMLA LG+ VQ VT VGP+QNLLDH+ P N+L+ L
Sbjct: 294 KQMFELKVKEIRNGRLAMLAFLGFMVQAEVTHVGPFQNLLDHINSPGAQNLLSRL 348
>gi|359754921|gb|AEV59650.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 201
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 84/92 (91%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP+ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 110 MLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 169
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA 92
HRR QDW NPGSMG+QYFLG EK LGGSG+PA
Sbjct: 170 HRRLQDWYNPGSMGKQYFLGLEKGLGGSGEPA 201
>gi|359754927|gb|AEV59653.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis campestris subsp. johannensis]
Length = 197
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 84/92 (91%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP+ETAL WFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 106 MLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA 92
HR QDW NPGSMG+QYFLG EK LGGSG+PA
Sbjct: 166 HRXLQDWYNPGSMGKQYFLGLEKGLGGSGEPA 197
>gi|357495585|ref|XP_003618081.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519416|gb|AET01040.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 94
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/94 (85%), Positives = 86/94 (91%)
Query: 73 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 132
MG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+KD KLKEVKNGRLAMLAILGY
Sbjct: 1 MGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 60
Query: 133 FVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
FVQ LVT VGPYQN L+HLADP NNN+LTSLKFH
Sbjct: 61 FVQALVTRVGPYQNFLNHLADPSNNNILTSLKFH 94
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 110/163 (67%), Gaps = 5/163 (3%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG GA APE + G IP TA+ WF+ G+IP G+Y++WA P LF + + +M F E
Sbjct: 120 MLGVAGATAPETM--KGFIPDSTAVVWFKNGIIPAQGSYDFWAPPTALFWVMVCMMNFVE 177
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
R ++ANPG +Q G EK +GG+G+PAYPGG FNP+G+GK++ M K+KE+K
Sbjct: 178 INRLTEYANPGFRTKQSLAGLEKGMGGTGNPAYPGGS-FNPMGMGKND--MDAMKVKEIK 234
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAM+A G VQ ++TG GP +NL DH+ DP +N+LT+
Sbjct: 235 NGRLAMMAFFGIMVQAIITGEGPVKNLTDHVTDPFAHNLLTNF 277
>gi|359754917|gb|AEV59648.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis arctobia]
Length = 198
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/89 (88%), Positives = 81/89 (91%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP+ETAL WFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 110 MLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 169
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSG 89
HR QDW NPGSMG+QYFLG EK LGGSG
Sbjct: 170 HRXLQDWYNPGSMGKQYFLGLEKGLGGSG 198
>gi|40455722|gb|AAR85970.1| type III chlorophyll a/b-binding protein [Nicotiana tabacum]
Length = 85
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 80/85 (94%)
Query: 82 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 141
EK LGGSGDPAYPGGP FNPLG GKDEKSMKD KLKEVKNGRLAMLAILGYF+QGLVTGV
Sbjct: 1 EKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGYFIQGLVTGV 60
Query: 142 GPYQNLLDHLADPVNNNVLTSLKFH 166
GPYQNLLDHLADPVNNN+LT+ KFH
Sbjct: 61 GPYQNLLDHLADPVNNNILTNFKFH 85
>gi|359754919|gb|AEV59649.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis maydelliana]
Length = 186
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 78/89 (87%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP+ETAL WFQTGVIPPAGTYNYWAD YTLFV EMALMG AE
Sbjct: 98 MLGAXGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVXEMALMGXAE 157
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSG 89
HR QDW NPGSMG+Q FLG EK LGGSG
Sbjct: 158 HRXLQDWXNPGSMGKQXFLGLEKGLGGSG 186
>gi|159138869|gb|ABW89437.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 128
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 78/90 (86%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEI GK GLIP ETAL WF+TGVIPPAGTY+YWADP+TLFV EMALMGFAE
Sbjct: 39 MLGAAGAIAPEIFGKLGLIPAETALPWFKTGVIPPAGTYDYWADPFTLFVFEMALMGFAE 98
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGD 90
HRR QDW NPGSMG+QYFLG EK GSGD
Sbjct: 99 HRRLQDWYNPGSMGKQYFLGLEKGFAGSGD 128
>gi|159138839|gb|ABW89422.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138841|gb|ABW89423.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138843|gb|ABW89424.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138845|gb|ABW89425.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138847|gb|ABW89426.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138849|gb|ABW89427.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138851|gb|ABW89428.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138853|gb|ABW89429.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138855|gb|ABW89430.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138857|gb|ABW89431.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138859|gb|ABW89432.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138861|gb|ABW89433.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138863|gb|ABW89434.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138865|gb|ABW89435.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138867|gb|ABW89436.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138871|gb|ABW89438.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138873|gb|ABW89439.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138875|gb|ABW89440.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 128
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 78/90 (86%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEI GK GLIP ETAL WF+TGVIPPAGTY+YWADP+TLFV EMALMGFAE
Sbjct: 39 MLGAAGAIAPEIFGKLGLIPAETALPWFKTGVIPPAGTYDYWADPFTLFVFEMALMGFAE 98
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGD 90
HRR QDW NPGSMG+QYFLG EK GSGD
Sbjct: 99 HRRLQDWYNPGSMGKQYFLGLEKGFAGSGD 128
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT-YNYWADPYTLFVLEMALMGFA 59
MLGA G +APE L +IP+ T L WF+TG +P A ++Y LF ++M +MG A
Sbjct: 58 MLGAAGCLAPEYLAHEKVIPKATGLLWFKTGFLPQASAGFDYGLPLGVLFAVQMVMMGVA 117
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGS--GDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
E R ++ PGS+ LG EK + + G AYPGG +FNPLGLG+ +M++ +
Sbjct: 118 EGLRGAEYIAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQA 177
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
E+++GRLAMLA LGY Q +VTG GPY N HL +P NNVL+ L
Sbjct: 178 EIRHGRLAMLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLSLL 223
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 104/165 (63%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G +A +++ +G+ WF+ G T +A+ LF +++ LMGFAE
Sbjct: 104 MAGVAGILATDLIRVSGI---NNLPVWFEAG-----ATKFDFANTTALFFVQLLLMGFAE 155
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D+ NPGS + FLG E L GS P YPGGPLFNPLGL KD ++ + KLKE+
Sbjct: 156 TKRYMDFINPGSQAEEGTFLGIEAALAGS-QPGYPGGPLFNPLGLAKDIENADEAKLKEI 214
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAM+A+LG+ VQ VT VGP NLL HL+DP N N++ +L
Sbjct: 215 KNGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLS 259
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 103/165 (62%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G +A + + +G+ WF+ G T +A+ LF +++ LMGFAE
Sbjct: 104 MAGVAGILATDFIRVSGI---NNLPVWFEAG-----ATKFDFANTTALFFVQLLLMGFAE 155
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D+ NPGS + FLG E L GS P YPGGPLFNPLGL KD ++ + KLKE+
Sbjct: 156 TKRYMDFINPGSQAEEGTFLGIEAALAGS-QPGYPGGPLFNPLGLAKDIENADEAKLKEI 214
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAM+A+LG+ VQ VT VGP NLL HL+DP N N++ +L
Sbjct: 215 KNGRLAMVAMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLS 259
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 109/164 (66%), Gaps = 10/164 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG +G + ++L AG+ + WF+ G + Y + A+ TL V+++ LMG+AE
Sbjct: 108 MLGVLGILVTDLLRVAGV---NSIPIWFEAGAV----KYEF-ANTGTLVVVQLLLMGYAE 159
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
RR+ D+ +PGS ++ F G E LGG +P YPGGPL NPLGL KD KS +++KLKE+
Sbjct: 160 TRRYMDFVSPGSQAKEGSFFGLEASLGGL-EPGYPGGPLLNPLGLAKDIKSAREWKLKEI 218
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAM+AILG FVQ VT VGP NL++HL++P + ++ L
Sbjct: 219 KNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQIL 262
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D PG F+PLGLG+D +S+K + E+ + R AML +LG V L+ G
Sbjct: 72 DGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAG 124
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 102/164 (62%), Gaps = 9/164 (5%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G + ++L GL W++ G T +A+ TLF+++M LMGF E
Sbjct: 114 MAGVAGILFTDLLRTTGL---SNLPVWYEAG-----ATKFQFANTTTLFIVQMLLMGFVE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
+R+ D+ NPGS G F G E L G +P YPGGP+ NPLG+ KD K+ ++KLKE+K
Sbjct: 166 TKRYMDFKNPGSQGEASFFGLEAALEGL-EPGYPGGPILNPLGIAKDIKNAPEWKLKEIK 224
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAM+AILG FVQ VT VGP +NL++HL+DP + ++ L
Sbjct: 225 NGRLAMVAILGIFVQASVTHVGPLENLVEHLSDPWHTTIIQILS 268
>gi|45269111|gb|AAS56914.1| CAB-like protein [Ipomoea nil]
Length = 96
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/80 (83%), Positives = 73/80 (91%), Gaps = 1/80 (1%)
Query: 88 SGDPAYP-GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 146
S DP+ GGP+FNPLG GKDEKS+KD KLKEVKNGRLAMLAILGYF+Q LVTGVGPYQN
Sbjct: 17 SVDPSNTLGGPIFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFIQALVTGVGPYQN 76
Query: 147 LLDHLADPVNNNVLTSLKFH 166
LLDHLADPVNNN+LT+LKFH
Sbjct: 77 LLDHLADPVNNNILTNLKFH 96
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 100/161 (62%), Gaps = 10/161 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G + +++ +G+ WF+ G T +A+ LF +++ LMGF E
Sbjct: 102 MAGVAGILGTDLIRVSGI---SNLPVWFEAG-----ATKFDFANTTALFFVQLLLMGFVE 153
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D NPGS + FLG E L G P YPGGPLFNP+GL KD K+ + KLKE+
Sbjct: 154 TKRYMDIVNPGSQAEEGTFLGIEASLEGL-QPGYPGGPLFNPMGLAKDIKNAHEVKLKEI 212
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
KNGRLAM+A+LG+FVQ VT VGP NLL HL+DP NNN++
Sbjct: 213 KNGRLAMVAMLGFFVQASVTHVGPIDNLLIHLSDPFNNNII 253
>gi|413939029|gb|AFW73580.1| hypothetical protein ZEAMMB73_964613 [Zea mays]
Length = 158
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 101/165 (61%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G + ++L +G WF+ G A +++ A+ LF +++ LMGFAE
Sbjct: 1 MAGVAGILFTDLLRVSG---NSDLPVWFEAG----AAKFDF-ANTTALFFVQLFLMGFAE 52
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D+ NPGS + F+G E L G P YPGGPLFNPLGL KD ++ D KLKE+
Sbjct: 53 TKRYMDFKNPGSQAEEGTFIGLEAALAGQ-QPGYPGGPLFNPLGLAKDIENAHDEKLKEI 111
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAM+A+LG+ VQ VT GP NLL HL+DP N N++ +
Sbjct: 112 KNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFS 156
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 107/166 (64%), Gaps = 14/166 (8%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 58
MLG G + ++L G+ IP WF+ G + Y++ A+ TLF++++ LMGF
Sbjct: 104 MLGVFGILVTDLLRVTGISKIP-----VWFEAGAV----KYDF-ANTKTLFLVQLVLMGF 153
Query: 59 AEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
E +R+ D+ +PGS ++ F G E L G +P YPGGPL NPLGL KD + D+KLK
Sbjct: 154 VETKRYMDFVSPGSQAKEGSFFGLEASLKGL-EPGYPGGPLLNPLGLAKDINNAHDWKLK 212
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
E+KNGRLAM+A+LG FVQ VT VGP NL++HL++P + ++ +L
Sbjct: 213 EIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTL 258
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 101/165 (61%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G + ++L +G WF+ G A +++ A+ LF +++ LMGFAE
Sbjct: 112 MAGVAGILFTDLLRVSG---NSDLPVWFEAG----AAKFDF-ANTTALFFVQLFLMGFAE 163
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D+ NPGS + F+G E L G P YPGGPLFNPLGL KD ++ D KLKE+
Sbjct: 164 TKRYMDFKNPGSQAEEGTFIGLEAALAGQ-QPGYPGGPLFNPLGLAKDIENAHDEKLKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAM+A+LG+ VQ VT GP NLL HL+DP N N++ +
Sbjct: 223 KNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFS 267
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 7/139 (5%)
Query: 27 WFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYL 85
WF+ G A +++ A+ LF +++ LMGFAE +R+ D+ NPGS + F+G E L
Sbjct: 181 WFEAG----AAKFDF-ANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEGTFIGLEAAL 235
Query: 86 GGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 145
G P YPGGPLFNPLGL KD ++ D KLKE+KNGRLAM+A+LG+ VQ VT GP
Sbjct: 236 AGQ-QPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQASVTHAGPID 294
Query: 146 NLLDHLADPVNNNVLTSLK 164
NLL HL+DP N N++ +
Sbjct: 295 NLLTHLSDPFNKNIIHTFS 313
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 101/165 (61%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G + ++L +G WF+ G A +++ A+ LF +++ LMGFAE
Sbjct: 112 MAGVAGILFTDLLRVSG---NSDLPVWFEAG----AAKFDF-ANTTALFFVQLFLMGFAE 163
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D+ NPGS + F+G E L G P YPGGPLFNPLGL KD ++ D KLKE+
Sbjct: 164 TKRYMDFKNPGSQAEEGTFIGLEAALAGQ-QPGYPGGPLFNPLGLAKDIENAHDEKLKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAM+A+LG+ VQ VT GP NLL HL+DP N N++ +
Sbjct: 223 KNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFS 267
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 102/165 (61%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + ++L G+ W++ G + Y + A TL V+++ MG+AE
Sbjct: 110 MLGIAGILFTDLLRVTGI---RKLPVWYEAGAV----KYEF-ASTRTLLVVQLLWMGYAE 161
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
RR+ D+ +PGS ++ F G E L G +P YPGGPL NP GL KD +S +D+KLKE+
Sbjct: 162 TRRYMDYVSPGSQNKEGSFFGMEAALEGL-EPGYPGGPLLNPFGLAKDIRSARDWKLKEI 220
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAM+A+LG FVQ VT GP NLL+HL+DP + ++ +L
Sbjct: 221 KNGRLAMVAMLGIFVQAAVTHTGPIDNLLEHLSDPWHKTIIQTLS 265
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL- 137
+L G P Y G L F+PLGLG+D +S+K + E+ + R AML I G L
Sbjct: 63 WLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLL 122
Query: 138 -VTGV 141
VTG+
Sbjct: 123 RVTGI 127
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 11/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + ++L G+ W++ G + +++ A TL V++ LMGFAE
Sbjct: 96 MLGVAGILFTDLLRTTGI---RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAE 147
Query: 61 HRRFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
+R+ D+ +PGS ++ +F G E L G +P YPGGPL NPLGL KD K+ D+KLKE
Sbjct: 148 TKRYVDYVSPGSQAKEGSFFFGIEAALEGL-EPGYPGGPLLNPLGLAKDIKNAHDWKLKE 206
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 207 IKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 105/166 (63%), Gaps = 14/166 (8%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 58
MLG G + ++L GL IP WF+ G + Y + + TL ++++ LMGF
Sbjct: 54 MLGVFGILVTDLLRVTGLSKIP-----VWFEAGAV----KYEF-TNTQTLIIVQLLLMGF 103
Query: 59 AEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
AE +R+ D+ +PGS ++ F G E G +P YPGGPL NPLGL KD K+ ++ KLK
Sbjct: 104 AETKRYMDFISPGSQAKEGSFFGLEASFEGL-EPGYPGGPLLNPLGLAKDIKNARESKLK 162
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
E+KNGRLAM+AILG FVQ VT VGP NL++HL++P + V+ +L
Sbjct: 163 EIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTL 208
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L G PAY G L F+PLGLG+D +S++ + E+ + R AML + G V L+
Sbjct: 7 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL 66
Query: 139 TGVG 142
G
Sbjct: 67 RVTG 70
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 11/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + ++L G+ W++ G + +++ A TL V++ LMGFAE
Sbjct: 96 MLGVAGILFTDLLRTTGI---RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAE 147
Query: 61 HRRFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
+R+ D+ +PGS ++ +F G E L G +P YPGGPL NPLGL KD K+ D+KLKE
Sbjct: 148 TKRYMDFVSPGSQAKEGSFFFGIEAALEGL-EPGYPGGPLLNPLGLAKDVKNAHDWKLKE 206
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 207 IKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHXTIIQTL 251
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L G P Y G L F+PLGLG+D +S+K + E+ + R AML + G L+
Sbjct: 49 WLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLL 108
Query: 139 TGVG 142
G
Sbjct: 109 RTTG 112
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 14/166 (8%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 58
MLG G + ++L GL IP WF+ G + Y + + TL ++++ LMGF
Sbjct: 107 MLGVFGILVTDLLRVTGLSKIP-----VWFEAGAV----KYEF-TNTQTLIIVQLLLMGF 156
Query: 59 AEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
AE +R+ D+ PGS ++ F G E G +P YPGGPL NPLGL KD K+ ++ KLK
Sbjct: 157 AETKRYMDFIGPGSQAKEGSFFGLEASFEGL-EPGYPGGPLLNPLGLAKDIKNARESKLK 215
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
E+KNGRLAM+AILG FVQ VT VGP NL++HL++P + V+ +L
Sbjct: 216 EIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTL 261
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L G PAY G L F+PLGLG+D +S++ + E+ + R AML + G V L+
Sbjct: 60 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL 119
Query: 139 TGVG 142
G
Sbjct: 120 RVTG 123
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 90/135 (66%), Gaps = 7/135 (5%)
Query: 27 WFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYL 85
WF+ G A + + A+ LF +++ LMGFAE +R+ D+ NPGS + F+G E L
Sbjct: 132 WFEAG----AAKFEF-ANTTALFFVQLLLMGFAETKRYMDFKNPGSQAEEGTFIGLEAAL 186
Query: 86 GGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 145
G P YPGGPLFNPLGL KD ++ + KLKE+KNGRLAM+A+LG+ VQ VT GP
Sbjct: 187 AGQ-QPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVAMLGFMVQASVTHAGPID 245
Query: 146 NLLDHLADPVNNNVL 160
NLL HL+DP N N++
Sbjct: 246 NLLTHLSDPFNKNII 260
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 105/165 (63%), Gaps = 11/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + ++L G+ W++ G + +++ A TL V++ LMGFAE
Sbjct: 88 MLGVAGILFTDLLRTTGI---RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAE 139
Query: 61 HRRFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
+R+ D+ +PGS ++ +F G E L G +P YPGGPL NPLGL KD ++ D+KLKE
Sbjct: 140 TKRYMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKE 198
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 199 IKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 243
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L G P Y G L F+PLGLG+D +S+K + E+ + R AML + G L+
Sbjct: 41 WLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLL 100
Query: 139 TGVG 142
G
Sbjct: 101 RTTG 104
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 105/165 (63%), Gaps = 11/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + ++L G+ W++ G + +++ A TL V++ LMGFAE
Sbjct: 96 MLGVAGILFTDLLRTTGI---RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAE 147
Query: 61 HRRFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
+R+ D+ +PGS ++ +F G E L G +P YPGGPL NPLGL KD ++ D+KLKE
Sbjct: 148 TKRYMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKE 206
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 207 IKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L G P Y G L F+PLGLG+D +S+K + E+ + R AML + G L+
Sbjct: 49 WLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLL 108
Query: 139 TGVG 142
G
Sbjct: 109 RTTG 112
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 58
M G G + +++ +G+ +P WF+ G T +A+ LF +++ LMGF
Sbjct: 100 MAGVAGILGTDLIRVSGIGNLP-----VWFEAG-----ATKFDFANTTALFFVQLLLMGF 149
Query: 59 AEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
E +R+ D+ +PGS ++ FLG E L G P YPGGPLFNP+GL KD ++ + KLK
Sbjct: 150 VETKRYMDFVSPGSQAKEGTFLGIEASLEGL-QPGYPGGPLFNPMGLAKDIENANEVKLK 208
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 165
E+KNGRLAM+A+LG+ VQ VT GP NLL HL+DP N N++ +L
Sbjct: 209 EIKNGRLAMVAMLGFIVQASVTHAGPIDNLLTHLSDPFNKNIIHALTL 256
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 105/165 (63%), Gaps = 11/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + ++L G+ W++ G + +++ A TL V++ LMGFAE
Sbjct: 96 MLGVAGILFTDLLRTTGI---RNLPVWYEAGAV----KFDF-ACTKTLIVVQFLLMGFAE 147
Query: 61 HRRFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
+R+ D+ +PGS ++ +F G E L G +P YPGGPL NPLGL KD ++ D+KLKE
Sbjct: 148 TKRYMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKE 206
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 207 IKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L G P Y G L F+PLGLG+D +S+K + E+ + R AML + G L+
Sbjct: 49 WLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLL 108
Query: 139 TGVG 142
G
Sbjct: 109 RTTG 112
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 103/169 (60%), Gaps = 6/169 (3%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT-YNYWADPYTLFVLEMALMGFA 59
MLGA G +APE L +IP+ T L WF+TG +PP ++Y LF+++M LMG
Sbjct: 64 MLGAAGCLAPEYLAHEKVIPKATGLLWFKTGFLPPVSAGFDYGLPVTALFLIQMGLMGTV 123
Query: 60 EHRRFQDWANPGSMGRQYFLG--FEKYLGGS--GDPAYPGGPLFNPLGLGKDEKS-MKDF 114
E R+ + +NPGS+ + + +G + G AYPGG +FNPLGLG + M+++
Sbjct: 124 ESLRWAELSNPGSLASNPLVPQPLARLIGTTRLGGGAYPGGLMFNPLGLGATRPAVMREY 183
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ E+++GRLAM+A LGY Q +VTG GPY N + HL DP NV+ L
Sbjct: 184 QQSEIRHGRLAMVACLGYAAQAVVTGKGPYTNWVAHLEDPDIENVVVLL 232
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 97/164 (59%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+L K G++ +W++ AG Y+AD TLF++E+ LM +AE
Sbjct: 115 MLGAAGIFIPELLTKIGIL---NTPSWYK------AGDATYFADQGTLFIVELLLMAWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D A PGS+ K G D YPGG F+PLG G E +K+ + KEV
Sbjct: 166 SRRWADIARPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSEDKLKEIRTKEV 223
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA+LG FVQ VT VGP NL HLADP + +L SL
Sbjct: 224 KNGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSL 267
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 102/165 (61%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + ++L G+ W+ G + Y + A+ TLF++++ LMGF E
Sbjct: 100 MLGVSGVLLTDLLRVTGI---SELPVWYNAGAV----EYGF-ANKRTLFIVQLLLMGFVE 151
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D+ +PGS ++ F G E G +P YPGGPL NPLG+ KD K+ D+KLKE+
Sbjct: 152 TKRYMDFKSPGSQAQEGTFFGLEAAFKGL-EPGYPGGPLLNPLGIAKDIKNAHDWKLKEI 210
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAM+A+LG FVQ VT GP NL++HL++P + ++ +L
Sbjct: 211 KNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLS 255
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 99 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL--VTGVG 142
F+PLGLG+D +S+K + E+ + R AML + G + L VTG+
Sbjct: 73 FDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGIS 118
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 102/165 (61%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G + ++L G+ W++ G + + + A LF++++ LMGF E
Sbjct: 106 MAGVAGILVTDLLRVTGI---SNLPVWYEAGAV----KFEF-ASTEALFIVQLILMGFVE 157
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D+ NPGS ++ F G E L G +P YPGGPL NPLGL +D K+ D+KLKE+
Sbjct: 158 TKRYMDFTNPGSQAKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLARDIKNAHDWKLKEI 216
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAM+A+LG FVQ VT GP +NL++HL++P + ++ ++
Sbjct: 217 KNGRLAMVAMLGVFVQASVTHAGPIENLVEHLSNPWHKTIIQTIS 261
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+L K G++ + W++ AG Y+AD TLF++E+ LM +AE
Sbjct: 64 MLGAAGIFIPELLTKIGILNTPS---WYK------AGDATYFADQGTLFIVELLLMAWAE 114
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D A PGS+ K G D YPGG F+PLG G E +K+ + KEV
Sbjct: 115 SRRWADIARPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSEDKLKEIRTKEV 172
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAMLA+LG FVQ VT VGP NL HLADP + +L S+
Sbjct: 173 KNGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSVS 217
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 97/165 (58%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G + ++L G W++ G T +AD TLFV+++ LMG+AE
Sbjct: 93 MAGIAGILVTDLLRTVG---GRDLPVWYEAG-----ATEFEFADTRTLFVVQLILMGYAE 144
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
RR+ D+ +PGS Q FLGFE L G YPGGP F+P GLG+D + + K KE+
Sbjct: 145 TRRYYDYISPGSQAAQDTFLGFEDALAGL-QSGYPGGPFFDPAGLGRDINNARTLKEKEL 203
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAM+AILG FVQ T GP NLL H++DP +N ++ +L
Sbjct: 204 KNGRLAMVAILGVFVQAFFTKTGPIDNLLTHVSDPWHNTIVQTLS 248
>gi|404503320|emb|CCJ09778.1| putative chlorophyll a/b binding protein, partial [Hirudo
medicinalis]
Length = 67
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 22 ETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 81
ETAL WF+TGVIPPAGTYNYWAD YTLFV E+AL+GFAEHRRFQDWANPGSMG+QYFLG
Sbjct: 2 ETALPWFKTGVIPPAGTYNYWADSYTLFVFELALVGFAEHRRFQDWANPGSMGKQYFLGL 61
Query: 82 EKYLGG 87
EK+LGG
Sbjct: 62 EKWLGG 67
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 95/165 (57%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 58
M G G + P +L KAG +P+ W+ G + ++ W TL +++ L GF
Sbjct: 75 MTGVAGILIPGLLTKAGALNVPE-----WYDAGKVAIENSFAPWG---TLLAVQLFLCGF 126
Query: 59 AEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
E +R+QD PGS G FLGFE L G+ + YPGGP F+PLGL K+ D+KLK
Sbjct: 127 VEVKRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGP-FDPLGLSKEADKWADWKLK 185
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
EVKNGRLAMLA LG+ Q TG GP NL+ HL DP + N T+
Sbjct: 186 EVKNGRLAMLAFLGFVAQKYATGAGPVDNLVAHLKDPWHVNYATN 230
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 82 EKYLGGSGDPAYPGGPL---------FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 132
+ +L GS PA+ P F+PLGLGKD ++ ++ E+ + R AM + G
Sbjct: 22 QSWLPGSQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWYQQAELIHCRTAMTGVAGI 81
Query: 133 FVQGLVTGVG 142
+ GL+T G
Sbjct: 82 LIPGLLTKAG 91
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G + ++L +G + WF+ G A +++ AD TLFV+++ LMGF E
Sbjct: 52 MAGVAGILFTDLLRASG---RTDIPVWFEAG----ATKFDF-ADTTTLFVVQLILMGFVE 103
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D PGS + F GFE G + YPGGPLFNPLG D + + KE+
Sbjct: 104 TKRWMDIVKPGSQAAEDSFFGFEAAFEGL-ETGYPGGPLFNPLGFANDPTKPQPLRWKEI 162
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAM+A++G+ VQ VT GP +NLL HL+DPV+N ++ +
Sbjct: 163 KNGRLAMVAMVGFMVQAYVTKTGPIENLLTHLSDPVHNTIIQRI 206
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 91/162 (56%), Gaps = 13/162 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L KAG++ T AG Y+ADP TLFV+E+ L +AE
Sbjct: 52 MLGAAGIFIPEALTKAGIL---------NTPSWNVAGDQQYFADPTTLFVIELILFAWAE 102
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG--KDEKSMKDFKLKE 118
RR+ D NPG + K G D YPGG F+PLG G KD K +K+ + KE
Sbjct: 103 GRRWADIVNPGCVNVDPVFPNNKLTGT--DVGYPGGLWFDPLGWGQTKDAKKLKELRTKE 160
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+KNGRLAMLA+LG VQ T GP NLL HLADP +N +
Sbjct: 161 IKNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIF 202
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG----PYQ 145
D + PG F+PLGLG D + +K F E+ + R AML G F+ +T G P
Sbjct: 16 DGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEALTKAGILNTPSW 75
Query: 146 NLL---DHLADPVNNNVLTSLKF 165
N+ + ADP V+ + F
Sbjct: 76 NVAGDQQYFADPTTLFVIELILF 98
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 101/164 (61%), Gaps = 10/164 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G G + ++L G+ W++ G + + + A TL V+++ LMGFAE
Sbjct: 107 MAGVAGILFTDLLRVTGI---RKLPVWYEAGAV----KFEF-ASTRTLIVVQLLLMGFAE 158
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
+R+ D+ +PGS ++ F G E L G +P YPGGPL NPLGL +D ++ +KLKE+
Sbjct: 159 TKRYMDFVSPGSQAKEGSFFGLESALEGL-EPGYPGGPLLNPLGLARDIENAHVWKLKEI 217
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAM+A++G FVQ VT GP NL++HL++P + ++ +L
Sbjct: 218 KNGRLAMVAMVGIFVQAAVTHAGPIDNLIEHLSNPWHRTIIQTL 261
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 94/165 (56%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 58
M G G + P +L KAG +P+ W+ G + ++ W +L +++ L GF
Sbjct: 81 MAGVAGILIPGLLTKAGALNVPE-----WYDAGKVAIENSFAPWG---SLLAVQLFLCGF 132
Query: 59 AEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
E +R+QD PGS G FLGFE L G+ + YPGGP F+PLGL K+ D+KLK
Sbjct: 133 VEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGP-FDPLGLSKEADKWADWKLK 191
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
EVKNGRLAMLA LG+ Q TG GP NL HL DP + N T+
Sbjct: 192 EVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVNYATN 236
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 82 EKYLGGSGDPAYPGGPL---------FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 132
+ +L GS PA+ P F+PLGLGKD +++ ++ E+ + R AM + G
Sbjct: 28 QSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQQAELIHCRTAMAGVAGI 87
Query: 133 FVQGLVTGVG 142
+ GL+T G
Sbjct: 88 LIPGLLTKAG 97
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 90/156 (57%), Gaps = 15/156 (9%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 58
MLG G +APE+L K G+ +P W A TY YWA TLF ++MA+ +
Sbjct: 86 MLGVAGCVAPELLTKIGVADLPN-----WVD------AATYQYWAPGGTLFFIQMAMFNW 134
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
AE RR+QD NPGS+ G+ + D YP G LF+ G KDEK+ + KLKE
Sbjct: 135 AEIRRWQDMKNPGSVNTDPLFGYNSNDTNT-DVGYPKG-LFDKFGWAKDEKTTAELKLKE 192
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
+KNGRLAMLA LG Q + TGVGP +NL H+ +P
Sbjct: 193 IKNGRLAMLAFLGICAQYVQTGVGPVENLFSHMGNP 228
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 88/154 (57%), Gaps = 11/154 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG GA+APE+L K G+ W AGTY YWA LF ++MA+ +AE
Sbjct: 89 MLGVAGAVAPELLTKIGVADLPN---WVD------AGTYQYWAPAGPLFFIQMAMFNWAE 139
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGSM G+ + D YPGG LF+ LG KD K+ KLKE+K
Sbjct: 140 VRRWQDMKNPGSMNTDPLFGYNSNDTNT-DVGYPGG-LFDKLGYAKDPAKAKELKLKEIK 197
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
NGRLAM+A LG Q + TG GP +NL H+A P
Sbjct: 198 NGRLAMVAFLGICAQYVQTGQGPVENLFSHIASP 231
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 94/162 (58%), Gaps = 14/162 (8%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPY-TLFVLEMALMG 57
M G + P +L KAG +P+ W+ G + ++ P+ L +++ L G
Sbjct: 81 MTAVAGILIPGLLTKAGALNVPE-----WYDAGKVAIESSFA----PFGALLAVQLFLTG 131
Query: 58 FAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 116
F E +R+QD+ PGS + FLGFE G+GD YPGG +F+PLGL KD + D+KL
Sbjct: 132 FVEAKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGG-IFDPLGLSKDADKLADWKL 190
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
KE+KNGRLAM+A LG+ Q TG GP NL HLADP + N
Sbjct: 191 KEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLADPWHVN 232
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 72 SMGRQYFL-GFE--KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 128
+ RQ +L G E K+L A G F+PLGLGKD ++++ ++ E+ + R AM A
Sbjct: 24 CVARQSWLPGSEIPKHLDSPAALAMAGNFGFDPLGLGKDAEALRWYQQAELVHARTAMTA 83
Query: 129 ILGYFVQGLVTGVG 142
+ G + GL+T G
Sbjct: 84 VAGILIPGLLTKAG 97
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 16/163 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K GLI A W+ AG Y+A TLFV+E L + E
Sbjct: 101 MLGVAGMLVPEVLTKIGLI---NAPLWYD------AGKVEYFAPASTLFVIEFILFHYVE 151
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + F F+ Y GD YPGG +FNPL ++ ++K KE+
Sbjct: 152 IRRWQDIKYPGSVSQDPF--FKSYKLPPGDVGYPGG-IFNPLKFPANQ----EYKEKEIA 204
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAMLA LG VQ +TG GP++NLL HLADP + ++ +L
Sbjct: 205 NGRLAMLAFLGMLVQSKLTGAGPFENLLTHLADPWHTTIVQTL 247
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY G L F+PLGL +D ++ + E++NGR AML + G V +
Sbjct: 53 EWLPGLPSPAYLNGSLAGDNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLVPEV 112
Query: 138 VTGVG 142
+T +G
Sbjct: 113 LTKIG 117
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 17/167 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYW----ADPYTLFVLEMALM 56
MLG G APE++ F G +P W A P TLFV++M +M
Sbjct: 92 MLGVTGMAAPELIQNP-----------FVEGAMPNWAEAPLWDGYMASPNTLFVVQMFMM 140
Query: 57 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 116
+AE RR+QD NPG+M G K + D YP G LF+P+G+ KD + +K K+
Sbjct: 141 NWAEVRRWQDMKNPGTMNEDPLTGANKG-DTNTDVGYPKG-LFDPMGMAKDPEKVKVLKV 198
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KE+ NGRLAM+A++G +Q TGVGP NL HLADP +N + T+
Sbjct: 199 KEIANGRLAMVAVMGCIIQNEATGVGPIANLKAHLADPAHNTIFTNF 245
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 83 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
K+L G+ PG F+PLGLG+D+ +++ +K E+++ R AML + G L+
Sbjct: 53 KHLDGT----MPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELI 104
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-TLFVLEMALMGFA 59
MLG G I P L + GL+ W G + A + N A P+ +L +++ L F
Sbjct: 83 MLGVAGIIFPAELTRVGLL---NVPDWADAGKVY-AESEN--AIPFASLLMVQFFLFNFV 136
Query: 60 EHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK-SMKDFKLK 117
E +R++D PGS FLGFE GSG YPGGP FNPLGLG K SM DFK +
Sbjct: 137 EIKRWEDIKKPGSQAEAGSFLGFESAFKGSGVSGYPGGP-FNPLGLGNSSKESMDDFKWR 195
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
E++NGRLAM+A LG+ Q TG GP NL DHLADP NN ++
Sbjct: 196 EIRNGRLAMMAFLGFLAQHAATGKGPLDNLADHLADPWANNFCSN 240
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D PG F+PL LG +++++ ++ E++NGR AML + G +T VG
Sbjct: 47 DGTLPGDFGFDPLNLGVNKEALDWYRNAELQNGRWAMLGVAGIIFPAELTRVG 99
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 92/167 (55%), Gaps = 15/167 (8%)
Query: 1 MLGAVGAIAPEILGKA---GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMG 57
MLG G APEI G G +P A A F G Y AD TLFV++M LM
Sbjct: 91 MLGVAGMAAPEIFGNPLVDGPLPN-WADAPFYDG---------YIADANTLFVVQMFLMN 140
Query: 58 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
+AE RR+QD NPGS+ + K G D YPGG LFNP+G+ K + K + K
Sbjct: 141 WAEVRRWQDMKNPGSVHADPYDESRKCTGT--DVGYPGGGLFNPMGMAKSAEEEKTLRTK 198
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
E+ NGRLAM+A +G F+Q VTG GP NL HLADP + + + +
Sbjct: 199 EIANGRLAMVAAMGCFIQHDVTGTGPVANLKAHLADPAHATIFQNFQ 245
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L KAG++ T AG Y+ D TLFV+E+ L +AE
Sbjct: 115 MLGAAGIFIPEALTKAGIL---------NTPSWTVAGDQQYFTDATTLFVIEIILFAWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK--DEKSMKDFKLKE 118
RR+ D NPG + K G D YPGG F+PLG G+ D +KD + +E
Sbjct: 166 GRRWADIINPGCVNVDPVFPNNKLTGT--DVGYPGGLWFDPLGWGQTGDAAKLKDLRTRE 223
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+KNGRLAMLA+LG VQ T GP NLL HLADP +N +
Sbjct: 224 IKNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIF 265
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D + +K F E+ + R AML G F+ +T G
Sbjct: 79 DGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEALTKAG 131
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 97/168 (57%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PEIL K G + + +W+ AG Y+ADP+TLF+ +MALMG+AE
Sbjct: 117 MLAVAGILIPEILQKWGFMEE---FSWYT------AGEREYFADPWTLFIAQMALMGWAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLGKDEKSMKDFKLKE 118
RR+ D+ NPGS+ + F + D YPGG F+ G G E M + KE
Sbjct: 168 GRRWMDYLNPGSVDIE--PRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMV-LRTKE 224
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA +G++ Q + TG GP NLL HLADP + N+ ++ H
Sbjct: 225 IKNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCNIFSAFTSH 272
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG + ++++ F E+ + R AMLA+ G + ++ G
Sbjct: 81 DGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAVAGILIPEILQKWG 133
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 96/167 (57%), Gaps = 11/167 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML A G + P++L + G I + +WF AG+ Y+ADP+TLFV +MALMG+AE
Sbjct: 115 MLAAAGILVPDLLARWGFI--DAGFSWFD------AGSREYFADPWTLFVSQMALMGWAE 166
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D+ PG + + F D YPGG F+ G+ + + + KE+
Sbjct: 167 GRRWADYLRPGCVDIE--PRFPNRRNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEI 224
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA +G++ Q + TG GP NLL HLADP + N+ ++ H
Sbjct: 225 KNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 271
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG + + ++ F E+ +GR AMLA G V L+ G
Sbjct: 79 DGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG 131
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 92/164 (56%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+L K G++ + W+ AG Y+AD TLF++E+ MG+AE
Sbjct: 111 MLGAAGIFIPELLTKIGILNTPS---WYT------AGEQTYFADQTTLFIVELLFMGWAE 161
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD-EKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G +K+ + KE+
Sbjct: 162 GRRWADILKPGSVNTDPVFPNNKLTGT--DVGYPGGFWFDPLGWGAGGAAKVKELRTKEI 219
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + V +L
Sbjct: 220 KNGRLAMLAVMGAWFQAVYTGTGPIDNLFAHLADPGHATVFAAL 263
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG + + +K F E+ + R AML G F+ L+T +G
Sbjct: 75 DGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIG 127
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 96/167 (57%), Gaps = 11/167 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML A G + P++L + G I + +WF AG+ Y+ADP+TLFV +MALMG+AE
Sbjct: 115 MLAAAGILVPDLLARWGFI--DAGFSWFD------AGSREYFADPWTLFVSQMALMGWAE 166
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D+ PG + + F D YPGG F+ G+ + + + KE+
Sbjct: 167 GRRWADYLRPGCVDIE--PRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEI 224
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA +G++ Q + TG GP NLL HLADP + N+ ++ H
Sbjct: 225 KNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 271
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG + + ++ F E+ +GR AMLA G V L+ G
Sbjct: 79 DGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG 131
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPGG +FNPL E++ K KE+
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKNYSLPPNEVGYPGG-IFNPLNFAPTEEA----KEKELA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP+ NLL H++DP +N ++ +L+
Sbjct: 207 NGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTLR 250
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P+Y PG F+PLGL +D +++K + E+ N R AML + G + +
Sbjct: 55 EWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEV 114
Query: 138 VTGVG 142
T +G
Sbjct: 115 FTKIG 119
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 100 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVE 150
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPGG +FNPL E++ K KE+
Sbjct: 151 IRRWQDIKNPGSVNQDPI--FKNYSLPPNEVGYPGG-IFNPLNFAPTEEA----KEKELA 203
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP+ NLL H++DP +N ++ +L+
Sbjct: 204 NGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTLR 247
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P+Y PG F+PLGL +D +++K + E+ N R AML + G + +
Sbjct: 52 EWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEV 111
Query: 138 VTGVG 142
T +G
Sbjct: 112 FTKIG 116
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 98/165 (59%), Gaps = 14/165 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K G + +W++ AGT Y+ADP TLF++++ALMG+ E
Sbjct: 104 MLGVSGILIPELLEKMGYV---ENYSWYE------AGTQEYFADPTTLFIVQLALMGWVE 154
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D NPGS+ + L D YPGG F+P+ G G E M + KE
Sbjct: 155 GRRWADLVNPGSVDIEPKL--PNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMV-LRTKE 211
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAMLA +G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 212 IKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAF 256
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS P + G L F+P+GLG D + +K E+ + R AML + G + L+
Sbjct: 57 WFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELL 116
Query: 139 TGVGPYQN-------LLDHLADPVN 156
+G +N ++ ADP
Sbjct: 117 EKMGYVENYSWYEAGTQEYFADPTT 141
>gi|223948005|gb|ACN28086.1| unknown [Zea mays]
Length = 163
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 96/167 (57%), Gaps = 11/167 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML A G + P++L + G I + +WF AG+ Y+ADP+TLFV +MALMG+AE
Sbjct: 7 MLAAAGILVPDLLARWGFI--DAGFSWFD------AGSREYFADPWTLFVSQMALMGWAE 58
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D+ PG + + F D YPGG F+ G+ + + + KE+
Sbjct: 59 GRRWADYLRPGCVDIE--PRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEI 116
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA +G++ Q + TG GP NLL HLADP + N+ ++ H
Sbjct: 117 KNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 163
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 91/165 (55%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+L K G++ +W+ AG Y+ D TLFV+EM +G+AE
Sbjct: 123 MLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDKTTLFVVEMIFLGWAE 173
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 174 GRRWADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 231
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAMLA++G + Q TG GP NLL HLADP + V +
Sbjct: 232 KNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFS 276
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 99 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
F+PLGLG D +++K E+ + R AML G F+ L+T +G
Sbjct: 96 FDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLG 139
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 91/165 (55%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+L K G++ +W+ AG Y+ D TLFV+EM +G+AE
Sbjct: 123 MLGAAGIFIPELLTKLGIL---NTPSWYT------AGEQEYFTDKTTLFVVEMIFLGWAE 173
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 174 GRRWADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 231
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAMLA++G + Q TG GP NLL HLADP + V +
Sbjct: 232 KNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFS 276
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 99 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
F+PLGLG D +++K E+ + R AML G F+ L+T +G
Sbjct: 96 FDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLG 139
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 96/167 (57%), Gaps = 11/167 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML A G + P++L + G I + +WF AG+ Y+ADP+TLFV +MALMG+AE
Sbjct: 76 MLAAAGILVPDLLARWGFI--DAGFSWFD------AGSREYFADPWTLFVSQMALMGWAE 127
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D+ PG + + F D YPGG F+ G+ + + + KE+
Sbjct: 128 GRRWADYLRPGCVDIE--PRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEI 185
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA +G++ Q + TG GP NLL HLADP + N+ ++ H
Sbjct: 186 KNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 232
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG + + ++ F E+ +GR AMLA G V L+ G
Sbjct: 40 DGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG 92
>gi|11762172|gb|AAG40364.1|AF325012_1 AT3g47470 [Arabidopsis thaliana]
Length = 148
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I W+ AG Y+A TLFV+E L + E
Sbjct: 1 MLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVE 51
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y G+ YPGG +FNPL +++ K KE+
Sbjct: 52 IRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGG-IFNPLNFAPTQEA----KEKELA 104
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ +
Sbjct: 105 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 148
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 96/168 (57%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML A G + PE+L K G + +W AG +Y+ADP+TLFV +MALMG+AE
Sbjct: 109 MLAAAGILVPEVLEKWGFMED---YSWID------AGARDYFADPWTLFVSQMALMGWAE 159
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLGKDEKSMKDFKLKE 118
RR+ D+ NPG + + L + D YPGG F+ G G E M + KE
Sbjct: 160 GRRWADYLNPGCVAVEPRLPNRR--NPVPDVGYPGGLWFDWGNWGRGSPEPVMV-LRTKE 216
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA +G++ Q + TG GP NLL HLADP + NV ++ H
Sbjct: 217 IKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN--- 146
D + PG F+PLGLG D + ++ F E+ + R AMLA G V ++ G ++
Sbjct: 73 DGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILVPEVLEKWGFMEDYSW 132
Query: 147 ----LLDHLADP 154
D+ ADP
Sbjct: 133 IDAGARDYFADP 144
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I W+ AG Y+A TLFV+E L + E
Sbjct: 105 MLGVAGMLLPEVFTKLGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVE 155
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y G+ YPGG +FNPL ++ K KE+
Sbjct: 156 IRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGG-IFNPLNFAPTLEA----KEKEIA 208
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ +L
Sbjct: 209 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 252
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y G L F+PLGL +D +++K F E+ NGR AML + G + +
Sbjct: 57 EWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 116
Query: 138 VTGVG 142
T +G
Sbjct: 117 FTKLG 121
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 87/162 (53%), Gaps = 13/162 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ T AG +Y+ D TLFV+E+ L +AE
Sbjct: 120 MLGAAGIFIPEALTKMGIL---------NTPSWTVAGDADYFTDKTTLFVIELILFAWAE 170
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK--DEKSMKDFKLKE 118
RR+ D NPG + K G D YPGG F+PLG G+ D +KD + +E
Sbjct: 171 GRRWADIVNPGCVNVDPVFPNNKLTGT--DVGYPGGLWFDPLGWGQTSDAAKLKDLRTRE 228
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+KNGRLAMLA+LG VQ T GP NL+ HL DP +N +
Sbjct: 229 IKNGRLAMLAVLGAIVQANYTHTGPIDNLVAHLVDPGHNTIF 270
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 16/163 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I W+ AG Y+A TLFV+E L + E
Sbjct: 104 MLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVE 154
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y G+ YPGG +FNPL +++ K KE+
Sbjct: 155 IRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGG-IFNPLNFAPTQEA----KEKELA 207
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ +
Sbjct: 208 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y G L F+PLGL +D +++K F E+ NGR AML + G + +
Sbjct: 56 EWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 115
Query: 138 VTGVG 142
T +G
Sbjct: 116 FTKIG 120
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 90/161 (55%), Gaps = 12/161 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFA 59
MLG G + PE+L K G+ W AG ++ YW LF ++MA+M +A
Sbjct: 92 MLGLAGMVGPELLTKIGMADLPN---WID------AGKWDGYWLGAGPLFFVQMAMMNWA 142
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
E RR+QD PG+M G K + D YP G LF+P+G KD K ++ K KE+
Sbjct: 143 EVRRWQDMKAPGTMNEDPLTGANKGDTNT-DVGYPKG-LFDPMGYAKDPKKAEELKRKEI 200
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
NGRLAM+AI+G F Q + TG GP NL HLADP +NN+
Sbjct: 201 ANGRLAMVAIVGCFAQAISTGTGPVDNLFTHLADPGHNNIF 241
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L GS PA+ G L F+PL LG D +++K F E+ + R AML + G L+
Sbjct: 45 WLPGSPAPAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELL 104
Query: 139 TGVG 142
T +G
Sbjct: 105 TKIG 108
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 15/167 (8%)
Query: 1 MLGAVGAIAPEILGKA---GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMG 57
MLG G APE++G G +P +F Y AD TLFV++M M
Sbjct: 92 MLGVAGMAAPELVGNPFVDGPLPNWAEAPFFD----------GYIADANTLFVVQMFFMN 141
Query: 58 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
+AE RR+QD NPGS+ + K G D YPGG LFNP+G+ K K + K
Sbjct: 142 WAEVRRWQDMKNPGSVHADPYDENRKCTGS--DVGYPGGGLFNPMGMAKSVADEKALRAK 199
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
E+ NGRLAM+A +G F+Q VTG GP NL H+ADPV+ + + +
Sbjct: 200 EIANGRLAMVAAMGCFIQHDVTGTGPVANLKAHIADPVHVTIFQNFQ 246
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 93/161 (57%), Gaps = 12/161 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML A G + ++LG G A WF+ A + Y+A TLF++E+ L + E
Sbjct: 88 MLAAAGILFVDLLGHLGAGGPAAATPWFK------ASDFTYFAPTSTLFIVELLLFAWVE 141
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSG-DPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
RR+QD PGS + F +Y SG +P YPGG +F+PLG K +M + KLKE+
Sbjct: 142 VRRYQDMVKPGSTNQDPI--FSQYSLPSGNEPGYPGG-IFDPLGYSKG--NMAELKLKEI 196
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
KN RLAMLA+LG+FVQ TG P +L HLADP +NNV
Sbjct: 197 KNARLAMLAVLGFFVQAKTTGKTPLDSLSSHLADPWSNNVF 237
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
+L GS P+Y G L F+PL LG+D ++K ++ E++NGR AMLA G L
Sbjct: 40 SWLPGSEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDL 99
Query: 138 VTGVG 142
+ +G
Sbjct: 100 LGHLG 104
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 90/165 (54%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+ K G++ +W+ AG Y+ D TLFV+EM +G+AE
Sbjct: 123 MLGAAGIFIPELCTKLGIL---NTPSWYT------AGELEYFTDKTTLFVVEMIFLGWAE 173
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 174 GRRWADILEPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 231
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAMLA++G + Q TG GP NLL HLADP + + +
Sbjct: 232 KNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATIFAAFS 276
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +++K E+ + R AML G F+ L T +G
Sbjct: 87 DGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELCTKLG 139
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ + +W+ AG Y+ D TLF++E+ L+G+AE
Sbjct: 107 MLGAAGIFIPEFLTKIGIL---STPSWYT------AGEQQYFTDTTTLFIIELILIGWAE 157
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 158 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKLKELRTKEI 215
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q TG GP NL HLADP + N+ +
Sbjct: 216 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHANIFQAF 259
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+P GLG D +S++ E+ + R AML G F+ +T +G
Sbjct: 71 DGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 123
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGL+ +A W+ AG Y+A TLFV+E L + E
Sbjct: 98 MLGVAGMLIPELLTKAGLL---SAPEWYD------AGKETYFASSSTLFVVEFILFHYVE 148
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y D YPG +FNPL ++ K KE+
Sbjct: 149 IRRWQDIKNPGSVNQDPI--FKSYSLPDHDCGYPGS-VFNPLNFAPTLEN----KEKELA 201
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NL+ HLADP +N ++ +
Sbjct: 202 NGRLAMLAFLGFLVQHNVTGKGPFENLMQHLADPWHNTIIQTFS 245
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY G L F+PL L +D ++ F E+ NGR AML + G + L
Sbjct: 50 QWLPGLASPAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPEL 109
Query: 138 VTGVG 142
+T G
Sbjct: 110 LTKAG 114
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 95/168 (56%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE+L K G + +W AG +Y+ADP+TLFV +MALMG+AE
Sbjct: 109 MLAVAGILVPEVLEKWGFMED---YSWID------AGARDYFADPWTLFVSQMALMGWAE 159
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLGKDEKSMKDFKLKE 118
RR+ D+ NPG + + L + D YPGG F+ G G E M + KE
Sbjct: 160 GRRWADYLNPGCVAVEPRLPNRR--NPVPDVGYPGGLWFDWGNWGRGSPEPVMV-LRTKE 216
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA +G++ Q + TG GP NLL HLADP + NV ++ H
Sbjct: 217 IKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN--- 146
D + PG F+PLGLG D + ++ F E+ + R AMLA+ G V ++ G ++
Sbjct: 73 DGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGFMEDYSW 132
Query: 147 ----LLDHLADP 154
D+ ADP
Sbjct: 133 IDAGARDYFADP 144
>gi|145079211|tpg|DAA05904.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Acetabularia acetabulum]
Length = 202
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFA 59
MLGA G IAPE LGK G IP+ TAL W+++GVIPPAG + YW +T+F + LM FA
Sbjct: 111 MLGAAGCIAPEFLGKLGAIPESTALIWWKSGVIPPAGDTDIYWGSSWTVFWVNACLMNFA 170
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 91
E RR QD+ NPGSM +Q LG EK + GSGDP
Sbjct: 171 ELRRLQDYKNPGSMNKQGLLGIEKLMAGSGDP 202
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 91/165 (55%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+L K G++ +W+ AG Y+ D TLF++E+ L+G+AE
Sbjct: 115 MLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVLIGWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 166 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 223
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL D +S++ + E+ + R AML G F+ L+T +G
Sbjct: 79 DGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIG 131
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 114 MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 164
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D NPG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 165 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 266
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +S++ E+ + R AML G F+ +T +G
Sbjct: 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLG 130
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PEIL K G + + +W+ AG Y+ADP+TLFV +MALMG+ E
Sbjct: 118 MLAVAGILIPEILQKWGFMEE---FSWYT------AGEREYFADPWTLFVTQMALMGWVE 168
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLGKDEKSMKDFKLKE 118
RR+ D+ NPGS+ + F + D YPGG F+ G G E M + KE
Sbjct: 169 GRRWMDYLNPGSVDIE--PRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMV-LRTKE 225
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA +G++ Q + TG GP NL HLADP + N+ ++ H
Sbjct: 226 IKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 273
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLG G + +S++ F E+ +GR AMLA+ G + ++ G
Sbjct: 82 DGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEILQKWG 134
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE
Sbjct: 101 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAE 151
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 152 GRRWADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 210 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 253
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL D +S+K E+ + R AML G F+ +T +G
Sbjct: 65 DGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIG 117
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 91/161 (56%), Gaps = 17/161 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + P+ L P +T +W + AG + YWA LF ++MA+M +AE
Sbjct: 84 MLGVAGMVGPD------LAPWDTP-SWIE------AGKFEYWAPAGPLFFIQMAMMNWAE 130
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD +PGSM + G+ + D YPGG LF+ LG K K + KLKE+K
Sbjct: 131 VRRWQDMKDPGSMNKDPLFGYNANDTNT-DVGYPGG-LFDKLGYAK--KDLDTLKLKEIK 186
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
NGRLAM+AI G FVQG TGV P NL H+A+P N+
Sbjct: 187 NGRLAMVAIAGCFVQGATTGVSPLTNLTSHIANPGAVNIFN 227
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE
Sbjct: 101 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAE 151
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 152 GRRWADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 210 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 253
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL D S+K E+ + R AML G F+ +T +G
Sbjct: 65 DGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIG 117
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 92/165 (55%), Gaps = 14/165 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE L + G I +W+ AG ++ADP TLFV+++ALMG+ E
Sbjct: 104 MLAVAGILIPECLERLGFIEN---FSWYD------AGAQEFFADPTTLFVVQLALMGWVE 154
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D NPG + Q L F D YPGG F+P G G E M + KE
Sbjct: 155 GRRWADLINPGCVDIQ--LTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMV-LRTKE 211
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAMLA +G+ Q + TG GP +NL+ H+ADP + NV ++
Sbjct: 212 IKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAF 256
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS P + G L F+PLGLG D + ++ F E+ + R AMLA+ G + +
Sbjct: 57 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECL 116
Query: 139 TGVGPYQNL 147
+G +N
Sbjct: 117 ERLGFIENF 125
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE
Sbjct: 102 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 153 GRRWADIIKPGSVNTDPVFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL D S+K E+ + R AML G F+ +T +G
Sbjct: 66 DGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIG 118
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE
Sbjct: 102 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 153 GRRWADIIKPGSVNTDPVFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 90/165 (54%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE
Sbjct: 115 MLGAAGIFIPEFLTKIGVL---NTPSWYT------AGEQEYFTDTTTLFVIELVLIGWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 166 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 223
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +S+K E+ + R AML G F+ +T +G
Sbjct: 79 DGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIG 131
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 113 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELIFIGWAE 163
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D NPG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 164 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 221
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 222 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 265
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL D +S+K E+ + R AML G F+ +T +G
Sbjct: 77 DGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 129
>gi|255642841|gb|ACU22606.1| unknown [Glycine max]
Length = 150
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 1 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKSEYFASSSTLFVIEFILFHYVE 51
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y + YPG +FNPL ++ K KE+
Sbjct: 52 IRRWQDIKNPGSVNQDPI--FKQYSLPQHECGYPGS-VFNPLNFAPTLEA----KEKELA 104
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ +++
Sbjct: 105 NGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTIR 148
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE
Sbjct: 102 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 153 GRRWADIIKPGSVNTDPVFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL D S+K E+ + R AML G F+ +T +G
Sbjct: 66 DGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIG 118
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 101 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 158
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 159 QVVLMGAVEGYRVA--GGP--------------LGEIVDPLYPGGS-FDPLGLAEDPEAF 201
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 202 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 248
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 21 MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 71
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D NPG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 72 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSASPQKLKELRTKEI 129
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 130 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 173
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PEIL K G + + +W+ AG Y+ADP+TLFV +MALMG+ E
Sbjct: 115 MLAVAGILIPEILQKWGFMEE---FSWYT------AGEREYFADPWTLFVTQMALMGWVE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLGKDEKSMKDFKLKE 118
RR+ D+ NPGS+ + F + D YPGG F+ G G E M + KE
Sbjct: 166 GRRWMDYLNPGSVDIE--PRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMV-LRTKE 222
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA +G++ Q + TG GP NL HLADP + N+ ++ H
Sbjct: 223 IKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 270
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLG G + +S++ F E+ +GR AMLA+ G + ++ G
Sbjct: 79 DGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEILQKWG 131
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 139 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELIFIGWAE 189
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D NPG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 190 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 247
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
KNGRLAMLA++G + Q + TG GP NL HLADP
Sbjct: 248 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 282
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 113 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELIFIGWAE 163
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D NPG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 164 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 221
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 222 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 265
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL D +S+K E+ + R AML G F+ +T +G
Sbjct: 77 DGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 129
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++EM +G+AE
Sbjct: 116 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDKTTLFIVEMIFIGWAE 166
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G +K+ + KE+
Sbjct: 167 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPDKIKELRTKEI 224
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 225 KNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 268
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +++K E+ + R AML G F+ +T +G
Sbjct: 80 DGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIG 132
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++EM +G+AE
Sbjct: 117 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDKTTLFIVEMIFIGWAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G +K+ + KE+
Sbjct: 168 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPDKIKELRTKEI 225
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 226 KNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 269
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +++K E+ + R AML G F+ +T +G
Sbjct: 81 DGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIG 133
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 114 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELIFIGWAE 164
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 165 GRRWADILKPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + V +
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 266
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE
Sbjct: 98 MLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFVVELILIGWAE 148
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 149 GRRWADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGYGNGSPEKLKELRTKEI 206
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 207 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAF 250
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+P GLG D +S++ E+ + R AML G F+ L+T +G
Sbjct: 62 DGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIG 114
>gi|194701622|gb|ACF84895.1| unknown [Zea mays]
Length = 149
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGLI A W+ AG Y+A TLFV+E L + E
Sbjct: 1 MLGVAGMLIPEVLTKAGLI---NAPQWYD------AGKSEYFASSSTLFVIEFILFHYVE 51
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 52 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELA 104
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA L + +Q VTG GP+ NLL HL+DP +N ++ +L
Sbjct: 105 NGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 148
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+L K G++ +W+ AG Y+AD TLF++E+ L+G+AE
Sbjct: 103 MLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQTYFADTTTLFIVELILIGWAE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 154 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGYGSGSPEKIKELRTKEI 211
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 212 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAFT 256
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+P GLG D +S++ E+ + R AML G F+ L+T +G
Sbjct: 67 DGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIG 119
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 92/165 (55%), Gaps = 14/165 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE L + G I +W+ AG ++ADP TLFV+++ALMG+ E
Sbjct: 74 MLAVAGILIPECLERLGFIEN---FSWYD------AGAQEFFADPTTLFVVQLALMGWVE 124
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D NPG + Q L F D YPGG F+P G G E M + KE
Sbjct: 125 GRRWADLINPGCVDIQ--LTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMV-LRTKE 181
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAMLA +G+ Q + TG GP +NL+ H+ADP + NV ++
Sbjct: 182 IKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAF 226
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
D + PG F+PLGLG D + ++ F E+ + R AMLA+ G + + +G +N
Sbjct: 38 DGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLERLGFIENF 95
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKSEYFASSSTLFVIEFILFHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y + YPG +FNPL ++ K KE+
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPQHECGYPGS-VFNPLNFAPTLEA----KEKELA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ +++
Sbjct: 207 NGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTIR 250
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y PG F+PLGL +D ++++ + E+ NGR AML + G + +
Sbjct: 55 EWLPGLASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEV 114
Query: 138 VTGVG 142
T +G
Sbjct: 115 FTKIG 119
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 102 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKQEYFASSSTLFVIEFILFHYVE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPGG +FNPL ++ K KE+
Sbjct: 153 IRRWQDIKNPGSVNQDPI--FKSYRLPPNEVGYPGG-IFNPLNFAPSLEA----KEKEIA 205
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q +TG GP+ NLL HL+DP +N ++ +L
Sbjct: 206 NGRLAMLAFLGFLIQHNLTGKGPFDNLLQHLSDPWHNTIIQTLS 249
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 79 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
L YL GS PG F+PLGL +D +++K F E++NGR AML + G + +
Sbjct: 59 LASPDYLNGS----LPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVF 114
Query: 139 TGVG 142
T +G
Sbjct: 115 TKIG 118
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 14/165 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE+L + G I +W+ AGT Y+ DP TLFV++M LMG+ E
Sbjct: 106 MLAVFGILVPELLERIGYIEN---FSWYD------AGTREYFVDPTTLFVVQMGLMGWVE 156
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D NPGS+ + + D YPGG F+P+ G G E M + KE
Sbjct: 157 GRRWADIVNPGSVDIEPKV--PHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMV-LRTKE 213
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAMLA +G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 214 IKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS P + G L F+PLGLG D + +K F E+ + R AMLA+ G V L+
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELL 118
Query: 139 TGVGPYQNL 147
+G +N
Sbjct: 119 ERIGYIENF 127
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PEIL K G + + +W+ AG Y+ADP+TLFV +MALMG+ E
Sbjct: 118 MLAVAGILIPEILQKWGFMEE---FSWYT------AGEREYFADPWTLFVTQMALMGWVE 168
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLGKDEKSMKDFKLKE 118
RR+ D+ NPGS+ + F + D YPGG F+ G G E M + KE
Sbjct: 169 GRRWMDYLNPGSVDIE--PRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMV-LRTKE 225
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA +G++ Q + TG GP NL HLADP + N+ ++ H
Sbjct: 226 IKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFTSH 273
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLG G + +S++ F E+ +GR AMLA+ G + ++ G
Sbjct: 82 DGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEILQKWG 134
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 94/165 (56%), Gaps = 13/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALMGF 58
MLGA G I I K GL P+ W+ G V+ ++ TL + ++ LMG+
Sbjct: 80 MLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVEKNNIDF----PTLLITQLYLMGW 130
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLK 117
AE +R+ D+ NPGS G FLGF G + YPGG F+P+GL + D K++K K
Sbjct: 131 AETKRWYDFKNPGSQGDGSFLGFTDEFKGL-ENGYPGGRFFDPMGLSRGDADKYKEYKQK 189
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
E+KNGRLAM+A LG+ Q TG GP NL DHLADP + N T+
Sbjct: 190 EIKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFATN 234
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGLI A W+ AG Y+A TLFV+E L + E
Sbjct: 99 MLGVAGMLIPEVLTKAGLI---NAPQWYD------AGKSEYFASSSTLFVVEFILFXYVE 149
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 150 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELA 202
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VTG GP+ NLL HL+DP +N ++ +
Sbjct: 203 NGRLAMLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 246
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P+Y G L F+PLGL +D ++++ F E+ NGR AML + G + +
Sbjct: 51 EWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEV 110
Query: 138 VTGVG 142
+T G
Sbjct: 111 LTKAG 115
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGLI A W+ AG Y+A TLFV+E L + E
Sbjct: 96 MLGVAGMLIPEVLTKAGLI---NAPQWYD------AGKSEYFASSSTLFVIEFILFHYVE 146
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 147 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELA 199
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA L + +Q VTG GP+ NLL HL+DP +N ++ +L
Sbjct: 200 NGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY PG F+PLGL +D ++++ + E+ NGR AML + G + +
Sbjct: 48 EWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEV 107
Query: 138 VTGVG 142
+T G
Sbjct: 108 LTKAG 112
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 41 MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 91
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D NPG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 92 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSASPQKLKELRTKEI 149
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
KNGRLAMLA++G + Q + TG GP NL HLADP
Sbjct: 150 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 184
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGLI A W+ AG Y+A TLFV+E L + E
Sbjct: 104 MLGVAGMLIPEVLTKAGLI---NAPQWYD------AGKSEYFASSSTLFVIEFILFHYVE 154
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 155 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELA 207
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA L + +Q VTG GP+ NLL HL+DP +N ++ +L
Sbjct: 208 NGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 251
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY PG F+PLGL +D ++++ + E+ NGR AML + G + +
Sbjct: 56 EWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEV 115
Query: 138 VTGVG 142
+T G
Sbjct: 116 LTKAG 120
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGLI A W+ AG Y+A TLFV+E L + E
Sbjct: 99 MLGVAGMLIPEVLTKAGLI---NAPQWYD------AGKSEYFASSSTLFVVEFILFHYVE 149
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 150 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELA 202
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VTG GP+ NLL HL+DP +N ++ +
Sbjct: 203 NGRLAMLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 246
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P+Y G L F+PLGL +D ++++ F E+ NGR AML + G + +
Sbjct: 51 EWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEV 110
Query: 138 VTGVG 142
+T G
Sbjct: 111 LTKAG 115
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE
Sbjct: 101 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAE 151
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 152 GRRWADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRL MLA++G + Q + TG GP NL HLADP + + +
Sbjct: 210 KNGRLTMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 253
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL D S+K E+ + R AML G F+ +T +G
Sbjct: 65 DGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIG 117
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 117 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFIVELFFIGWAE 167
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 168 GRRWADILKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 225
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + V ++
Sbjct: 226 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFSAF 269
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D ++++ E+ + R AML G F+ +T +G
Sbjct: 81 DGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 133
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 93/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGL+ A W+ AG Y+A TLFV+E L + E
Sbjct: 96 MLGVAGMLIPEVLTKAGLL---NAPEWYD------AGKETYFASSSTLFVIEFILFHYVE 146
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 147 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEN----KEKELA 199
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NL HLADP +N ++ ++
Sbjct: 200 NGRLAMLAFLGFLVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 243
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
+L G PAY G L F+PL L +D + ++ F E+ NGR AML + G + +
Sbjct: 48 SWLPGLQSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEV 107
Query: 138 VTGVG 142
+T G
Sbjct: 108 LTKAG 112
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G+I W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTNIGII---NVPKWYD------AGKEEYFASSSTLFVIEFILFHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y G+ YPGG +FNPL ++ K KE+
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGG-IFNPLNFAPTLEA----KEKEIA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VTG GP+ NLL HL+DP +N ++ +L
Sbjct: 207 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHLSDPWHNTIVQTLS 250
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y PG F+PLGL +D +++K F E+ NGR AML + G + +
Sbjct: 55 EWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 114
Query: 138 VTGVG 142
T +G
Sbjct: 115 FTNIG 119
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 92/163 (56%), Gaps = 16/163 (9%)
Query: 2 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEH 61
LG G + PE+L GLI W+ AG Y+A TLFV+E L + E
Sbjct: 104 LGVAGMLLPEVLTNIGLI---NVPKWYD------AGKAEYFASSSTLFVIEFILFHYVEI 154
Query: 62 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 121
RR+QD NPGS+ + F++Y + YPGG +FNPL E++ K +E+ N
Sbjct: 155 RRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTEEA----KERELAN 207
Query: 122 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
GRLAMLA LG+ VQ VTG GP+ NLL HL+DP +N ++ +L
Sbjct: 208 GRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIVQTLS 250
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 79 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
L YL GS PG F+PL L +D +++K F E+ NGR A L + G + ++
Sbjct: 60 LASPNYLNGS----LPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVL 115
Query: 139 TGVG 142
T +G
Sbjct: 116 TNIG 119
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 93/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I W+ AG Y+A TLFV+E L + E
Sbjct: 104 MLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVE 154
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y + YPGG +FNPL ++ K KE+
Sbjct: 155 IRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTVEA----KEKELA 207
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VTG GP++NLL HL+DP +N ++ +L
Sbjct: 208 NGRLAMLAFLGFVIQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 251
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y G L F+PLGL +D +++K F E+ NGR AML + G + +
Sbjct: 56 EWLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 115
Query: 138 VTGVG 142
T +G
Sbjct: 116 FTKIG 120
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 93/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGL+ A W+ AG Y+A TLFV+E L + E
Sbjct: 79 MLGVAGMLIPEVLTKAGLL---NAPEWYD------AGKETYFASSSTLFVIEFILFHYVE 129
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 130 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEN----KEKELA 182
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NL HLADP +N ++ ++
Sbjct: 183 NGRLAMLAFLGFLVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 226
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
+L G PAY G L F+PL L +D + ++ F E+ NGR AML + G + +
Sbjct: 31 SWLPGLQSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEV 90
Query: 138 VTGVG 142
+T G
Sbjct: 91 LTKAG 95
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ L+G+AE
Sbjct: 108 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQQYFTDTTTLFIIELILIGWAE 158
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 159 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGTGSPEKIKELRTKEI 216
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 217 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 260
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +S++ E+ + R AML G F+ +T +G
Sbjct: 72 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 124
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 93/165 (56%), Gaps = 14/165 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE+L K G I +W+ AG Y+ DP TLFV++M LMG+ E
Sbjct: 106 MLAVFGILVPELLEKIGYIEN---FSWYD------AGAREYFVDPTTLFVVQMGLMGWVE 156
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D NPGS+ + + D YPGG F+P+ G G E M + KE
Sbjct: 157 GRRWADMVNPGSVDIEPKV--PHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMV-LRTKE 213
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAMLA +G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 214 IKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS P + G L F+PLGLG D + +K F E+ + R AMLA+ G V L+
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELL 118
Query: 139 TGVGPYQNL 147
+G +N
Sbjct: 119 EKIGYIENF 127
>gi|359754923|gb|AEV59651.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 170
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/59 (91%), Positives = 55/59 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFA 59
MLGA GAIAPEILGKAGLIP+ETAL WFQTGVIPPAGTYNYWAD YTLFVLEMALM FA
Sbjct: 112 MLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVLEMALMXFA 170
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 114 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFIVELFFIGWAE 164
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 165 GRRWADILKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + V ++
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFSAF 266
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D ++++ E+ + R AML G F+ +T +G
Sbjct: 78 DGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 130
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 115 MLGAAGIFIPEFLTKIGIL---NTPSWYD------AGKLEYFTDTTTLFIIELIFIGWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + + G D YPGG F+PLG G + +K+ + KE+
Sbjct: 166 GRRWADILKPGCVNTDPIFPNNRLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
KNGRLAMLA++G + Q + TG GP NL HLADP + V +
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFS 268
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D ++++ E+ + R AML G F+ +T +G
Sbjct: 79 DGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 131
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE+L K G++ +W+ AG Y+ D TLF++E+ L+G+AE
Sbjct: 100 MLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELILIGWAE 150
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 151 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGYGTGSPEKLKELRTKEI 208
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 209 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAF 252
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+P GLG D +S++ E+ + R AML G F+ L+T +G
Sbjct: 64 DGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIG 116
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 93/163 (57%), Gaps = 16/163 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G+I W+ AG Y+A TLFV+E L + E
Sbjct: 19 MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 69
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y +G+ YPGG +FNPL ++ K KE+
Sbjct: 70 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPLNFAPTLEA----KEKEIA 122
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAMLA LG+ +Q VTG GP+ NLL H++DP +N ++ +L
Sbjct: 123 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 95/166 (57%), Gaps = 15/166 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY---TLFVLEMALMG 57
M G + PE+L G + W++ AG Y + P TL LE+
Sbjct: 84 MAAVAGILIPEVLKAFGAV---NLPVWYE------AGKYAQESSPIPFNTLIALEIFAFN 134
Query: 58 FAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 116
F E +R+QD+ PGS G + F+G E + G+G+ YPGG +F+PLGL K + KL
Sbjct: 135 FVEIKRWQDFKKPGSQGEEGSFVGLEGFFKGTGENGYPGG-VFDPLGLSKG-PGYEAMKL 192
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+E+KNGRLAMLA +G+ Q L TG GP +NLLDHL++P+ NN T+
Sbjct: 193 REIKNGRLAMLAFIGFASQYLATGKGPIENLLDHLSNPLANNFTTN 238
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 72 SMGRQYFLGFEKYLGGSGDPAY----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 127
S G + + +L GS PAY PG F+PL LG+D S+K + E+ + R AM
Sbjct: 26 SNGSRVCMKAGNWLPGSKTPAYLEDLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMA 85
Query: 128 AILGYFVQGLVTGVG 142
A+ G + ++ G
Sbjct: 86 AVAGILIPEVLKAFG 100
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 114 MLGAAGIFIPEFLTKIGIL---NTPSWYS------AGEVEYFTDTTTLFIVELFFIGWAE 164
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 165 GRRWADILKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + V +
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 266
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D ++++ E+ + R AML G F+ +T +G
Sbjct: 78 DGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 130
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 114 MLGAAGIFIPEFLTKIGIL---NTPSWYS------AGEVEYFTDTTTLFIVELFFIGWAE 164
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 165 GRRWADILKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + V +
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 266
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D ++++ E+ + R AML G F+ +T +G
Sbjct: 78 DGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 130
>gi|194689644|gb|ACF78906.1| unknown [Zea mays]
Length = 156
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ W+ AG Y+ D TLF++E+ L+G+AE
Sbjct: 1 MLGAAGIFIPEFLTKIGVL---NTPFWYT------AGEQQYFTDTTTLFIIELILIGWAE 51
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 52 GRRWADIIKPGSVNTDPIFPSNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 109
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 110 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 153
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ W+ AG Y+ D TLF++E+ L+G+AE
Sbjct: 115 MLGAAGIFIPEFLTKIGVL---NTPFWYT------AGEQQYFTDTTTLFIIELILIGWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 166 GRRWADIIKPGSVNTDPIFPSNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 224 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 267
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ W+ AG Y+ D TLF++E+ L+G+AE
Sbjct: 105 MLGAAGIFIPEFLTKIGVL---NTPFWYT------AGEQQYFTDTTTLFIIELILIGWAE 155
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 156 GRRWADIIKPGSVNTDPIFPSNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 213
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 214 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 257
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L G+I W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMVLPEVLTNYGII---NVPKWYD------AGKAEYFASSSTLFVIEFILFHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y D YPGG +FNPL + + + KE+
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPPNDVGYPGG-IFNPLNF----EPTLEAREKEIA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP+ N + H++DP +N ++ +L+
Sbjct: 207 NGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTLR 250
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL +D ++++ + E+ NGR AML + G + ++T G
Sbjct: 67 DGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYG 119
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ +G+AE
Sbjct: 115 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFVVELFFIGWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 166 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +S++ E+ + R AML G F+ +T +G
Sbjct: 79 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 131
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 116 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFIVELIFIGWAE 166
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 167 GRRWADILKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 224
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + V +
Sbjct: 225 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 268
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGL D +S++ + E+ + R AML G F+ +T +G
Sbjct: 80 DGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIG 132
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLFV+E+ +G+AE
Sbjct: 126 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFVVELFFIGWAE 176
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 177 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 234
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 235 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 278
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +S++ E+ + R AML G F+ +T +G
Sbjct: 90 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 142
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ W+ AG Y+ D TLF++EM L+G+AE
Sbjct: 113 MLGAAGIFIPEALTKLGIL---NTPFWYT------AGEQEYFTDQTTLFIVEMILLGWAE 163
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+P G G + +K+ + KE+
Sbjct: 164 GRRWADILKPGSVNTDPVFPNNKLTGT--DVGYPGGFWFDPFGWGTASPEKLKELRTKEI 221
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG P NLL HLADP + + ++
Sbjct: 222 KNGRLAMLAVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAF 265
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS PA+ G L F+PLGLG + + +K F E+ + R AML G F+ +
Sbjct: 66 WFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEAL 125
Query: 139 TGVG 142
T +G
Sbjct: 126 TKLG 129
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ W+ AG Y+ D TLF++EM L+G+AE
Sbjct: 113 MLGAAGIFIPEALTKLGIL---NTPFWYT------AGEQEYFTDQTTLFIVEMILLGWAE 163
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PGS+ K G D YPGG F+P G G + +K+ + KE+
Sbjct: 164 GRRWADILKPGSVNTDPVFPNNKLTGT--DVGYPGGFWFDPFGWGTASPEKLKELRTKEI 221
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG P NLL HLADP + + ++
Sbjct: 222 KNGRLAMLAVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAF 265
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS PA+ G L F+PLGLG + + +K F E+ + R AML G F+ +
Sbjct: 66 WFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEAL 125
Query: 139 TGVG 142
T +G
Sbjct: 126 TKLG 129
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 94/165 (56%), Gaps = 13/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALMGF 58
MLGA G I I K GL P+ W+ G V+ ++ TL V++ LMG+
Sbjct: 80 MLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVEKNNIDF----PTLMVIQFYLMGW 130
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLK 117
AE +R+ D+ NPGS FLGF + G + YPGG F+P+GL + D +++K K
Sbjct: 131 AETKRWYDFKNPGSQADGSFLGFTEEFKGL-ENGYPGGRFFDPMGLSRGDAAKYQEYKQK 189
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
EVKNGRLAM+A LG+ Q TG GP NL DHLADP + N T+
Sbjct: 190 EVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFATN 234
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 94/165 (56%), Gaps = 13/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALMGF 58
MLGA G I I K GL P+ W+ G V+ ++ TL V++ LMG+
Sbjct: 80 MLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVEKNNIDF----PTLMVIQFYLMGW 130
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLK 117
AE +R+ D+ NPGS FLGF + G + YPGG F+P+GL + D +++K K
Sbjct: 131 AETKRWYDFKNPGSQADGSFLGFTEEFKGL-ENGYPGGRFFDPMGLSRGDAAKYQEYKQK 189
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
EVKNGRLAM+A LG+ Q TG GP NL DHLADP + N T+
Sbjct: 190 EVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFATN 234
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 115 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFIVELFFIGWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 166 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 126 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFIVELFFIGWAE 176
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 177 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 234
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 235 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 278
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 93/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTKFGII---NAPQWYD------AGKSEYFASSSTLFVIEFILFHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPG + + F++Y + YPG +FNPL ++ K KE+
Sbjct: 154 IRRWQDIKNPGCVNQDPI--FKQYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ +++
Sbjct: 207 NGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTIR 250
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y PG F+PLGL +D ++++ + E+ NGR AML + G + +
Sbjct: 55 EWLPGLASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEV 114
Query: 138 VTGVG 142
T G
Sbjct: 115 FTKFG 119
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G++ W+ AG Y+A TLFV+E L + E
Sbjct: 101 MLGVAGMLLPEVFTSIGIL---NVPKWYD------AGKAEYFASSSTLFVIEFILFHYVE 151
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPG + + F+ Y + YPGG +FNPL E++ K KE+
Sbjct: 152 IRRWQDIKNPGCVNQDPI--FKNYSLPPNECGYPGG-IFNPLNFAATEEA----KEKELA 204
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP+ NLL HL+DP +N ++ +L
Sbjct: 205 NGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 248
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY PG F+PLGL +D +++K + E+ NGR AML + G + +
Sbjct: 53 EWLPGLASPAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEV 112
Query: 138 VTGVG 142
T +G
Sbjct: 113 FTSIG 117
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 112 MLGAAGIFIPEFLTKIGVL---NTPSWYS------AGELEYFTDTTTLFIVELFFIGWAE 162
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +KD + KE+
Sbjct: 163 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGTGSPQKIKDLRTKEI 220
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + T GP NL HLADP + + +
Sbjct: 221 KNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLADPGHATIFAAF 264
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D PG F+PLGLG D +S++ E+ + R AML G F+ +T +G
Sbjct: 76 DGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 128
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 91/164 (55%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGLI A W+ A Y+A TLFV+E L + E
Sbjct: 99 MLGVAGMLIPEVLTKAGLI---NAPQWYD------ASKSEYFASSSTLFVVEFILFHYVE 149
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 150 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELA 202
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VTG GP+ NLL HL+DP +N ++ +
Sbjct: 203 NGRLAMLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 246
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P+Y G L F+PLGL +D ++++ F E+ NGR AML + G + +
Sbjct: 51 EWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEV 110
Query: 138 VTGVG 142
+T G
Sbjct: 111 LTKAG 115
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 93/163 (57%), Gaps = 16/163 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G+I W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y +G+ YPGG +FNPL ++ K KE+
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPLNFAPTLEA----KEKEIA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAMLA LG+ +Q VTG GP+ NLL H++DP +N ++ +L
Sbjct: 207 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y PG F+PLGL +D ++++ F E+ NGR AML + G + +
Sbjct: 55 EWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEV 114
Query: 138 VTGVG 142
T +G
Sbjct: 115 FTSIG 119
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 102 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPG + + F++Y + YPGG +FNPL ++ K KE+
Sbjct: 153 IRRWQDIKNPGCVNQDPI--FKQYSLPPNECGYPGG-IFNPLNFAPTIEA----KEKELA 205
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VTG GP++NLL H++DP +N ++ +
Sbjct: 206 NGRLAMLAFLGFVIQHNVTGKGPFENLLQHISDPWHNTIVQTFS 249
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P+Y G L F+PLGL +D ++++ F E+ NGR AML + G + +
Sbjct: 54 EWLPGLPSPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEV 113
Query: 138 VTGVG 142
T +G
Sbjct: 114 FTKIG 118
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 91/163 (55%), Gaps = 16/163 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPG + + F++Y + YPGG +FNPL ++ K KE+
Sbjct: 154 IRRWQDIKNPGCVNQDPI--FKQYSLPPNECGYPGG-IFNPLNFAPTLEA----KEKEIA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAMLA LG+ VQ VTG GP+ NLL H++DP +N ++ +
Sbjct: 207 NGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTF 249
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 84 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
YL GS PG F+PLGL +D ++++ + E+ NGR AML + G + + T +G
Sbjct: 65 YLNGS----LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIG 119
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L GLI W+ AG Y+A TLFV+E L + E
Sbjct: 102 MLGVAGMLIPEVLTSIGLI---NVPKWYD------AGKVEYFASSSTLFVIEFILFHYVE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + F++Y + YPGG +FNPL ++ K KE+
Sbjct: 153 LRRWQDIKYPGSVNQDPL--FKQYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELA 205
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP+ NLL HL+DP +N ++ +L+
Sbjct: 206 NGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLQ 249
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 62 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKL 116
RR + +NP ++L G P+Y G L F+PLGL +D +S+K +
Sbjct: 33 RRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQ 92
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVG 142
E+ NGR AML + G + ++T +G
Sbjct: 93 AELVNGRWAMLGVAGMLIPEVLTSIG 118
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PEIL K G + +W+ AG+ Y+ADP TLF++++ALMG+ E
Sbjct: 112 MLGVSGILIPEILEKIGYV---KNFSWYN------AGSVEYFADPTTLFIVQLALMGWVE 162
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D NPGS+ + L D YPGG F+P+ G+ + + + KE+
Sbjct: 163 GRRWADIVNPGSVDIEPKL--PNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEI 220
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA LG+ Q + G P NL+ HLADP + N+ ++
Sbjct: 221 KNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAF 264
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL-- 147
D + PG F+PLGLG D + +K E+ + R AML + G + ++ +G +N
Sbjct: 76 DGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSW 135
Query: 148 -----LDHLADPVN 156
+++ ADP
Sbjct: 136 YNAGSVEYFADPTT 149
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 93/165 (56%), Gaps = 13/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALMGF 58
MLGA G I I K GL P+ W+ G V+ ++ TL V++ LMG+
Sbjct: 80 MLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVEKNNIDF----PTLIVIQFYLMGW 130
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLK 117
AE +R+ D+ NPGS FLGF + G + YPGG F+P+GL + D ++K K
Sbjct: 131 AETKRWYDFKNPGSQADGSFLGFTEEFKGL-ENGYPGGRFFDPMGLSRGDAAKYAEYKQK 189
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
EVKNGRLAM+A LG+ Q TG GP NL DHLADP + N T+
Sbjct: 190 EVKNGRLAMIACLGFAAQYAATGKGPLDNLSDHLADPNHINFATN 234
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 91/164 (55%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I W+ AG Y+A TLFV+E L + E
Sbjct: 102 MLGVAGMLLPEVFTKIGII---NVPKWYD------AGKEEYFASSSTLFVIEFILFHYVE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y + YPGG +FNPL ++ K KE+
Sbjct: 153 IRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTLEA----KEKELA 205
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VTG GP+ NLL HL+DP +N ++ +
Sbjct: 206 NGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 249
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY PG F+PLGL +D +++K F E+ NGR AML + G + +
Sbjct: 54 EWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 113
Query: 138 VTGVG 142
T +G
Sbjct: 114 FTKIG 118
>gi|255638199|gb|ACU19413.1| unknown [Glycine max]
Length = 156
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 1 MLGAAGIFIPEFLTKIGVL---NTPSWYS------AGELEYFTDTTTLFIVELFFIGWAE 51
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + K G D YPGG F+PLG G + +KD + KE+
Sbjct: 52 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGTGSPQKIKDLRTKEI 109
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + T GP NL HLADP + + +
Sbjct: 110 KNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLADPGHATIFAAF 153
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 92/164 (56%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L GLI W+ AG Y+A TLFV+E L + E
Sbjct: 95 MLGVAGMLIPEVLTSIGLI---NVPKWYD------AGKVEYFASSSTLFVIEFILFHYVE 145
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + F++Y + YPGG +FNPL ++ K KE+
Sbjct: 146 LRRWQDIKYPGSVNQDPL--FKQYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELA 198
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP+ NLL HL+DP +N ++ +L+
Sbjct: 199 NGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLQ 242
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 62 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKL 116
RR + +NP ++L G P+Y PG F+PLGL +D +S+K +
Sbjct: 26 RRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQ 85
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVG 142
E+ NGR AML + G + ++T +G
Sbjct: 86 AELVNGRWAMLGVAGMLIPEVLTSIG 111
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 91/163 (55%), Gaps = 16/163 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ + G+I W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTQIGII---NVPKWYD------AGKQEYFASSSTLFVIEFILFHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y + YPGG +FNPL ++ K KE+
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTAEA----KEKELA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAMLA LG+ VQ VTG GP+ NLL HL+DP +N ++ +
Sbjct: 207 NGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 249
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY PG F+PL L +D +++K F E+ NGR AML + G + +
Sbjct: 55 EWLPGLASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 114
Query: 138 VTGVG 142
T +G
Sbjct: 115 FTQIG 119
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 89/164 (54%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G++ W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTSIGIL---NVPKWYD------AGKSEYFASSSTLFVIEFILFHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y YPGG +FNPL E++ K KE+
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKSYSLPPNKCGYPGG-IFNPLNFAPTEEA----KEKELA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP+ NLL HL DP +N ++ +L
Sbjct: 207 NGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLFDPWHNTIIQTLS 250
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y PG F+PLGL +D +++K F E+ NGR AML + G + +
Sbjct: 55 QWLPGLASPDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEV 114
Query: 138 VTGVG 142
T +G
Sbjct: 115 FTSIG 119
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 12/167 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML A G + PE L + G I WF AGT Y+ADP TLFV+++ LMG+ E
Sbjct: 106 MLAAAGILIPEWLERLGFIDN---FNWFD------AGTREYFADPTTLFVVQLILMGWIE 156
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + L + D YPGG F+P G+ + + + KE+
Sbjct: 157 GRRWADMIKPGCVDIDPKLPHKTK--PKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEI 214
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA +G++ Q + TG GP NL+ H+ADP + N+ ++ H
Sbjct: 215 KNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS P + G L F+PLGLG D +S+K F E+ +GR AMLA G + +
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWL 118
Query: 139 TGVGPYQNL-------LDHLADPVN 156
+G N ++ ADP
Sbjct: 119 ERLGFIDNFNWFDAGTREYFADPTT 143
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 91/164 (55%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 102 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPG + + F++Y + YPGG +FNPL ++ K KE+
Sbjct: 153 IRRWQDIKNPGCVNQDPI--FKQYSLPPNECGYPGG-IFNPLNFAPTIEA----KEKELA 205
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VTG GP+ NLL H++DP +N ++ +
Sbjct: 206 NGRLAMLAFLGFVIQHNVTGKGPFDNLLQHISDPWHNTIVQTFS 249
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P+Y PG F+PLGL +D ++++ F E+ NGR AML + G + +
Sbjct: 54 EWLPGLPSPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEV 113
Query: 138 VTGVG 142
T +G
Sbjct: 114 FTKIG 118
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 12/167 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML A G + PE L + G I WF AGT Y+ADP TLFV+++ LMG+ E
Sbjct: 106 MLAAAGILIPEWLERLGFIDN---FNWFD------AGTREYFADPTTLFVVQLILMGWIE 156
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D PG + L + D YPGG F+P G+ + + + KE+
Sbjct: 157 GRRWADMIKPGCVDIDPKLPHKTK--PKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEI 214
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
KNGRLAMLA +G++ Q + TG GP NL+ H+ADP + N+ ++ H
Sbjct: 215 KNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS P + G L F+PLGLG D +S+K F E+ +GR AMLA G + +
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWL 118
Query: 139 TGVGPYQNL-------LDHLADPVN 156
+G N ++ ADP
Sbjct: 119 ERLGFIDNFNWFDAGTREYFADPTT 143
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 87/156 (55%), Gaps = 13/156 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 114 MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 164
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D NPG + K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 165 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLL-DHLADP 154
KNGRLAMLA++G + Q + TG GP NL HLADP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP 258
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +S++ E+ + R AML G F+ +T +G
Sbjct: 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLG 130
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + LG DP YPGG F+PLGL +D ++
Sbjct: 165 QVVLMGAVEGYRVAG----------------EPLGEVVDPLYPGGS-FDPLGLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ LVTG GP +NL DHLADPVNNN +
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWS 257
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 93/165 (56%), Gaps = 14/165 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE+L + G I +W+ AGT Y+ DP TLFV++M LMG+ E
Sbjct: 106 MLAVFGILVPELLERIGYIEN---FSWYD------AGTREYFVDPTTLFVVQMGLMGWVE 156
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D NPGS+ + + D YPGG F+P+ G G E M + KE
Sbjct: 157 GRRWADIVNPGSVDIEPKV--PHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMV-LRTKE 213
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNG LAMLA +G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 214 IKNGGLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
D + PG F+PLGLG D + +K F E+ + R AMLA+ G V L+ +G +N
Sbjct: 70 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELLERIGYIENF 127
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E+ WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILAKNGVKFGESV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHLADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLLDHLADPVANNA 254
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLAEDPEAF 215
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 263
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 94/175 (53%), Gaps = 26/175 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
+LGA+G + PEIL + G+ A WF+ G I G NY +P + +
Sbjct: 99 LLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAV 158
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R A PG G D YPGGP F+PLGL D +
Sbjct: 159 QVIVMGAAEGFRANGEA-PGVEGL--------------DTLYPGGP-FDPLGLADDPDTF 202
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM A G+FVQ +VTG GP QNL DHLADP VNN ++ KF
Sbjct: 203 AELKVKEIKNGRLAMFACFGFFVQAIVTGKGPIQNLEDHLADPGVNNAFASATKF 257
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 91/164 (55%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K GLI A W+ AG Y+A TLFV+E L + E
Sbjct: 96 MLGVAGMLLPEVLTKIGLI---DAPQWYD------AGKATYFASSNTLFVIEFILFHYVE 146
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
R++QD NPG + + F+ Y S + YPG +FNPL + + K KE+
Sbjct: 147 IRQWQDIKNPGCVNQDPI--FKSYRLPSDECGYPGS-VFNPLNF----EPTLEAKEKELA 199
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VT GP+ NLL HL+DP +N ++ +L
Sbjct: 200 NGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 84 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
YL GS PG F+PLGL +D ++++ F E+ NGR AML + G + ++T +G
Sbjct: 58 YLNGS----LPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIG 112
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 95/172 (55%), Gaps = 27/172 (15%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 50
+LGA+G + PE+L + AG+ Q WF+ G I AG NY + +
Sbjct: 91 LLGALGILTPELLSQYAGV--QFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLA 148
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
+++ LMG AE R AN GS G FL D YPGGP F+PLGL D +
Sbjct: 149 VQVVLMGLAEAYR----ANGGSEG---FLD-------DLDTLYPGGP-FDPLGLADDPDT 193
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP NN S
Sbjct: 194 FAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNNAFAS 245
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 93/167 (55%), Gaps = 25/167 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
+LGA+G + PE L ++G + A WF+ G I NY +P + +
Sbjct: 94 LLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLA 153
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ L+G AE R+ E + SGD YPGG F+PLGLG D +++
Sbjct: 154 QIVLVGTAEAYRYAG---------------EGPVDTSGDKLYPGG-FFDPLGLGDDPEAL 197
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLA +++ G+FVQ LVTG GP +NL DHLADP NNN
Sbjct: 198 AELKVKEIKNGRLAQVSVFGFFVQALVTGKGPLENLDDHLADPWNNN 244
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 90/164 (54%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K GLI A W+ AG Y+A TLFV+E L + E
Sbjct: 96 MLGVAGMLLPEVLTKIGLI---DAPQWYD------AGKATYFASSSTLFVIEFILFHYVE 146
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPG + + F+ Y + YPG +FNPL + + K KE+
Sbjct: 147 IRRWQDIKNPGCVNQDPI--FKSYSLPPHECGYPGS-VFNPLNF----EPTLEAKEKELA 199
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VT GP+ NLL HL+DP +N ++ +L
Sbjct: 200 NGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 84 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
YL GS PG F+PLGL +D ++++ F E+ NGR AML + G + ++T +G
Sbjct: 58 YLNGS----LPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIG 112
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 27 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 84
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 85 QVVLMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 127
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 128 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 166 QVVLMGAIEGYRVA--GGP--------------LGEVTDPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 90/164 (54%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K GLI A W+ AG Y+A TLFV+E L + E
Sbjct: 96 MLGVAGMLLPEVLTKIGLI---DAPQWYD------AGKATYFASSSTLFVIEFILFHYVE 146
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPG + + F+ Y + YPG +FNPL + + K KE+
Sbjct: 147 IRRWQDIKNPGCVNQDPI--FKSYSLPPHECGYPGS-VFNPLNF----EPTLEAKEKELA 199
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VT GP+ NLL HL+DP +N ++ +L
Sbjct: 200 NGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 84 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
YL GS PG F+PLGL +D ++++ F E+ NGR AML + G + ++T +G
Sbjct: 58 YLNGS----LPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIG 112
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGG-AFDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNA 254
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E + WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGE--VVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E+ WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILAKNGVKFGESV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ ++TG GP +NLLDHLADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIITGKGPIENLLDHLADPVANNA 254
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 97/177 (54%), Gaps = 24/177 (13%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+G + PE+L GL+ W++ G G +Y P +
Sbjct: 1 MLAALGVVVPELLDLFGLV-HFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIA 59
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGGPLF+PLGL KD
Sbjct: 60 ICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGPLFDPLGLSKDPV 109
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+ +D K+KE+KNGRLAM+A G+++Q VTG GP QNL++HL+DP+NNN+L+S FH
Sbjct: 110 AFEDLKVKEIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILSS--FH 164
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 92/165 (55%), Gaps = 17/165 (10%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMG 57
MLG G APE+L G+ +P W A YN Y+A TLF ++M +M
Sbjct: 86 MLGVAGMAAPELLTMFGVSDLPN-----WHD------APFYNGYFASSTTLFTVQMFMMN 134
Query: 58 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
+AE RR+QD NPGS+ K +GD YPGG +FNP+ GK +K K K
Sbjct: 135 WAEIRRWQDIKNPGSVSEDPAFPGNKL--PAGDVGYPGG-IFNPMNYGKSTDELKALKAK 191
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
E+ NGRLAM+A LG F+Q TGVGP +NL HL++P NNV +
Sbjct: 192 EIANGRLAMVAALGCFIQYDHTGVGPVENLTSHLSNPGVNNVFKA 236
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE GLI +W+ AG+ Y+ADP TL V ++ALMG+ E
Sbjct: 110 MLAVAGILLPEWFESLGLIQN---FSWYD------AGSREYFADPTTLLVAQLALMGWVE 160
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D NPGS+ L +K D YPGG F+P+ G G E M + KE
Sbjct: 161 GRRWADLVNPGSVDVDLKLPHKK--KAKADVGYPGGFWFDPMMWGRGSPEPVMV-LRTKE 217
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+KNGRLAMLA +G + Q + TG GP +NL H+ADP + N+ ++
Sbjct: 218 IKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 263
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL-- 147
D + PG F+PLGLG D +++K F E+ + R AMLA+ G + +G QN
Sbjct: 74 DGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSW 133
Query: 148 -----LDHLADPVN 156
++ ADP
Sbjct: 134 YDAGSREYFADPTT 147
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE+L G +AW+ AG + Y+A +LF ++M L +AE
Sbjct: 108 MLAVAGILVPELLTNIGFSWPGAGVAWYD------AGKFQYFAPASSLFGVQMLLFAWAE 161
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD+ PGS + K G+ +P YPGG +F+P G K + MK K KE+K
Sbjct: 162 LRRYQDFVKPGSANQDPIFSNNKLPDGN-EPGYPGG-IFDPFGWSKGD--MKSLKTKEIK 217
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
NGRLAMLA G+ Q TG P +NL HLADP V
Sbjct: 218 NGRLAMLAFAGFAAQAYTTGTTPLKNLATHLADPWATTV 256
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
L G D PG F+PL LG + +K + E+ + R AMLA+ G V L+T +G
Sbjct: 67 LPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 166 QVVLMGAIEGYRVA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL+DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLVDHLADPVNNNA 256
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++ +
Sbjct: 84 MLGALGCVFPEVLSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAV 141
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 142 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGG-AFDPLGLADDPDAF 184
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 185 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNA 232
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 97/177 (54%), Gaps = 24/177 (13%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+G + PE+L GL+ W++ G G +Y P +
Sbjct: 152 MLAALGVVVPELLDLFGLV-HFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIA 210
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGGPLF+PLGL KD
Sbjct: 211 ICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGPLFDPLGLSKDPV 260
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+ +D K+KE+KNGRLAM+A G+++Q VTG GP QNL++HL+DP+NNN+L+S FH
Sbjct: 261 AFEDLKVKEIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILSS--FH 315
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 166 QVILMGAIEGYRVA--GGP--------------LGEVTDPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 215
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLTDHLADPVNNNA 263
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + LG DP YPGG F+PLGL +D ++
Sbjct: 166 QVVLMGAVEGYRVAG----------------EPLGEVVDPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 166 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE+L G +AW+ AG + Y+A +LF ++M L +AE
Sbjct: 108 MLAVAGILVPELLTNIGFSWPGAGVAWYD------AGKFQYFAPASSLFGVQMLLFAWAE 161
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD+ PGS + K G+ +P YPGG +F+P G K + MK K KE+K
Sbjct: 162 LRRYQDFVKPGSANQDPIFSNNKLPDGN-EPGYPGG-IFDPFGWSKGD--MKSLKTKEIK 217
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
NGRLAMLA G+ Q TG P +NL HLADP V
Sbjct: 218 NGRLAMLAFAGFAAQAYTTGTTPLKNLATHLADPWATTV 256
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D PG F+PL LG + +K + E+ + R AMLA+ G V L+T +G
Sbjct: 72 DGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 166 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KEVKNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAT 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++LG+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKELKNGRLAMFSMLGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 91/164 (55%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 96 MLGVAGMLLPEVLTKIGII---NAPLWYD------AGKSTYFASSSTLFVIEFILFHYVE 146
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPG + + F+ Y + YPG +FNPL + + K KE+
Sbjct: 147 IRRWQDIKNPGCVNQDPI--FKNYSLPPHECGYPGS-VFNPLNF----EPTLEAKEKELA 199
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA L + VQ +TG GP++NLL HL+DP +N ++ +L
Sbjct: 200 NGRLAMLAFLAFMVQHGITGKGPFENLLQHLSDPWHNTIIQTLS 243
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY G L F+PLGL +D ++++ + E+ N R AML + G + +
Sbjct: 48 EWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEV 107
Query: 138 VTGVG 142
+T +G
Sbjct: 108 LTKIG 112
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 166 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+G G + PE+L K G+I A W+ AG Y+A TLFV+E + + E
Sbjct: 99 MVGVAGMLIPEVLTKIGVI---NAPLWYD------AGKVEYFAPASTLFVIEFLMFHYVE 149
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + F+ Y + YPGG +FNPL +E ++K KE+
Sbjct: 150 VRRWQDIKYPGSVNQDPI--FKGYSLPPNEVGYPGG-IFNPLNFPANE----EYKEKELA 202
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VT GP++NLL HL+DP ++ ++ S++
Sbjct: 203 NGRLAMLAFLGFIIQSNVTHQGPFENLLTHLSDPWHHTIVQSIQ 246
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 84 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
YL GS PG F+PLGL D ++K + E++NGR AM+ + G + ++T +G
Sbjct: 61 YLNGS----LPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIG 115
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 257
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+ + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELFARNGIKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 166 QVVLMGAVEGYRVAG----GPLGEVI------------DPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAT 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 166 QVVLMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 166 QVVLMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 256
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 165 QVILMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM +I G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKELKNGRLAMFSIFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+G G + PE+L K G+I A W+ AG Y+A TLFV+E + + E
Sbjct: 99 MVGVAGMLIPEVLTKIGVI---NAPLWYD------AGKVEYFAPASTLFVIEFLMFHYVE 149
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + F+ Y + YPGG +FNPL +E ++K KE+
Sbjct: 150 VRRWQDIKYPGSVNQDPI--FKGYSLPPNEVGYPGG-IFNPLNFPANE----EYKEKELA 202
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ +Q VT GP++NLL HL+DP ++ ++ S++
Sbjct: 203 NGRLAMLAFLGFIIQSNVTHQGPFENLLTHLSDPWHHTIVQSIQ 246
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 84 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
YL GS PG F+PLGL D ++K + E++NGR AM+ + G + ++T +G
Sbjct: 61 YLNGS----LPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIG 115
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 109 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 167 QVILMGAVEGYRVA--GGP--------------LGDVTDPIYPGGS-FDPLGLADDPDTF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 257
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 91/166 (54%), Gaps = 14/166 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE GLI +W+ AG+ Y+ADP TL V ++ALMG+ E
Sbjct: 110 MLAVAGILLPEWFESLGLIQN---FSWYD------AGSREYFADPTTLLVAQLALMGWVE 160
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D NPGS+ L +K D YPGG F+P+ G G E M + KE
Sbjct: 161 GRRWADLVNPGSVDVDLKLPHKK--KAMADVGYPGGFWFDPMMWGRGSPEPVMV-LRTKE 217
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+KNGRLAMLA +G + Q + TG GP +NL H+ADP + N+ ++
Sbjct: 218 IKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 263
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL-- 147
D + PG F+PLGLG D +++K F E+ + R AMLA+ G + +G QN
Sbjct: 74 DGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSW 133
Query: 148 -----LDHLADPVN 156
++ ADP
Sbjct: 134 YDAGSREYFADPTT 147
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 97 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAT 154
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +++
Sbjct: 155 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAL 197
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 198 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 245
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 166 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 20 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 77
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 78 QVVLMGAVEGYRIA--GGP--------------LGEITDPLYPGGS-FDPLGLADDPEAF 120
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 121 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 167
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 166 QVVLMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 256
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 166 QVVLMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 256
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 164 QVILMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAS 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 SELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P ++
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGLADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
D K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 ADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 267
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGG-AFDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 164 QVILMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 109 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 167 QVVLMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 257
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 166 QVILMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 256
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 166 QVVLMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 256
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGAVEGYRVA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDAEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 92/167 (55%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 159
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 160 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 202
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 203 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 250
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 111 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAT 168
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 169 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 211
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 212 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 259
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PEIL K G + +W+ AG+ Y+ADP TLF++++ALMG+ E
Sbjct: 112 MLGVSGILIPEILEKIGYV---KNFSWYN------AGSVEYFADPTTLFIVQLALMGWVE 162
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 119
RR+ D NPGS+ + L D YPGG F+P+ G+ + + + KE+
Sbjct: 163 GRRWADIVNPGSVDIEPKL--PNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEI 220
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
KNGRLAMLA LG+ Q + G P NL+ HLADP
Sbjct: 221 KNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL-- 147
D + PG F+PLGLG D + +K E+ + R AML + G + ++ +G +N
Sbjct: 76 DGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSW 135
Query: 148 -----LDHLADPVN 156
+++ ADP
Sbjct: 136 YNAGSVEYFADPTT 149
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 166 QVVLMGAIEGYRVA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL+DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNA 256
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAIEGYRVAG----GPLGEVV------------DPLYPGG-TFDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
D K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 ADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 90 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 147
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 148 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 190
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 238
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 164 QVILMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 166 QVILMGAIEGYRVAG----GPLGEVI------------DPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 166 QVILMGAVEGYRVA--GGP--------------LGEITDPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWS 258
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 166 QVILMGAVEGYRVA--GGP--------------LGDVTDPIYPGGS-FDPLGLADDPDTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 256
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNNA 253
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 164 QVILMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRVA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 166 QVILMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 162 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E+ WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILAKNGVKFGESV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLA ++ G+FVQ +VTG GP +NLLDHLADPV NN
Sbjct: 207 AELKVKELKNGRLATFSMFGFFVQAIVTGKGPVENLLDHLADPVANNA 254
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 89/163 (54%), Gaps = 16/163 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G++ W+ AG Y+A TLFV+E L + E
Sbjct: 52 MLGVAGMLLPEVFTNIGIL---NVPKWYD------AGKEEYFASSSTLFVIEFILFHYVE 102
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPGG +FNPL ++ K KE+
Sbjct: 103 IRRWQDIKNPGSVNQXPI--FKNYSLPPNEVGYPGG-IFNPLNFAPTAEA----KEKEIA 155
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAMLA LG+ VQ V G GP+ NLL HL+DP +N ++ +L
Sbjct: 156 NGRLAMLAFLGFIVQHNVVGKGPFDNLLQHLSDPWHNTIVQTL 198
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y PG F PLGL +D +++K F E+ N R AML + G + +
Sbjct: 4 QWLPGLASPTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLPEV 63
Query: 138 VTGVG 142
T +G
Sbjct: 64 FTNIG 68
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 89/164 (54%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K GLI A W+ AG Y+A TLFV+E L E
Sbjct: 96 MLGVAGMLLPEVLTKIGLI---DAPQWYD------AGKATYFASSSTLFVIEFILFHSVE 146
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPG + + F+ Y + YPG +FNPL + + K KE+
Sbjct: 147 IRRWQDIKNPGCVNQDPI--FKSYSLPPHECGYPGS-VFNPLNF----EPTLEAKEKELA 199
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VT GP+ NLL HL+DP +N ++ +L
Sbjct: 200 NGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 84 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
YL GS PG F+PLGL +D ++++ F E+ NGR AML + G + ++T +G
Sbjct: 58 YLNGS----LPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIG 112
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGIVFPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSVFGFFVQAIVTGKGPIQNLYDHVADPVANNA 254
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 162 QVVLMGFVEGYRIG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNNA 252
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 162 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNNA 252
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 74 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 131
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 132 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 174
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 175 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 222
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCIFPELLSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGFIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN +
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANNAWS 255
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ Q WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGV--QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 47 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 104
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 105 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 147
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 148 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 195
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L G I W+ AG Y+A TLFV+E L + E
Sbjct: 102 MLGVAGMLIPEVLTSFGFI---DVPKWYD------AGKVEYFASSSTLFVIEFILFHYVE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + F+ Y + YPGG +FNPL ++ K KE+
Sbjct: 153 LRRWQDIKYPGSVNQDPV--FKNYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELA 205
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ + +
Sbjct: 206 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIIQTFQ 249
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 62 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKL 116
RR + +NP ++L G P Y G L F+PLGL +D +S+K +
Sbjct: 33 RRVRPGSNPAPARSFKVEAKGEWLPGLSSPTYLNGSLPGDNGFDPLGLAEDPESLKWYVQ 92
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVG 142
E+ NGR AML + G + ++T G
Sbjct: 93 AELVNGRWAMLGVAGMLIPEVLTSFG 118
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L G I W+ AG Y+A TLFV+E L + E
Sbjct: 102 MLGVAGMLIPEVLTSFGFI---DVPKWYD------AGKVEYFASSSTLFVIEFILFHYVE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + F+ Y + YPGG +FNPL ++ K KE+
Sbjct: 153 LRRWQDIKYPGSVNQDPV--FKNYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELA 205
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ + +
Sbjct: 206 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIIQTFQ 249
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 62 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKL 116
RR + +NP ++L G P Y G L F+PLGL +D S+K +
Sbjct: 33 RRVRPGSNPAPARSFKVEAKGEWLPGLSSPTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQ 92
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVG 142
E+ NGR AML + G + ++T G
Sbjct: 93 AELVNGRWAMLGVAGMLIPEVLTSFG 118
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 162 QVILMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 205 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 252
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAS 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 166 QVILMGAVEGYRVA--GGP--------------LGDVTDPIYPGGS-FDPLGLADDPDTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 256
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAS 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 165 QVILMGAVEGYRVA--GGP--------------LGDVTDPIYPGGS-FDPLGLADDPDTF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 255
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 93/168 (55%), Gaps = 26/168 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P ++ +
Sbjct: 105 MLGALGCITPELLQKYSRVTLKEPV-WFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G YPGG F+PLGL D +++
Sbjct: 164 QVVLMGAVEAYRTNGL--PGV--------------GEGGDLYPGGKYFDPLGLADDPETL 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHLA+PV+NN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLANPVSNNA 255
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE+L G +AW+ AG + Y+A +LF ++M L + E
Sbjct: 108 MLAVAGILVPELLSNIGFSWPGAGVAWYD------AGKFEYFAPASSLFGVQMLLFAWVE 161
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD+ PGS + K G+ +P YPGG +F+P G K + +K KLKE+K
Sbjct: 162 IRRYQDFVKPGSANQDPIFTNNKLPDGN-EPGYPGG-IFDPFGWSKGD--IKSLKLKEIK 217
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
NGRLAMLA G+ Q TG P +NL HLADP + V
Sbjct: 218 NGRLAMLAFAGFIGQAYTTGTTPLKNLSTHLADPWSTTV 256
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDF 114
E R + D S G + ++ G+ P Y G L F+PL LG+D +K +
Sbjct: 37 EAREWIDAWKSKSGGAKRDAALPSWMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWY 96
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVG 142
E+ N R AMLA+ G V L++ +G
Sbjct: 97 AQAELMNARFAMLAVAGILVPELLSNIG 124
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE+L G +AW+ AG + Y+A +LF ++M L + E
Sbjct: 108 MLAVAGILVPELLSNIGFSWPGAGVAWYD------AGKFEYFAPASSLFGVQMLLFAWVE 161
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD+ PGS + K G+ +P YPGG +F+P G K + +K KLKE+K
Sbjct: 162 IRRYQDFVKPGSANQDPIFTNNKLPDGN-EPGYPGG-IFDPFGWSKGD--IKSLKLKEIK 217
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
NGRLAMLA G+ Q TG P +NL HLADP + V
Sbjct: 218 NGRLAMLAFAGFIGQAYTTGTTPLKNLSTHLADPWSTTV 256
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDF 114
E R + D S G + ++ G+ P Y G L F+PL LG+D +K +
Sbjct: 37 EAREWIDAWKSKSGGAKRDAALPSWMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWY 96
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVG 142
E+ N R AMLA+ G V L++ +G
Sbjct: 97 AQAELMNARFAMLAVAGILVPELLSNIG 124
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVA--GGP--------------LGEIVDPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KEVKNGRLAM ++ G+FVQ +VTG GP +NL DH+ADP+NNN
Sbjct: 208 AELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPINNN 254
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDAIYPGGA-FDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL+DHLADPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANNA 254
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 94/172 (54%), Gaps = 27/172 (15%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 50
+LGA+G + PE+L + AG+ Q WF+ G I G NY + +
Sbjct: 91 LLGALGILTPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLA 148
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
+++ LMG AE R AN GS G FL D YPGGP F+PLGL D +
Sbjct: 149 VQVVLMGLAEAYR----ANGGSEG---FLD-------DLDTLYPGGP-FDPLGLADDPDT 193
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP NN S
Sbjct: 194 FAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNNAFAS 245
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDAF 215
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 263
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDAF 215
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 263
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAF 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPANNNA 255
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVA--GGP--------------LGEIVDPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KEVKNGRLAM ++ G+FVQ +VTG GP +NL DH+ADP+NNN
Sbjct: 208 AELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPINNNA 255
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 92/167 (55%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 58
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 59 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 101
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 102 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 96 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 153
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 154 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 196
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 197 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 244
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGAVEGYRVA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDTF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 254
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVTPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 162 QVILMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 205 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 252
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 166 QVVLMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 255
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAF 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPANNNA 255
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ Q WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGV--QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGNGPIENLADHLADPVNNNA 254
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF G I G +Y +P ++
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAV--WFMAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 159
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 160 QVVLMGAVEGYRIA--GGP--------------LGEIVDPLYPGGS-FDPLGLADDPEAF 202
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 203 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 250
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 80 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAV 137
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 138 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 180
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 181 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 228
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 78 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAV 135
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 136 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 178
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 179 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 226
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 80 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAV 137
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 138 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 180
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 181 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 228
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 103 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 160
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 161 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 203
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 204 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 251
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 94/165 (56%), Gaps = 11/165 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G ++ ++L G++P W+ ++ Y A+ +LF+++M LMGF E
Sbjct: 93 MLGVAGMLSVDLL--QGILPDNVP-QWYDAPLLADV----YPAEWKSLFIIQMILMGFVE 145
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+ D PGS K L SG P YPGG +F+PLG K ++++ K KE++
Sbjct: 146 ARRWADINTPGSANVDPVFNNNK-LPDSGTPGYPGG-MFDPLGFSK--GNLEESKWKELR 201
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 165
NGRLAM+A LG F+Q TG P NL DHLADP +NNV L F
Sbjct: 202 NGRLAMVASLGMFIQYDATGKSPLTNLADHLADPWHNNVCALLPF 246
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMTSMFGFFVQAIVTGKGPVENLYDHVADPVANNA 254
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E+ WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLAKNGVKFGESV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNA 254
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 60 MLGALGCVFPEILSKNGIKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 117
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 118 QVVLMGFIEGYRVG--GGP--------------LGEGLDIIYPGGA-FDPLGLADDPDTA 160
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 161 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDHIADPVNNNA 208
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 80 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAV 137
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 138 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 180
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 181 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 228
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVILMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 34 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 91
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 92 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLAEDPEAF 134
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 135 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 181
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 73 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 130
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 131 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 174 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 221
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRIAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNA 255
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 8 MLGALGCTFPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 65
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 66 QVVLMGFVEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDAF 108
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLADPV NN
Sbjct: 109 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANN 155
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAC 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 162 QVVLMGFIEGYRVG--GGP--------------LGEGLDKIYPGG-AFDPLGLADDPDTA 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDHVADPVNNNA 252
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G++ PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGSVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAS 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 128 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 185
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 186 QVVLMGAVEGYRVA--GGP--------------LGEIVDPLYPGGS-FDPLGLADDPEAF 228
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 229 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNA 276
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 78 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAV 135
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 136 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 178
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 179 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 226
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 166 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 215
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV+NN
Sbjct: 216 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNNA 263
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 QVVLMGAVEGYRIA--GGP--------------LGKVTDPLYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGR AM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKEIKNGRSAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 253
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAT 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVLLMGAVEGYRIAG----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 89/164 (54%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G PE+L GLI W+ AG Y+A TLFV+E L + E
Sbjct: 102 MLGVAGMXIPEVLTSIGLI---NVPKWYD------AGKVEYFASSXTLFVIEFILFHYVE 152
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + + Y + YPGG +FNPL ++ K KE+
Sbjct: 153 LRRWQDIKYPGSVNQDPIX--KSYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELA 205
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP+ NLL HL+DP +N ++ +L+
Sbjct: 206 NGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLQ 249
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 62 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKL 116
RR + +NP ++L G P+Y PG +PLGL +D +S+K +
Sbjct: 33 RRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGXDPLGLAEDPESLKWYVQ 92
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVG 142
E+ NGR AML + G + ++T +G
Sbjct: 93 AELVNGRWAMLGVAGMXIPEVLTSIG 118
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 166 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+K +KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 209 AELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 22/174 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
MLGA+G + PE+L G++ W++ G G T +Y P +
Sbjct: 43 MLGALGVVVPELLDLFGIV-HFVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIA 101
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 102 ICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDLNYPGGALFDPLGLSKDPV 151
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ ++ K+KE+KNGRLAM+A LG++VQ VTG GP QNL++HL+DP++NN+L+S
Sbjct: 152 AFEELKVKEIKNGRLAMVAWLGFYVQAAVTGKGPVQNLIEHLSDPLHNNILSSF 205
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 25/170 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 154 MLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLS 212
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
+A+MG E R+ G GR+ D YPGGP F+PLGL D ++
Sbjct: 213 TLAIMGAVEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDAL 257
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP +NN+ +
Sbjct: 258 AELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 307
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 25/163 (15%)
Query: 8 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGF 58
+ PE+L G +P W++ G I A NY +P + F+ +A+MG
Sbjct: 391 VTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGA 449
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
E R+ G GR+ D YPGGP F+PLGL D ++ + K+KE
Sbjct: 450 VEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDALAELKVKE 494
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+KNGRLAM+A+LG++VQ LVT GP +NL HLADP +NN+ +
Sbjct: 495 LKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 537
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 149
D YPGGP F+PLGL D ++ + K+KE+KNGRLAM+A+LG++VQ LVT GP +NL
Sbjct: 2 DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTF 60
Query: 150 HLADPVNNNVLT 161
HLADP +NN+ +
Sbjct: 61 HLADPSSNNIFS 72
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 215
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV+NN
Sbjct: 216 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNNA 263
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 93/167 (55%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 164 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLKNLADHIADPVNNN 253
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 98/177 (55%), Gaps = 24/177 (13%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+G + PE+L GL+ W++ G G T +Y P +
Sbjct: 151 MLAALGVVIPELLDLFGLV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIA 209
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 210 ICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGALFDPLGLSKDPV 259
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+ +D K+KE+KNGRLAM+A LG+++Q VTG GP QNL++HL+DP++NN+L+S FH
Sbjct: 260 AFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNNILSS--FH 314
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 143 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 200
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 201 QVVLMGAIEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 243
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 244 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 291
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGG-AFDPLGLADDPEAC 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+K++KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKKIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 111 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWAC 168
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 169 QVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDAF 211
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 212 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 259
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P ++
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGLADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 267
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PL L +D ++
Sbjct: 164 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN +
Sbjct: 207 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 101 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 158
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 159 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 201
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 202 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 249
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWAC 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 162 QVILMGAVEGYRIGG----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 70 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 127
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 128 QVILMGAVEGYRVA--GGP--------------LGEVVDPLYPGGS-FDPLGLAEDPEAF 170
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 171 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 218
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNA 254
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNA 255
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G I PE L + G I +W+ AG+ Y+AD TLFV +M LMG+AE
Sbjct: 116 MLAVTGIIIPECLERLGFIEN---FSWYD------AGSREYFADSTTLFVAQMVLMGWAE 166
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D PGS+ + + + D YPGG F+ + G G E M + KE
Sbjct: 167 GRRWADLIKPGSVDIE--PKYPHKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMV-LRTKE 223
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA LG+ Q T P +NL+ HLADP + NV ++ H
Sbjct: 224 IKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 271
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
D + PG F+P GLG D ++K F E+ + R AMLA+ G + + +G +N
Sbjct: 80 DGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENF 137
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PL L +D ++
Sbjct: 164 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN +
Sbjct: 207 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 100 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 157
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 158 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 200
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 201 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 248
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 80 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAV 137
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 138 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 180
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 181 AEXKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 228
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAIEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVTPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVILMGAVEGYRVA--GGP--------------LGDVTDPIYPGGS-FDPLGLADDPDTF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 254
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 76 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 133
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 134 QVILMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 176
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 177 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 224
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 64 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 121
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 122 QVLLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 164
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 165 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 211
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + E LG + D YPGG F+PLGL D ++
Sbjct: 164 QVILMGAVEGYR---------------VAGEGPLGEAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+ + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 163 QVVLMGFVEGYRVG--GGP--------------LGEGLDAIYPGGA-FDPLGLADDPDAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNA 253
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNA 254
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PL L +D ++
Sbjct: 164 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN +
Sbjct: 207 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PL L +D ++
Sbjct: 164 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN +
Sbjct: 207 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAS 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 162 QVILMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 205 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANNA 252
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLG +G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 104 MLGGLGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 162 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGG-AFDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNA 254
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 255
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNA 253
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PL L +D ++
Sbjct: 164 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN +
Sbjct: 207 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 QVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLG D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGFADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 25/170 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 102 MLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLS 160
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
+A+MG E R+ G GR+ D YPGGP F+PLGL D ++
Sbjct: 161 TLAIMGAVEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDAL 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP +NN+ +
Sbjct: 206 AELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 255
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 74 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 131
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 132 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 174
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 175 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 222
>gi|125660620|gb|ABN49455.1| photosystem I chlorophyll a/b binding protein [Pisum sativum]
Length = 144
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 16/154 (10%)
Query: 10 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 69
PE+ G+I W+ AG Y+A TLFV+E L + E RR+QD N
Sbjct: 4 PEVFTSIGII---NVPKWYD------AGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKN 54
Query: 70 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 129
PGS+ + F++Y +G+ YPGG +FNPL ++ K KE+ NGRLAMLA
Sbjct: 55 PGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAF 107
Query: 130 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
LG+ +Q VTG GP+ NLL H++DP +N ++ +L
Sbjct: 108 LGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 141
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R E LG + D YPGG F+PLGL D ++
Sbjct: 164 QVILMGAVEGYRVAG---------------EGPLGEAEDLLYPGGS-FDPLGLAADPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G+I PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGSIFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRIA--GGP--------------LGEIVDPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIVDPVNNN 254
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAT 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNA 253
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 92/175 (52%), Gaps = 28/175 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G+ E WF+ G I + NY +P +
Sbjct: 87 MLGALGCVTPELLAKNGVSFGEAV--WFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLAC 144
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R + PG G D YPGGP F+PLGL D +
Sbjct: 145 QVILMGGAEAYR-ANGEGPGVEGL--------------DSLYPGGP-FDPLGLADDPDTF 188
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP VNN + KF
Sbjct: 189 AELKTKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNNGFAAATKF 243
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNA 253
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVILMGAVEGYRIGG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++ +
Sbjct: 105 MLGALGCVFPELLSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 163 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADPATNNA 253
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G++ PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 73 MLGALGSVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 130
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 131 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 174 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNA 255
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 58
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 59 QVVLMGAIEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 101
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 102 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNA 253
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 73 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 130
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 131 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 174 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KEVKNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPVNNN
Sbjct: 208 AELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNNA 255
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 93/168 (55%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG + DP YPGG F+PLGL +D ++
Sbjct: 164 QVILMGAVEGYRIAG-GPPGEVV---------------DPLYPGGS-FDPLGLAEDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 254
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 110 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 167
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 168 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 210
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 211 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 260
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRIAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWAT 58
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 59 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 101
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 102 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 148
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNA 254
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 103 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 160
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 161 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 203
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 204 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 251
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGF 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 164 QVVLMGLVEGYRIN--GLPGV--------------GDGNDLYPGGQYFDPLGLADDPVTF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHLADPV NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAA 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNA 254
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P +++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D +
Sbjct: 163 QVILMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLAEDPERS 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 103 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 160
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 161 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 203
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 204 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 251
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 22/174 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+G + PE+L G++ W++ G G T +Y P +
Sbjct: 82 MLAALGVVVPELLDLFGVV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIA 140
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 141 ICQALLMVGPEYARY--------CGIEALEPLGLYL--PGDINYPGGALFDPLGLSKDPV 190
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ +D K+KE+KNGRLAM+A LG+++Q VTG GP QNL++HL+DP++NN+L+S
Sbjct: 191 AFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSSF 244
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 93/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 165 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN +
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G I PE L + G I +W+ AG+ Y+AD TLFV +M LMG+AE
Sbjct: 115 MLAVTGIIIPECLERLGFIEN---FSWYD------AGSREYFADSTTLFVAQMVLMGWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D PGS+ + + + D YPGG F+ + G G E M + KE
Sbjct: 166 GRRWADLIKPGSVDIEP--KYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV-LRTKE 222
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA LG+ Q T P +NL+ HLADP + NV ++ H
Sbjct: 223 IKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
D + PG F+PLGLG D ++K F E+ + R AMLA+ G + + +G +N
Sbjct: 79 DGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENF 136
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K G+ Q WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCIFPELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNA 253
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNA 254
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGF 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 164 QVVLMGLVEGYRIN--GLPGV--------------GDGNDLYPGGQYFDPLGLADDPVTF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHLADPV NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 22/174 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+G + PE+L G++ W++ G G T +Y P +
Sbjct: 158 MLAALGVVVPELLDLFGVV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIA 216
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 217 ICQALLMVGPEYARY--------CGIEALEPLGLYL--PGDINYPGGALFDPLGLSKDPV 266
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ +D K+KE+KNGRLAM+A LG+++Q VTG GP QNL++HL+DP++NN+L+S
Sbjct: 267 AFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSSF 320
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G I PE L + G I +W+ AG+ Y+AD TLFV +M LMG+AE
Sbjct: 115 MLAVTGIIIPECLERLGFIEN---FSWYD------AGSREYFADSTTLFVAQMVLMGWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D PGS+ + + + D YPGG F+ + G G E M + KE
Sbjct: 166 GRRWADLIKPGSVDIEP--KYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV-LRTKE 222
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA LG+ Q T P +NL+ HLADP + NV ++ H
Sbjct: 223 IKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
D + PG F+PLGLG D ++K F E+ + R AMLA+ G + + +G +N
Sbjct: 79 DGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENF 136
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGG-AFDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+K GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKEIKKGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFREGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G +P YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------NPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 162 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANNA 254
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 90/171 (52%), Gaps = 28/171 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCDFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM + G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 207 AELKVKEIKNGRLAMFSTFGFFVQAIVTGKGPLENLADHLADPVNNNACPT 257
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 32 MLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 89
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R G +G D YPGG F+PLGL D +
Sbjct: 90 QVVLMGFVEGYR----VGGGPLGEGL------------DKVYPGGA-FDPLGLADDPDTA 132
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 133 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 179
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 91/165 (55%), Gaps = 17/165 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 96 MLGVAGVLVPEVLTKIGII---NAPQWYD------AGKSTYFASSSTLFVIEFILFHYVE 146
Query: 61 HRRFQDW-ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
RR+QD NPG + + F+ Y + YPG +FNPL + + K KE+
Sbjct: 147 IRRWQDIIKNPGCVNQDPI--FKNYSLPPHECGYPGS-VFNPLNF----EPTLEAKEKEL 199
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ +TG GP++NLL HL DP +N ++ +L
Sbjct: 200 ANGRLAMLAFLGFMVQHGITGKGPFENLLQHLFDPWHNTIIQTLS 244
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY G L F+PLGL +D ++++ + E+ N R AML + G V +
Sbjct: 48 EWLPGLASPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEV 107
Query: 138 VTGVG 142
+T +G
Sbjct: 108 LTKIG 112
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 94 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 151
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 152 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGG-AFDPLGLADDPDTF 194
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 195 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 241
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 1 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 58
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R G +G DP YPGG F+PL L +D ++
Sbjct: 59 QVVLMGFIEGYRIGG----GPLGEGL------------DPLYPGGA-FDPLNLAEDPEAF 101
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 102 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 148
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLG D ++
Sbjct: 166 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGPADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 101 MLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 158
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 159 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTA 201
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 202 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 101 MLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 158
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 159 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTA 201
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 202 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 87/164 (53%), Gaps = 16/164 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K GLI A W+ AG Y+A TLFV+E L + E
Sbjct: 96 MLGVAGMLTPELLTKIGLI---NAPEWYD------AGKSTYFASSSTLFVVEFILFHYVE 146
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PG + + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 147 IRRWQDIKEPGCVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKEIA 199
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ VTG GP NL HL+DP +N ++ +
Sbjct: 200 NGRLAMLAYLGFSVQHAVTGKGPLDNLFQHLSDPWHNTIIQTFS 243
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G PAY PG F+PLGL +D ++++ + E+ NGR AML + G L
Sbjct: 48 EWLPGLPSPAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPEL 107
Query: 138 VTGVG 142
+T +G
Sbjct: 108 LTKIG 112
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P ++
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGLADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 267
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE L G I WF AG Y+ADP TLF++++ LMG+ E
Sbjct: 142 MLAVAGILIPEWLESLGFIENYN---WFD------AGAREYFADPTTLFIVQLVLMGWVE 192
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D PG + + L D YPGG F+PL G G E M + KE
Sbjct: 193 GRRWADMIKPGCVDIEPTL--PNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVMV-LRTKE 249
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGRLAMLA +G+ Q + TG GP +NL+ H+ADP + N+ ++
Sbjct: 250 IKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAF 294
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS P + G L F+PLGLG D + +K F E+ + R AMLA+ G + +
Sbjct: 95 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPEWL 154
Query: 139 TGVGPYQNL-------LDHLADPVN 156
+G +N ++ ADP
Sbjct: 155 ESLGFIENYNWFDAGAREYFADPTT 179
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R LG DP YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYRVAGGP----------------LGEITDPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLTDPVNNNA 254
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 87 MLGALGCVFPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 144
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 145 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPEAF 187
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 188 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNA 235
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ Q WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSKNGV--QFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R G +G D YPGG F+PLGL D ++
Sbjct: 163 QVVLMGFVEGYR----VGGGPLGEDL------------DKLYPGGA-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL+DH+ADPV NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLVDHIADPVANNA 253
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 118 MLGALGCIFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 175
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPG F+PLGL D ++
Sbjct: 176 QVVLMGAVEGYRIA--GGP--------------LGEITDPLYPGNS-FDPLGLADDPEAF 218
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 219 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 266
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 25/170 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 191 MLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLS 249
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
+A+MG E R+ G GR+ D YPGGP F+PLGL D ++
Sbjct: 250 TLAIMGAVEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDAL 294
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP NN+ +
Sbjct: 295 AELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 344
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 25/170 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 652 MLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLS 710
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
+A+MG E R+ G GR+ D YPGGP F+PLGL D ++
Sbjct: 711 TLAIMGAVEAYRYG--GGVGDSGREL------------DTLYPGGP-FDPLGLANDPDAL 755
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP NN+ +
Sbjct: 756 AELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 805
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 91/169 (53%), Gaps = 25/169 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLG +G PE + + G +P + WF+ G I NY P + F+
Sbjct: 894 MLGVLGCWFPECINRWGGVPFGEPV-WFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFLS 952
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
+ LMG E R + GS+G G DP YPGGP F+PLGL D ++
Sbjct: 953 TLVLMGAVEAYR-----SAGSVGD---------FGADLDPLYPGGP-FDPLGLADDPEAF 997
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KEVKNGRLAM+AI G+FVQG++TG GP +N +DHL DP NN+
Sbjct: 998 LELKVKEVKNGRLAMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIF 1046
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 16/161 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALMGFA 59
MLG +G +APE+L +P + WF+TG I G+ +Y A+P + + L
Sbjct: 417 MLGVLGCLAPEVLSNVFGVPYPEPV-WFKTGATILNGGSIDYLANPKLIHASNLLLTLVL 475
Query: 60 EHRRF---QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 116
E F + W G E LG + D +YPGG +F+PLGL KD + + K+
Sbjct: 476 ELVFFFAAETWREAG----------EGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEAKV 524
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 157
KEVKNGRLAMLA+LG FVQ VTG P +NL HLA+P N
Sbjct: 525 KEVKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 565
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 15/112 (13%)
Query: 49 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
F+ + LMG E R + GS+G G DP YPGGP F+PLGL D
Sbjct: 10 FLSTLVLMGAVEAYR-----SAGSVGD---------FGADLDPLYPGGP-FDPLGLADDP 54
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
++ + K+KEVKNGRLAM+AI G+ VQG++TG GP +N +DHL DP NN+
Sbjct: 55 EAFLELKVKEVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLF 106
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 215
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRL M ++ G+FVQ +VTG GP ++L DHLADPVNNN
Sbjct: 216 AELKVKEIKNGRLTMFSMFGFFVQAIVTGKGPIEDLADHLADPVNNNA 263
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 93/168 (55%), Gaps = 24/168 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K G +P A+ WF+ G I G NY + +
Sbjct: 85 MLGALGCITPELLAKNG-VPFGEAV-WFKAGAQIFQDGGLNYLGNENLVHAQSILATLAV 142
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R AN G+ G GF + L D YPGG F+PLGL D ++
Sbjct: 143 QVILMGAAEAYR----ANGGAPG-----GFGEDL----DSLYPGGKFFDPLGLADDPDTL 189
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HLADP NN
Sbjct: 190 AELKVKELKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLADPSGNNA 237
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P ++
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGLADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 267
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 109 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 167 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN +
Sbjct: 210 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 259
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
+ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QAVLMGAVEGYRIAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNNA 255
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 74 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 131
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 132 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 174
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 175 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 222
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 25/170 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 448 MLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLS 506
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
+A+MG E R+ G GR+ D YPGGP F+PLGL D ++
Sbjct: 507 TLAIMGAVEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDAL 551
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP NN+ +
Sbjct: 552 AELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 601
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 16/161 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALMGFA 59
MLG +G +APE+L +P + WF+TG I G+ +Y A+P + + L
Sbjct: 213 MLGVLGCLAPEVLSNVFGVPYPEPV-WFKTGATILNGGSIDYLANPKLIHASNLLLTLVL 271
Query: 60 EHRRF---QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 116
E F + W G E LG + D +YPGG +F+PLGL KD + + K+
Sbjct: 272 ELVFFFAAETWREAG----------EGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEAKV 320
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 157
KEVKNGRLAMLA+LG FVQ VTG P +NL HLA+P N
Sbjct: 321 KEVKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 361
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 81/152 (53%), Gaps = 24/152 (15%)
Query: 19 IPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWAN 69
+P W++ G I A NY +P + F+ +A+MG E R+
Sbjct: 4 VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYG--GG 61
Query: 70 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 129
G GR+ D YPGGP F+PLGL D ++ + K+KE+KNGRLAM+A+
Sbjct: 62 VGDFGREL------------DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAM 108
Query: 130 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
LG++VQ LVT GP +NL HLADP NN+ +
Sbjct: 109 LGFYVQPLVTKAGPVENLTFHLADPSANNIFS 140
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 17/163 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G+I W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y +G+ YPGG +FNPL ++ K KE+
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPLNFAPTLEA----KEKEIA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRL MLA LG+ +Q VTG GP+ NLL H++DP +N ++ +L
Sbjct: 207 NGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 248
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
++L G P Y PG F+PLGL +D ++++ F E+ NGR AML + G + +
Sbjct: 55 EWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEV 114
Query: 138 VTGVG 142
T +G
Sbjct: 115 FTSIG 119
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PL L +D ++
Sbjct: 165 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 208 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANNA 255
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 60 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 117
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 118 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTF 160
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 161 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 207
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCTFPELLEKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D S
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPDSF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNA 254
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 116 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 173
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 174 QVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDAF 216
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 217 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNA 264
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 78 MLGALGCVFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 135
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 136 QVVLMGFVEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAF 178
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 179 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNA 226
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ MG E R G +G DP YPGG L +PLGL D ++
Sbjct: 164 QVVFMGAVEGYRVAG----GPLGEVV------------DPLYPGGSL-DPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAML++ G+FVQ +VTG GP +N+ DHLADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMLSMFGFFVQAIVTGKGPLENITDHLADPVNNN 253
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 MLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 160
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 161 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGG-AFDPLGLADDPDTA 203
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 204 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNA 251
>gi|441477201|dbj|BAM75360.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477203|dbj|BAM75361.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477205|dbj|BAM75362.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477207|dbj|BAM75363.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477209|dbj|BAM75364.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477211|dbj|BAM75365.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477213|dbj|BAM75366.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477215|dbj|BAM75367.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477217|dbj|BAM75368.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477219|dbj|BAM75369.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477221|dbj|BAM75370.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477223|dbj|BAM75371.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
Length = 61
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/57 (87%), Positives = 52/57 (91%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMG 57
MLGAVG IAPEILGK GLIP ETAL WF+TGVIPPAGTY YWADP+TLFVLEMALMG
Sbjct: 5 MLGAVGCIAPEILGKLGLIPPETALPWFKTGVIPPAGTYTYWADPFTLFVLEMALMG 61
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 162 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNG LAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 205 AELKVKELKNGSLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNNA 252
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN +
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCTFPELLEKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D S
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPDSF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNA 254
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P ++
Sbjct: 74 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWAC 131
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 132 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGLADDPDAF 174
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 175 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVNNNA 222
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCLFPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNA 255
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
+ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 RVVLMGFVEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANNA 254
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 93/172 (54%), Gaps = 27/172 (15%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 50
+LGA+G + PE+L + AG+ Q WF+ G I G NY + +
Sbjct: 91 LLGALGILTPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLA 148
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
+++ LMG AE R AN GS G FL D YPGGP F+PLGL D +
Sbjct: 149 VQVVLMGLAEAYR----ANGGSEG---FLD-------DLDTLYPGGP-FDPLGLADDPDT 193
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP N S
Sbjct: 194 FAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFAS 245
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K GL E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLAKNGLKFGEAV--WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G++G DP PGG F+PLGL D ++
Sbjct: 165 QVVLMGLIEGYRV----GGGTLGEGL------------DPLLPGGA-FDPLGLADDPEAC 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNA 255
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 172
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDAF 215
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 216 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNA 263
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G +I G +Y +P ++
Sbjct: 103 MLGALGCVFPELLARNGVKFGEAV--WFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWAT 160
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 161 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 203
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVN+N
Sbjct: 204 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNSNA 251
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+K GRLAML++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 207 GELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 254
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+K+GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKELKHGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 1 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 58
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 59 QVVLMGLIEGYR----VGGGPLGEGL------------DPLYPGGA-FDPLGLADDPEAF 101
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 102 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 148
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 97/175 (55%), Gaps = 18/175 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWA-------DPYTLFVL- 51
ML A GAI PE L G WF+TG + GT N++A +P LFV+
Sbjct: 108 MLAAAGAIIPEGLAANG--ADVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVV 165
Query: 52 --EMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
+ALMG AE+ R G G +G F++ S D YPGGP F+PLGL D
Sbjct: 166 AANVALMGAAENYRRT---GEGPAGYSPGVGKFDESAYDSMDSLYPGGP-FDPLGLADDP 221
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ + + K+KE+KNGRLAM++ LG+ VQ VTG GPY N H+ADP N+LT L
Sbjct: 222 EVLAELKVKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYNLLTIL 276
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P T++
Sbjct: 35 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILTVWAT 92
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL + ++
Sbjct: 93 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLAEIPEAF 135
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 136 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 182
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGGP F+PLGL D +
Sbjct: 167 QVVLMGLVEGYRINGL--PGV--------------GEGNDLYPGGPYFDPLGLADDPVTF 210
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 211 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNA 253
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 73 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 130
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 131 QVILMGAVEGYRIA--GGP--------------LGEVEDPLYPGGS-FDPLGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FV +VTG GP +NL DHLADPVNNN
Sbjct: 174 AELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNA 221
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+ + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ ++KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y P ++
Sbjct: 107 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PL L +D ++
Sbjct: 165 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 208 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANNA 255
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGGP F+PLGL D +
Sbjct: 167 QVVLMGLVEGYRINGL--PGV--------------GEGNDLYPGGPYFDPLGLADDPVTF 210
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 211 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGIVFPEPLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAT 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 QVILMGAVEGYRIA--GGP--------------LGEVTDPTYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 AELKVKELKNGRLAMFSVFGFFVQAIVTGKGPLENLADHLADPVNNNA 252
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +S
Sbjct: 165 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPESF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANNA 255
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANNA 255
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 162 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGG-AFDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KN RLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 205 AELKVKELKNSRLAMFSMFGFFVQAIVTGKGPIENLADHVADPVNNNA 252
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGWGLDKIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNA 254
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANNA 255
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLSKNGIKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWAS 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 162 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLAEDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANNA 252
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 94 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 151
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 152 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPEAF 194
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 195 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANNA 242
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 113 MLGALGCVFPELLSKNGIKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWAS 170
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 171 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLAEDPEAF 213
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 214 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANNA 261
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 79 MLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 136
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG P YPGG F+PLGL D ++
Sbjct: 137 QVILMGAVEGYRVA--GGP--------------LGKVTGPLYPGGS-FDPLGLADDPEAF 179
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 180 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 226
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 27/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG + LG + D YPGG F+PLGL D +
Sbjct: 165 QVILMGAVEGYRV-----PG----------DGPLGEAEDLLYPGGS-FDPLGLATDPVAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 97/175 (55%), Gaps = 24/175 (13%)
Query: 1 MLGAVGAIAPEILGKA-GLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTL 48
ML A+G + PE+L K G+ E+ W++ G G T +Y P +
Sbjct: 156 MLAALGVVIPEVLEKFFGVKFAESV--WWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVI 213
Query: 49 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 214 AICQFLLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGVLFDPLGLSKDP 263
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ ++ K+KE+KNGRLAM+A LG++VQ LVT GP +NLLDHL DP++NN +TS+
Sbjct: 264 ATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANNA 255
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 90/170 (52%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 162 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGG-AFDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPV NN +
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVTDPVANNAWS 254
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVGLMGLIEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANNA 255
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 90/168 (53%), Gaps = 14/168 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE L + G I +W++ AG+ Y+AD TLFV +M LMG+AE
Sbjct: 114 MLAVTGILIPECLERLGFIEN---FSWYE------AGSREYFADSTTLFVAQMVLMGWAE 164
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D PGS+ + + + D YPGG F+ + G G E M + KE
Sbjct: 165 GRRWADLIKPGSVDIEP--KYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV-LRTKE 221
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+KNGRLAMLA +G+ Q T P +NL+ HLADP + NV ++ H
Sbjct: 222 IKNGRLAMLAFVGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 269
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+ GS P + G L F+PLGLG D ++K F E+ + R AMLA+ G + +
Sbjct: 67 WFPGSAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGILIPECL 126
Query: 139 TGVGPYQNL 147
+G +N
Sbjct: 127 ERLGFIENF 135
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 27 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 84
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 85 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPDAF 127
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNG LAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 128 AELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 97/175 (55%), Gaps = 24/175 (13%)
Query: 1 MLGAVGAIAPEILGKA-GLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTL 48
ML A+G + PE+L K G+ E+ W++ G G T +Y P +
Sbjct: 156 MLAALGVVIPEVLEKFFGVNFAESV--WWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVI 213
Query: 49 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 214 AICQFLLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGVLFDPLGLSKDP 263
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ ++ K+KE+KNGRLAM+A LG++VQ LVT GP +NLLDHL DP++NN +TS+
Sbjct: 264 ATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + + LG + D YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYR---------------VAGNEPLGEAEDLLYPGGS-FDPLGLATDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 256
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 109 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 167 QVVLMGAVEGYRIAG----GPLGEVV------------DPIYPGGS-FDPLGLADDPEAF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct: 210 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLFDPVNNNA 257
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDKIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNA 254
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAT 159
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 160 QVLLMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 202
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 203 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNA 250
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 36 MLGALGCVFPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 93
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 94 QVVLMGLIEGYR----VGGGPLGEGL------------DPLYPGGA-FDPLGLADDPEAF 136
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 137 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANNA 184
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 91/170 (53%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN +
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWS 257
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLGDHITDPVNNN 254
>gi|303324981|pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 90/160 (56%), Gaps = 17/160 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G+I W+ AG Y+A TLFV+E L + E
Sbjct: 23 MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 73
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y +G+ YPGG +FNPL ++ K KE+
Sbjct: 74 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPLNFAPTLEA----KEKEIA 126
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
NGRL MLA LG+ +Q VTG GP+ NLL H++DP +N ++
Sbjct: 127 NGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIV 165
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PL L +D ++
Sbjct: 165 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM + G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 208 SELKVKELKNGRLAMFPMFGFFVQAIVTGKGPIENLFDHIADPVANNA 255
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAF 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRVA--GGP--------------LGEVEDPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPTVNNA 255
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + + LG + D YPGG F+PLGL D ++
Sbjct: 163 QVILMGAVEGYR---------------VAGDGPLGEAEDLLYPGGS-FDPLGLATDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 254
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 67 MLGALGCVFPELLVKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 124
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 125 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPEAF 167
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 168 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNA 215
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 22/172 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+G + PE+L G++ W++ G G T +Y P +
Sbjct: 147 MLAALGVVVPELLDLFGIV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIA 205
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ ++ LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 206 ICQVLLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGALFDPLGLSKDPV 255
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ ++FK+KE+KNGRLAM+A +G+++Q VTG GP QNL +HL+DP++NN+L+
Sbjct: 256 AFEEFKVKEIKNGRLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNNILS 307
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + + LG + D YPGG F+PLGL D ++
Sbjct: 164 QVILMGAVEGYR---------------VAGDGPLGEAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 91/163 (55%), Gaps = 14/163 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFA 59
MLG GA APEIL G+ W + A +Y+ Y+ D TLF ++M +M +A
Sbjct: 49 MLGVAGAAAPEILTNMGI---SNLPNWHE------APSYDGYFTDATTLFWVQMLMMNWA 99
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
E RR+QD PGS+ F +G YPGG +F+PLG K + +K K KE+
Sbjct: 100 EVRRWQDIRKPGSVSEDP-TPFSNAKLPAGVVGYPGG-IFDPLGYAKGD--LKTLKAKEI 155
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
NGRLAM+A G VQ TGVGP NL+ H+ADP +NNV +
Sbjct: 156 ANGRLAMVAFAGIMVQYDHTGVGPVANLVSHMADPAHNNVFAA 198
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 84 YLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
++ G+ PA+ PG F+PL LGKD + +K + E+++GR AML + G ++
Sbjct: 2 WMPGATAPAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEIL 61
Query: 139 TGVG 142
T +G
Sbjct: 62 TNMG 65
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YP G F+PLGL D +
Sbjct: 162 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPSG-AFDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVILMGAVEGYRVA--GGP--------------LGEVEDPIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNA 254
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGLIEGYRVG--GGP--------------LGEGLDKIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDHLADPVANNA 254
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVEFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + + LG + D YPGG F+PLGL D ++
Sbjct: 164 QVILMGAVEGYR---------------VAGDGPLGEAEDLLYPGGS-FDPLGLATDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 256
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 91/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + + LG + D YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYR---------------VAGDGPLGEAEDLLYPGGS-FDPLGLATDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+F Q +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFAQAIVTGKGPLENLADHLADPVNNNA 256
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 165 QVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 256
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VT GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTDKGPVQNLYDHVADPVANNA 254
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 75 MLGALGCVFPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAF 132
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 133 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPEAF 175
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 176 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANNA 223
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 91/170 (53%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT NY+ P + + E+
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIV 189
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + N FE D +PGGP F+PLGL D
Sbjct: 190 LVGGAEYYRIINGLN-----------FE-------DKLHPGGP-FDPLGLANDPDQAALL 230
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM A+LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 231 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 280
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 89 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 146
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 147 QVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEAF 190
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 191 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 238
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 87/167 (52%), Gaps = 31/167 (18%)
Query: 1 MLGAVGAIAPEILGKAGL-IPQETALAWFQTGVIPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L AG +P WF+ G +Y +P + +
Sbjct: 146 MLGALGCIFPELLNSAGFNLP-----VWFKAGGTIFENGIDYLGNPNLVHAQSALAVLSV 200
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG +E RF N G +G D YPGG F+PLG KD
Sbjct: 201 QVVLMGASEAYRF----NGGPLGE------------PADVLYPGGA-FDPLGFAKDPSKA 243
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM A+LGY+VQ L TG GP +NL +HLADP NN
Sbjct: 244 AELKVKEIKNGRLAMTAMLGYYVQALATGKGPIENLSEHLADPSKNN 290
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 22/173 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+G + PE+L ++ W++ G G T +Y P +
Sbjct: 158 MLAALGVVVPELLDLFEVV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIA 216
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 217 ICQALLMVGPEYARY--------CGIEALEPLGLYL--PGDINYPGGALFDPLGLSKDPV 266
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ +D K+KE+KNGRLAM+A LG+++Q VTG GP QNL++HL+DP++NN+L+S
Sbjct: 267 AFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSS 319
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 92/165 (55%), Gaps = 19/165 (11%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALA--WF---QTGVIPPAGTYNYWADPYTLFVLE-MA 54
MLGA+G + PE+L + G+ E WF Q I P WA P + E +
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWVQGWFTDLQRRRIGPT-----WATPSLVHAQEHFS 160
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+G++ + GS+ R + LG + D YPGG F+PLGL D ++ +
Sbjct: 161 HLGYSSYPH-------GSLLRATRVPGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAEL 212
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 213 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 257
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 85/169 (50%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
+LGA+G + PE+L I A WF+ G I G NY +P + +
Sbjct: 113 LLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAV 172
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 173 QVVLMGLVEGYRV----NGGPAGEGL------------DPLYPG-EAFDPLGLADDPDTF 215
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P NN
Sbjct: 216 AELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAF 264
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P +
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLG D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 267
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAT 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA PVNNN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNA 252
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAG--WFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL + ++
Sbjct: 165 QVVLMGAVEGYRIA--GGP--------------LGEIVDPLYPGGS-FDPLGLAERPQAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP ++L DH+ADPVNNN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNA 255
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 91/170 (53%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT NY+ P + + E+
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIV 189
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + N FE D +PGGP F+PLGL D
Sbjct: 190 LVGGAEYYRIINGLN-----------FE-------DKLHPGGP-FDPLGLANDPDQAALL 230
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM A+LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 231 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 280
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 73 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 130
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 131 QVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEAF 174
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 175 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNA 222
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P +
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLIHAQSILAILAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLG D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 267
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P +
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLG D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 267
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------YTLFVL-- 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P L VL
Sbjct: 107 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 166 QVILMGLVEGFRIN--------------GLDGV--GEGNNLYPGGQYFDPLGLADDPVTF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 256
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 91/175 (52%), Gaps = 28/175 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G+ E WF+ G I + NY + +
Sbjct: 92 MLGALGCVTPELLAKNGVSFGEAV--WFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLAC 149
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R PG G D YPGGP F+PLGL D +
Sbjct: 150 QVILMGGAEAYRAAG-EGPGLEGL--------------DSLYPGGP-FDPLGLADDPDTF 193
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP VNN + KF
Sbjct: 194 SELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNNGFAAATKF 248
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P +
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLG D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 267
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 94/168 (55%), Gaps = 25/168 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G I PE+L K G IP A+ WF+ G I G NY + + +
Sbjct: 25 MLGALGCITPELLAKNG-IPFGEAV-WFKAGAQIFQDGGLNYLGNESLVHAQSILATLAV 82
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R AN G+ G GF + L D YPGG F+PLGL D ++
Sbjct: 83 QVLLMGAAESYR----ANGGAPG-----GFGEDL----DSLYPGGA-FDPLGLADDPDTL 128
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HL+DP NN
Sbjct: 129 AELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPTGNNA 176
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P +
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLG D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 267
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------YTLFVL-- 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P L VL
Sbjct: 108 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 167 QVILMGLVEGFRIN--------------GLDGV--GEGNNLYPGGQYFDPLGLADDPVTF 210
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 211 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 257
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 87/163 (53%), Gaps = 14/163 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G I PE L + G I +W+ AG+ Y+AD TLFV +M LMG+AE
Sbjct: 115 MLAVTGIIIPECLERLGFIEN---FSWYD------AGSREYFADSTTLFVAQMVLMGWAE 165
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKE 118
RR+ D PGS+ + + + D YPGG F+ + G G E M + KE
Sbjct: 166 GRRWADLIKPGSVDIEP--KYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV-LRTKE 222
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+KNGRLAMLA LG+ Q T P +NL+ HLADP + NV +
Sbjct: 223 IKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
D + PG F+PLGLG D ++K F E+ + R AMLA+ G + + +G +N
Sbjct: 79 DGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENF 136
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 89/164 (54%), Gaps = 17/164 (10%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 58
MLG GA APEIL K G+ +P +Q Y+ D TLF ++M +M +
Sbjct: 83 MLGVAGAAAPEILTKMGISDLPNWHDAPNYQ----------GYFTDATTLFWVQMLMMNW 132
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
AE RR+QD PGS+ K SG YPGG +F+PLG K + + K KE
Sbjct: 133 AEVRRWQDMRKPGSVNEDPAFSGNKL--PSGIVGYPGG-IFDPLGYAKGD--LNKLKAKE 187
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ NGRLAM+A G VQ TGVGP NL+ H++DP +NNV +
Sbjct: 188 IANGRLAMVAFAGIMVQYDHTGVGPVANLVAHMSDPAHNNVFQA 231
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 94 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
PG F+PL LGK+ K ++ + E+++GR AML + G ++T +G
Sbjct: 51 PGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMG 99
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 86/167 (51%), Gaps = 25/167 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L G A WF+ G I NY +P + +
Sbjct: 89 MLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQSIVAVLLT 148
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R+ E + SGD YPGG F+PLGL D ++
Sbjct: 149 QLVIMGAAEAYRYAG---------------EGPVETSGDSLYPGGA-FDPLGLADDPDTL 192
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ L+TG P +NL DHLADP N
Sbjct: 193 AELKVKELKNGRLAMFSMFGFFVQALITGKSPLENLADHLADPSTAN 239
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 164 QVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVNNNA 255
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 94/169 (55%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYW--ADPYTLF---VLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT +Y+ + P L V E+
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVI 203
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD
Sbjct: 204 LVGGAEYYRATNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALL 244
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM ++LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 245 KVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 293
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 85 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 142
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 143 QVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEAF 186
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 187 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 234
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y P +
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILAC 176
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLG D +
Sbjct: 177 QVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAF 219
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 267
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 91/169 (53%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT NY+ P + + E+
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIV 191
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + N FE D +PGGP F+PLGL D
Sbjct: 192 LVGGAEYYRIINGLN-----------FE-------DKLHPGGP-FDPLGLANDPDQAALL 232
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 233 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 281
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------YTLFVL-- 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P L VL
Sbjct: 111 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 170 QVILMGLVEGFRIN--------------GLDGV--GEGNNLYPGGQYFDPLGLADDPVTF 213
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 214 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 260
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 94/169 (55%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYW--ADPYTLF---VLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT +Y+ + P L V E+
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVI 203
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD
Sbjct: 204 LVGGAEYYRATNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALL 244
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM ++LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 245 KVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 293
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 91/169 (53%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT NY+ P + V E+
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLILAVVAEIV 187
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 188 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQAALL 228
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 229 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 277
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 90/170 (52%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PL L +D ++
Sbjct: 165 QVVLMGLIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN +
Sbjct: 208 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 257
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 94/169 (55%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYW--ADPYTLF---VLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT +Y+ + P L V E+
Sbjct: 145 MLGAAGFIMPEAFNKFGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVI 203
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD
Sbjct: 204 LVGGAEYYRATNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALL 244
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM ++LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 245 KVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 293
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 94/169 (55%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYW--ADPYTLF---VLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT +Y+ + P L V E+
Sbjct: 120 MLGAAGFIIPEAFNKFGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVI 178
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD
Sbjct: 179 LVGGAEYYRATNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALL 219
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM ++LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 220 KVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 268
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 103 MLGALGCITPEVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 162 QVLLMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+F+Q +VTG GP +NLLDHL DPV NN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFIQAIVTGKGPLENLLDHLDDPVANN 252
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 91/169 (53%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT NY+ P + V E+
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINFILAVVAEIV 187
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 188 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQAALL 228
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 229 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 277
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 91/169 (53%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT NY+ P + V E+
Sbjct: 130 MLGAAGFIIPEAFNKYGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIV 188
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 189 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQAALL 229
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 230 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 278
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 165 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D LADPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADPLADPVNNNA 255
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 94/175 (53%), Gaps = 18/175 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP----------YTLF 49
ML A G + PE L G WF+TG + GT NY+A P + +
Sbjct: 112 MLAAAGILIPEGLQANGA--NIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI 169
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
+E+ LMG E R G G +G F+ + DP YPGGP F+PLGL D
Sbjct: 170 AVEVGLMGAVEFYRRN---GTGPAGYSPGIGKFDSSVFDGLDPLYPGGP-FDPLGLADDP 225
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ +++ K+KE+KNGRLAM+++LG+ VQ VTG GPY N H+ADP N+LT L
Sbjct: 226 EVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL 280
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 95/175 (54%), Gaps = 22/175 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLF---------- 49
ML A G I PE L G + WF+TG + GT NY+A P+ +
Sbjct: 153 MLAAAGIIIPEGLQANGAAIK--GGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVV 210
Query: 50 VLEMALMGFAEHRRFQDWANPG---SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK 106
V+E+AL+G E R PG +G+ F+ + D YPGGP F+PLGL
Sbjct: 211 VIEVALLGAVERYRQSGEGPPGYSPGVGK-----FDSSIFSGLDNLYPGGP-FDPLGLAD 264
Query: 107 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
D ++ + K+KE+KNGRLA++++LG+ VQ VTG GPY N H+ADP N+LT
Sbjct: 265 DPETFAELKVKEIKNGRLALISVLGFAVQSYVTGEGPYANWSKHVADPFGYNLLT 319
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 92/169 (54%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWAD--PYTLFVL---EMA 54
MLGA G I PE K G A+ WF+TG ++ GT NY+ + P L V E+
Sbjct: 134 MLGAAGFIVPEAFNKFGANCGPEAV-WFKTGALLLDGGTLNYFGNSIPINLVVAVIAEVV 192
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 193 LLGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQAAIL 233
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG++ Q VTG GP +NL HL+DP NN+LT L
Sbjct: 234 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVL 282
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 92/169 (54%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ P L V E+
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVI 190
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + LGF+ D +PGGP F+PLGL KD
Sbjct: 191 LVGGAEYFRITNG-----------LGFD-------DKLHPGGP-FDPLGLAKDPDQAALL 231
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG+F Q VTG GP +NL HL+DP NN+LT +
Sbjct: 232 KVKEIKNGRLAMFAMLGFFFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 280
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 86/166 (51%), Gaps = 20/166 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L K GLI A W+ AG Y+A TLFV+E L + E
Sbjct: 96 MLGVAGMLLPEVLTKIGLI---DAPQWYD------AGKATYFASSSTLFVIEFILFHYVE 146
Query: 61 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPL-FNPLGLGKDEKSMKDFKLKE 118
RR+QD NPG + + F + G PA PL F P K+ KE
Sbjct: 147 IRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPAASSTPLNFEPTLEAKE---------KE 197
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+ NGRLAMLA LG+ VQ VT GP+ NLL HL+DP +N ++ +L
Sbjct: 198 LANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 84 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
YL GS PG F+PLGL +D ++++ F E+ NGR AML + G + ++T +G
Sbjct: 58 YLNGS----LPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIG 112
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 160
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 161 QVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPATF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 205 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGLIEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNA 254
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILAKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGLIEGYRIG--GGP--------------LGEGLDSLYPGGA-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADPVANNA 254
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G I PE+L K+G Q WF+ G I G +Y +P + +
Sbjct: 98 MLGALGCITPELLAKSGT--QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 155
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 156 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPG-ESFDPLGLADDPDTF 198
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHL++P NN
Sbjct: 199 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAF 247
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 38 MLGALGCITPEVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 96
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 97 QVVLMGLVEGFRIN--GLPGV--------------GEGNNLYPGGQYFDPLGLADDPTTF 140
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 141 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 187
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 92/169 (54%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG ++ GT +Y+ + V E+
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAV-WFKTGALLLDGGTLSYFGASIHINLIAAVVAEVI 203
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD
Sbjct: 204 LVGGAEYYRATNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALL 244
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM ++LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 245 KVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 293
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 90/170 (52%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G I PE+L K G IP A+ WF+ G I G NY + +
Sbjct: 90 MLGALGCITPELLAKNG-IPFGEAV-WFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAF 147
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 148 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 190
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P N
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFA 240
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 63 MLGALGCITPEVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 121
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 122 QVVLMGLVEGFRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPTTF 165
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 166 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 212
>gi|40736929|dbj|BAD06999.1| chlorophyll a/b-binding protein-like protein [Ipomoea nil]
Length = 51
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
LKEVKNGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNN+LT+LKFH
Sbjct: 1 LKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTNLKFH 51
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 160
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 161 QVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPTTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 205 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPV-WFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGF 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D ++
Sbjct: 162 QVVLMGLVESFRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTL 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 252
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 94/175 (53%), Gaps = 18/175 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP----------YTLF 49
ML A G + PE L G WF+TG + GT NY+A P + +
Sbjct: 82 MLAAAGILIPEGLQANGA--NIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI 139
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
+E+ LMG E R G G +G F+ + DP YPGGP F+PLGL D
Sbjct: 140 AVEVGLMGAVEFYRRN---GSGPAGYSPGIGKFDSSVFDGLDPLYPGGP-FDPLGLADDP 195
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ +++ K+KE+KNGRLAM+++LG+ VQ VTG GPY N H+ADP N+LT L
Sbjct: 196 EVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL 250
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 163 QVVLMGFIEGYRVG--GGP--------------LGEGLDSIYPGGA-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD NN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADLAANNA 253
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G I PE+L K+G Q WF+ G I G +Y +P + +
Sbjct: 97 MLGALGCITPELLAKSGT--QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 154
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 155 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 197
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHL++P NN
Sbjct: 198 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAF 246
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL + G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCTFPEILERNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNA 254
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 162 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +V G GP +NL DH+ DPV NN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVRGKGPIENLFDHVTDPVANNA 252
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 90/170 (52%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G I PE+L K G IP A+ WF+ G I G NY + +
Sbjct: 90 MLGALGCITPELLAKNG-IPFGEAV-WFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAF 147
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 148 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 190
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P N
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFA 240
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
+L +G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 108 ILERLGCVFPELLSRNGVKFGEAV--WFKVGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 166 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 83 MLGALGCITPEVLEKWLRVDFKEPI-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 141
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 142 QVVLMGLVEGFRINGL--PGV--------------GDGNNLYPGGQYFDPLGLADDPVTF 185
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 186 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 232
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y + ++
Sbjct: 86 MLGALGCVFPELLARNGVKFGEAC--WFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWAT 143
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PL L D ++
Sbjct: 144 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLALADDPEAF 186
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 187 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 234
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 107 MLGALGCITPEVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 166 QVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 256
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGXVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 103 MLGALGCITPEVLEKWLKVDFKEPV-WFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGF 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 162 QVVLMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 252
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG D YPGG F+PLGL D +
Sbjct: 163 QVVLMGLIEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPDAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANNA 253
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------YTLFVL-- 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P L VL
Sbjct: 106 MLGALGCITPEVLQKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 165 QVILMGLVEGYRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 89/170 (52%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K G IP A+ WF+ G I G NY +
Sbjct: 87 MLGALGCITPELLAKNG-IPFGEAV-WFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAF 144
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 145 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 187
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P N
Sbjct: 188 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFA 237
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 165 QVILMGLVEGYRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDH+ +PV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 255
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 70 MLGALGCITPEVLEKWLRVDFKEPI-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 128
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 129 QVVLMGLVEGFRIN--GLPGV--------------GDGNNLYPGGQYFDPLGLADDPVTF 172
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 173 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 219
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 88/163 (53%), Gaps = 28/163 (17%)
Query: 5 VGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMAL 55
+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ L
Sbjct: 1 LGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLL 58
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
MG E R G +G DP YPGG F+PLGL D ++ + K
Sbjct: 59 MGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELK 101
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+KE+KNGRLAML++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 102 VKEIKNGRLAMLSMFGFFVQAIVTGKGPLENLADHLADPVNNN 144
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 87/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + G G+ YPGG F+PLGL D +
Sbjct: 163 QIVLMGLVEGFRINGLPDVGE----------------GNDLYPGGQYFDPLGLADDPVTF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 89/174 (51%), Gaps = 26/174 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP--------YTLFVLE 52
MLGA+G + PE+L K G+ E A+ W I G +Y +P + +
Sbjct: 76 MLGALGCLTPELLAKNGVSFGE-AVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAILASQ 134
Query: 53 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 112
+ LMG E R + PG G D YPGG F+PLGL D +
Sbjct: 135 VLLMGAIEGYRV--YGGPGGEGL--------------DKVYPGGDYFDPLGLADDPDTFA 178
Query: 113 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL HLADP VNN + KF
Sbjct: 179 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLESHLADPSVNNGFAAATKF 232
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 89/170 (52%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K G IP A+ WF+ G I G NY +
Sbjct: 70 MLGALGCITPELLAKNG-IPFGEAV-WFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAF 127
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 128 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 170
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P N
Sbjct: 171 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFA 220
>gi|161376574|gb|ABX71549.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376576|gb|ABX71550.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376578|gb|ABX71551.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376580|gb|ABX71552.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376582|gb|ABX71553.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376584|gb|ABX71554.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376586|gb|ABX71555.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376588|gb|ABX71556.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376590|gb|ABX71557.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376592|gb|ABX71558.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376594|gb|ABX71559.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376596|gb|ABX71560.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376598|gb|ABX71561.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376600|gb|ABX71562.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376602|gb|ABX71563.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376604|gb|ABX71564.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376606|gb|ABX71565.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376608|gb|ABX71566.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376610|gb|ABX71567.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
Length = 135
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 7/129 (5%)
Query: 36 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 95
AG Y+A TLFV+E L + E RR+QD NPGS+ + F+ Y + YPG
Sbjct: 12 AGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKNYSLPPNEVGYPG 69
Query: 96 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
G +FNPL ++ K KE+ NGRLAMLA LG+ VQ VTG GP+ NLL HL+DP
Sbjct: 70 G-IFNPLNFAPTAEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPW 124
Query: 156 NNNVLTSLK 164
+N ++ ++
Sbjct: 125 HNTIVQTMS 133
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 88/168 (52%), Gaps = 26/168 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 108 MLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 167 QVVLMGLVEGFRIN--------------GLDGV--GEGNNLYPGGQYFDPLGLADDPATF 210
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 211 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNA 258
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 87/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 104 MLGAFGCITPEVLQKWVRVEFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 163 QVILMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDH+ DPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDDPVANN 253
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 105 MLGALGCITPEVLEKWLRVDFKEPI-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 164 QVVLMGLVEGFRINGL--PGV--------------GDGNNLYPGGQYFDPLGLADDPVTF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 254
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 88/168 (52%), Gaps = 26/168 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 106 MLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 165 QVILMGLVEGYRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNA 256
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 90/167 (53%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------YTLFVL-- 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P L VL
Sbjct: 106 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 165 QVILMGLVEGYRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ ++KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 209 AELRVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 88/168 (52%), Gaps = 26/168 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 107 MLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 166 QVILMGLVEGYRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNA 257
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K+G E WF+ G I G +Y +P + +
Sbjct: 94 MLGALGCLTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 151
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 152 QVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 194
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 195 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 243
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 87/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + G G+ YPGG F+PLGL D +
Sbjct: 163 QIVLMGLVEGFRINGLPDVGE----------------GNDLYPGGQYFDPLGLADDPVTF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E + WF+ G I G +Y + ++
Sbjct: 86 MLGALGCVFPELLARNGVKFGEAS--WFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWAT 143
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PL L D ++
Sbjct: 144 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLALADDPEAF 186
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+PVNNN
Sbjct: 187 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNA 234
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL + ++
Sbjct: 165 QVVLMGAVEGYRVA--GGP--------------LGEIVDPLYPGG-RFDPLGLAERPQAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
K+KE+KNGRLAM ++ G+ VQ +VTG GP +NL DH+ADPVNNN
Sbjct: 208 DALKVKEIKNGRLAMFSMFGFLVQAIVTGKGPLENLADHIADPVNNN 254
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
M GA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MPGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL ++
Sbjct: 163 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADVPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 85/167 (50%), Gaps = 28/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 70 MLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 127
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E + D YPGG F PLGL D +
Sbjct: 128 QVVLMGFVEGYGVGGGPLGEGL----------------DKVYPGG-AFEPLGLADDPDTA 170
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 171 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 217
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 104 MLGALGCFFPEILSKNGVNFGEAV--WFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAV 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG D YPGG F+ LGL +D +
Sbjct: 162 QVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGG-AFDHLGLAEDPDTF 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+FK+KE NGRLAM ++LG+FVQ +VTG GP +N DH+ADPV NN
Sbjct: 205 AEFKVKEFNNGRLAMFSMLGFFVQAIVTGKGPIENFFDHVADPVANNA 252
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 109 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 167 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 253
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 62/166 (37%), Positives = 83/166 (50%), Gaps = 28/166 (16%)
Query: 4 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMA 54
A+G + PE+L K G+ Q WF+ G I G +Y +P + ++
Sbjct: 2614 ALGCLTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVI 2671
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
LMG E R N G G DP YPG F+PLGL D + +
Sbjct: 2672 LMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTFAEL 2714
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P NN
Sbjct: 2715 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAF 2760
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEVLSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGLIEGYRVG--GGP--------------LGEGLDKIYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPV NN
Sbjct: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLSDPVANNA 254
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 104 MLGALGCIFPEVLEKWVKVDFKEPV-WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGF 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 163 QVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPTTF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 159
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 160 QVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEAF 203
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 204 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNA 251
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 91/175 (52%), Gaps = 29/175 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K+G E WF+ G I G +Y +P + +
Sbjct: 95 MLGALGCLTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 153 QVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P VNN + KF
Sbjct: 196 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKF 250
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 15/161 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + ++ K GL A+ W++ ++ +Y AD TL V+++ L + E
Sbjct: 89 MLGVAGMLGADLANKVGL---PAAVQWYEAPLV------DYQADWKTLLVVQLVLHAWVE 139
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+ D+ +PGS F L + YPGGP F+PLG K ++ + KLKE+K
Sbjct: 140 GRRWADFHSPGSANAD---PFGNSLPSTATTGYPGGP-FDPLGFSKG--NLPELKLKEIK 193
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
NGRLAM+A LG FVQ TG P NL HLADP + N+
Sbjct: 194 NGRLAMVASLGLFVQYSATGASPLDNLAAHLADPGHANIFA 234
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWAS 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG D YPGG F+PLGL D ++
Sbjct: 163 QVVLMGLIEGYRVG--GGP--------------LGEGLDKLYPGGA-FDPLGLADDPEAF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANNA 253
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y + ++
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D LADPVNNN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADPLADPVNNNA 254
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWAT 159
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 160 QVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEAF 203
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 204 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNA 251
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+ + G+ E W + G I G +Y +P ++
Sbjct: 108 MLGALGCVFPELFARNGVKFGEAV--WLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 166 QVLLMGAVEGYRVA--GGP--------------LGVVVDPLYPGGS-FDPLGLAEDPEAF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE KNGRLAM ++ G+F+Q +VTG GP +NL DHL DPVNNN +
Sbjct: 209 AELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWS 258
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 87/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 109 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 167
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPG F+PLGL D +
Sbjct: 168 QVLLMGLVEGFRIN--GLPGV--------------GEGNNLYPGDQYFDPLGLADDPATF 211
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 212 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 15/161 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + ++ K GL A+ W++ ++ +Y AD TL V+++ L + E
Sbjct: 85 MLGVAGMLGADLANKVGL---PAAVQWYEAPLV------DYQADWKTLLVVQLVLHAWVE 135
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+ D+ +PGS F L + YPGGP F+PLG K ++ + KLKE+K
Sbjct: 136 GRRWADFHSPGSANAD---PFGNSLPSTATTGYPGGP-FDPLGFSKG--NLPELKLKEIK 189
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
NGRLAM+A LG FVQ TG P NL HLADP + N+
Sbjct: 190 NGRLAMVASLGLFVQYSATGASPLDNLAAHLADPGHANIFA 230
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 87/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 59
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 60 QVILMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 103
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 104 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 150
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 164 QVVLMGLVEGFRIN--GLPGV--------------GEGNNLYPGGQYFDPLGLADDPVTF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDH+ +PV NN
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 254
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 103 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 162 QVVLMGLVEGFRIN--GLPGV--------------GEGNNLYPGGQYFDPLGLADDPVTF 205
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDH+ +PV NN
Sbjct: 206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 252
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 95 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 153 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D LADPV NN +
Sbjct: 196 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADRLADPVANNAWS 245
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 93/168 (55%), Gaps = 25/168 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K G +P A+ WF+ G I G NY + +
Sbjct: 87 MLGALGCITPELLAKNG-VPFGEAV-WFKAGAQIFQDGGLNYLGNENLVHAQSILATLAV 144
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R AN G+ G GF + L D YPGG F+PLGL D ++
Sbjct: 145 QVLLMGAAESYR----ANGGAPG-----GFGEDL----DSLYPGGA-FDPLGLADDPDTL 190
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HL+DP NN
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNNA 238
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 87/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 104 MLGAFGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 163 QVILMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 87/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 104 MLGAFGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 163 QVILMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 50
MLGA+G + PE+L K G+ +E WF+ G I G +Y +P ++
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKV--WFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWA 159
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R + G G YPGG F+PLG D ++
Sbjct: 160 CQVILMGLVEGYRINGLPDVGE----------------GGDLYPGGQYFDPLGFADDPET 203
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL +PV NN
Sbjct: 204 LAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 50
MLGA+G + PE+L K G+ +E WF+ G I G +Y +P ++
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKV--WFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWA 159
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R + G G YPGG F+PLG D ++
Sbjct: 160 CQVILMGLVEGYRINGLPDVGE----------------GGDLYPGGQYFDPLGFADDPET 203
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL +PV NN
Sbjct: 204 LAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 92/176 (52%), Gaps = 29/176 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
+LG +G + PE+L K G + + A+ WF+ G I A NY +P +
Sbjct: 93 LLGTLGIVTPELLEKYGGVKFQEAV-WFKAGAQIFSADGLNYLGNPSLVHAQSIIATVAT 151
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ L+G AE R N G G DP YPGG F+PLGL D +
Sbjct: 152 QVILLGLAEGYR----VNGGPAGEIT------------DPLYPGG-AFDPLGLADDPDTF 194
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP--VNNNVLTSLKF 165
+ K+KE+KNGRLA A LG+FVQ +VTG GP QNL DHLADP VN + + KF
Sbjct: 195 AELKVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLADPFAVNGFTIGAQKF 250
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 60/77 (77%)
Query: 89 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 148
GD YPGGPLF+PL L D ++++ K+KE+KNGRLAM+A LG++ Q +TG GP QNL+
Sbjct: 252 GDINYPGGPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGFYAQAALTGKGPVQNLV 311
Query: 149 DHLADPVNNNVLTSLKF 165
+H++DP +NN+L LKF
Sbjct: 312 EHISDPFHNNLLCVLKF 328
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 69 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 126
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL + ++
Sbjct: 127 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEVPEAF 169
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FV +VTG GP +NL DHLADPVNNN +
Sbjct: 170 AELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWS 219
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 90/172 (52%), Gaps = 28/172 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 197 MLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAF 254
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G +G D YPGG F+PLGL D ++
Sbjct: 255 QVVLMGLAEAYR----VNGGPLGED------------SDALYPGG-AFDPLGLADDPETF 297
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 298 AELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 349
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 90/172 (52%), Gaps = 28/172 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 437 MLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAF 494
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G +G D YPGG F+PLGL D ++
Sbjct: 495 QVVLMGLAEAYR----VNGGPLGED------------SDALYPGG-AFDPLGLADDPETF 537
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 538 AELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 589
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 17/117 (14%)
Query: 47 TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK 106
+ ++ LMG AE R N G +G D YPGG F+PLGL
Sbjct: 10 AILAFQVVLMGLAEAYR----VNGGPLGED------------SDALYPGG-AFDPLGLAD 52
Query: 107 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
D ++ + K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 53 DPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 109
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 90/172 (52%), Gaps = 28/172 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 180 MLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAF 237
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G +G D YPGG F+PLGL D ++
Sbjct: 238 QVVLMGLAEAYR----VNGGPLGED------------SDALYPGG-AFDPLGLADDPETF 280
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 281 AELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 332
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 90/172 (52%), Gaps = 28/172 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 420 MLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAF 477
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G +G D YPGG F+PLGL D ++
Sbjct: 478 QVVLMGLAEAYR----VNGGPLGED------------SDALYPGG-AFDPLGLADDPETF 520
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 521 AELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 572
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 90/172 (52%), Gaps = 28/172 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 660 MLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAF 717
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G +G D YPGG F+PLGL D ++
Sbjct: 718 QVVLMGLAEAYR----VNGGPLGED------------SDALYPGG-AFDPLGLADDPETF 760
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 761 AELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 812
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG D YPGG F+PLGL D ++ + K+KE+KNGRLAM A+ G++VQ LVTG GP
Sbjct: 15 LGEDSDALYPGG-AFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPV 73
Query: 145 QNLLDHLADPVNNNVLTSL 163
+N H+ADP N N LT++
Sbjct: 74 ENWAAHVADPFNVNGLTAV 92
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 86/169 (50%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G E WF+ G I G +Y +P + +
Sbjct: 95 MLGALGCLTPELLAKNGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 153 QVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 196 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 244
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 87/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 60 MLGAFGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 118
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 119 QVILMGLVEGLRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 162
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 163 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 209
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADP------YTLFVL- 51
MLGA+G + PE+L K G+ +E WF+ G I G +Y +P L VL
Sbjct: 106 MLGALGCVFPEVLQKWVGVEFKEPV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG 163
Query: 52 -EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 164 SQVLLMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVT 207
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPV NN
Sbjct: 208 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 255
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 31 MLGALGCITPEVLQKWLNVTFKEPV-WFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGF 89
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG E R G + G G+ YPGG F+PLGL D +
Sbjct: 90 QVVVMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTF 133
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 134 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 180
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 85/169 (50%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G Q WF+ G I G +Y +P +
Sbjct: 98 MLGALGCLTPELLAKNGT--QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAC 155
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 156 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPG-ESFDPLGLADDPDTF 198
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHL++P NN
Sbjct: 199 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLSNPTVNNAF 247
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 13/159 (8%)
Query: 1 MLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYT-LFVLEMALMG 57
M G + P + KAG+ IPQ W+ G + N+ P+ L +++ L G
Sbjct: 95 MTAVAGILFPAVATKAGVVNIPQ-----WYDAGSVWVQNNPNF---PFAALLFIQIILTG 146
Query: 58 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKL 116
+ E +R+ D+ NPGS FLG G + YPGG LF+P GL + E ++ ++
Sbjct: 147 WVETKRWLDFKNPGSQADGSFLGVTDDFKGVAN-GYPGGKLFDPFGLSRGSEGQLQKYQE 205
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
E+KNGRLAM+A LG+ Q TG GP NL DHLA+P
Sbjct: 206 NEIKNGRLAMVAFLGFIAQHAATGKGPIDNLADHLANPT 244
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PL LG D + +K F+ E+ +GR AM A+ G + T G
Sbjct: 59 DGSLPGDFGFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKAG 111
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 60/77 (77%)
Query: 89 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 148
GD YPGG LF+PL L D ++ ++ K+KE+KNGRLAM+A LG++VQ +TG GP QNL+
Sbjct: 250 GDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLI 309
Query: 149 DHLADPVNNNVLTSLKF 165
DH++DP +NN+L SL F
Sbjct: 310 DHISDPFHNNLLGSLNF 326
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 91/170 (53%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + P L V E+
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVV 188
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + N FE D +PGGP F+PLGL D
Sbjct: 189 LVGGAEYYRIINGLN-----------FE-------DKLHPGGP-FDPLGLADDPDQAAIL 229
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM A+LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 230 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 279
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV-------- 50
MLGA+G + PE+L K G+ +E WF+ G I G +Y +P +
Sbjct: 107 MLGALGCVFPEVLQKWVGVEFKEPV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLG 164
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 165 FQVLLMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVT 208
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPV NN
Sbjct: 209 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 92/174 (52%), Gaps = 22/174 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML ++GA+ PEIL G T W++ G G T +Y P +
Sbjct: 170 MLASLGALVPEILDIFGAF-HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 228
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGG LF+PL L KD
Sbjct: 229 ICQAILMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGVLFDPLNLSKDAA 278
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ ++ K+KE+KNGRLAM+A LG++ Q +TG GP QNLLDH+ADP +NN L+ L
Sbjct: 279 AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLL 332
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 86/170 (50%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G+ Q WF+ G I G +Y +P +
Sbjct: 95 MLGALGCVTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 153 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P NN
Sbjct: 196 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFA 245
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 96/177 (54%), Gaps = 24/177 (13%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+G + PE+L G++ W++ G G T +Y +
Sbjct: 155 MLAALGVVIPELLDLFGIV-HFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIA 213
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 214 ICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGALFDPLGLSKDPV 263
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
++ K+KE+KNGRLAM+A LG+++Q VTG GP QNL++HL+DP++NN+L+S FH
Sbjct: 264 GFEELKVKEIKNGRLAMVAWLGFYLQAAVTGKGPVQNLVEHLSDPLHNNILSS--FH 318
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 91/170 (53%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMA 54
MLGA GA+ PE K G A+ WF+TG + G T NY+ + P L V E+
Sbjct: 124 MLGAAGAVIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVV 182
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 183 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAAIL 223
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++L +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 224 KVKEIKNGRLAMFSMLAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 273
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 86/169 (50%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G+ Q WF+ G I G +Y +P +
Sbjct: 96 MLGALGCVTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 153
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 154 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 196
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P NN
Sbjct: 197 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAF 245
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 58/76 (76%)
Query: 89 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 148
GD YPGG LF+PL L KD + ++ K+KE+KNGRLAM+A LG+++Q TG GP QNLL
Sbjct: 254 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAATGKGPVQNLL 313
Query: 149 DHLADPVNNNVLTSLK 164
DHLADP +NN+L+ K
Sbjct: 314 DHLADPFHNNLLSIFK 329
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 89/167 (53%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP--------YTLFVLE 52
MLGA+G + PE+L + G+ E A+ + I G +Y +P ++ +
Sbjct: 106 MLGALGCVFPELLARNGVKFGE-AVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 53 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 112
+ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 VVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFA 207
Query: 113 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+K GRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 208 ELKVKELKKGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 254
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG D YPGG F+PLGL D ++
Sbjct: 164 QVVLMGLIEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D + DPV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDQINDPVANNA 254
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYT-LFVLEMALMGFA 59
M+G G + P +L K G + WF+ G + + + P++ L ++E MGF
Sbjct: 49 MMGVAGILVPALLTKLGAM---NVPVWFEAGKVANDNS----SVPFSALLMVEFLAMGFV 101
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKE 118
E +R+ D +PGS G G G YPGG F+P G K E+S K ++KE
Sbjct: 102 ETKRWYDIKSPGSQGDGSIFGITDDFKGK-SVGYPGGTFFDPFGFSKGSEESYKTLQVKE 160
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
+ NGRLAM+A++G++ Q TG GP NL DH+ADP
Sbjct: 161 IANGRLAMVAMVGFWAQYAATGKGPVDNLFDHIADP 196
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 82/159 (51%), Gaps = 36/159 (22%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA+G + PE+L K G+ E WF+ WA ++ LMG E
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAV--WFKA----------IWAS-------QVVLMGLIE 147
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
R P LG DP YPGG F+PLGL D ++ + K+KE+K
Sbjct: 148 GYRVG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIK 190
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
NGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 191 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANNA 229
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G ++ +P ++
Sbjct: 112 MLGALGCVFPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 86/171 (50%), Gaps = 29/171 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------- 50
MLGA+G I PE+L K+G Q WF+ G I G +Y +P +
Sbjct: 98 MLGALGCITPELLAKSGT--QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIRRHPGR 155
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 156 FKVILMGLVEGYR----VNGGPAGEGL------------DPLYPG-ESFDPLGLADDPDT 198
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHL++P NN
Sbjct: 199 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFA 249
>gi|326532160|dbj|BAK01456.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 78
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 56/75 (74%)
Query: 91 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 150
P YPGGPLFNP+GL KD ++ + KLKE+KNGRLAM+A+LG+ VQ VT GP NLL H
Sbjct: 3 PGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFIVQASVTHAGPIDNLLTH 62
Query: 151 LADPVNNNVLTSLKF 165
L+DP N N++ +L
Sbjct: 63 LSDPFNKNIIHALTL 77
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 84/168 (50%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLG VG I PE+L + G+ E WF+ G I NY DP +
Sbjct: 109 MLGTVGCIVPELLERNGVKIGEAV--WFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAA 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PL L D +
Sbjct: 167 QVILMGAIEGYRIS--GGP--------------LGEPTDPLYPGGN-FDPLHLADDPEEF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
K+KE+KNGRLAM A+LG++VQ +VTG GP +NL DHLADP NN
Sbjct: 210 AILKVKEIKNGRLAMFAMLGFYVQAIVTGKGPLENLYDHLADPFKNNA 257
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 90/170 (52%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMA 54
MLGA GA+ PE K G A+ WF+TG + G T NY+ + P L V E+
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVV 183
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 184 LVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAAIL 224
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 274
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 86/170 (50%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G+ Q WF+ G I G +Y +P +
Sbjct: 95 MLGALGCLTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 153 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P NN
Sbjct: 196 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFA 245
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 92/175 (52%), Gaps = 29/175 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+LG G+ E+ WF+ G I G +Y +P +
Sbjct: 98 MLGALGCIFPELLGSYGVPFGESV--WFKAGAQIFQEGGLDYLGNPSLVHAQSILAILGT 155
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G +G D YPGG F+PLGL D +
Sbjct: 156 QVILMGAIEGYR----VNGGPLGEGL------------DKLYPGGS-FDPLGLADDPDTF 198
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P VNN + KF
Sbjct: 199 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNNAFAYATKF 253
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 86/170 (50%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G+ Q WF+ G I G +Y +P +
Sbjct: 95 MLGALGCLTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 153 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P NN
Sbjct: 196 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFA 245
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 87/164 (53%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G R+ DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA-----GGPLREVT-----------DPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 86/170 (50%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G+ Q WF+ G I G +Y +P +
Sbjct: 95 MLGALGCLTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 153 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P NN
Sbjct: 196 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFA 245
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 90/170 (52%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMA 54
MLGA GA+ PE K G A+ WF+TG + G T NY+ + P L V E+
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVI 183
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 184 LVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAAIL 224
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 274
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 93/172 (54%), Gaps = 29/172 (16%)
Query: 1 MLGAVGAIAPEILGKAGL-IPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 50
+LGA+G + PE+L + G+ +P + WF+ G I G NY + +
Sbjct: 97 LLGALGCVVPELLARNGVAMPADGV--WFKVGAEIFKEGGLNYLGNENLVHAQSIVATLL 154
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
+++ LMG+AE R N G +G DP YPGG F+PLGL D +
Sbjct: 155 VQLVLMGWAEGYRI----NGGPLGEGL------------DPLYPGGA-FDPLGLADDPDT 197
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ + K+KE+KNGR+AM A+ G+ VQ +VT GP +NL DHLA P NNV ++
Sbjct: 198 LAELKVKELKNGRMAMAAMFGFLVQAIVTQKGPLENLADHLAAPGTNNVFSN 249
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 104 MLGALGCVFPEILSKNGIKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P G D YPGG F+PLGL D +
Sbjct: 162 QVVLMGFIEGYRVG--GGPLDEGL--------------DIIYPGGA-FDPLGLADDPDTA 204
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D L DP NNN
Sbjct: 205 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDQLRDPGNNNA 252
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 86/162 (53%), Gaps = 28/162 (17%)
Query: 6 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 56
GA PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 1 GASFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 58
Query: 57 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 116
G E R G +G DP YPGG F+PLGL D ++ + K+
Sbjct: 59 GAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAFAELKV 101
Query: 117 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 102 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 143
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 90/169 (53%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ P L V E+
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVV 190
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 191 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLANDPDQAALL 231
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 232 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAAHLSDPFGNNLLTVI 280
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 85/169 (50%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G E WF+ G I G +Y +P +
Sbjct: 95 MLGALGCLTPELLAKNGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 153 QVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 196 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 244
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 181 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 81 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 139
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 140 ENLADHLADPVNNN 153
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 86/164 (52%), Gaps = 28/164 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PL L D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLRLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 22/176 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLF-----VLEMA 54
ML A+GA+ PE+L +G W++ G G T +Y P F VL +A
Sbjct: 173 MLAALGALIPEVLDLSGAF-HFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIA 231
Query: 55 -----LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
LM E+ R+ G + YL GD YPGG LF+PL L KD
Sbjct: 232 FCQAILMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGILFDPLNLSKDPV 281
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 165
S ++ K+KE+KNGRLAM+A LG+++Q +TG GP +NL++H++DP++NN+ ++LK
Sbjct: 282 SFEELKVKEIKNGRLAMVAWLGFYIQAALTGKGPVENLVEHISDPLHNNLFSTLKL 337
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 22/174 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML ++GA+ PEIL G T W++ G G T +Y P +
Sbjct: 170 MLASLGALVPEILDIFGAF-HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 228
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LM E+ R+ G + YL GD YPGG LF+PL L KD +
Sbjct: 229 ICQAILMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGVLFDPLNLSKDAE 278
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ ++ K+KE+KNGRLAM+A LG++ Q +TG GP QNLL+H+ADP +NN L+ L
Sbjct: 279 AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLNHIADPFHNNFLSLL 332
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +V G GP +NL D LA PV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVPGKGPIENLSDPLAAPVANNA 254
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 89/169 (52%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+LG G +P A+ WF+ G I G +Y +P +
Sbjct: 98 MLGALGCIFPELLGSYG-VPFGEAV-WFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGT 155
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G +G D YPGG F+PLGL D +
Sbjct: 156 QVLLMGAIEGYR----VNGGPLGEGL------------DKLYPGGS-FDPLGLADDPDTF 198
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 199 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAF 247
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 22/175 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+GA+ PE+L G W++ G G T +Y P +
Sbjct: 166 MLAALGALIPEVLDLTGAF-HFAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIVIA 224
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ ++ LM E+ R+ G + YL GD YPGG LF+PL L +D
Sbjct: 225 ICQVLLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGTLFDPLNLSEDPV 274
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+ +D K+KE+KNGRLAM+A LG++ Q TG GP QNL+DH++DP++NN+L L+
Sbjct: 275 AFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLLAMLQ 329
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 85/170 (50%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K G E WF+ G I G +Y +P +
Sbjct: 109 MLGALGCITPELLAKNGTPIVEPV--WFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAV 166
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G D +PGG F+PLGL +D +
Sbjct: 167 QVILMGAIEGYR----VNGGPAGEGL------------DKLHPGGQFFDPLGLAEDPDAF 210
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL +HLA P +N T
Sbjct: 211 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLANLDEHLASPFTSNAFT 260
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 88/175 (50%), Gaps = 28/175 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G E WF+ G I G +Y +P
Sbjct: 110 MLGALGCVTPELLAKNGTPIAEPV--WFKAGAQIFQEGGLDYLGNPGLVHAQSILATLAC 167
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G D +PGGP F+PL L +D +
Sbjct: 168 QVILMGAIEGFR----VNGGPAGEGL------------DKLHPGGPWFDPLALAEDPDAF 211
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL HLA+P VNN + KF
Sbjct: 212 AELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIENLESHLANPGVNNAFAFATKF 266
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 81 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 139
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 140 ENLADHLADPVNNN 153
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K + A+ WF+ G I G NY +
Sbjct: 90 MLGALGCVTPELLSKYAGVSFGEAV-WFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAF 148
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 149 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 191
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P N
Sbjct: 192 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFA 241
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 90/175 (51%), Gaps = 29/175 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K+G E WF+ G I G +Y +P + +
Sbjct: 95 MLGALGCLTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 153 QVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNG LAM ++ G+FVQ +VTG GP QNL DHLA+P VNN + KF
Sbjct: 196 AELKVKEIKNGALAMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKF 250
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K + A+ WF+ G I G NY +
Sbjct: 91 MLGALGCVTPELLSKYAGVSFGEAV-WFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAF 149
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 150 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 192
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P N
Sbjct: 193 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFA 242
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K + A+ WF+ G I G NY +
Sbjct: 91 MLGALGCVTPELLSKYAGVSFGEAV-WFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAF 149
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 150 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 192
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P N
Sbjct: 193 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFA 242
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K + A+ WF+ G I G NY +
Sbjct: 91 MLGALGCVTPELLSKYAGVSFGEAV-WFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAF 149
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 150 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 192
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P N
Sbjct: 193 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFA 242
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 27/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K + A+ WF+ G I G NY +
Sbjct: 92 MLGALGCVTPELLSKYAGVSFGEAV-WFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAF 150
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 151 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 193
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P N
Sbjct: 194 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAF 242
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 181 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 183 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
Query: 145 QNLLDHLADPVNNN 158
+NL DH+ADPVNNN
Sbjct: 242 ENLADHIADPVNNN 255
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 83 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 141
Query: 145 QNLLDHLADPVNNN 158
+NL DH+ADPVNNN
Sbjct: 142 ENLADHIADPVNNN 155
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 183 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
Query: 145 QNLLDHLADPVNNN 158
+NL DH+ADPVNNN
Sbjct: 242 ENLADHIADPVNNN 255
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 83 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 141
Query: 145 QNLLDHLADPVNNN 158
+NL DH+ADPVNNN
Sbjct: 142 ENLADHIADPVNNN 155
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE+L G +AW+ AG + Y+A +LF ++M L + E
Sbjct: 94 MLAVAGILVPELLSNIGFSWPGAGVAWYD------AGKFEYFAPASSLFGVQMLLFAWVE 147
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD+ PGS + K G+ +P YPGG +F+P G K + +K KLKE+K
Sbjct: 148 IRRYQDFVKPGSANQDPIFTNNKLPDGN-EPGYPGG-IFDPFGWSKGD--IKSLKLKEIK 203
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDH 150
NGRLAMLA G+ Q TG P +NL H
Sbjct: 204 NGRLAMLAFAGFIGQAYTTGTTPLKNLSTH 233
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDF 114
E R + D S G + ++ G+ P Y G L F+PL LG+D +K +
Sbjct: 23 EAREWIDAWKSKSGGAKRDAALPSWMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWY 82
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVG 142
E+ N R AMLA+ G V L++ +G
Sbjct: 83 AQAELMNARFAMLAVAGILVPELLSNIG 110
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 100 MLGALGCITPEVLQKWVNVNFKEPV-WFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGF 158
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G + G+G+ YPGG F+PLGL D +
Sbjct: 159 QVLLMGAVEGFRIN--------------GLDGV--GNGNDLYPGGQYFDPLGLADDPVTF 202
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +N LDHL +PV NN
Sbjct: 203 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENWLDHLDNPVANN 249
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 89/170 (52%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ P L V E+
Sbjct: 121 MLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVIAEVV 179
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 180 LLGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAAIL 220
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 221 KAKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 270
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 27/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K + A+ WF+ G I G NY +
Sbjct: 110 MLGALGCVTPELLSKYAGVSFGEAV-WFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAF 168
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE R AN G +G DP +PGG F+PLGL D +
Sbjct: 169 QVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTF 211
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P N
Sbjct: 212 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAF 260
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 90/170 (52%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMA 54
MLGA GA+ PE K G A+ WF+TG + G T +Y+ + P L V E+
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAV-WFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVV 59
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 60 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAAIL 100
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 101 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 150
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 90/170 (52%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMA 54
MLG G I PE K G A+ WF+TG + G T NY+ + P L + E+
Sbjct: 103 MLGVAGFIIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLILAVIAEVV 161
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 162 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAALL 202
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 203 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 252
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 29/175 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G+ Q WF+ G I G NY +P + +
Sbjct: 95 MLGALGIVTPELLQKNGV--QFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAV 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ L+G E R N G G DP YPG F+PLGL D +
Sbjct: 153 QVVLLGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM + G+FVQ +VTG GP QNL DHL++P VNN + K+
Sbjct: 196 AELKVKEIKNGRLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFAFATKY 250
>gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-1A, partial [Solanum
lycopersicum]
gi|170414|gb|AAA34152.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 116
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 32 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 91 ENLADHLADPVNNN 104
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 91/169 (53%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMA 54
MLGA G I PE L K G A+ WF+TG + G T +Y+ P L V E+
Sbjct: 125 MLGAAGCIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLSYFGKNIPINLVLAVVGEVV 183
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PL L KD +
Sbjct: 184 LLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLDLAKDPEQGALL 224
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVI 273
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 25/169 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTLFVL-------- 51
MLGA+G I PEIL + E + WF+ G ++ + +Y P +
Sbjct: 183 MLGALGCIFPEILAMNYGVGLEEPV-WFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAA 241
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R A G E++ D +PGG FNPL GKDE +
Sbjct: 242 QVLLMGGAEAYRASGVAPNG----------EEF-----DKMHPGGYYFNPLKFGKDEADL 286
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++LG+++Q TG GP QNL+DH AD N N+
Sbjct: 287 AELKVKEIKNGRLAMFSMLGFYIQAATTGNGPLQNLVDHRADAANENIF 335
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 32 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 91 ENLADHLADPVNNN 104
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 85/151 (56%), Gaps = 13/151 (8%)
Query: 1 MLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALMGF 58
MLGA G I I K GL P+ W+ G V+ ++ TL V++ LMG+
Sbjct: 80 MLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVEKNNIDF----PTLMVIQFYLMGW 130
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLK 117
AE +R+ D+ NPGS FLGF + G + YPGG F+P+GL + D +++K K
Sbjct: 131 AETKRWYDFKNPGSQADGSFLGFTEEFKGL-ENGYPGGRFFDPMGLSRGDAAKYQEYKQK 189
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 148
EVKNGRLAM+A LG+ Q TG GP NL+
Sbjct: 190 EVKNGRLAMIACLGFAAQYAATGKGPLDNLV 220
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 89/169 (52%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYW---ADPYTLF---VLEMA 54
MLGA G I PE K G A+ WF+TG + G Y+ P L + E+
Sbjct: 129 MLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLYYFGKNIPINLVLAVIAEVV 187
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 188 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQAAIL 228
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 229 KVKEIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVI 277
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 87/164 (53%), Gaps = 17/164 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L KAGL+ A W + G Y+A T + M+ + E
Sbjct: 83 MLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMSST-YVE 133
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F+ Y + YPG +FNPL E K KE+
Sbjct: 134 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGR-VFNPLNFAPLEN-----KEKELA 185
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
NGRLAMLA LG+ VQ V G GP++NL HLADP +N ++ ++
Sbjct: 186 NGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTIS 229
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 83 KYLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137
+L G PAY G L F+PL L +D + ++ F +V NGR AML + G + +
Sbjct: 35 SWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEV 94
Query: 138 VTGVG 142
+T G
Sbjct: 95 LTKAG 99
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 93/169 (55%), Gaps = 27/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWAD--PYTLFVL---EMA 54
MLGA G + PE K G A+ WF+TG ++ GT NY+ P L + E+
Sbjct: 118 MLGAAGFVIPEAFNKFGAQCGPEAV-WFKTGALLLDGGTLNYFGANIPINLVLAVLAEVI 176
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + LG ++ +PGGP F+PLGL KD +
Sbjct: 177 LVGGAEYYRSIN-----------NLGLDRL--------HPGGP-FDPLGLAKDPDNFALL 216
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG+F+Q TG GP +NL HL+DP NN+L+ +
Sbjct: 217 KVKEIKNGRLAMFAMLGFFIQAYATGEGPVENLTTHLSDPFGNNLLSVI 265
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 90/170 (52%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMA 54
MLGA GA+ PE K G A+ WF+TG + G T +Y+ + P L V E+
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAV-WFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVV 183
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 184 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAAIL 224
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 274
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 92/175 (52%), Gaps = 29/175 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G +P A+ WF+ G I G NY +P + +
Sbjct: 86 MLGALGIVTPELLAKNG-VPFGEAV-WFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAV 143
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ L+G E R N G G DP YPG F+PLGL D +
Sbjct: 144 QVILLGLVEGYR----VNGGPAGEGL------------DPLYPG-ESFDPLGLADDPDTF 186
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM + G+FVQ +VTG GP QNL DHL++P VNN + K+
Sbjct: 187 AELKVKEIKNGRLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFAFATKY 241
>gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
gi|170426|gb|AAA34157.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 116
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 32 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
Query: 145 QNLLDHLADPVNNN 158
+NL DH+ADPVNNN
Sbjct: 91 ENLADHIADPVNNN 104
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 85/169 (50%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA+G PE+L K+G E WF+ G I G +Y +P + +
Sbjct: 94 MLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAV 151
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 152 QVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTF 194
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLA ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 195 AELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 243
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG + Y+ D TLF++E+ L+G+AE
Sbjct: 109 MLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEHQYFTDTTTLFIIELILIGWAE 159
Query: 61 HRRFQDWA-NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKE 118
RR+ D NPG + ++ G P G +PLG G + +K+ + KE
Sbjct: 160 GRRWADIIINPGCVNTDPIFPQQQVHGHRR--GEPCGLWLDPLGWGTVSPEKIKELRTKE 217
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+KNGR+AMLA++G + Q TG GP N H+ADP + + +
Sbjct: 218 IKNGRVAMLAVMGAWFQAEHTGTGPIDNFFAHVADPGHATIFQAF 262
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
D + PG F+PLGLG D +S++ ++ + R AML G F+ +T +G
Sbjct: 73 DGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAGIFIPEFLTKIG 125
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 21/169 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTL-----FVLEMAL 55
MLGA G + PE K G + A+ W ++ + Y+ L + E+ L
Sbjct: 66 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIAEVIL 125
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G AE+ R + + LG D +PGG F+PLGL KD K
Sbjct: 126 VGGAEYYRSTN---------------KSPLGSDLDRLHPGGA-FDPLGLAKDPDQFALLK 169
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+KE+KNGRLAM ++LG+FVQ VTG GP +NL HL+DP NN+LT ++
Sbjct: 170 VKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLSAHLSDPFGNNLLTVIQ 218
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 92/175 (52%), Gaps = 25/175 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G + PE+L K G P WF+ G I NY +P +
Sbjct: 86 MLGALGCVVPELLAKNG-TPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAF 144
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ +MG AE RF A PG +L G+ D YPG F+P+GL +D +
Sbjct: 145 QVVVMGAAESFRFNGGA-PGG-----------FLEGN-DRLYPGDQ-FDPMGLAEDPDTF 190
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HLADP VNN + KF
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLADPSVNNAWAAATKF 245
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 93/169 (55%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE L K G A+ WF+TG + G T NY+ + V E+
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 180
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD +
Sbjct: 181 LLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALL 221
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 222 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 93/169 (55%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE L K G A+ WF+TG + G T NY+ + V E+
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 180
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD +
Sbjct: 181 LLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALL 221
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 222 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 26/167 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------YTLFVL-- 51
MLGA+G I PE+L K + + + WF+ G I G +Y +P L VL
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R PG G G+ YPGG F+PLGL D +
Sbjct: 165 QVILMGLVEGYRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ +FVQ +VTG G +NLLDH+ +PV NN
Sbjct: 209 AELKVKEIKNGRLAMFSMFRFFVQAIVTGKGSLENLLDHIDNPVANN 255
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 41 LGEVIDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 99
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 100 ENLADHLADPVNNN 113
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 85/168 (50%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G I PE+L K G +P A+ WF+ G I G NY + +
Sbjct: 97 MLGALGCITPELLAKNG-VPFGEAV-WFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 154
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 155 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPG-EAFDPLGLADDPDTF 197
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HL+DP NN
Sbjct: 198 AELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNNA 245
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 86/167 (51%), Gaps = 27/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G QE W++ G I + +Y P +
Sbjct: 52 MLGALGCLTPELLSQNGFTFQEPV--WWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAV 109
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R A PG G D YPGGP F+PL D ++
Sbjct: 110 QVILMGSAEAYRAAGSA-PGVDGL--------------DKLYPGGP-FDPLEFASDPDTL 153
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA P NN
Sbjct: 154 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLASPYANN 200
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 47 LGEVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 105
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 106 ENLADHLADPVNNN 119
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 18/175 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP----------YTLF 49
ML A G + PE L G WF+TG + GT NY+A P + +
Sbjct: 109 MLAAAGILIPEGLQANG--ANIKGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI 166
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
+E+ LMG E R G G +G F+ + D YPGGP F+PLGL D
Sbjct: 167 AIEVGLMGAVEFYRRN---GTGPAGYSPGIGKFDSSVFEGLDSIYPGGP-FDPLGLADDP 222
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ ++ K+KE+KNGRLAM+++L + +Q VTG GPY N + H+ DP N+LT L
Sbjct: 223 EVFQELKVKEIKNGRLAMVSVLAFAIQSYVTGEGPYTNWIKHVQDPFGYNLLTVL 277
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 85/168 (50%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVL 51
MLGA+G I PE+L K G +P A+ WF+ G I G NY + +
Sbjct: 96 MLGALGCITPELLAKNG-VPFGEAV-WFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 153
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 154 QVILMGLVEGYR----VNGGPAGEGL------------DPLYPG-EAFDPLGLADDPDTF 196
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HL+DP NN
Sbjct: 197 AELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNNA 244
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 69 LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 127
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 128 ENLADHLADPVNNN 141
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 45 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 103
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 104 ENLADHLADPVNNN 117
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 88/169 (52%), Gaps = 28/169 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+LG G +P A+ WF+ G I G +Y + +
Sbjct: 91 MLGALGCIFPELLGSYG-VPFGEAV-WFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGT 148
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G +G D YPGG F+PLGL D +
Sbjct: 149 QVLLMGAIEGYR----VNGGPLGEGL------------DKLYPGGS-FDPLGLADDPDTF 191
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 192 SELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAF 240
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 31/169 (18%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTG-VIPPAGTYNYWADPY---------TLF 49
MLG +G PE L K +G+ E+ WF+ G I G +Y +P T+F
Sbjct: 101 MLGTLGCFLPEALEKYSGINFGESV--WFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVF 158
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LMG E R P LG +GD YPGG F+PLGLG D
Sbjct: 159 IQAL-LMGLVEGYRVG--GGP--------------LGEAGDKMYPGGS-FDPLGLGDDPD 200
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
++ + K+KE+KNGRLAM ++ GYF+Q +VTG GP +NL HLADP NN
Sbjct: 201 TLAELKVKEIKNGRLAMFSMFGYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|356532722|ref|XP_003534920.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 125
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 41 LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 99
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 100 ENLADHLADPVNNN 113
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 22/175 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+GA+ PE+ G W++ G G T Y P +
Sbjct: 163 MLAALGALIPEVFDLTGTF-HFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIA 221
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ ++ LM E+ R+ G + YL GD YPGG LF+PL L +D
Sbjct: 222 ICQVLLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGTLFDPLNLSEDPV 271
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+ +D K+KE+KNGRLAM+A LG++ Q TG GP QNL+DH++DP++NN++ L+
Sbjct: 272 AFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQ 326
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 60 LGEVVDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 118
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 119 ENLADHLADPVNNN 132
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 31/169 (18%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTG-VIPPAGTYNYWADPY---------TLF 49
MLG +G PE L K +G+ E+ WF+ G I G +Y +P T+F
Sbjct: 101 MLGTLGCFLPEALEKYSGINFGESV--WFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVF 158
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
+ + LMG E R P LG +GD YPGG F+PLGLG D
Sbjct: 159 IQAL-LMGLVEGYRVG--GGP--------------LGEAGDKMYPGGS-FDPLGLGDDPD 200
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
++ + K+KE+KNGRLAM ++ GYF+Q +VTG GP +NL HLADP NN
Sbjct: 201 TLAELKVKEIKNGRLAMFSMFGYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 145 LGEVIDPLYPGGS-FDPLGLADDPEAFVELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 203
Query: 145 QNLLDHLADPVNNNV 159
+NL DHLADPVNNN
Sbjct: 204 ENLADHLADPVNNNA 218
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 93/169 (55%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE L K G A+ WF+TG + G T NY+ + V E+
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 180
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G +E+ R + L FE D +PGGP F+PLGL KD +
Sbjct: 181 LLGGSEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALL 221
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 222 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 86/172 (50%), Gaps = 29/172 (16%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 50
+LGA+G + PE+L AG+ E WF+ G I G +Y P +
Sbjct: 96 LLGALGILTPELLSTYAGVKFGEPV--WFKAGAQIFSEGGLDYLGSPALIHAQNIVATLA 153
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
+++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 154 VQVVLMGLIEGYRV----NGGPAGEGL------------DPLYPGES-FDPLGLADDPDT 196
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM + G+FVQ +VTG GP QNL DHLADP NN +
Sbjct: 197 FAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAA 248
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 182 LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 145 QNLLDHLADPVNNNVLT 161
+NL DHL+DPVNNN +
Sbjct: 241 ENLADHLSDPVNNNAWS 257
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 88/171 (51%), Gaps = 24/171 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGAVG PE L + + Q WF+ G I A NY+ P +
Sbjct: 526 MLGAVGCFLPEYLNRFFGV-QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILAT 584
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + A PG G D YPGGP F+PLGL D +
Sbjct: 585 QVLLMGAVEAYRAGNTA-PGQFGEDL------------DRLYPGGP-FDPLGLADDPDTF 630
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM+A+LG++ Q +VTG GP +N L HL DP +N LT+
Sbjct: 631 AELKVKEIKNGRLAMMAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 681
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 88/171 (51%), Gaps = 24/171 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGAVG PE L + + Q WF+ G I A NY+ P +
Sbjct: 42 MLGAVGCFLPEYLNRFFGV-QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILAT 100
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + A PG G D YPGGP F+PLGL D +
Sbjct: 101 QVLLMGAVEAYRAGNTA-PGQFGEDL------------DRLYPGGP-FDPLGLADDPDTF 146
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM+A+LG++ Q +VTG GP +N L HL DP +N LT+
Sbjct: 147 AELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 197
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 89/171 (52%), Gaps = 25/171 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY------TLFVL-- 51
MLGA+G + PE L + IP + WF+ G I G +Y D L +L
Sbjct: 283 MLGALGVVFPEYLSRNFDIPIAEPV-WFKAGAQIFSEGGLDYLGDARLVHAQSILLILGT 341
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R + G+ G+ D YPGGP F+PLGL D ++
Sbjct: 342 QVLLMGAAEAYRTGN--GLGNFGKDL------------DSLYPGGP-FDPLGLANDPDTL 386
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM A+ G++VQ +VTG P +NL HLA P N L +
Sbjct: 387 AELKVKEIKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFTVNGLNA 437
>gi|167997433|ref|XP_001751423.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697404|gb|EDQ83740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 160 LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 218
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPV NN
Sbjct: 219 ENLNDHLADPVANN 232
>gi|169199|gb|AAA33703.1| Major Cab protein [Petunia x hybrida]
Length = 136
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP+
Sbjct: 52 LGEVIDPLCPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPF 110
Query: 145 QNLLDHLADPVNNNVLT 161
+NL DHLADPVNNN +
Sbjct: 111 ENLADHLADPVNNNAWS 127
>gi|53793542|dbj|BAD52991.1| a/b-binding protein precursor-like [Oryza sativa Japonica Group]
Length = 98
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 14 LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 73 ENLADHLADPVNNN 86
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 88/168 (52%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 48 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 105
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 106 QVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 148
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP + LADPVNNN
Sbjct: 149 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPPREPRRPLADPVNNNA 196
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 86/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 108 MLGALGCVTPELLAKNGIKFGEAV--WFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWAS 165
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG D YPGG F+PLGL D +
Sbjct: 166 QVILMGAVEGYRVG--GGP--------------LGEGLDKIYPGG-AFDPLGLADDPDTF 208
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+F Q +VTG GP +NLLDHL +P NN
Sbjct: 209 AELKVKELKNGRLAMFSMFGFFTQAIVTGKGPIENLLDHLDNPTVNNA 256
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 88/171 (51%), Gaps = 24/171 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGAVG PE L + + Q WF+ G I A NY+ P +
Sbjct: 299 MLGAVGCFLPEYLNRFFGV-QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILAT 357
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + A PG G D YPGGP F+PLGL D +
Sbjct: 358 QVLLMGAVEAYRAGNTA-PGQFGEDL------------DRLYPGGP-FDPLGLADDPDTF 403
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM+A+LG++ Q +VTG GP +N L HL DP +N LT+
Sbjct: 404 AELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 454
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 89/171 (52%), Gaps = 25/171 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY------TLFVL-- 51
MLGA+G + PE L + IP + WF+ G I G +Y D L +L
Sbjct: 56 MLGALGVVFPEYLSRNFDIPIAEPV-WFKAGAQIFSEGGLDYLGDARLVHAQSILLILGT 114
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R + G+ G+ D YPGGP F+PLGL D ++
Sbjct: 115 QVLLMGAAEAYRTGN--GLGNFGKDL------------DSLYPGGP-FDPLGLANDPDTL 159
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM A+ G++VQ +VTG P +NL HLA P N L +
Sbjct: 160 AELKVKEIKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFTVNGLNA 210
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALMGF- 58
MLGA G I PE L K G A+ WF+TG + G T NY+ + + ++ +
Sbjct: 128 MLGAAGFIIPEALNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLILAVVAEVV 186
Query: 59 ----AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
AE+ R + L F+ D +PGGP F+PLGL D
Sbjct: 187 LVGGAEYYRITNG-----------LEFD-------DKLHPGGP-FDPLGLATDPDQAALL 227
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++LG+F+Q VTG GP++NL HL+DP NN+LT +
Sbjct: 228 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPFENLCAHLSDPFGNNLLTVIS 277
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 84/161 (52%), Gaps = 28/161 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 152
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 87/166 (52%), Gaps = 29/166 (17%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV-------- 50
MLGA+G + PEIL K AG+ E+ WF+ G I G +Y +P +
Sbjct: 70 MLGALGCVTPEILAKYAGVSCGESV--WFKAGSQIFQEGGLDYLGNPSLVHAQSILAILG 127
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R N G +G DP +PG F+PLGL D +
Sbjct: 128 CQVVLMGLIEAYR----VNGGPLGEGL------------DPLHPGDK-FDPLGLADDPDT 170
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 156
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +N DH+ADP N
Sbjct: 171 FAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFN 216
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 84/161 (52%), Gaps = 28/161 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 152
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 88/174 (50%), Gaps = 27/174 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP--------YTLFVLE 52
MLGA+G + PE+L K G+ E A+ W I G +Y +P + +
Sbjct: 92 MLGALGCVTPELLAKNGVSFGE-AVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQ 150
Query: 53 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 112
+ LMG E R N G G D YPG F+PLGL D +
Sbjct: 151 VLLMGLIEGYR----VNGGPAGEGL------------DALYPG-EAFDPLGLADDPDTFA 193
Query: 113 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ ++KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P VNN + KF
Sbjct: 194 ELRVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLANPSVNNGFAAATKF 247
>gi|211953347|gb|ACJ13835.1| chlorophyll binding protein [Helianthus annuus]
Length = 116
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 49 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
F++E+ +G+AE RR+ D PG + K G D YPGG F+PLG G
Sbjct: 1 FIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGS 58
Query: 109 KS-MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+ +K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + + K
Sbjct: 59 PAKLKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAFK 115
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD--PYTL---FVLEMAL 55
MLGA G + PE K G + A+ W ++ + Y+ P L + E+ L
Sbjct: 108 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIAEVIL 167
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G AE+ R N G Q D +PGG F+PLGL KD K
Sbjct: 168 VGGAEYYRS---TNKDVYGLQDL-----------DRLHPGGA-FDPLGLAKDPDQFALLK 212
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+KE+KNGRLAM ++LG+FVQ VTG GP +NL HL+DP NN+LT ++
Sbjct: 213 VKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVIQ 261
>gi|211953323|gb|ACJ13823.1| chlorophyll binding protein [Helianthus annuus]
gi|211953325|gb|ACJ13824.1| chlorophyll binding protein [Helianthus annuus]
gi|211953327|gb|ACJ13825.1| chlorophyll binding protein [Helianthus annuus]
gi|211953329|gb|ACJ13826.1| chlorophyll binding protein [Helianthus annuus]
gi|211953331|gb|ACJ13827.1| chlorophyll binding protein [Helianthus annuus]
gi|211953333|gb|ACJ13828.1| chlorophyll binding protein [Helianthus annuus]
gi|211953335|gb|ACJ13829.1| chlorophyll binding protein [Helianthus annuus]
gi|211953337|gb|ACJ13830.1| chlorophyll binding protein [Helianthus annuus]
gi|211953339|gb|ACJ13831.1| chlorophyll binding protein [Helianthus annuus]
gi|211953341|gb|ACJ13832.1| chlorophyll binding protein [Helianthus annuus]
gi|211953349|gb|ACJ13836.1| chlorophyll binding protein [Helianthus annuus]
gi|211953351|gb|ACJ13837.1| chlorophyll binding protein [Helianthus annuus]
gi|211953353|gb|ACJ13838.1| chlorophyll binding protein [Helianthus annuus]
gi|211953355|gb|ACJ13839.1| chlorophyll binding protein [Helianthus annuus]
gi|211953357|gb|ACJ13840.1| chlorophyll binding protein [Helianthus annuus]
gi|211953359|gb|ACJ13841.1| chlorophyll binding protein [Helianthus annuus]
gi|211953361|gb|ACJ13842.1| chlorophyll binding protein [Helianthus annuus]
gi|211953363|gb|ACJ13843.1| chlorophyll binding protein [Helianthus annuus]
gi|211953365|gb|ACJ13844.1| chlorophyll binding protein [Helianthus annuus]
gi|211953367|gb|ACJ13845.1| chlorophyll binding protein [Helianthus annuus]
gi|211953369|gb|ACJ13846.1| chlorophyll binding protein [Helianthus annuus]
gi|211953371|gb|ACJ13847.1| chlorophyll binding protein [Helianthus annuus]
gi|211953373|gb|ACJ13848.1| chlorophyll binding protein [Helianthus annuus]
gi|211953375|gb|ACJ13849.1| chlorophyll binding protein [Helianthus annuus]
gi|211953377|gb|ACJ13850.1| chlorophyll binding protein [Helianthus petiolaris]
gi|211953379|gb|ACJ13851.1| chlorophyll binding protein [Helianthus petiolaris]
Length = 116
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 49 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
F++E+ +G+AE RR+ D PG + K G D YPGG F+PLG G
Sbjct: 1 FIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGTGS 58
Query: 109 KS-MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+ +K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + + K
Sbjct: 59 PAKLKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAFK 115
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 93/177 (52%), Gaps = 23/177 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 49
ML A+G + PE+L + G + Q + W++ G G T +Y P +
Sbjct: 183 MLAALGVVIPELLDRFGGV-QFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIA 241
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 109
++ LM E+ R+ +G FL GD YPGG LF+PLGL KD
Sbjct: 242 FCQVILMLGPEYARYCGIEALEPLG--IFL--------PGDVNYPGGALFDPLGLTKDAA 291
Query: 110 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
+ +D K+KE+KNGRLAM+A LG++VQ LVT GP NL D L DP++ N L + FH
Sbjct: 292 AFEDLKVKEMKNGRLAMVAWLGFYVQALVTQKGPIDNLFDFLEDPLHQN-LFAYAFH 347
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 90/169 (53%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALM--- 56
MLGA G I PE K G A+ WF+TG ++ GT +Y+ + ++ +
Sbjct: 144 MLGAAGFIIPEAFNKFGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVV 202
Query: 57 --GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
G AE+ R + N F+ D +PGGP F+PLGL KD
Sbjct: 203 LVGGAEYYRATNGLN-----------FD-------DKLHPGGP-FDPLGLAKDPDQFALL 243
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT L
Sbjct: 244 KVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVL 292
>gi|375152320|gb|AFA36618.1| chlorophyll a/b binding protein, partial [Lolium perenne]
Length = 91
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 7 LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 65
Query: 145 QNLLDHLADPVNNNV 159
+NL DHLADPVNNN
Sbjct: 66 ENLADHLADPVNNNA 80
>gi|159138421|gb|ABW89213.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138423|gb|ABW89214.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138425|gb|ABW89215.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138429|gb|ABW89217.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138433|gb|ABW89219.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138437|gb|ABW89221.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138439|gb|ABW89222.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138441|gb|ABW89223.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138443|gb|ABW89224.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138445|gb|ABW89225.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138447|gb|ABW89226.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138451|gb|ABW89228.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138453|gb|ABW89229.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138455|gb|ABW89230.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138457|gb|ABW89231.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 32 LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPV NN
Sbjct: 91 ENLADHLADPVANN 104
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 130 aa]
Length = 130
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 66/112 (58%), Gaps = 18/112 (16%)
Query: 47 TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK 106
++ ++ LMGF E R +P G DP YPGG F+PLGL
Sbjct: 25 AIWACQVVLMGFVEGYRIA--GDPS---------------GGLDPLYPGGA-FDPLGLAD 66
Query: 107 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 67 DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVNNN 118
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 27/171 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 173 MLGALGCVTPELLAKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 231
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G G D PGG F+PLGL D +
Sbjct: 232 QVILMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPDTF 274
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N LT+
Sbjct: 275 AELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLTN 325
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PEIL K G ++ WF+ G I G +Y P + +
Sbjct: 91 MLGALGCVTPEILAKYGGTSFGESV-WFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVIS 149
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 150 QVILMGLIEGYR----VNGGPAGEGL------------DPLYPG-ESFDPLGLADDPDTF 192
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP N +
Sbjct: 193 AELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPFTANAFS 242
>gi|159138427|gb|ABW89216.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138431|gb|ABW89218.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138435|gb|ABW89220.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 32 LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPV NN
Sbjct: 91 ENLADHLADPVANN 104
>gi|339716018|gb|AEJ88256.1| putative light harvesting chlorophyll a/b-binding protein [Wolffia
australiana]
Length = 92
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PL L +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 8 LGEVVDPLYPGGS-FDPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 66
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 67 ENLADHLADPVNNN 80
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 27/171 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 186 MLGALGCVTPELLAKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 244
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G G D PGG F+PLGL D +
Sbjct: 245 QVILMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPDTF 287
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
+ K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N LT+
Sbjct: 288 AELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLTN 338
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 85/163 (52%), Gaps = 24/163 (14%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+L K + A+ WF+ G I G NY +P V+
Sbjct: 94 MLGALGCIFPEVLEKYSGVEFGEAV-WFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVV 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G G D YPGG F+PLGL D ++
Sbjct: 153 QVLLMGAVEIYRANGEGPSG-------------FGEGQDNLYPGGA-FDPLGLADDPDTL 198
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
+ K+KE+KNGRLAM+++LG+FVQ +VTG GP NLL HL +P
Sbjct: 199 AELKVKELKNGRLAMMSMLGFFVQAIVTGKGPLDNLLTHLEEP 241
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWA---DPYTL---FVLEMA 54
MLG VG + PE L G + A+ W V+ WA +P L + E+A
Sbjct: 117 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVA 176
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ E+ R+Q + G DP YPGG F+PLGL D +
Sbjct: 177 VFFLIENYRYQQ---------------DGPWGTGLDPLYPGGKYFDPLGLASDPSKADEL 221
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM+A LG+ VQ VT GPY N HLADP N LT L
Sbjct: 222 KVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLTIL 270
>gi|351066141|gb|AEQ39045.1| putative light-harvesting complex II chlorophyll-a/b binding
protein [Wolffia arrhiza]
Length = 84
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 86 GGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 145
G DP YPGG F+PL L +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +
Sbjct: 1 GEVTDPLYPGGS-FDPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 59
Query: 146 NLLDHLADPVNNNV 159
NL DHLADPVNNN
Sbjct: 60 NLADHLADPVNNNA 73
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWA---DPYTL---FVLEMA 54
MLG VG + PE L G + A+ W V+ WA +P L + E+A
Sbjct: 124 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVA 183
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ E+ R+Q + G DP YPGG F+PLGL D +
Sbjct: 184 VFFLIENYRYQQ---------------DGPWGTGLDPLYPGGKYFDPLGLASDPSKADEL 228
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM+A LG+ VQ VT GPY N HLADP N LT L
Sbjct: 229 KVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLTIL 277
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PEIL K G ++ WF+ G I G +Y P + +
Sbjct: 88 MLGALGCVTPEILAKYGGTSFGESV-WFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVIS 146
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 147 QVILMGLIEGYR----VNGGPAGEGL------------DPLYPG-ESFDPLGLADDPDTF 189
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP N +
Sbjct: 190 AELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADPFTANAFS 239
>gi|1165248|gb|AAA85589.1| chlorophyll a/b binding protein of PS II, partial [Picea abies]
Length = 131
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 47 LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 105
Query: 145 QNLLDHLADPVNNN 158
NL DHLADPVNNN
Sbjct: 106 XNLADHLADPVNNN 119
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG + D YPG F+PLGL KDE + + K+KEVKNGRLAML +LG F+QG TG GP
Sbjct: 4 LGPATDLVYPG-KAFDPLGLSKDETAFAELKVKEVKNGRLAMLGMLGLFMQGFATGKGPL 62
Query: 145 QNLLDHLADPVNNNVLTSLKFH 166
QNL DHLADP N++T FH
Sbjct: 63 QNLADHLADPTGANIIT---FH 81
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 22/127 (17%)
Query: 28 FQTGVIPPAGTYNYWADPYTLFVLEM----------ALMGFAEHRRFQDWANPGSMGRQY 77
F TG P ++ ADP ++ M A + DW P R+
Sbjct: 55 FATGKGPLQNLADHLADPTGANIITFHQRVLSDLGGVAMFAATGEKLSDWYGPN---RKL 111
Query: 78 FLG-----FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 132
FLG ++L G PG F+ LGL ++ ++ E+ NGR AML I+G
Sbjct: 112 FLGPLSDGAPEHLKGE----LPGDYGFDVLGLATQPTRLERYRQGEIINGRWAMLGIVGC 167
Query: 133 FVQGLVT 139
V L+
Sbjct: 168 IVPELLA 174
>gi|159138449|gb|ABW89227.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 32 LGEVVDPLYPGGS-FDPLGLADDPXAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPV NN
Sbjct: 91 ENLADHLADPVANN 104
>gi|162423646|gb|ABX89589.1| Lhca3 [Solanum tuberosum]
gi|162423648|gb|ABX89590.1| Lhca3 [Solanum tuberosum]
Length = 45
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/45 (95%), Positives = 44/45 (97%)
Query: 122 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
GRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 1 GRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 45
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 79/163 (48%), Gaps = 28/163 (17%)
Query: 8 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGF 58
+ PE+L G+ E WF+ G I G NY +P + +++ LMG
Sbjct: 1 VTPELLAANGVSFGEPV--WFKAGAQIFQDGGLNYLGNPSLIHAQNIVATLAVQVILMGL 58
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
E R N G G DP YPG F+PLGL D + + K+KE
Sbjct: 59 VEGYRM----NGGPAGEGL------------DPLYPG-EAFDPLGLADDPDTFAELKVKE 101
Query: 119 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+KNGRLAM + G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 102 IKNGRLAMFSCFGFFVQAIVTGKGPIQNLTDHLANPAENNAFA 144
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALM--- 56
MLGA G I PE K G A+ WF+TG + G T NY+ + + ++
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVV 59
Query: 57 --GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 60 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAALL 100
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 101 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 150
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PEIL + G ++ WF+ G I G +Y P + +
Sbjct: 38 MLGALGCVTPEILARYGGTSFGESV-WFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVIS 96
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 97 QVILMGLIEGYR----VNGGPAGEGL------------DPLYPG-ESFDPLGLADDPDTF 139
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP N +
Sbjct: 140 AELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADPFTANAFS 189
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 86/167 (51%), Gaps = 27/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K G A+ WF+ G I G +Y + + +
Sbjct: 85 MLGALGCVTPELLQKNGAANFGEAV-WFKAGAQIFQDGGLDYLGNANLVHAQSIVAVLLT 143
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G DP YPG F+PLGL D ++
Sbjct: 144 QIVLMGLIEGYRV----NGGPAGEIT------------DPIYPG-EAFDPLGLADDPDTL 186
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM+++ G+F+Q +VTG GP +NL DHLA P N
Sbjct: 187 AELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPIENLNDHLAAPGETN 233
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP Y GG F+PLGLG D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 180 LGEVVDPLYLGGS-FDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
Query: 145 QNLLDHLADPVNNN 158
+NL DHL DPVNNN
Sbjct: 239 ENLADHLTDPVNNN 252
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 20/176 (11%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALA---WFQTG-VIPPAGTYNYWADPYTLFVLEMALM 56
MLGA G + PEI K G+ LA W++ G V+ +G ++ + +T+F+L M
Sbjct: 80 MLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAGKVVAESGPWSMGSLTFTMFLL----M 135
Query: 57 GFAEHRRFQDWANPGS---------MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 107
G+AEH+R D+ PGS +G G E+ L + YPGG +F+P + K+
Sbjct: 136 GWAEHKRLYDFVKPGSQAVGWAWAPLGLGSITGVEEPLVAKEN-GYPGG-IFDPFQMSKN 193
Query: 108 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNVLTS 162
E K +K EV NGRLAM A+ G+ Q + G GP NL+DH+++P T+
Sbjct: 194 EAKYKWYKQSEVTNGRLAMTAMFGFVSQHIAYPGKGPIDNLVDHVSNPTKVTFATN 249
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALM--- 56
MLGA G I PE K G A+ WF+TG + G T NY+ + + ++
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVV 183
Query: 57 --GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 184 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAALL 224
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 225 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 274
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALM--- 56
MLGA G I PE K G A+ WF+TG + G T NY+ + + ++
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVV 183
Query: 57 --GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 184 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAALL 224
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 225 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 274
>gi|359754913|gb|AEV59646.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis arctobia]
Length = 142
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/47 (91%), Positives = 44/47 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYT 47
MLGA GAIAPEILGKAGLIP+ETAL WFQTGVIPPAGTYNYWAD YT
Sbjct: 96 MLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYT 142
>gi|305377030|dbj|BAJ15878.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 125
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 41 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 99
Query: 145 QNLLDHLADPVNNN 158
+NL D LADPVNNN
Sbjct: 100 ENLADGLADPVNNN 113
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALM--- 56
MLGA G I PE K G A+ WF+TG + G T NY+ + + ++
Sbjct: 43 MLGAAGFIIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVV 101
Query: 57 --GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 102 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAALL 142
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 143 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 192
>gi|359754925|gb|AEV59652.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis campestris subsp. johannensis]
Length = 144
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/48 (89%), Positives = 44/48 (91%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTL 48
MLGA GAIAPEILGKAGLIP+ETAL WFQTGVIPPAGTY YWAD YTL
Sbjct: 97 MLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYTYWADXYTL 144
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 90/169 (53%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G + PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 127 MLGAAGFVIPEAFNKFGADCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 185
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 186 LLGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQAAIL 226
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 227 KVKEIKNGRLAMFAMLGFFIQAYVTGKGPVENLAAHLSDPFGNNLLTVI 275
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALM--- 56
MLGA G I PE K G A+ WF+TG + G T NY+ + + ++
Sbjct: 64 MLGAAGFIIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVV 122
Query: 57 --GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 123 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAALL 163
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 164 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 213
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG VG + PE+ G G+ AW++ G + G+ +Y +P + + L+ F
Sbjct: 410 MLGLVGCLVPEVFGNLGIAQLP---AWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTT 466
Query: 61 HRRF---QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
F + W G + + + YPGGP F+PL LG + + KLK
Sbjct: 467 LLLFLPIEAWRWNGQIAPE--------AKSAERTTYPGGP-FDPLKLG----ASPELKLK 513
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
E+KNGRLAM+ + G++ Q VTG GP NL HLADP +NN+L ++
Sbjct: 514 EIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTV 559
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 29/171 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMA------ 54
MLG VG + PE+ G G+ AW+ + +Y +P + ++
Sbjct: 201 MLGLVGCLVPEVFGNLGIAQLP---AWYDAATVANTSNLDYLGNPNLVHASNVSFIALST 257
Query: 55 --LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 112
LMG E R+ G++ + + YPGGP F+PL LG +
Sbjct: 258 LLLMGPVEAWRWN-----GALASE--------AKSAERTTYPGGP-FDPLKLG----ASP 299
Query: 113 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ KLKE+KNGRLAM+ + G++ Q VTG GP NL HLADP +NN+L ++
Sbjct: 300 ELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTV 350
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 29/162 (17%)
Query: 10 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFA--------EH 61
PE+ G G+ AW++ G + G+ +Y +P + + L+ F E
Sbjct: 1 PEVFGNLGIAQLP---AWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEA 57
Query: 62 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 121
R+ P + +++ YPGGP F+PL LG + + KLKE+KN
Sbjct: 58 WRWNGQIAPDAKSKEW-------------TTYPGGP-FDPLKLG----ASPELKLKEIKN 99
Query: 122 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
GRLAM+ + G++ Q VTG GP NL HLADP +NN+L ++
Sbjct: 100 GRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTV 141
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 28 FQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 87
+ TG P A + ADP +L M A + W PG+ + G
Sbjct: 115 YVTGEGPLANLAAHLADPAHNNLLNTVAMFAASGEKRPTWF-PGAEAPTWLTG------- 166
Query: 88 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 145
YPG F+P GL KD F+ EV +GR AML ++G V + +G Q
Sbjct: 167 ----EYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLGIAQ 220
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 28 FQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 87
+ TG P A + ADP +L M A + W PG+ + G
Sbjct: 324 YVTGEGPLANLAAHLADPAHNNLLNTVAMFAASGEKRPTWF-PGAEAPAWLTG------- 375
Query: 88 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 145
YPG F+PLGL KD + + EV +GR AML ++G V + +G Q
Sbjct: 376 ----EYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLGIAQ 429
>gi|211953343|gb|ACJ13833.1| chlorophyll binding protein [Helianthus annuus]
gi|211953345|gb|ACJ13834.1| chlorophyll binding protein [Helianthus annuus]
Length = 116
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 49 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
F++E+ +G+AE RR+ D PG + K G D YPGG F+PLG G
Sbjct: 1 FIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGTGS 58
Query: 109 KS-MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+ +K+ + KE+KNG LAMLA++G + Q + TG GP NL HLADP + + + K
Sbjct: 59 PAKLKELRTKEIKNGSLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAFK 115
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 88/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 85/157 (54%), Gaps = 26/157 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMA 54
MLGA G I PE L K G A+ WF+TG + G T NY+ P L + E+
Sbjct: 13 MLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVIAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD +
Sbjct: 72 LLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151
K+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL
Sbjct: 113 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 28/161 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDAF 212
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 152
+ K+KE+KNGRLAM ++ G+F Q +VTG GP +NL DHLA
Sbjct: 213 AELKVKELKNGRLAMFSMFGFFXQAIVTGKGPIENLADHLA 253
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVLEMALM- 56
MLGA G I PE K G A+ WF+TG + G T NY+ P L V + +
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVTEVV 71
Query: 57 --GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 86/167 (51%), Gaps = 27/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L K + A+ WF+ G I G +Y + +
Sbjct: 91 MLGALGCVTPELLSKYAGVEFGEAV-WFKAGAQIFADGGLDYLGNSSLVHAQSILAILGC 149
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G +G D +PGG F+PLGL D +
Sbjct: 150 QVVLMGGAEAFR----VNGGPLGEDL------------DKLHPGGA-FDPLGLADDPDTF 192
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +N +H+ADP +N
Sbjct: 193 SELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENWAEHIADPSGSN 239
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 27/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G + ++ WF+ G I G +Y + +
Sbjct: 94 MLGALGCVTPEILSKYGGVSFGESV-WFKAGSQIFQEGGLDYLGNANLVHAQSILAILGC 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G +G DP YPG F+PLGL D +
Sbjct: 153 QVVLMGAIEAYR----VNGGPLGEGL------------DPLYPGDK-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +N +H+ADP + N
Sbjct: 196 AELKIKEIKNGRLAMFSMFGFFVQAVVTGKGPIENWAEHVADPFSVN 242
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 90/170 (52%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + + V E+
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAV-WFKTGALLLEGNTLNYFGNSIPINLAVAVVAEVV 183
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL D
Sbjct: 184 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAALL 224
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 225 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 274
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 85/169 (50%), Gaps = 27/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 170 MLGALGCVTPELLSKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLIHAQSILAILAC 228
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G G D PGG F+PLGL D +
Sbjct: 229 QVVLMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPDTF 271
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+ K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N L
Sbjct: 272 AELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPSGVNGL 320
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLG +G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 185 MLGTLGCVTPELLAKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 243
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G G D PGG F+PLGL D +
Sbjct: 244 QVILMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPDTF 286
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N LT
Sbjct: 287 AELKVKEIKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADPSGVNGLT 336
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 27/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLG +G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 186 MLGTLGCVTPELLAKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 244
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG AE R N G G D PGG F+PLGL D +
Sbjct: 245 QVILMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPDTF 287
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N LT
Sbjct: 288 AELKVKEIKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADPSGVNGLT 337
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 88/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIHINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 86/166 (51%), Gaps = 29/166 (17%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV-------- 50
MLGA+G + PEIL K AG+ E+ WF+ G I G +Y +P +
Sbjct: 66 MLGALGCVTPEILSKYAGVSFGESV--WFKAGSQIFQEGGLDYLGNPSLVHAQSILAILG 123
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R N G +G D +PG F+PLGL D +
Sbjct: 124 CQVVLMGLIEAYR----VNGGPLGEGL------------DTLHPGES-FDPLGLADDPDT 166
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 156
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +N DH+ADP N
Sbjct: 167 FAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFN 212
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 86/166 (51%), Gaps = 20/166 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVLEMALMG 57
MLGA G I PE K G A+ WF+TG + G T NY+ P L + +A +
Sbjct: 128 MLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLILAVVAEVV 186
Query: 58 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 117
+ N L E D +PGGP F+PLGL KD K+K
Sbjct: 187 LVGGAEYYRIING--------LDLE-------DKLHPGGP-FDPLGLAKDPDQAAILKVK 230
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
E+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 231 EIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVI 276
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 85/167 (50%), Gaps = 27/167 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L G+ A+ WF+ G I G +Y +P + +
Sbjct: 86 MLGALGCVTPELLQNNGVASFGEAV-WFKAGAQIFQEGGLDYLGNPSLIHAQSIVAVLLT 144
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G G D YPG F+PLGL D +
Sbjct: 145 QLTLMGLIEGYR----VNGGPAGEGL------------DALYPG-EAFDPLGLADDPDTF 187
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM+++ G+FVQG+VT GP +NL DHLA P N
Sbjct: 188 SELKVKELKNGRLAMVSMFGFFVQGIVTKKGPIENLNDHLASPDATN 234
>gi|914284|gb|AAB34068.1| light-harvesting complex b type 3, Lhcb3 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 132 aa]
Length = 132
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 52/72 (72%)
Query: 87 GSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 146
G G YPGG F+PLGL D + + K+KEVKNGRLAM ++ G+FVQ +VTG GP +N
Sbjct: 49 GEGGDLYPGGQYFDPLGLADDPDTFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLEN 108
Query: 147 LLDHLADPVNNN 158
LLDHL +PV NN
Sbjct: 109 LLDHLDNPVANN 120
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 88/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 88/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 88/169 (52%), Gaps = 26/169 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|209778997|gb|ACI87809.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 85
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 149
DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D
Sbjct: 6 DPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYD 64
Query: 150 HLADPVNNNV 159
HLADP NN
Sbjct: 65 HLADPSTNNA 74
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 54 LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGKGPI 112
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADP NN
Sbjct: 113 ENLYDHLADPSTNN 126
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 82/170 (48%), Gaps = 38/170 (22%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV------------IPPAGTYNYWADPYTL 48
MLGA+G + PE+L I AWF G IP G N + TL
Sbjct: 96 MLGALGCVVPELLDGTNHI------AWFNAGATIFSDDGLQYLGIP--GLINAKSIVATL 147
Query: 49 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
V ++ LM + E R P G D YPGG F+PLGL D
Sbjct: 148 IV-QVILMSYVEGYRVN--GGPAGTGL--------------DAVYPGGS-FDPLGLADDP 189
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ + K+KE+KNGRLAML++ G+F+Q +VTG GP +NL HLAD NN
Sbjct: 190 DTFSELKVKEIKNGRLAMLSMFGFFIQAIVTGEGPIENLNKHLADASANN 239
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 89/170 (52%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + + V E+
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAV-WFKTGALLLEGNTLNYFGNSIPINLAVAVVAEVV 183
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E L +PGGP F+PLGL D
Sbjct: 184 LVGGAEYYRIING-----------LDLEGKL-------HPGGP-FDPLGLASDPDQAAPL 224
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM +LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 225 KVKEIKNGRLAMFPMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 274
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 88/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL H++DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHMSDPFGNNLLTVIS 162
>gi|357496383|ref|XP_003618480.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355493495|gb|AES74698.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 180
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VT GP
Sbjct: 96 LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPL 154
Query: 145 QNLLDHLADPVNNN 158
+NL DH+ADPVN+N
Sbjct: 155 ENLADHIADPVNSN 168
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 126 MLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
M ++ G+FVQ +VTG GP +NL DH+ DPVNNN
Sbjct: 1 MFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 33
>gi|359754915|gb|AEV59647.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis arctobia]
Length = 141
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/46 (91%), Positives = 43/46 (93%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY 46
MLGA GAIAPEILGKAGLIP+ETAL WFQTGVIPPAGTYNYWAD Y
Sbjct: 96 MLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNY 141
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALMGF- 58
MLGA G I PE K G A+ WF+TG + G T NY+ + + ++ +
Sbjct: 128 MLGAAGFIIPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLILAVVAEVV 186
Query: 59 ----AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
AE+ R + L E D +PGGP F+PLGL D
Sbjct: 187 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAALL 227
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 228 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSAHLSDPFGNNLLTVIS 277
>gi|449527137|ref|XP_004170569.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like,
partial [Cucumis sativus]
Length = 79
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 91 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 150
P YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH
Sbjct: 1 PIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 59
Query: 151 LADPVNNNV 159
L DPVNNN
Sbjct: 60 LTDPVNNNA 68
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 83/160 (51%), Gaps = 28/160 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++ +
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 164 QVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAF 206
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +N L L
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENSLITL 246
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 82/159 (51%), Gaps = 28/159 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 111 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAS 168
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 169 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 211
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 150
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH
Sbjct: 212 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 250
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 81/157 (51%), Gaps = 28/157 (17%)
Query: 11 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 61
E+L K G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 1 ELLVKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEG 58
Query: 62 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 121
R G +G DP YPG F+PLGL D ++ + K+KE+KN
Sbjct: 59 YR----VGGGPLGEGL------------DPLYPGDA-FDPLGLADDPEAKAELKVKEIKN 101
Query: 122 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
GRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 102 GRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY----------TLF 49
ML A G + PE L G WF+TG + GT NY+A P+ +
Sbjct: 106 MLAAAGILIPEGLQANG--ADIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVT 163
Query: 50 VLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGLGKDE 108
++E+ L+G E R G G +G F+ + D YPGGP F+PL L D
Sbjct: 164 LIEIVLLGAVEKFRVD---GTGPAGFSPGVGKFDSDIFDGLDQLYPGGP-FDPLNLADDP 219
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
+ + ++KE KNGRLAM+ +L + +Q VTG GPY N H++DP N+LT L+
Sbjct: 220 EVFAELQVKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYNLLTVLQ 275
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 99 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV 134
++PLGLGKDE+ ++ ++ E+ + R AMLA G +
Sbjct: 79 YDPLGLGKDEEQVEKYRANELLHARWAMLAAAGILI 114
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 88/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F++ VTG GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 31/161 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG--VIPPAGTYNYWADP--------YTLFV 50
MLG G + PE++ E WF TG + AG +Y P + + V
Sbjct: 84 MLGITGCLTPELINSNSTPGFEPV--WFNTGAQIFSDAGI-DYLGVPGFINAHSLFAVIV 140
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG AE+ R K++ DP YPGG F+PLG D +
Sbjct: 141 VQALLMGLAEYARI------------------KFVPEGADPFYPGGKTFDPLGFSSDPEI 182
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151
+ + K+KE+KNGRLAM+A+ G F QG VTGV P QNL D L
Sbjct: 183 LAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDWL 223
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q V G GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVAGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 88/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP ++L HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQGPVESLASHLSDPFGNNLLTVIS 162
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 88/168 (52%), Gaps = 29/168 (17%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV-------- 50
MLGA+G + PEIL K AG+ E+ WF+ G I G +Y +P +
Sbjct: 85 MLGALGCVTPEILSKYAGVSLGESV--WFKAGSQIFQEGGLDYLGNPSLVHAQSILAILG 142
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R N G +G+ D +PG F+PLGL D +
Sbjct: 143 CQVVLMGLIEAYR----VNGGPLGKGL------------DVLHPG-EKFDPLGLADDPDT 185
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP + N
Sbjct: 186 FAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|77799163|gb|ABB03724.1| putative chloroplast chlorophyll A-B binding protein type II
[Sorghum bicolor]
Length = 113
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 68 ANPGSMGRQYFLGF-EKYLGGSG------DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
A + G+ +GF E Y G G D YPGG F+PLGL D + + K+KE+K
Sbjct: 5 AKNSARGQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA-FDPLGLADDPDTAAELKVKELK 63
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
NGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 64 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 101
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 76/166 (45%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W T P G Y P + +E
Sbjct: 98 MLAVPGCLIPEALGLGNWV---EAQQWAAT----PGGQATYLGTPVPWGTLPVIIAIEFV 150
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ F E RR P + R+Y PGG F+PLG KD K ++F
Sbjct: 151 AIAFVESRRI---GVPSAEKRKY----------------PGG-AFDPLGFSKDPKKFEEF 190
Query: 115 KLKEVKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNV 159
KLKEVKNGRLA+LA LG+ Q G GP QNL HLADP +NN+
Sbjct: 191 KLKEVKNGRLALLAFLGFCAQAAAYPGTGPLQNLATHLADPWHNNI 236
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 83 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV 134
++L G PAY PG F+PLGLG+ +++ FK E+ + R AMLA+ G +
Sbjct: 50 EWLPGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLI 106
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 84/176 (47%), Gaps = 35/176 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTG--VIPPAGTYNYWADP--------YTLFV 50
MLGA+G + PE+L Q +AWF G + P G Y P
Sbjct: 122 MLGALGIVVPELLD------QTNHVAWFDAGATIFGPKGI-QYLGVPGLINAKNIIATVA 174
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
+++ LMG E R N G G D YPG F+PLGL D +
Sbjct: 175 VQVILMGAIEGYR----VNGGPAGEGL------------DKVYPG-ESFDPLGLADDPDT 217
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 165
+ K+KE+KNGRLAM + G+FVQ +VTG GP NL DHLA+P VNN + KF
Sbjct: 218 FAELKVKEIKNGRLAMFSNFGFFVQAIVTGKGPIANLNDHLANPTVNNGFAAATKF 273
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG P +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQCPVENLASHLSDPFGNNLLTVIS 162
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ V+E
Sbjct: 96 MLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLGNPVPWGSLPTILVIEFV 148
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ FAEH+R + DP YPGG F+PLG KD
Sbjct: 149 AIAFAEHQRTME----------------------KDPEKKKYPGG-AFDPLGFSKDPAKF 185
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
+++KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 186 EEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTL-----FVLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTGALLLDGNTLNYFGKNIHINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D + GGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHHGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|115776|sp|P14584.1|CB21_RAPSA RecName: Full=Chlorophyll a-b binding of LHCII type 1 protein;
AltName: Full=Chlorophyll a-b binding of LHCII type I
protein; Short=CAB; Short=LHCP
gi|21100|emb|CAA34640.1| chlorophyll a/b binding protein (124 AA) [Raphanus sativus]
Length = 124
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG + D YPGG F+PL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 40 LGEAEDLLYPGGS-FDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 98
Query: 145 QNLLDHLADPVNNN 158
+NL DHLADPVNNN
Sbjct: 99 ENLADHLADPVNNN 112
>gi|169193|gb|AAA33700.1| Major Cab protein [Petunia x hybrida]
Length = 76
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 94 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 153
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 1 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 59
Query: 154 PVNNNV 159
PVNNN
Sbjct: 60 PVNNNA 65
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 15/162 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + E+L K GL + + WF AG +WA TL + L +AE
Sbjct: 47 MLGVAGILVQELLHKTGLGGKAADVYWFD------AGNNTFWAPKETLIAISFLLFAWAE 100
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
R QD+ PGS F KY+ + YPG F+PL K++ + +KLKE+K
Sbjct: 101 CNRAQDYFKPGSNVSDPFGNSIKYV----ELGYPG---FDPLSFTKNDYA--GWKLKEIK 151
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
NGRLAMLA LG+ Q P L DHL++P N+ + +
Sbjct: 152 NGRLAMLAFLGFVAQHNAQPGSPLDQLADHLSNPWKNHFVNN 193
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 99 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV--TGVG 142
F+PL LGKDE ++K + E++NGR AML + G VQ L+ TG+G
Sbjct: 20 FDPLSLGKDEAALKWYTQAELQNGRWAMLGVAGILVQELLHKTGLG 65
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 27/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G + ++ WF+ G I G +Y + +
Sbjct: 94 MLGALGCVTPEILSKYGGVSFGESV-WFKAGSQIFQEGGLDYLGNANLVHAQSILAILGC 152
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G +G DP YPG F+PLGL D +
Sbjct: 153 QVVLMGAIEAYR----VNGGPLGEGL------------DPLYPGDK-FDPLGLADDPDTF 195
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+A+P + N
Sbjct: 196 AELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPIENWAEHVANPFSVNA 243
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 29/168 (17%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV-------- 50
MLGA+G + PEIL K AG+ E+ WF+ G I G +Y +P +
Sbjct: 85 MLGALGCVTPEILSKYAGVSFGESV--WFKAGSQIFQEGGLDYLGNPSLVHAQSILAILG 142
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R N G +G D +PG F+PLGL D +
Sbjct: 143 CQVVLMGLIEAYR----VNGGPLGEGL------------DVLHPG-EKFDPLGLADDPDT 185
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP + N
Sbjct: 186 FAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 29/168 (17%)
Query: 1 MLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV-------- 50
MLGA+G + PEIL K AG+ E+ WF+ G I G +Y +P +
Sbjct: 85 MLGALGCVTPEILSKYAGVSFGESV--WFKAGSQIFQEGGLDYLGNPSLVHAQSILAILG 142
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LMG E R N G +G D +PG F+PLGL D +
Sbjct: 143 CQVVLMGLIEAYR----VNGGPLGEGL------------DVLHPG-EKFDPLGLADDPDT 185
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
+ K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP + N
Sbjct: 186 FAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 78/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMA 54
ML G + PE LG + A W P G Y W T+ V+E
Sbjct: 96 MLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLGAPVPWGTLPTILVIEFV 148
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ FAEH+R + DP YPGG F+PLG KD
Sbjct: 149 AIAFAEHQRTME----------------------KDPEKKKYPGG-AFDPLGFSKDPAKF 185
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
+++KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 186 EEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 234
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 52/75 (69%)
Query: 89 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 148
GD YPGG F+PL D + +KEVKNGRLAMLA+LG+FVQ VT VGP QN+L
Sbjct: 320 GDQNYPGGGPFDPLNYAADADGFVEQAVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVL 379
Query: 149 DHLADPVNNNVLTSL 163
D +ADP +NN+ +L
Sbjct: 380 DFVADPAHNNIFWNL 394
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 118
AE RR W P LG ++L G A G F+PLGL K++ S ++ E
Sbjct: 169 AEARRQSKWYGPSRPRLPGPLGSAEHLIG----AIAGDAGFDPLGLSKEQASFAKYQEAE 224
Query: 119 VKNGRLAMLAILGYFVQGLVT 139
+ + R AML ++G V L+
Sbjct: 225 LLHARWAMLGVVGCLVPELLA 245
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMA 54
ML G + PE LG + A W P G Y W T+ V+E
Sbjct: 96 MLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLGAPVPWGTLPTILVIEFV 148
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ FAEH+R + +P EK YPGG F+PLG KD +++
Sbjct: 149 AIAFAEHQRTME-KDP-----------EKK-------KYPGG-AFDPLGFSKDPAKFEEY 188
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 189 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 234
>gi|117663141|gb|ABK55743.1| chloroplast type III LHCII CAB precursor protein [Cucumis sativus]
Length = 84
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 87 GSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 146
G G+ YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N
Sbjct: 17 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 76
Query: 147 LLDHLADP 154
LLDHL DP
Sbjct: 77 LLDHLDDP 84
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ V+E
Sbjct: 92 MLAVPGVLVPEALGLGNWV---QAQEW----AAEPGGQATYLGNPVPWGTLPTILVIEFV 144
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA---YPGGPLFNPLGLGKDEKSM 111
+ FAEH+R + DP YPGG F+PLG KD
Sbjct: 145 AIAFAEHQRTME----------------------KDPEKKKYPGG-AFDPLGFSKDPVKF 181
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
+++KLKE+KNGRLAMLA +G+ V Q G GP +NL HL+DP +NN+
Sbjct: 182 EEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNI 230
>gi|1262849|gb|AAB19041.1| type 1 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 95
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 87 GSGD-PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 145
G GD P P G F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +
Sbjct: 12 GRGDRPHLPRGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 70
Query: 146 NLLDHLADPVNNNV 159
NL DHLADPVNNN
Sbjct: 71 NLADHLADPVNNNA 84
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMA 54
ML G + PE LG + A W P G Y W T+ V+E
Sbjct: 47 MLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLGAPVPWGTLPTILVIEFV 99
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ FAEH+R + +P +KY GG+ F+PLG KD +++
Sbjct: 100 AIAFAEHQRTME-KDPEK---------KKYPGGA----------FDPLGFSKDPAKFEEY 139
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 140 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 185
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQT-GVIPPAGTYNYWA-----DPYTLFVLEMA 54
MLGA G I PE K G A+ WF+T ++ T NY+ + V E+
Sbjct: 13 MLGAAGCIIPEAFNKYGASCGPEAV-WFKTRALLLDGNTLNYFGKNIPINLVVAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L E D +PGGP F+PLGL KD
Sbjct: 72 LVGGAEYYRIING-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+KNGRLAM ++ +F++ VTG GP +NL HL+DP NN+LT +
Sbjct: 113 KVKEIKNGRLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVIS 162
>gi|413935744|gb|AFW70295.1| hypothetical protein ZEAMMB73_802965 [Zea mays]
Length = 150
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMA 54
ML G + PE LG + A W P G Y W T+ V+E
Sbjct: 1 MLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLGAPVPWGTLPTILVIEFV 53
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ FAEH+R + +P +KY GG+ F+PLG KD +++
Sbjct: 54 AIAFAEHQRTME-KDPEK---------KKYPGGA----------FDPLGFSKDPAKFEEY 93
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 94 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 139
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 28/156 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 117 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 174
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 175 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 217
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 218 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 28/156 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 117 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 174
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 175 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 217
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 218 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 28/156 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 117 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 174
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 175 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 217
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 218 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMA 54
ML G + PE LG + A W P G Y W + T+ +E
Sbjct: 97 MLCVPGVLVPEALGLGNWV---KAQEWAAV----PGGQATYFGVPVPWGNLPTILAIEFL 149
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ FAEH+R + DP YPGG F+PLG KD +
Sbjct: 150 AIAFAEHQRTME----------------------KDPEKKKYPGG-AFDPLGFSKDPVKL 186
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
+++KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 187 EEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 235
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 28/156 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 96 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 153
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 154 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 196
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 197 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 232
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + +A W T P G Y +P + +E
Sbjct: 95 MLAVPGVLIPEALGLGNWV---SAQQWAAT----PGGQATYLGNPVPWGTLPIILAIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ F E +R ++ P R+Y PGGP F+PLG KD K ++++
Sbjct: 148 AVAFVEAKRGEE---PDHEKRKY----------------PGGP-FDPLGFAKDPKKLEEY 187
Query: 115 KLKEVKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNV 159
KLKE+KNGRLA+LA LG+ VQ + G GP +NL HL++P NN+
Sbjct: 188 KLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASHLSNPWANNI 233
>gi|302854499|ref|XP_002958757.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
gi|300255932|gb|EFJ40213.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
Length = 112
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 149
DP YPG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D
Sbjct: 33 DPLYPGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLND 91
Query: 150 HLADPVNNNVL 160
HLA+P NN
Sbjct: 92 HLANPAVNNAF 102
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 23/170 (13%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTL---FVLEMA 54
+L A G + P K G + A+ W++TG + G + Y+ P L + E+
Sbjct: 46 ILRAAGFVPPNAFNKFGSVCGPEAM-WWKTGALLLEGDSIKYFGATVPINLAAAVISEVN 104
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G +E+ R + + LG D +PGG F+PLGL KD
Sbjct: 105 LVGGSEYYRSTN---------------KSPLGSDLDRLHPGGA-FDPLGLAKDPDQFALL 148
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
K+KE+ NGRLAM ++LG+FV+ VTG GP +NL HL+DP NN+LT ++
Sbjct: 149 KVKEIMNGRLAMFSMLGFFVKAYVTGEGPVENLAAHLSDPFGNNLLTVIQ 198
>gi|356510907|ref|XP_003524175.1| PREDICTED: uncharacterized protein LOC100789010 [Glycine max]
Length = 320
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 149
D +PGGP F+PLGL KD K+KE+KNGRLAM A+LG++ Q VTG GP +NL
Sbjct: 238 DKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAK 296
Query: 150 HLADPVNNNVLTSL 163
HL+DP NN+LT +
Sbjct: 297 HLSDPFGNNLLTVI 310
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 86/174 (49%), Gaps = 21/174 (12%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP----------YTLFV 50
MLGA+GA PEIL +G+ A W G NY + +
Sbjct: 125 MLGALGAGIPEILQYSGVSDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAI 184
Query: 51 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 110
++ LM E+ R + G + YL GD YPGG LF+PLGL KD S
Sbjct: 185 CQVLLMFGPEYAR--------ACGIEALEPLGLYL--PGDKNYPGG-LFDPLGLSKDPAS 233
Query: 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
D ++KE+KNGRLA++A +G+ Q VT GP +LLD ADPV+NN+ L+
Sbjct: 234 FADLQVKEIKNGRLALVAWVGFAAQAAVTRKGPIADLLDFAADPVHNNIFAYLR 287
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMA 54
ML G + PE LG + A W P G Y W + T+ +E
Sbjct: 65 MLCVPGVLVPEALGLGNWV---KAQEWAAV----PGGQATYFGVPVPWGNLPTILAIEFV 117
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ FAEH+R + +P +KY GG+ F+PLG KD +++
Sbjct: 118 AIAFAEHQRTME-KDPEK---------KKYPGGA----------FDPLGFSKDPVKFEEY 157
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 158 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 203
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 81/169 (47%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y P T+ V+E
Sbjct: 97 MLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLGQPVPWGTLPTILVIEFL 149
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD + +
Sbjct: 150 AIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPEKL 186
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
K++K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 187 KEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 235
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 72 SMGRQYFLGFEK--YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 129
SM ++ G + YL GS PG F+PLGLG+ ++++ FK E+ + R AMLA+
Sbjct: 45 SMSAEWMPGQPRPPYLDGSA----PGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAV 100
Query: 130 LGYFV 134
G V
Sbjct: 101 PGILV 105
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ V+E
Sbjct: 92 MLAVPGVLVPEALGLGNWV---QAQEW----AAEPGGQATYLGNPVPWGTLPTILVIEFV 144
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA---YPGGPLFNPLGLGKDEKSM 111
+ FAEH+R + DP YPGG F+PLG KD
Sbjct: 145 AIAFAEHQRTME----------------------KDPEKKKYPGG-AFDPLGFSKDPVKF 181
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
+++KLKE+KNGRLAMLA + + V Q G GP +NL HL+DP +NN+
Sbjct: 182 EEYKLKEIKNGRLAMLAFVAFCVQQSAYPGTGPLENLASHLSDPWHNNI 230
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 149
D +PGGP F+PLGL D K+KE+KNGRLAM ++LG+F+Q VTG GP +NL
Sbjct: 143 DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSK 201
Query: 150 HLADPVNNNVLTSLK 164
HL+DP NN+LT +
Sbjct: 202 HLSDPFGNNLLTVIS 216
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMA 54
ML G + PE LG + A W P G Y W T+ +E
Sbjct: 100 MLAVPGVLVPEALGLGNWV---KAQEWAAV----PGGQATYLGAPVPWGTLPTILAVEFV 152
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ FAEH+R + +P +KY GG+ F+PLG +D ++++
Sbjct: 153 AIAFAEHQRTME-KDPEK---------KKYPGGA----------FDPLGFSRDPAKLEEY 192
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 193 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNI 238
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 86/164 (52%), Gaps = 39/164 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY---TLFVLEMALMG 57
MLG G +APE++G+ + +A W TG P TY PY T+ +E +
Sbjct: 89 MLGVAGMLAPELVGQGTWL---SAQDWAVTGGKP---TYLGNELPYGFGTVLAVEFFCLS 142
Query: 58 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDF 114
+ E R G EK DP YPGG F+PLG GKDE +
Sbjct: 143 WVEISR----------------GLEK------DPMKRIYPGGA-FDPLGFGKDEVN---- 175
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
K+KE++NGRLAM+A +G + QG+ G GP NL+DHLADP++NN
Sbjct: 176 KVKELRNGRLAMVAFVGMWCQGIHVGGGPVSNLMDHLADPLHNN 219
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
D + PG ++PLGL KD S+ ++ EV NGR AML + G LV
Sbjct: 53 DGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGMLAPELV 101
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 81/169 (47%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 91 MLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLGNPVPWGTLPTILAIEFL 143
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SMG+ DP YPGG F+PLG KD K+
Sbjct: 144 AISFVEHQR--------SMGK--------------DPEKKKYPGG-AFDPLGYSKDPKTF 180
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 181 HEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNI 229
>gi|302854495|ref|XP_002958755.1| hypothetical protein VOLCADRAFT_69853 [Volvox carteri f.
nagariensis]
gi|300255930|gb|EFJ40211.1| hypothetical protein VOLCADRAFT_69853 [Volvox carteri f.
nagariensis]
Length = 88
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 149
DP YPG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D
Sbjct: 9 DPLYPGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLND 67
Query: 150 HLADPVNNNVL 160
HLA+P NN
Sbjct: 68 HLANPAVNNAF 78
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 15/153 (9%)
Query: 12 ILGKAGLIPQETA---LAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWA 68
+LG AG++ QE + W+ + V D L E+ +M + E RR D
Sbjct: 88 MLGVAGILVQELVRPDVFWYTSAV-----DVELPFDITGLVAFELFVMHWVESRRGYDIK 142
Query: 69 NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 128
NPGSM + F + S +P YPGG +F P G SM++ K+KE+KNGRLAMLA
Sbjct: 143 NPGSMDQDPI--FSNFKLPSHEPGYPGG-IFAPFVPG----SMEELKVKEIKNGRLAMLA 195
Query: 129 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+G+ + ++G+ P L +HL+DP+N + +
Sbjct: 196 FIGFTMAAQISGLNPLAALGEHLSDPLNTTIFS 228
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 81/166 (48%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMA 54
ML G + PE LG + A W P G Y W + T+ +E
Sbjct: 66 MLCVPGVLVPEALGLGNWV---KAQEWAAV----PGGQATYFGVPVPWGNLPTILAIEFL 118
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ FAEH+R + +P +KY GG+ F+PLG KD ++++
Sbjct: 119 AIAFAEHQRTME-KDPEK---------KKYPGGA----------FDPLGFSKDPVKLEEY 158
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
KLKE++NGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 159 KLKEIRNGRLAMLAFVGFCVQQSPYPGTGPLENLASHLADPWHNNI 204
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 28/156 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 29 MLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 86
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R G +G D YPGG F+PLGL D ++
Sbjct: 87 QVVLMGLIEGYR----VGGGPLGEGL------------DKVYPGGS-FDPLGLADDPEAF 129
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 130 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 165
>gi|302854487|ref|XP_002958751.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|302854497|ref|XP_002958756.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
gi|300255926|gb|EFJ40207.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|300255931|gb|EFJ40212.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
Length = 98
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 149
DP YPG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D
Sbjct: 19 DPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLND 77
Query: 150 HLADPVNNNVLT 161
HLA+P NN
Sbjct: 78 HLANPAVNNAFA 89
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 51/168 (30%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 162
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R D D ++
Sbjct: 163 QVVLMGAVEGYRIAD----------------------------------------DPEAF 182
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 183 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNNA 230
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 80/165 (48%), Gaps = 39/165 (23%)
Query: 1 MLGAVGAIAPEILGK---AGLIPQETALAWFQTG--VIPPAGTYNYWADP--------YT 47
MLG G + PE++ G P WF+TG + AG +Y P
Sbjct: 72 MLGITGCLVPELINSNPTPGFEP-----VWFKTGAQIFSEAGI-DYLGVPGFINAHSLVA 125
Query: 48 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA-YPGGPLFNPLGLGK 106
+ V++ LMG AE+ R + L G+ A YPGG F+PLG
Sbjct: 126 VIVVQALLMGVAEYARIK-------------------LSPEGNDAFYPGGKAFDPLGFSS 166
Query: 107 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151
D +S + K+KE+KNGRLAM+A+ G F QG VTGV P QNL D L
Sbjct: 167 DPESFAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDFL 211
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G I PE LG + A W P G Y P T+ +E
Sbjct: 96 MLAVPGIIVPEALGLGNWV---KAQEWAAI----PGGQATYLGQPVPWGTLPTILAIEFL 148
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ F EH+R SM + S YPGG F+PLG KD ++
Sbjct: 149 AIAFVEHQR--------SMEKD-----------SEKKKYPGG-AFDPLGYSKDPAKFEEL 188
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
K+KE+KNGRLA+LAI+G+ V Q G GP +NL HLADP +NN+
Sbjct: 189 KVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234
>gi|307106621|gb|EFN54866.1| hypothetical protein CHLNCDRAFT_134943 [Chlorella variabilis]
Length = 268
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 53 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGS-----GDPAYPGGPLFNPLGL--G 105
+ L GFAE +R D NPGS G K +GG G P Y GG F+P+GL G
Sbjct: 145 IVLSGFAEFKRLNDIRNPGSQGSGILPEDFKGVGGPQGRTVGGP-YVGGRFFDPMGLCRG 203
Query: 106 KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
E+++K +K E++NGRLAM+ LG+ Q TG GP NL+DH++DP + N +++
Sbjct: 204 SPEQTLK-YKWNEIRNGRLAMIGFLGFAAQYCATGKGPIDNLIDHVSDPTHVNFISN 259
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 36/167 (21%)
Query: 1 MLGAVGAIAPEILGKAGLIP-QETALAWFQTGVIPPAGTYNYWADPY------TLFVLEM 53
ML G + PE LG + QE A A P G Y P T+ +E
Sbjct: 95 MLAVPGILIPEALGLGNWVKAQEWAAA--------PGGQATYLGQPVPWGTLPTVLAIEF 146
Query: 54 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 113
+ F EH+R SM + EK YPGG F+PLG KD K ++
Sbjct: 147 VAIAFVEHQR--------SMEKDP----EKK-------KYPGG-AFDPLGFSKDPKKFEE 186
Query: 114 FKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
+K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 187 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + + A P G Y +P T+ V+E
Sbjct: 96 MLAVPGILVPEALGLGNWVKAQEWAAL-------PGGQATYLGNPVPWGTLPTILVIEFL 148
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K
Sbjct: 149 SIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKF 185
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNV 159
++K+KEVKNGRLA+LA +G VQ G GP +NL HLADP +NN+
Sbjct: 186 HEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLENLATHLADPWHNNI 234
>gi|115769|sp|P12327.1|CB21_EUGGR RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|829262|emb|CAA29821.1| chlorophyll a/b protein (128 AA) [Euglena gracilis]
Length = 127
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 65/116 (56%), Gaps = 14/116 (12%)
Query: 48 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 107
+ ++ LMG E R + A PG G D YPGGP F+PLGL D
Sbjct: 14 ILATQVLLMGAVEGYRAGNTA-PGQFGEDL------------DRLYPGGP-FDPLGLADD 59
Query: 108 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ + K+KE+KNGRLAM +LG++ Q +VTG GP +N L HL DP +N LT+L
Sbjct: 60 PDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAL 115
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 81/156 (51%), Gaps = 28/156 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G I PE+LG G +P A+ WF+ G I G +Y +P +
Sbjct: 98 MLGALGCIFPELLGSYG-VPFGEAV-WFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGT 155
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R N G +G D YPGG F+PLGL D +
Sbjct: 156 QVLLMGAIEGYR----VNGGPLGEGL------------DKLYPGGS-FDPLGLADDPDTF 198
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL
Sbjct: 199 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 97 MLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLGNPVPWGTLPTILAIEFL 149
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R EK DP YPGG F+PLG KD K+
Sbjct: 150 AISFVEHQR----------------SMEK------DPEKKKYPGG-AFDPLGYSKDPKTF 186
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 187 HEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNI 235
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 84/157 (53%), Gaps = 26/157 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE L K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD +
Sbjct: 72 LLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151
K+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL
Sbjct: 113 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|145079374|tpg|DAA05912.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Acetabularia acetabulum]
Length = 229
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 23/115 (20%)
Query: 48 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 107
L +E+ALM E++RF+ W G G FL F +P F+PL + D
Sbjct: 124 LVAIEIALMAVLEYQRFKGWKETGKSG---FLAF-----------FP----FDPLNMASD 165
Query: 108 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 162
E + KE+KNGRLAM+A LG+ Q V G+GP + L H+ADP NNN+ TS
Sbjct: 166 EMA-----FKEIKNGRLAMIAFLGFCSQAAVRGMGPIECLKMHIADPWNNNIFTS 215
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 51
MLGA G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 105 MLGAFGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 163
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R + G G+ YPGG F+ L L D+ +
Sbjct: 164 QVILMGLVEGFRINRFDGVGE----------------GNDLYPGGKYFDLLSLVDDQVTF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 157
+ K+KE+KNG LAM ++ G+FVQ +VTG P ++LLDHL + V N
Sbjct: 208 VELKVKEIKNGMLAMFSMFGFFVQAIVTGKDPLESLLDHLDNFVAN 253
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 37/164 (22%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+ G + EI AG+ P+ W++ AGT +Y P L +++ +MG+ E
Sbjct: 50 MMAVAGIVGTEI---AGIEPR-----WWE------AGTEDYGFPPQALLAVQLPVMGYLE 95
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEV 119
++R Q W GS G + +P F+P+G+G KDEK KLKE+
Sbjct: 96 NKRIQGWLATGSSGV--------------NETFP----FDPMGMGSKDEK----MKLKEI 133
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGR AM+A +G VQG+V GP L DH+A+P N+ T++
Sbjct: 134 KNGRAAMIAFVGIVVQGIVYREGPVAALKDHVANPFGCNMATNI 177
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 99 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 143
F+PLGLG D +K ++ E+ N R AM+A+ G V + G+ P
Sbjct: 23 FDPLGLGSDPTRLKYYQEAELMNARWAMMAVAG-IVGTEIAGIEP 66
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 80/169 (47%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 95 MLAVPGILVPEALGYGNWV---KAQEWAAV----PGGQATYLGNPVPWGTLPTILAIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA---YPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K +
Sbjct: 148 AIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKL 184
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 185 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 69 NPGSMGRQYFLGFEKYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 123
N G++GR ++ G PAY PG F+PLGLG+ ++++ +K E+ + R
Sbjct: 35 NAGNVGRIRMAA--HWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCR 92
Query: 124 LAMLAILGYFV 134
AMLA+ G V
Sbjct: 93 WAMLAVPGILV 103
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 83/157 (52%), Gaps = 26/157 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE L K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGFIIPEALNKYGAKCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD
Sbjct: 72 LLGGAEYYRITNE-----------LDFE-------DKLHPGGP-FDPLGLAKDPDQGALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151
K+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL
Sbjct: 113 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 76/166 (45%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G I PE LG + A W P G Y P T+ +E
Sbjct: 96 MLAVPGIIVPEALGLGNWV---KAQEWAAI----PGGQATYLGQPVPWGTLPTILAIEFL 148
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ F EH+R SM + S YPGG F+PLG KD ++
Sbjct: 149 AIAFVEHQR--------SMEKD-----------SEKKKYPGG-AFDPLGYSKDPAKFEEL 188
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
>gi|222424528|dbj|BAH20219.1| AT3G54890 [Arabidopsis thaliana]
Length = 159
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 80/169 (47%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 13 MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 65
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K +
Sbjct: 66 AIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKL 102
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 103 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 151
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 95 MLAVPGILVPEALGLGNWV---KAQEWAAL----PGGQATYLGNPVPRGTLPTVLAIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K
Sbjct: 148 AISFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKF 184
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 185 HEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 95 MLAVPGILVPEALGLGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTVLAIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K
Sbjct: 148 AISFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKF 184
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 185 HEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 80/169 (47%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 95 MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K +
Sbjct: 148 AIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKL 184
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 185 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 69 NPGSMGRQYFLGFEKYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 123
N G++GR ++ G PAY PG F+PLGLG+ +++ +K E+ + R
Sbjct: 35 NAGNVGRIKMAA--HWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCR 92
Query: 124 LAMLAILGYFV 134
AMLA+ G V
Sbjct: 93 WAMLAVPGILV 103
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 80/169 (47%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 95 MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K +
Sbjct: 148 AIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKL 184
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 185 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 69 NPGSMGRQYFLGFEKYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 123
N G++GR ++ G PAY PG F+PLGLG+ +++ +K E+ + R
Sbjct: 35 NAGNVGRIRMAA--HWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCR 92
Query: 124 LAMLAILGYFV 134
AMLA+ G V
Sbjct: 93 WAMLAVPGILV 103
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 80/169 (47%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 47 MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 99
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA---YPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K +
Sbjct: 100 AIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKL 136
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 137 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 185
>gi|18539449|gb|AAL74395.1|AF359127_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
gi|18539451|gb|AAL74396.1|AF359128_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
Length = 122
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L GLI W+ AG Y+A TLFV+E L + E
Sbjct: 2 MLGVAGMLIPEVLTSIGLI---NVPKWYD------AGKVEYFASSSTLFVIEFILFHYVE 52
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + F++Y + YPGG +FNPL ++ K KE+
Sbjct: 53 LRRWQDIKYPGSVNQDPL--FKQYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELA 105
Query: 121 NGRLAMLAILGYFVQ 135
NGRLAMLA LG+ VQ
Sbjct: 106 NGRLAMLAFLGFVVQ 120
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 29/172 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
M A+G I PE+L G E WF+ G I G +Y +P ++
Sbjct: 110 MSAALGCIFPELLSVMGQGFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTT 167
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R LG DP YPG F+ LGL +D ++
Sbjct: 168 KVILMGAVEGYRIA----------------RGPLGEVTDPLYPGS--FDSLGLAEDTEAF 209
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
+ K+KE+KNGRLAM ++ G+FVQ +V+ +NL DHL VNNN L+++
Sbjct: 210 AELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNV 261
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 77/153 (50%), Gaps = 10/153 (6%)
Query: 12 ILGKAGLIPQETA---LAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWA 68
+L AG+ QE + W++ + P N A L E+ M F E RR D+
Sbjct: 89 MLAVAGIAVQEVVRPDVFWYEAALKSPMPFGNSPAAILGLVAFELFAMHFVEVRRAYDFK 148
Query: 69 NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 128
NPGS + K + YPGG +F P+ G + + KLKE+KNGRLAMLA
Sbjct: 149 NPGSQDQDPIFSNNKL--PKHEVGYPGG-IFAPVIPG----DLAELKLKEIKNGRLAMLA 201
Query: 129 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
G+ +Q VTG GP +L DHL++P+ + +
Sbjct: 202 FAGFVMQAQVTGKGPLASLGDHLSNPIGTTIFS 234
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 75 RQYFLGFEK--YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAML 127
RQ + E+ +L G PA+ G L F+PLGLG D + + F E + R AML
Sbjct: 31 RQTVVRAERALWLPGGDAPAHLDGSLPGDFGFDPLGLGADPERLAWFAESERVHARWAML 90
Query: 128 AILGYFVQGLV 138
A+ G VQ +V
Sbjct: 91 AVAGIAVQEVV 101
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 22/160 (13%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE LG + Q A G G W + T+ +E + F E
Sbjct: 52 MLAVPGVLVPEALGLGNWV-QAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVE 110
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
H+R SM + + YPGG F+PLG KD +++K+KE+K
Sbjct: 111 HQR--------SMEKD-----------TEKKKYPGG-AFDPLGYSKDPVKFEEYKVKEIK 150
Query: 121 NGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
NGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 151 NGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 190
>gi|388506626|gb|AFK41379.1| unknown [Lotus japonicus]
Length = 147
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 79/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 1 MLAVPGILVPEALGLGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTVLAIEFL 53
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K
Sbjct: 54 AISFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKF 90
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 91 HEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 139
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 26/164 (15%)
Query: 12 ILGKAGLIPQETALAWFQTGVIPP------AGTYNYWADPYT------LFVLEMALMGFA 59
+LG AG++ QE V+ P AG +P+T L E LM +
Sbjct: 82 MLGVAGVLVQE---------VVKPDVYFYEAGLPQNLPEPFTNVNMGGLLAWEFILMHWV 132
Query: 60 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
E RR+QD+ N GS+ K + + YPGG +F+PLG K ++K+ + KE+
Sbjct: 133 EVRRWQDYKNFGSVNEDPIFKGNKV--PNPEMGYPGG-IFDPLGFSKG--NLKELQTKEI 187
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAM+A +G+ +Q TG GP L HL++P NN+L ++
Sbjct: 188 KNGRLAMVAYMGFVLQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 83/157 (52%), Gaps = 26/157 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE L K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD +
Sbjct: 72 LLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151
K+KE+KNGRLAM +LG+F+Q VTG GP +NL HL
Sbjct: 113 KVKEIKNGRLAMFGMLGFFIQAYVTGEGPVENLAKHL 149
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 22/160 (13%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE LG + Q A G G W + T+ +E + F E
Sbjct: 95 MLAVPGVLVPEALGLGNWV-QAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
H+R SM + + YPGG F+PLG KD +++K+KE+K
Sbjct: 154 HQR--------SMEKD-----------TEKKKYPGG-AFDPLGYSKDPVKFEEYKVKEIK 193
Query: 121 NGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
NGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 194 NGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 233
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 78/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y P T+ +E
Sbjct: 96 MLAVPGILVPEALGLGNWV---KAQEWAAI----PGGQATYLGQPVPWGTLPTILAIEFL 148
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K
Sbjct: 149 AIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKF 185
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 186 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
>gi|37927438|gb|AAP69815.1| chlorophyll a/b-binding protein, partial [Vitis vinifera]
Length = 96
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 7/101 (6%)
Query: 64 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 123
+QD NPGS+ + F+ Y + YPGG +FNPL E++ K KE+ NGR
Sbjct: 1 WQDIKNPGSVNQDPI--FKNYSLPPNEVGYPGG-IFNPLNFAPTEEA----KEKELANGR 53
Query: 124 LAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
LAMLA LG+ VQ VTG GP+ NLL H++DP +N ++ +L+
Sbjct: 54 LAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTLR 94
>gi|118486699|gb|ABK95186.1| unknown [Populus trichocarpa]
Length = 142
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P TL ++E+ +
Sbjct: 1 MLATLGALSVEWL---------TGVTWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLV 51
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 52 IGYIEFQRNAE------------LDPEKRL-------YPGGNFFDPLGLAADPEKKATLQ 92
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ VTG GP N HL+DP++ ++ +L
Sbjct: 93 LAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPLHTTIIDTLS 141
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W T P G Y P + +E
Sbjct: 94 MLAVPGILVPEALGLGNWV---KAQEWAAT----PGGQATYLGQPVPWGTLPIILAIEFV 146
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ F EH+R SM + + YPGG F+PLG KD + +++
Sbjct: 147 AIAFVEHQR--------SMEKD-----------TEKKKYPGG-AFDPLGYSKDPQKFEEY 186
Query: 115 KLKEVKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNV 159
K+KE+KNGRLA+LA +G VQ G GP +NL HLADP +NN+
Sbjct: 187 KVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNI 232
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 83/157 (52%), Gaps = 26/157 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMA 54
MLGA G I PE L K G A+ WF+TG + G T NY+ + V E+
Sbjct: 13 MLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 71
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + L FE D +PGGP F+PLGL KD +
Sbjct: 72 LLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALL 112
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151
K+KE+KNGRLAM +LG+F+Q VTG GP +NL HL
Sbjct: 113 KVKEIKNGRLAMFXMLGFFIQAYVTGEGPVENLAKHL 149
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P TL ++E+ +
Sbjct: 142 MLATLGALSVEWL---------TGVTWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLV 192
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 193 IGYIEFQRNAE------------LDPEKRL-------YPGGNFFDPLGLAADPEKKATLQ 233
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ VTG GP N HL+DP++ ++ +L
Sbjct: 234 LAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPLHTTIIDTLS 282
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P TL ++E+ +
Sbjct: 142 MLATLGALSVEWL---------TGVTWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLV 192
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 193 IGYIEFQRNAE------------LDPEKRL-------YPGGNFFDPLGLAADPEKKATLQ 233
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ VTG GP N HL+DP++ ++ +L
Sbjct: 234 LAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPLHTTIIDTLS 282
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 48 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 107
+ E LM F E RR+QD S+ F K + + YPGGP F+PLG K
Sbjct: 126 ILAWEFLLMHFVEVRRWQDIRKKDSVNADPFNPNLKV--PNPEMGYPGGP-FDPLGFSKG 182
Query: 108 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+ + KE+KNGRLAM+A + + +Q TG GP NL DHLA P +NNV
Sbjct: 183 --NFKEVQTKEIKNGRLAMVAFVAFTIQAQATGKGPLANLTDHLASPFSNNV 232
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 78/169 (46%), Gaps = 34/169 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 120 MLCVPGVLVPEALGLGNWV---KAQEWAAL----PDGQATYLGNPVPWGNLPTILAIEFL 172
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ FAE +R + +P EK YPGG F+PLG KD ++
Sbjct: 173 AIAFAEQQRTME-KDP-----------EKK-------KYPGG-AFDPLGFSKDPAKFEEL 212
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNVLTS 162
KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +N TS
Sbjct: 213 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNTSATS 261
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 22/160 (13%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE LG + + A G G W + T+ +E + FAE
Sbjct: 71 MLCVPGVLVPEALGLGNWV-KAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAE 129
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
+R + +P +KY GG+ F+PLG KD ++ KLKE+K
Sbjct: 130 QQRTME-KDPEK---------KKYPGGA----------FDPLGFSKDPAKFEELKLKEIK 169
Query: 121 NGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
NGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 170 NGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 209
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 76/169 (44%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 95 MLCVPGVLVPEALGLGNWV---KAQEWAAL----PDGQATYLGNPVPWGNLPTILAIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ FAE +R + DP YPGG F+PLG KD
Sbjct: 148 AIAFAEQQRTME----------------------KDPEKKKYPGG-AFDPLGFSKDPAKF 184
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++ KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 185 EELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|315140122|gb|ADT81035.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140124|gb|ADT81036.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140126|gb|ADT81037.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140128|gb|ADT81038.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140130|gb|ADT81039.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140132|gb|ADT81040.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140134|gb|ADT81041.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140136|gb|ADT81042.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
Length = 128
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+L G++ W+ AG Y+A TLFV+E L + E
Sbjct: 8 MLGVAGMLIPEVLTSIGIL---NVPKWYD------AGKVEYFASSSTLFVIEFILFHYVE 58
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
RR+QD PGS+ + F+ Y D YPGG +FNPL ++ K KE+
Sbjct: 59 LRRWQDIKYPGSVNQDPI--FKSYSLPPNDVGYPGG-IFNPLNFSPSLEA----KEKELA 111
Query: 121 NGRLAMLAILGYFVQ 135
NGRLAMLA LG+ VQ
Sbjct: 112 NGRLAMLAFLGFVVQ 126
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 28/152 (18%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 80 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAV 137
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 138 QVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 180
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 143
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 181 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 212
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 45 PYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGL 104
P L E M + E RR+QD PGS+ + F +Y +P YPGG +F P
Sbjct: 109 PLGLLAFEFFCMHWVELRRWQDLRKPGSVDQDPI--FSQYKLPPHEPGYPGG-VFAPFIP 165
Query: 105 GKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
G + + K+KE+KNGRLAMLA +G+ + VTG GP L +HLADP + +
Sbjct: 166 G----DLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPWGTTIFS 218
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L GS PA+ G L F+PLGLG + S+K F+ E+ + R AM A+ G VQ +V
Sbjct: 31 WLPGSTPPAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVHSRWAMAAVAGILVQEIV 90
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y P T+ V+E
Sbjct: 95 MLAVPGILVPEALGLGNWV---KAQEWAAI----PGGQATYLGQPVPWGTLPTILVIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ F EH+R SM + EK YPGG F+PLG KD ++
Sbjct: 148 AIAFVEHQR--------SMEKDP----EKK-------KYPGG-AFDPLGYSKDPAKFHEY 187
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
K+KE+KNGRLA+LA +G V Q G GP +NL HLADP +NN+
Sbjct: 188 KVKEIKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 45 PYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGL 104
P L +E LM + E RR+QD PGS+ + F +Y + + YPGG +F P
Sbjct: 110 PLGLLAVEFFLMHWVELRRWQDLRKPGSVDQDPI--FSQYKLPAHEVGYPGG-VFAPFIP 166
Query: 105 GKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
G + + K+KE+KNGRLAMLA +G+ + VTG GP L +HLADP + +
Sbjct: 167 G----DLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPFGTTIFS 219
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L GS PA+ G L F+PLGLG + +S+K FK E+ + R AM A+ G VQ +V
Sbjct: 32 WLPGSTPPAHLKGELPGDFGFDPLGLGANAESLKWFKESELVHCRWAMAAVAGILVQEIV 91
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 78/168 (46%), Gaps = 40/168 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ V+E
Sbjct: 32 MLAVPGILVPEALGFGNWV---KAQEWAAV----PGGQATYLGNPVPWGTLPTILVIEFL 84
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA---YPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K
Sbjct: 85 AIAFVEHQR--------SMEK--------------DPEKRKYPGG-AFDPLGYSKDPKKF 121
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNN 158
++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +N
Sbjct: 122 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNK 169
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 80/152 (52%), Gaps = 26/152 (17%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMA 54
MLGA G I PE K G A+ WF+TG + G T NY+ P L V E+
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVI 190
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
L+G AE+ R + LGF+ D +PGGP F+PLGL KD
Sbjct: 191 LVGGAEYFRITNG-----------LGFD-------DKLHPGGP-FDPLGLAKDPDQAALL 231
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 146
K+KE+KNGRLAM A+LG+F+Q VTG P++
Sbjct: 232 KVKEIKNGRLAMFAMLGFFLQAYVTGDVPWRT 263
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 33/168 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P TL +E+ L
Sbjct: 145 MLATLGALSVEWL---------TGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLL 195
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 196 IGYIEFQRNAE------------LDPEKRL-------YPGGKFFDPLGLAADPEKKATLQ 236
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
L E+K+ RLAM+ LG+ VQ VTG GP N HL+DP++ ++ +L
Sbjct: 237 LAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTL 284
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P TL +E+ +
Sbjct: 145 MLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLV 195
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 196 IGYIEFQRNAE------------LDSEKRL-------YPGGKFFDPLGLASDPEKTAQLQ 236
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ TG GP N HL+DP++ ++ +
Sbjct: 237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE L G + ET F G +W +++ LMG AE
Sbjct: 152 MLAVPGVVIPEALNIPGGVWTETGKV-FLDGETGRDSILEFWP---IYAAIQVVLMGGAE 207
Query: 61 HRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 119
R QD P G F G FE+ DP PGGPL + + K+ + ++ K+KE+
Sbjct: 208 KFR-QDGVGPA--GFVPFKGKFEESAFNGLDPVNPGGPL-DFFDVAKNPQDLQILKVKEI 263
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
KNGRLAM+A+LG FVQG VTG GP N H+A+P N +T
Sbjct: 264 KNGRLAMIAMLGVFVQGAVTGEGPAANWGKHVANPFGYNFVT 305
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 99 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV 134
F+PLGLG D K +KD+++ E+ + R AMLA+ G +
Sbjct: 126 FDPLGLGADGK-VKDYRVAEILHARWAMLAVPGVVI 160
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 78/166 (46%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMA 54
ML G + PE LG + A W P G Y W + T+ +E
Sbjct: 97 MLCVPGVLVPEALGLGNWV---KAQEWAAL----PDGQATYFGVPVPWGNLPTILAIEFL 149
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 114
+ FAE +R + +P EK YPGG F+PLG KD ++
Sbjct: 150 AIAFAEQQRTME-KDP-----------EKK-------KYPGG-AFDPLGFSKDPAKFEEL 189
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 190 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAHLADPWHNNI 235
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE LG G + ET + G + +P +++ALM E
Sbjct: 161 MLAIPGVVIPEALGLPGGVWTETGKVFLDGET----GRPFFLENPIVFAAVQVALMAGVE 216
Query: 61 HRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPL--FNPLGLGKDEKSMKDFKLK 117
R + G G F G F++ DP PGGPL FN + + + + K+K
Sbjct: 217 QFRS---SGEGPAGFVPFKGKFDESAFKGLDPINPGGPLDFFN---VASNPQDLALLKVK 270
Query: 118 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
E+KNGRLAM+A+LG FVQGL TG GP N H+ADP N +T
Sbjct: 271 EIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVT 314
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 33/165 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA+ E L T + W G + +Y P TL +E+ +
Sbjct: 144 MLATLGALTVEWL---------TGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLV 194
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL +D + +
Sbjct: 195 IGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAEDPEKKATLQ 235
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
L E+K+ RLAM+A LG+ VQ VTG GP N HL+DP++ ++
Sbjct: 236 LAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 280
>gi|323388125|gb|ADX60322.1| chlorophyll a-b binding protein of LHCII [Furcellaria lumbricalis]
Length = 86
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 149
DP YPG F+PLGL D + + K KE+KNGRLA ++ GYFVQ L TG GP QN +
Sbjct: 4 DPLYPG-EAFDPLGLADDPDTFAELKTKEIKNGRLAQFSMFGYFVQALQTGKGPVQNWSE 62
Query: 150 HLADPVNNN 158
H+ADP N N
Sbjct: 63 HVADPWNVN 71
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P TL +E+ +
Sbjct: 148 MLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLV 198
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 199 IGYIEFQRNAE------------LDSEKRL-------YPGGKFFDPLGLAADPEKTAQLQ 239
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ TG GP N HL+DP++ ++ +
Sbjct: 240 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P TL +E+ +
Sbjct: 148 MLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLV 198
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 199 IGYIEFQRNAE------------LDSEKRL-------YPGGKFFDPLGLAADPEKTAQLQ 239
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ TG GP N HL+DP++ ++ +
Sbjct: 240 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288
>gi|307106431|gb|EFN54677.1| hypothetical protein CHLNCDRAFT_24450 [Chlorella variabilis]
Length = 189
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 80/165 (48%), Gaps = 40/165 (24%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M G + ++LGK P+ WF+ AG YW D L +E ++GF E
Sbjct: 54 MAAVAGILFTDVLGK----PK-----WFE------AGAQEYWMDNNALLAIEFLVLGFLE 98
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
+RFQ W G+ G FL A+P F+P G+ + SM KEVK
Sbjct: 99 LKRFQGWKETGTSG---FLN-----------AFP----FDPAGM--NSPSMAT---KEVK 135
Query: 121 NGRLAMLAILGYFVQ--GLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAM+A +G+ VQ LVT GP + L HL+ P NN + S+
Sbjct: 136 NGRLAMVAFIGFCVQASALVTREGPVEALQSHLSSPFENNFIGSI 180
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 40/169 (23%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 95 MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSM 111
+ F EH+R SM + DP YPGG F+PLG KD K
Sbjct: 148 AIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKF 184
Query: 112 KDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP + N+
Sbjct: 185 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNI 233
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 69 NPGSMGRQYFLGFEKYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 123
N G++GR ++ G PAY PG F+PLGLG+ ++++ +K E+ + R
Sbjct: 35 NAGNVGRIRMAA--HWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCR 92
Query: 124 LAMLAILGYFV 134
AMLA+ G V
Sbjct: 93 WAMLAVPGILV 103
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 28/154 (18%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAC 164
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 111
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 QVVLMGAVEGYRIA--GGP--------------LGEIVDPLYPGGS-FDPLGLADDPEAF 207
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 145
+ K+KE+KNGRLAM ++ G+FVQ +VTG P +
Sbjct: 208 AELKVKEIKNGRLAMFSMFGFFVQAIVTGGEPCR 241
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 85 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 59 LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 117
Query: 145 QNLLDHL 151
+NL DH
Sbjct: 118 ENLYDHF 124
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
ML G + PE LG G + ET + AG +PY +++ L E
Sbjct: 144 MLAIPGIVIPEALGIPGGVWTETGKVFLDG----EAGRPEILQNPYLFAAIQIGLFAAVE 199
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSG----DPAYPGGPL--FNPLGLGKDEKSMKDF 114
R P F+ F+ GS DP PGGPL FN + +
Sbjct: 200 GYRAGKAPAPDG-----FVPFKGKFSGSDFSGLDPINPGGPLDFFN---VAATPDDLAVL 251
Query: 115 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
K+KE+KNGRLAM+A+LG FVQGL TG GP N H+ADP N +T
Sbjct: 252 KVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVT 298
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 45 PYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGL 104
P L +E LM + E RR+QD PGS+ + F +Y + YPGG +F P
Sbjct: 110 PLGLLAVEFFLMHWVEVRRWQDLRKPGSVDQDPI--FSQYKLPPHEVGYPGG-VFAPFIP 166
Query: 105 GKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
G + + K+KE+KNGRLAMLA +G+ + VTG GP L +HLADP + +
Sbjct: 167 G----DLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPWGTTIFS 219
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 84 YLGGSGDPAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
+L GS PA+ G L F+PLGLG + +S+K FK E+ + R AM A+ G VQ +V
Sbjct: 32 WLPGSTPPAHLKGDLPGDFGFDPLGLGANAESLKWFKESELVHSRWAMAAVAGILVQEIV 91
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 35/163 (21%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
M+ G + E+ AG+ P+ W++ AGT +Y P L ++ +MG+ E
Sbjct: 77 MMAVAGIVGTEV---AGIEPR-----WWE------AGTEDYGFPPAALLAIQFPVMGYLE 122
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 120
++R Q W GS G + +P F+P+G+G + +MK LKE+K
Sbjct: 123 NKRIQGWMATGSSGV--------------NETFP----FDPMGMGSKDANMK---LKEIK 161
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGR AM+A +G VQ +V GP L DH+++P N+ T++
Sbjct: 162 NGRAAMIAFVGIVVQAIVYREGPVAALKDHISNPFGCNMATNI 204
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P TL +E+ +
Sbjct: 143 MLATLGALSVEWL---------TGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLV 193
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL +D + +
Sbjct: 194 IGYIEFQRNAE------------LDPEKRL-------YPGGKFFDPLGLAEDPEKKAVLQ 234
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ VTG GP N HL+DP++ ++ +
Sbjct: 235 LAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFS 283
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 48 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 107
L E LM + E RR+QD+ N GS+ K + + YPGG +F+P G K
Sbjct: 121 LLAWEFILMHWVEVRRWQDYKNFGSVNEDPIFKGNKV--PNPEMGYPGG-IFDPFGFSKG 177
Query: 108 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
++K+ + KE+KNGRLAM+A + + +Q TG GP L HL++P NN+L ++
Sbjct: 178 --NLKELQTKEIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 231
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 99 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138
++PLGLG D ++K ++ E+++ R AML + G VQ +V
Sbjct: 55 WDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV 94
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P L +E +
Sbjct: 144 MLATLGALSVEWL---------TGVTWQDAGKVELVEGSSYLGQPLPFSITALIWIEAVI 194
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 195 IGYIEFQRNAE------------LDPEKRL-------YPGGQFFDPLGLASDPEKKATLQ 235
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ VTG GP N HL+DP++ ++ +L
Sbjct: 236 LAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPLHTTIIDNLS 284
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA+ E L T + W G + Y P TL +E+ +
Sbjct: 147 MLATLGALTVEWL---------TGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLV 197
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 198 IGYIEFQRNAE------------LDSEKRL-------YPGGKFFDPLGLASDPEKKATLQ 238
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ TG GP N HL+DP++ ++ +
Sbjct: 239 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 287
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 33/169 (19%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA++ E L T + W G + +Y P TL +E+ +
Sbjct: 149 MLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLV 199
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 115
+G+ E +R + L EK L YPGG F+PLGL D + +
Sbjct: 200 VGYIEFQRNAE------------LDSEKRL-------YPGGKYFDPLGLAADPEKRAQLQ 240
Query: 116 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 164
L E+K+ RLAM+A LG+ VQ TG GP N HL+DP++ ++ +
Sbjct: 241 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 289
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.143 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,138,880,442
Number of Sequences: 23463169
Number of extensions: 143751570
Number of successful extensions: 288679
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 283961
Number of HSP's gapped (non-prelim): 3193
length of query: 166
length of database: 8,064,228,071
effective HSP length: 127
effective length of query: 39
effective length of database: 9,379,372,904
effective search space: 365795543256
effective search space used: 365795543256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)