Query 031053
Match_columns 166
No_of_seqs 138 out of 1068
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00048 photosystem I light h 100.0 2E-47 4.3E-52 321.2 9.9 166 1-166 97-262 (262)
2 PLN00101 Photosystem I light-h 100.0 1E-42 2.2E-47 290.8 9.1 148 1-164 103-250 (250)
3 PLN00098 light-harvesting comp 100.0 4.6E-42 1E-46 289.1 10.4 155 1-166 112-267 (267)
4 PLN00097 photosystem I light h 100.0 1.2E-41 2.7E-46 283.3 10.3 150 1-160 94-243 (244)
5 PLN00147 light-harvesting comp 100.0 2.1E-41 4.5E-46 283.3 10.1 156 1-165 95-251 (252)
6 PLN00025 photosystem II light 100.0 6.3E-40 1.4E-44 275.5 9.5 144 1-163 103-255 (262)
7 PLN00187 photosystem II light- 100.0 9.6E-39 2.1E-43 270.9 8.9 135 1-164 145-285 (286)
8 PLN00171 photosystem light-ha 100.0 1.1E-37 2.4E-42 267.5 9.3 153 1-164 160-323 (324)
9 PLN00099 light-harvesting comp 100.0 7.2E-37 1.6E-41 254.9 9.5 135 1-164 94-237 (243)
10 PLN00100 light-harvesting comp 100.0 3.6E-35 7.7E-40 244.6 7.6 125 1-163 85-209 (246)
11 PLN00170 photosystem II light- 100.0 1E-32 2.2E-37 231.0 8.5 135 1-148 107-254 (255)
12 PLN00089 fucoxanthin-chlorophy 99.9 8.1E-25 1.7E-29 179.3 6.4 118 1-145 87-208 (209)
13 PF00504 Chloroa_b-bind: Chlor 99.9 1.5E-22 3.2E-27 157.7 7.9 114 1-137 41-156 (156)
14 PLN00120 fucoxanthin-chlorophy 99.8 1.4E-21 3E-26 159.5 7.2 118 1-144 76-198 (202)
15 PLN00098 light-harvesting comp 99.7 1.4E-17 3.1E-22 140.7 3.6 57 90-146 76-132 (267)
16 PLN00170 photosystem II light- 99.7 4.6E-17 1E-21 136.8 6.1 75 59-142 49-123 (255)
17 PLN00101 Photosystem I light-h 99.7 5.4E-17 1.2E-21 136.1 4.9 55 90-144 67-121 (250)
18 PLN00147 light-harvesting comp 99.6 3.9E-16 8.5E-21 131.1 4.7 54 89-142 58-111 (252)
19 PLN00171 photosystem light-ha 99.6 5E-16 1.1E-20 134.0 4.3 56 89-144 123-178 (324)
20 PLN00097 photosystem I light h 99.6 7.9E-16 1.7E-20 128.7 4.8 54 90-143 58-111 (244)
21 PLN00025 photosystem II light 99.6 1E-15 2.2E-20 129.3 4.6 53 90-142 67-119 (262)
22 PLN00187 photosystem II light- 99.6 2.4E-15 5.3E-20 128.2 5.3 52 90-141 66-160 (286)
23 PLN00100 light-harvesting comp 99.6 2.6E-15 5.7E-20 125.6 4.5 50 90-139 49-98 (246)
24 PLN00099 light-harvesting comp 99.5 3.8E-15 8.2E-20 124.7 4.1 50 90-139 58-107 (243)
25 PLN00048 photosystem I light h 99.5 1.1E-14 2.3E-19 123.1 4.4 56 90-146 56-117 (262)
26 PF00504 Chloroa_b-bind: Chlor 99.5 5E-14 1.1E-18 109.7 5.3 50 91-141 7-56 (156)
27 PLN00089 fucoxanthin-chlorophy 99.5 5.6E-14 1.2E-18 115.4 4.9 49 94-142 54-103 (209)
28 PLN00120 fucoxanthin-chlorophy 99.2 4E-12 8.6E-17 104.0 3.1 44 93-137 42-87 (202)
29 PHA02337 putative high light i 98.1 1.8E-06 4E-11 52.1 2.4 28 116-143 4-31 (35)
30 PLN00084 photosystem II subuni 97.9 6.6E-06 1.4E-10 66.1 2.2 39 111-149 132-171 (214)
31 PLN00014 light-harvesting-like 97.7 1.9E-05 4.1E-10 66.0 2.2 38 114-151 159-196 (250)
32 PLN02449 ferrochelatase 52.0 8.7 0.00019 35.6 1.7 21 124-144 463-483 (485)
33 PHA00649 hypothetical protein 28.2 68 0.0015 22.5 2.7 30 106-136 31-67 (83)
34 PHA00003 B internal scaffoldin 21.6 1.4E+02 0.003 22.6 3.4 34 91-127 42-75 (120)
No 1
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=2e-47 Score=321.21 Aligned_cols=166 Identities=88% Similarity=1.460 Sum_probs=151.7
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 80 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~ 80 (166)
|||++|+++||++++.|++.......||++++++..+..+|++.+.+++++|+++||++|.+|++++++||+++...+.+
T Consensus 97 MLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~ 176 (262)
T PLN00048 97 MLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLG 176 (262)
T ss_pred HHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCccccccccc
Confidence 99999999999999888876544567999999888787789999999999999999999999999999999998888877
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053 81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160 (166)
Q Consensus 81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~ 160 (166)
+++.+.+..|..||||++|||+|+++|+|+++++|++|||||||||+|++||++|+++||+||++||.+||+||+|+||+
T Consensus 177 ~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~ 256 (262)
T PLN00048 177 LEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVL 256 (262)
T ss_pred chhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCccccccc
Confidence 77666655577899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccC
Q 031053 161 TSLKFH 166 (166)
Q Consensus 161 ~~~~~~ 166 (166)
+|+..|
T Consensus 257 ~~~~~~ 262 (262)
T PLN00048 257 TNLKFH 262 (262)
T ss_pred cccccC
Confidence 998753
No 2
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=1e-42 Score=290.76 Aligned_cols=148 Identities=45% Similarity=0.797 Sum_probs=128.2
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 80 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~ 80 (166)
|||++|+++||++++.|.+. .+.|+++++ ..|++.+.+++++|+++||++|.+||+++++||+.+.++.+.
T Consensus 103 Mla~~G~l~~e~l~~~g~~~---~p~w~~ag~------~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~ 173 (250)
T PLN00101 103 MLGVAGMLLPEVFTKIGIIN---APQWYDAGK------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 173 (250)
T ss_pred HHHHHHHHHHHHhcCCCCcC---CCccccccc------hhhcccchHHHHHHHHHHHHHHHHHhhcccCCCccccccccc
Confidence 99999999999999888764 357999774 347777789999999999999999999999999988776653
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053 81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160 (166)
Q Consensus 81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~ 160 (166)
..+.. .+|.+||||. ||||||+++ +++|+||||||||||+|++||++|+++||+||++||.+|++||+|+||+
T Consensus 174 ~~~~~--~gd~~YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~ 246 (250)
T PLN00101 174 QYSLP--PNEVGYPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 246 (250)
T ss_pred ccccC--CccccCCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchh
Confidence 21222 2467899995 999999864 3789999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 031053 161 TSLK 164 (166)
Q Consensus 161 ~~~~ 164 (166)
++++
T Consensus 247 ~~~~ 250 (250)
T PLN00101 247 QTLS 250 (250)
T ss_pred hhcC
Confidence 9975
No 3
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=4.6e-42 Score=289.13 Aligned_cols=155 Identities=42% Similarity=0.757 Sum_probs=134.1
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 80 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~ 80 (166)
|||++|+++||++++.|++. ...||++++ ..|+.++.+++++|+++||++|.+||+++.+||+.+.++.++
T Consensus 112 MLA~~G~~~~e~l~~~g~~~---~~~w~~Ag~------~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~ 182 (267)
T PLN00098 112 MLAVAGILIPECLERLGFIE---NFSWYDAGA------REYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLP 182 (267)
T ss_pred HHHHHHHHHHHHhcCCCccc---ccccccccc------hhhccCchHHHHHHHHHHHHHHHHHhhcccCCcccccccccc
Confidence 99999999999998888754 357999764 357777888999999999999999999999999877665543
Q ss_pred cccccCCCCCCCCCCCCccccCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCcccce
Q 031053 81 FEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159 (166)
Q Consensus 81 ~~~~~~~~~~~~~PG~~~fdPlgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~ 159 (166)
..... ..|.+||||++|||+|+. +|+++++++|++|||||||||+|++||++|+.+||+||++||.+||+||+|+||
T Consensus 183 ~~~~~--~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~ 260 (267)
T PLN00098 183 NKTNP--KPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNV 260 (267)
T ss_pred ccccC--CCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccc
Confidence 22211 135689999999999997 589999999999999999999999999999999999999999999999999999
Q ss_pred eeccccC
Q 031053 160 LTSLKFH 166 (166)
Q Consensus 160 ~~~~~~~ 166 (166)
+++++.+
T Consensus 261 ~~~~~~~ 267 (267)
T PLN00098 261 FSAFTSH 267 (267)
T ss_pred hhhccCC
Confidence 9998754
No 4
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=1.2e-41 Score=283.29 Aligned_cols=150 Identities=45% Similarity=0.769 Sum_probs=131.6
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 80 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~ 80 (166)
|||++||++||++++.|+.. .++||++++.. .|+....+++++|+++||++|.+||+++++||+++.++++.
T Consensus 94 MLa~~G~lv~e~l~~~g~~~---~p~W~~Ag~~~-----~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~ 165 (244)
T PLN00097 94 MLGLAGCVAPELLTKIGMAD---LPNWIDAAKWD-----GYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFG 165 (244)
T ss_pred HHHHhhhhHHHHhcCCCccc---CCccccCCcch-----hccccchhHHHHHHHHHHHHHHHHhhcccCCCccccccccc
Confidence 99999999999999888743 35799987531 25656678999999999999999999999999998888876
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053 81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160 (166)
Q Consensus 81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~ 160 (166)
.++... ..|..|||+. |||+|+.+|+++++++|++|||||||||+|++||++|+++||+||++||.+|++||+|+||+
T Consensus 166 ~~~~~~-~~d~gYPgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 166 ANKGDT-NTDVGYPKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred cccCCc-ccccCCCCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 554222 2467899995 99999999999999999999999999999999999999999999999999999999999996
No 5
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=2.1e-41 Score=283.33 Aligned_cols=156 Identities=47% Similarity=0.898 Sum_probs=131.1
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCccc-cc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQY-FL 79 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~-~~ 79 (166)
|||++|+++||+++..|+.. .+.|++++... + .+.+.++++++|+++||++|.+|+.++.+||+...+. ++
T Consensus 95 MlA~~G~l~~e~~~~~g~~~---~p~w~~ag~~~----~-~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~ 166 (252)
T PLN00147 95 MAGVAGILFTDLLRVTGIRN---LPVWYEAGAVK----F-EFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFF 166 (252)
T ss_pred HHHHhhhhHHHHhccCCCcC---Ccchhhcccch----h-ccccchHHHHHHHHHHHHHHHHhhccccCCCccccccccc
Confidence 99999999999998887753 35799976321 1 2345578899999999999999999999999875532 23
Q ss_pred ccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCcccce
Q 031053 80 GFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 159 (166)
Q Consensus 80 ~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~ 159 (166)
+.+....+ .+++||||++|||+||.+|+++++++|+||||||||||+|++|+++|+++||+||++||.+|++||+|+||
T Consensus 167 g~~~~~~~-~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni 245 (252)
T PLN00147 167 GLEAALEG-LEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTI 245 (252)
T ss_pred cccccccc-cCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchh
Confidence 33322222 35679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccc
Q 031053 160 LTSLKF 165 (166)
Q Consensus 160 ~~~~~~ 165 (166)
++++..
T Consensus 246 ~~~~~~ 251 (252)
T PLN00147 246 IQTLSH 251 (252)
T ss_pred hhhhcC
Confidence 999875
No 6
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=6.3e-40 Score=275.55 Aligned_cols=144 Identities=46% Similarity=0.851 Sum_probs=123.6
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCc-cCCCCccccCCCh--------hHHHHHHHHHhhhhhhhhhccccCCC
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPG 71 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~-i~~~g~~~~~~~~--------~~l~~~q~ll~g~vE~~R~~~~~~pg 71 (166)
|||++|+++||++++.|+.+.+ ..||++++ +..+|+++|++++ .+++++|+++||++|.+|+++. |.
T Consensus 103 MLa~~G~i~~e~l~~~g~~~~~--~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~~ 178 (262)
T PLN00025 103 MLGALGCVTPELLAKNGVKFGE--AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--PL 178 (262)
T ss_pred HHHHhhhhhHHHhhcCCcCcCc--ccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--cc
Confidence 9999999999999887775533 47999986 5567777888765 4678889999999999998762 11
Q ss_pred CCCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhh
Q 031053 72 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151 (166)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~ 151 (166)
. ...|..||||+ |||+|+++|+++++++|++|||||||||+|++||++|+++||+||++||.+||
T Consensus 179 ~--------------~~~d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hl 243 (262)
T PLN00025 179 G--------------EGLDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 243 (262)
T ss_pred c--------------ccccCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHh
Confidence 1 01356799998 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccceeecc
Q 031053 152 ADPVNNNVLTSL 163 (166)
Q Consensus 152 ~~p~~~n~~~~~ 163 (166)
+||+|+||+++.
T Consensus 244 adP~~~n~~~~~ 255 (262)
T PLN00025 244 ADPVANNAWAYA 255 (262)
T ss_pred cCccccchhhhh
Confidence 999999998864
No 7
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=9.6e-39 Score=270.94 Aligned_cols=135 Identities=36% Similarity=0.711 Sum_probs=116.2
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCC-CCccccCCCh-----hHHHHHHHHHhhhhhhhhhccccCCCCCC
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPP-AGTYNYWADP-----YTLFVLEMALMGFAEHRRFQDWANPGSMG 74 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~-~g~~~~~~~~-----~~l~~~q~ll~g~vE~~R~~~~~~pg~~~ 74 (166)
|||++||++||++. +..|+++|++.. .| ..|++.+ .+++++|+++||++|.+|+++..
T Consensus 145 MLAvaG~lvpEll~---------G~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~~------ 208 (286)
T PLN00187 145 MLATLGALSVEALT---------GVTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELD------ 208 (286)
T ss_pred HHHhhchhhHHhcc---------CCccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccCCC------
Confidence 99999999999873 236999887432 33 2465543 57899999999999999986521
Q ss_pred cccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCC
Q 031053 75 RQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 154 (166)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p 154 (166)
..+..||||+.|||+|+++|+++++++|++|||||||||+|++||++|+++||+||++||.+|++||
T Consensus 209 -------------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp 275 (286)
T PLN00187 209 -------------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 275 (286)
T ss_pred -------------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCc
Confidence 0245699998899999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeccc
Q 031053 155 VNNNVLTSLK 164 (166)
Q Consensus 155 ~~~n~~~~~~ 164 (166)
+|+||++++.
T Consensus 276 ~~~n~~~~~~ 285 (286)
T PLN00187 276 LHTTIIDTFS 285 (286)
T ss_pred ccccHHHhcc
Confidence 9999999875
No 8
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.1e-37 Score=267.48 Aligned_cols=153 Identities=45% Similarity=0.778 Sum_probs=124.2
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCC-ccccCCCh----------hHHHHHHHHHhhhhhhhhhccccC
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGFAEHRRFQDWAN 69 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g-~~~~~~~~----------~~l~~~q~ll~g~vE~~R~~~~~~ 69 (166)
|||++|+++||++++.|... ...++||++|.....+ ..+|++.+ .+++++|+++|+.+|.+|++++.+
T Consensus 160 MLA~~G~lv~e~l~~~g~~~-~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~ 238 (324)
T PLN00171 160 MLAALGVVIPEVLDLFGAVH-FAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEA 238 (324)
T ss_pred HHHHhhHHHHHHhccCCccc-cCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccc
Confidence 99999999999998876542 1235799998644322 23344333 357899999999999999988754
Q ss_pred CCCCCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHh
Q 031053 70 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 149 (166)
Q Consensus 70 pg~~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~ 149 (166)
+++.+ ...+ +|..||||.+|||+|+++|+++++++|++|||||||||+|++||++|+.+||++|++||.+
T Consensus 239 ~~~~g--------~~~P--GD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~ 308 (324)
T PLN00171 239 LEPLG--------IYLP--GDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD 308 (324)
T ss_pred cCCcc--------ccCC--CcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 43221 1112 4667999988999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccceeeccc
Q 031053 150 HLADPVNNNVLTSLK 164 (166)
Q Consensus 150 ~~~~p~~~n~~~~~~ 164 (166)
|++||+||||++++.
T Consensus 309 hladP~~~Ni~~~~~ 323 (324)
T PLN00171 309 HLSDPLHNNLLSSLK 323 (324)
T ss_pred HhcCccccchHHHhc
Confidence 999999999999874
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=7.2e-37 Score=254.91 Aligned_cols=135 Identities=41% Similarity=0.732 Sum_probs=110.3
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCcc--CCCCccccCC------ChhHHHHHHHHHhhhhhhhhhccccCCCC
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVI--PPAGTYNYWA------DPYTLFVLEMALMGFAEHRRFQDWANPGS 72 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i--~~~g~~~~~~------~~~~l~~~q~ll~g~vE~~R~~~~~~pg~ 72 (166)
|||++|+++||+++. ..|+++++. ...|...|++ ..++++++|+++||++|.+|+... .+
T Consensus 94 MLAv~G~i~~E~l~~---------~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~-~~-- 161 (243)
T PLN00099 94 MLAVPGILVPEALGL---------GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DP-- 161 (243)
T ss_pred HHHHhhHHHHHHhcc---------CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC-CC--
Confidence 999999999998753 146665531 1123333432 336788999999999999887431 11
Q ss_pred CCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhh-ccccccchhhhHhhh
Q 031053 73 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG-LVTGVGPYQNLLDHL 151 (166)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~-~~tg~gp~~nl~~~~ 151 (166)
.+..|||| .|||+|+.+|+++++++|+||||||||||+|++||++|+ .+||++|++||.+|+
T Consensus 162 ----------------~~~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hl 224 (243)
T PLN00099 162 ----------------EKKKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 224 (243)
T ss_pred ----------------CCCcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHh
Confidence 23469999 799999999999999999999999999999999999998 579999999999999
Q ss_pred cCCcccceeeccc
Q 031053 152 ADPVNNNVLTSLK 164 (166)
Q Consensus 152 ~~p~~~n~~~~~~ 164 (166)
+||+|+||++.++
T Consensus 225 adp~~~N~~~~~~ 237 (243)
T PLN00099 225 ADPWHNNIGDIII 237 (243)
T ss_pred cCCccCceeeeec
Confidence 9999999999887
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=3.6e-35 Score=244.57 Aligned_cols=125 Identities=34% Similarity=0.541 Sum_probs=106.3
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 80 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~ 80 (166)
|||++|+++||+++. +.|++++.. .|..+.++++++|+++||++|.+|+++++++|+
T Consensus 85 Mla~~G~~~~E~~~~---------P~w~~ag~~------~~~~~~~~l~~iqill~g~~E~~r~~~~~~~g~-------- 141 (246)
T PLN00100 85 MAATAGILFTDAVGL---------PKFWEAGAE------KYGLDLQTLVLIQVVVMAVLEAARYRGFMKTGE-------- 141 (246)
T ss_pred HHHHhhhhHHHHhcc---------cchhhcchh------hhccchhHHHHHHHHHHHHHhhhcccccccccc--------
Confidence 999999999998752 358886632 233455788999999999999999988765432
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053 81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160 (166)
Q Consensus 81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~ 160 (166)
.++|||+.|||+|+++ +++|+||||||||||+|++||++|+++||+||++||.+|++||+|+||+
T Consensus 142 ----------~~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~ 206 (246)
T PLN00100 142 ----------SGVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIF 206 (246)
T ss_pred ----------cCCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccc
Confidence 3468999999999963 5789999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 031053 161 TSL 163 (166)
Q Consensus 161 ~~~ 163 (166)
++.
T Consensus 207 ~~~ 209 (246)
T PLN00100 207 TSS 209 (246)
T ss_pred cCC
Confidence 874
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.98 E-value=1e-32 Score=230.98 Aligned_cols=135 Identities=31% Similarity=0.570 Sum_probs=109.4
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 80 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~ 80 (166)
|||++||++||++. +..||++|+.+.. . ......+++++|+++||++|.+||+++++||++..+++++
T Consensus 107 MLa~~G~~v~e~l~---------g~~w~~aG~~~~~--~-~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p 174 (255)
T PLN00170 107 MAAVVGIFVGQAWS---------GIPWFEAGADPGA--I-APFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATP 174 (255)
T ss_pred HHHHHhhhhHHHcc---------CCChhhCCccccc--c-CccchHHHHHHHHHHhhhhhheeeccccCCcccccccccc
Confidence 99999999999874 2369998864311 1 1112357899999999999999999999999988777654
Q ss_pred cc----cccCCCCCCCCCCCCccccCCCCC---------ChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhh
Q 031053 81 FE----KYLGGSGDPAYPGGPLFNPLGLGK---------DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 147 (166)
Q Consensus 81 ~~----~~~~~~~~~~~PG~~~fdPlgl~~---------~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl 147 (166)
.. ......++..|||+..|||+||++ |+++++++|++|||||||||+|++||++|+ .||+||++||
T Consensus 175 ~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l 253 (255)
T PLN00170 175 WSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 253 (255)
T ss_pred cccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhh
Confidence 32 111122466899998899999985 789999999999999999999999999999 7999999998
Q ss_pred H
Q 031053 148 L 148 (166)
Q Consensus 148 ~ 148 (166)
.
T Consensus 254 ~ 254 (255)
T PLN00170 254 G 254 (255)
T ss_pred c
Confidence 4
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.91 E-value=8.1e-25 Score=179.29 Aligned_cols=118 Identities=29% Similarity=0.314 Sum_probs=84.8
Q ss_pred CccccchhhhhhhccCCCCCcc-ccccccccC-ccCCCCccccCCChhHHHHHHHH-HhhhhhhhhhccccCCCCCCccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQE-TALAWFQTG-VIPPAGTYNYWADPYTLFVLEMA-LMGFAEHRRFQDWANPGSMGRQY 77 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~-~~~~w~~ag-~i~~~g~~~~~~~~~~l~~~q~l-l~g~vE~~R~~~~~~pg~~~~~~ 77 (166)
|||++|+++||+++.+|.+... ..++|+++. ++|. .-+++|++ +||++|..+.. +....
T Consensus 87 MlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~-----------~g~~~Qi~~~ig~~E~~~~~----~~~~~--- 148 (209)
T PLN00089 87 MLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLK-----------SGAMIQIFAWIGFVDLAVSA----PAAAA--- 148 (209)
T ss_pred HHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcc-----------cccHHHHHHHHHHHHHHHhh----ccccc---
Confidence 9999999999998888864211 112333322 1111 11256865 69999965322 11100
Q ss_pred ccccccccCCCCCCCCCCCCccccCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchh
Q 031053 78 FLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 145 (166)
Q Consensus 78 ~~~~~~~~~~~~~~~~PG~~~fdPlgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~ 145 (166)
. ..+.++|||++|||+|+. +|+++++++|++|||||||||+|++|+++|+++||+++++
T Consensus 149 ------~---~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 149 ------A---AEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred ------c---ccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 0 022469999999999995 7899999999999999999999999999999999998763
No 13
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.87 E-value=1.5e-22 Score=157.72 Aligned_cols=114 Identities=35% Similarity=0.434 Sum_probs=84.0
Q ss_pred CccccchhhhhhhccCCC-CCccccccccccCccCCCCccccCCChhHHHHHH-HHHhhhhhhhhhccccCCCCCCcccc
Q 031053 1 MLGAVGAIAPEILGKAGL-IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLE-MALMGFAEHRRFQDWANPGSMGRQYF 78 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~-~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q-~ll~g~vE~~R~~~~~~pg~~~~~~~ 78 (166)
|||++|++++|+++..+. ......+.|++++. .. .+..+++| +++||++|.+|.++...+.+..
T Consensus 41 MLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~---- 106 (156)
T PF00504_consen 41 MLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG---------IP-VPAAGWAQILLFIGALEPWRQQGVPEPGEGG---- 106 (156)
T ss_dssp HHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS---------SS-SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS----
T ss_pred hhhhHHHHHHHHhccCCcccccccccchhhhhh---------hh-hhhHHHHHHHHHHhHhhhhhcccccCCcccc----
Confidence 999999999999976432 21112334766431 11 23345544 6689999999998765443211
Q ss_pred cccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhc
Q 031053 79 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137 (166)
Q Consensus 79 ~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~ 137 (166)
..+..+|||++|||+|+.+|+++.+++|.+||+||||||+|++|+++|+.
T Consensus 107 ---------~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 ---------GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp ---------SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ---------cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 13457999999999999989999999999999999999999999999973
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.85 E-value=1.4e-21 Score=159.51 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=77.8
Q ss_pred Cccccchhhhhh-hccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHH-HhhhhhhhhhccccCCCCCCcccc
Q 031053 1 MLGAVGAIAPEI-LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMA-LMGFAEHRRFQDWANPGSMGRQYF 78 (166)
Q Consensus 1 MLA~~G~lvpE~-l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~l-l~g~vE~~R~~~~~~pg~~~~~~~ 78 (166)
|||++|+++||+ .+.+|.+.. .+..+-+ +| .+ ...+...+..+|+|++ +||++|..++++..
T Consensus 76 MlA~~G~~~~~~g~~~Pg~~~~-~g~~~~~---~p-~~-~~a~~~vp~~g~~qi~~~ig~~E~~~~~~~~---------- 139 (202)
T PLN00120 76 MLAVVGYLVTEAGIRLPGDIDY-SGTSFSD---IP-NG-FAALDAIPTAGLLQILAFIGFLELAVMKDIT---------- 139 (202)
T ss_pred HHhhccceeecccccCCCcccc-ccccccc---cc-cc-hhhhhhcchhHHHHHHHHHHHHHHHhhcccc----------
Confidence 999999999997 444564421 1111211 11 11 1122333456688865 79999988765431
Q ss_pred cccccccCCCCCCCCCCCCccc--cCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053 79 LGFEKYLGGSGDPAYPGGPLFN--PLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144 (166)
Q Consensus 79 ~~~~~~~~~~~~~~~PG~~~fd--Plgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~ 144 (166)
++.++|||+.++ ++|+. .|+++.+++|++|||||||||+|++|+++|+.++|..|+
T Consensus 140 ----------~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~~~ 198 (202)
T PLN00120 140 ----------GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVELPI 198 (202)
T ss_pred ----------cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcC
Confidence 112467743222 33333 278889999999999999999999999999999998775
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.68 E-value=1.4e-17 Score=140.72 Aligned_cols=57 Identities=37% Similarity=0.587 Sum_probs=53.0
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhh
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 146 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~n 146 (166)
|..+|||++|||+||++|+++++++|++||||||+||+|++|+++|+++++.|++++
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 456999999999999999999999999999999999999999999999998887764
No 16
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.68 E-value=4.6e-17 Score=136.78 Aligned_cols=75 Identities=31% Similarity=0.435 Sum_probs=63.6
Q ss_pred hhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcc
Q 031053 59 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 138 (166)
Q Consensus 59 vE~~R~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~ 138 (166)
..-+||.+..+|+++...|. + .|..+|||++|||++|.+|+++++++|++||+||||||+|++||++|+++
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~-----~----l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l 119 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPE-----W----LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 119 (255)
T ss_pred CCCccccCCCCCCcccCCcc-----c----ccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHc
Confidence 45568888888887654432 2 34569999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 031053 139 TGVG 142 (166)
Q Consensus 139 tg~g 142 (166)
+|..
T Consensus 120 ~g~~ 123 (255)
T PLN00170 120 SGIP 123 (255)
T ss_pred cCCC
Confidence 8764
No 17
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.66 E-value=5.4e-17 Score=136.12 Aligned_cols=55 Identities=36% Similarity=0.633 Sum_probs=52.2
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~ 144 (166)
|..+|||++|||+||++|+++++++|++||+||||||+|++|+++|+++++.|++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4569999999999999999999999999999999999999999999999998876
No 18
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.61 E-value=3.9e-16 Score=131.14 Aligned_cols=54 Identities=33% Similarity=0.519 Sum_probs=49.9
Q ss_pred CCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcccccc
Q 031053 89 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142 (166)
Q Consensus 89 ~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~g 142 (166)
-|..+|||++|||+||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 58 Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 58 LDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 356799999999999999999999999999999999999999999999987654
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.60 E-value=5e-16 Score=134.02 Aligned_cols=56 Identities=30% Similarity=0.404 Sum_probs=50.8
Q ss_pred CCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053 89 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144 (166)
Q Consensus 89 ~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~ 144 (166)
-|..+|||++|||+||++|+++++++|++||||||+||+|++|+++|+++++.+.+
T Consensus 123 LdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 123 LTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred cCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 35669999999999999999999999999999999999999999999998765543
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.59 E-value=7.9e-16 Score=128.69 Aligned_cols=54 Identities=35% Similarity=0.521 Sum_probs=50.4
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccc
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 143 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp 143 (166)
|...|||++|||+||++|+++++++|++||+|||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 456899999999999999999999999999999999999999999999987654
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.59 E-value=1e-15 Score=129.26 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=49.2
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcccccc
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~g 142 (166)
|..+|||++|||+||++|+++++++|++||+|||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 45689999999999999999999999999999999999999999999987543
No 22
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.57 E-value=2.4e-15 Score=128.21 Aligned_cols=52 Identities=40% Similarity=0.611 Sum_probs=47.4
Q ss_pred CCCCCCCCccccCCCCCChhh-------------------------------------------hhHHHHHHhhhhhHHH
Q 031053 90 DPAYPGGPLFNPLGLGKDEKS-------------------------------------------MKDFKLKEVKNGRLAM 126 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~-------------------------------------------~~~~~~~El~nGRLAM 126 (166)
|..+|||++|||+||+++||. ++++|++||+|||+||
T Consensus 66 dGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAM 145 (286)
T PLN00187 66 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAM 145 (286)
T ss_pred cCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHH
Confidence 455999999999999988886 5999999999999999
Q ss_pred HHhhhhhhhhccccc
Q 031053 127 LAILGYFVQGLVTGV 141 (166)
Q Consensus 127 la~~g~~~q~~~tg~ 141 (166)
+|++||+++|+++|.
T Consensus 146 LAvaG~lvpEll~G~ 160 (286)
T PLN00187 146 LATLGALSVEALTGV 160 (286)
T ss_pred HHhhchhhHHhccCC
Confidence 999999999998754
No 23
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.55 E-value=2.6e-15 Score=125.58 Aligned_cols=50 Identities=32% Similarity=0.473 Sum_probs=47.2
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccc
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 139 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~t 139 (166)
|..+|||++|||+||++++++++++|++||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 45699999999999999999999999999999999999999999999875
No 24
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.54 E-value=3.8e-15 Score=124.66 Aligned_cols=50 Identities=34% Similarity=0.520 Sum_probs=47.2
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccc
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 139 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~t 139 (166)
|..+|||++|||++|++++++++++|++||||||+||+|++|+++|++++
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~ 107 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 107 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhc
Confidence 45699999999999999999999999999999999999999999999865
No 25
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.51 E-value=1.1e-14 Score=123.14 Aligned_cols=56 Identities=34% Similarity=0.500 Sum_probs=48.1
Q ss_pred CCCCCCCCccccCCCCCChh------hhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhh
Q 031053 90 DPAYPGGPLFNPLGLGKDEK------SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 146 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~------~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~n 146 (166)
|...|||++|||+||+ |++ +.+++|.+||+|||+||+|++||++|+++++.|.+.+
T Consensus 56 dG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 56 DGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred CCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 4568999999999997 443 4578899999999999999999999999988777643
No 26
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.47 E-value=5e-14 Score=109.65 Aligned_cols=50 Identities=42% Similarity=0.651 Sum_probs=46.3
Q ss_pred CCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccc
Q 031053 91 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 141 (166)
Q Consensus 91 ~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~ 141 (166)
..++||++|||+||++++ +++++|..||+|||+||+|++|++++++.++.
T Consensus 7 G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 7 GSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp STSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred CCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 348999999999999777 89999999999999999999999999998874
No 27
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.46 E-value=5.6e-14 Score=115.40 Aligned_cols=49 Identities=41% Similarity=0.651 Sum_probs=44.1
Q ss_pred CCCCccccCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcccccc
Q 031053 94 PGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 142 (166)
Q Consensus 94 PG~~~fdPlgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~g 142 (166)
.||++|||+|++ .++++++++|++||||||+||+|++|+++|+.++..|
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 788899999998 4677899999999999999999999999999876554
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.24 E-value=4e-12 Score=103.99 Aligned_cols=44 Identities=41% Similarity=0.780 Sum_probs=39.9
Q ss_pred CCCCCccccCCCC--CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhc
Q 031053 93 YPGGPLFNPLGLG--KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 137 (166)
Q Consensus 93 ~PG~~~fdPlgl~--~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~ 137 (166)
-|.++ |||+||+ .|+++++++|++||||||+||+|++||++|+.
T Consensus 42 ~p~g~-fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 42 APLGF-FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCC-CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 46664 9999997 57899999999999999999999999999996
No 29
>PHA02337 putative high light inducible protein
Probab=98.13 E-value=1.8e-06 Score=52.06 Aligned_cols=28 Identities=29% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHhhhhhHHHHHhhhhhhhhccccccc
Q 031053 116 LKEVKNGRLAMLAILGYFVQGLVTGVGP 143 (166)
Q Consensus 116 ~~El~nGRLAMla~~g~~~q~~~tg~gp 143 (166)
.+|+-|||+||++++..+..+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999864
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.89 E-value=6.6e-06 Score=66.11 Aligned_cols=39 Identities=36% Similarity=0.486 Sum_probs=35.5
Q ss_pred hhHHHHHHhhhhhHHHHHhhhhhhhhccc-cccchhhhHh
Q 031053 111 MKDFKLKEVKNGRLAMLAILGYFVQGLVT-GVGPYQNLLD 149 (166)
Q Consensus 111 ~~~~~~~El~nGRLAMla~~g~~~q~~~t-g~gp~~nl~~ 149 (166)
.++.|..|+-||||||++|+--++.|++| |+|+++|+..
T Consensus 132 vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 132 VREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred HHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 56678889999999999999999999999 9999999853
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.70 E-value=1.9e-05 Score=65.96 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=34.2
Q ss_pred HHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhh
Q 031053 114 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151 (166)
Q Consensus 114 ~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~ 151 (166)
...+|+-|||+||+||+..++.+.+||+|.++|+..++
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~ 196 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFF 196 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhh
Confidence 35689999999999999999999999999999997643
No 32
>PLN02449 ferrochelatase
Probab=51.97 E-value=8.7 Score=35.64 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=20.3
Q ss_pred HHHHHhhhhhhhhccccccch
Q 031053 124 LAMLAILGYFVQGLVTGVGPY 144 (166)
Q Consensus 124 LAMla~~g~~~q~~~tg~gp~ 144 (166)
+||+|++.+++-++++|.||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999997
No 33
>PHA00649 hypothetical protein
Probab=28.20 E-value=68 Score=22.46 Aligned_cols=30 Identities=20% Similarity=0.526 Sum_probs=18.8
Q ss_pred CChhhhhHHHHHHhhhhh-------HHHHHhhhhhhhh
Q 031053 106 KDEKSMKDFKLKEVKNGR-------LAMLAILGYFVQG 136 (166)
Q Consensus 106 ~~~~~~~~~~~~El~nGR-------LAMla~~g~~~q~ 136 (166)
.+|++.++.| ..+.++| -.|++.+|+.+..
T Consensus 31 ~~P~~VEEFr-~D~~~~Rr~RKA~D~G~L~~VGL~~~~ 67 (83)
T PHA00649 31 DVPEQVEEFR-EDLRFGRRMRKAADHGFLALVGLVAVA 67 (83)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4666666665 4666666 3467777776654
No 34
>PHA00003 B internal scaffolding protein
Probab=21.58 E-value=1.4e+02 Score=22.58 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=21.8
Q ss_pred CCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHH
Q 031053 91 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 127 (166)
Q Consensus 91 ~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMl 127 (166)
+.+|-++.+||.- .|. +.++.+..||.+||-+--
T Consensus 42 ~t~p~gLRrdpvq--~d~-EaERqkr~~iEagk~~c~ 75 (120)
T PHA00003 42 GTDPSGLRRDPVQ--QDL-EAERQKRADIEAGKAICA 75 (120)
T ss_pred CCCccccccCccc--chH-HHHHHHHHHHHHHHHHHH
Confidence 3466666677631 222 346777889999997543
Done!