BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031053
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 280 bits (717), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/166 (83%), Positives = 144/166 (86%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPEILGKAGLIPQETAL WF+TG IPPAGTYNYWAD YTLFV EMALMGFAE
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAE 170
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK LGGSG+PAY KDEKS+KD KLKEVK
Sbjct: 171 HRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVK 230
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 166
NGRLAMLAILGYFVQ LVTGVGPYQNLLDHL DPV+NN+LTSLKFH
Sbjct: 231 NGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 246 bits (627), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 124/152 (81%), Positives = 129/152 (84%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAE
Sbjct: 14 MLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAE 73
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
HRR QDW NPGSMG+QYFLG EK L GSG+PAY KDEKS+K+ KLKEVK
Sbjct: 74 HRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 133
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 152
NGRLAMLAILGYF+QGLVTGVGPYQNLLDHLA
Sbjct: 134 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 241 bits (614), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 126/146 (86%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAE
Sbjct: 27 MLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 86
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
HRRFQDWA PGSMG+QYFLG EK GGSG+PAY KDEKS+K+ KLKEVK
Sbjct: 87 HRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 146
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQN 146
NGRLAMLAILGYF+QGLVTGVGPYQN
Sbjct: 147 NGRLAMLAILGYFIQGLVTGVGPYQN 172
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 16/163 (9%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G+I W+ AG Y+A TLFV+E L + E
Sbjct: 19 MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 69
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y +G+ Y E K KE+
Sbjct: 70 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIA 122
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRLAMLA LG+ +Q VTG GP+ NLL H++DP +N ++ +L
Sbjct: 123 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 21 MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 71
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGS-GDPAYXXXXXXXXXXXXKDEKSMKDFKLKEV 119
RR+ D NPG + K G G P + +K+ + KE+
Sbjct: 72 GRRWADILNPGCVNTDPIFPNNKLTGTDVGYPG--GLWFDPLGWGSASPQKLKELRTKEI 129
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 130 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 173
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 41 MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 91
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGS-GDPAYXXXXXXXXXXXXKDEKSMKDFKLKEV 119
RR+ D NPG + K G G P + +K+ + KE+
Sbjct: 92 GRRWADILNPGCVNTDPIFPNNKLTGTDVGYPG--GLWFDPLGWGSASPQKLKELRTKEI 149
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154
KNGRLAMLA++G + Q + TG GP NL HLADP
Sbjct: 150 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 184
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 86/168 (51%), Gaps = 28/168 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 73 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAC 130
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
++ LMG E R G +G + Y GGS DP D ++
Sbjct: 131 QVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDP----------LGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 174 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 221
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G++ PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 73 MLGALGSVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 130
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
++ LMG E R G +G + Y GGS DP D ++
Sbjct: 131 QVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDP----------LGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 174 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 87/170 (51%), Gaps = 28/170 (16%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 51
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 73 MLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 130
Query: 52 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSM 111
++ LMG E R G +G + Y GGS DP D ++
Sbjct: 131 QVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDP----------LGLADDPEAF 173
Query: 112 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 161
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN +
Sbjct: 174 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 17/163 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G+I W+ AG Y+A TLFV+E L + E
Sbjct: 103 MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 153
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y +G+ Y E K KE+
Sbjct: 154 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIA 206
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 163
NGRL MLA LG+ +Q VTG GP+ NLL H++DP +N ++ +L
Sbjct: 207 NGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 248
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 106 KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
+D ++++ F E+ NGR AML + G + + T +G
Sbjct: 83 EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 119
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 114 MLGAAGIFIPEFLTKLGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAE 164
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXX-XXKDEKSMKDFKLKEV 119
RR+ D NPG + K G D Y + +K+ + KE+
Sbjct: 165 GRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 120 KNGRLAMLAILGYFVQGLVTGVGPYQNLL-DHLADP 154
KNGRLAMLA++G + Q + TG GP NL HLADP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP 258
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 17/160 (10%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 60
MLG G + PE+ G+I W+ AG Y+A TLFV+E L + E
Sbjct: 23 MLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVE 73
Query: 61 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVK 120
RR+QD NPGS+ + F++Y +G+ Y E K KE+
Sbjct: 74 IRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIA 126
Query: 121 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
NGRL MLA LG+ +Q VTG GP+ NLL H++DP +N ++
Sbjct: 127 NGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIV 165
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 106 KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142
+D ++++ F E+ NGR AML + G + + T +G
Sbjct: 3 EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 39
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 95 MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 147
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDF 114
+ F EH+R + +P +KY GG+ DP KD K +++
Sbjct: 148 AIAFVEHQRSME-KDPEK---------KKYPGGAFDP----------LGYSKDPKKLEEL 187
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 188 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 47 MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 99
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDF 114
+ F EH+R + +P +KY GG+ DP KD K +++
Sbjct: 100 AIAFVEHQRSME-KDPEK---------KKYPGGAFDP----------LGYSKDPKKLEEL 139
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 159
K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 140 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 185
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMA 54
ML G + PE LG + A W P G Y +P T+ +E
Sbjct: 35 MLAVPGILVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFL 87
Query: 55 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDF 114
+ F EH+R + +P +KY GG+ DP KD K +++
Sbjct: 88 AIAFVEHQRSME-KDPEK---------KKYPGGAFDP----------LGYSKDPKKLEEL 127
Query: 115 KLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADP 154
K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP
Sbjct: 128 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 168
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 38/167 (22%)
Query: 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMAL 55
ML +GA+ E L T + W G + +Y P TL +E+ +
Sbjct: 104 MLATLGALTVEGL---------TGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLV 154
Query: 56 MGFAEHRRFQDWANPGSMGRQYFLGFEK--YLGGSGDPAYXXXXXXXXXXXXKDEKSMKD 113
+G+ E +R + L EK Y GG+ DP D +
Sbjct: 155 IGYIEFQRNAE------------LDTEKRLYPGGTFDP----------LGLASDPEKKPI 192
Query: 114 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160
+L E+K+ RLAM+ LG+ VQ VTG GP N + HL+DP++ +L
Sbjct: 193 LQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTTIL 239
>pdb|2GOI|A Chain A, Crystal Structure Of Mouse Sperm C-Type Lysozyme-Like
Protein 1
pdb|2GOI|B Chain B, Crystal Structure Of Mouse Sperm C-Type Lysozyme-Like
Protein 1
pdb|2GOI|C Chain C, Crystal Structure Of Mouse Sperm C-Type Lysozyme-Like
Protein 1
Length = 138
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 109 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 158
K M DF L + LA L Y+ G T N +DH AD NN
Sbjct: 12 KEMHDFGLDGYRGYNLADWVCLAYYTSGFNT------NAVDHEADGSTNN 55
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 34 PPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 78
P AG+ WA Y + + +H F D + P S +Y+
Sbjct: 171 PTAGSSGNWASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYY 215
>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOF|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOG|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
pdb|2ZOG|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
Length = 479
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 8 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYW-ADPYTLFVLEMALMG 57
+ P +LGK G PQ+ + + + PA + W ++P+TL E L G
Sbjct: 81 LPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYG 131
>pdb|1ARB|A Chain A, The Primary Structure And Structural Characteristics Of
Achromobacter Lyticus Protease I, A Lysine-Specific
Serine Protease
pdb|1ARC|A Chain A, The Primary Structure And Structural Characteristics Of
Achromobacter Lyticus Protease I, A Lysine-specific
Serine Protease
Length = 268
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 6 GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQ 65
G P G P++ L G + T +D Y V G A R
Sbjct: 187 GVTEPGSSGSPIYSPEKRVLGQLHGGPSSCSATGTNRSDQYGR-VFTSWTGGGAAASRLS 245
Query: 66 DWANPGSMGRQYFLGFEKYLGGSGDP 91
DW +P S G Q+ G + G G P
Sbjct: 246 DWLDPASTGAQFIDGLDS---GGGTP 268
>pdb|3O9M|A Chain A, Co-Crystallization Studies Of Full Length Recombinant Bche
With Cocaine Offers Insights Into Cocaine Detoxification
pdb|3O9M|B Chain B, Co-Crystallization Studies Of Full Length Recombinant Bche
With Cocaine Offers Insights Into Cocaine Detoxification
Length = 574
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 2 LGAVGAIA----PEILGKAGLIPQETALAWFQTGV 32
+GA+G +A PE G GL Q+ AL W Q +
Sbjct: 148 VGALGFLALPGNPEAPGNMGLFDQQLALQWVQKNI 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,182,745
Number of Sequences: 62578
Number of extensions: 198082
Number of successful extensions: 376
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 45
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)