Query 031053
Match_columns 166
No_of_seqs 138 out of 1068
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_3 LHCA3, type II chloroph 100.0 2.5E-44 8.5E-49 303.4 7.7 166 1-166 111-276 (276)
2 2wsc_2 LHCA2, type II chloroph 100.0 2.6E-40 9E-45 278.0 6.0 154 1-166 114-269 (269)
3 3pl9_A Chlorophyll A-B binding 100.0 1.1E-39 3.9E-44 270.2 3.6 134 1-163 104-242 (243)
4 2wsc_4 Chlorophyll A-B binding 100.0 2.4E-39 8.1E-44 270.0 1.0 148 1-165 103-250 (251)
5 2bhw_A Chlorophyll A-B binding 100.0 6.7E-37 2.3E-41 252.8 8.6 145 1-164 73-226 (232)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 4.4E-34 1.5E-38 237.0 6.9 137 1-164 95-238 (241)
7 2bhw_A Chlorophyll A-B binding 99.6 3.5E-16 1.2E-20 129.0 5.2 51 90-140 37-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.6 3E-16 1E-20 130.7 1.9 55 90-144 67-121 (251)
9 2wsc_2 LHCA2, type II chloroph 99.6 4.8E-16 1.6E-20 130.6 1.0 55 90-144 78-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.5 1.6E-15 5.4E-20 125.6 2.3 51 90-140 25-118 (243)
11 2wsc_1 AT3G54890, LHCA1; photo 99.5 6.1E-15 2.1E-19 122.2 2.1 50 90-139 59-108 (241)
12 2wsc_3 LHCA3, type II chloroph 99.4 1.7E-14 5.7E-19 121.6 -0.7 54 90-144 70-129 (276)
No 1
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=2.5e-44 Score=303.36 Aligned_cols=166 Identities=89% Similarity=1.493 Sum_probs=122.1
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 80 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~ 80 (166)
|||++|+++||++++.|++..+....|++++++|.+|..+||.++.+++++|+++||++|.+|++++.+||+.+.+++++
T Consensus 111 MLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g 190 (276)
T 2wsc_3 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLG 190 (276)
T ss_dssp CCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSC
T ss_pred hhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcccccCCccccccccc
Confidence 99999999999999888876444456999999998898899999999999999999999999999999999998877776
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053 81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160 (166)
Q Consensus 81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~ 160 (166)
.++...+..|..||||++|||+||.+|+++++++|++|||||||||+|++|+++|+++||+||++||.+|++||+||||+
T Consensus 191 ~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~ 270 (276)
T 2wsc_3 191 LEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNIL 270 (276)
T ss_dssp SCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--------------
T ss_pred ccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhh
Confidence 55544444677899999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred eccccC
Q 031053 161 TSLKFH 166 (166)
Q Consensus 161 ~~~~~~ 166 (166)
+++..|
T Consensus 271 ~~~~~~ 276 (276)
T 2wsc_3 271 TSLKFH 276 (276)
T ss_dssp ------
T ss_pred hhccCC
Confidence 998754
No 2
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=2.6e-40 Score=277.96 Aligned_cols=154 Identities=41% Similarity=0.794 Sum_probs=133.9
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 80 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~ 80 (166)
|||++|+++||++++.|+.. .+.|+++| ...|+.++++++++|+++||++|.+|++++.+||+++.++.+.
T Consensus 114 MLA~~G~l~~E~l~~~G~~~---~p~w~~aG------~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~ 184 (269)
T 2wsc_2 114 MLGAAGIFIPEFLTKLGILN---TPSWYTAG------EQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFP 184 (269)
T ss_dssp TTTTHHHHHHHHHCCTTSSS---CCCCCSTT------SSSSCCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSS
T ss_pred HHHHHHhHhHHhhccCCccc---Cccccccc------hhhhhcchHHHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 99999999999999888763 35699865 3467878888999999999999999999999999988776554
Q ss_pred cccccCCCCCCCCCCCCccccCCCC-CChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhH-hhhcCCcccc
Q 031053 81 FEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL-DHLADPVNNN 158 (166)
Q Consensus 81 ~~~~~~~~~~~~~PG~~~fdPlgl~-~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~-~~~~~p~~~n 158 (166)
... .+..|..||||++|||+|+. .|+++++++|.+|||||||||+|++|+++|+.+||+||++||. +|++|| |||
T Consensus 185 ~~~--~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n 261 (269)
T 2wsc_2 185 NNK--LTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HAT 261 (269)
T ss_dssp SCC--SSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCC
T ss_pred ccc--ccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccc
Confidence 221 12246789999999999998 5788899999999999999999999999999999999999999 999999 999
Q ss_pred eeeccccC
Q 031053 159 VLTSLKFH 166 (166)
Q Consensus 159 ~~~~~~~~ 166 (166)
|+++++.|
T Consensus 262 ~~~~~~~~ 269 (269)
T 2wsc_2 262 IFAAFTPK 269 (269)
T ss_dssp CCSSSCCC
T ss_pred hhhhccCC
Confidence 99998754
No 3
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.1e-39 Score=270.19 Aligned_cols=134 Identities=36% Similarity=0.679 Sum_probs=114.3
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCCh-----hHHHHHHHHHhhhhhhhhhccccCCCCCCc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP-----YTLFVLEMALMGFAEHRRFQDWANPGSMGR 75 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~-----~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~ 75 (166)
|||++|+|+||+++ +..|+++|++...+...|++.+ ++++++|+++||++|.+|+++.. +
T Consensus 104 MLAvlG~lvpE~l~---------g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~-~----- 168 (243)
T 3pl9_A 104 MLATLGALTVEGLT---------GITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELD-T----- 168 (243)
T ss_dssp HHHHHHHHHHHHHH---------SCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCC-T-----
T ss_pred HHHHHHHHhHHhhc---------CcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcccC-C-----
Confidence 99999999999985 2368887764322234555433 47899999999999999998631 1
Q ss_pred ccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCc
Q 031053 76 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 155 (166)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~ 155 (166)
.+..||||+ |||+|+++|+++++++|++|||||||||+|++|+++|+++||+||++||.+|++||+
T Consensus 169 -------------~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~HladP~ 234 (243)
T 3pl9_A 169 -------------EKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPL 234 (243)
T ss_dssp -------------TTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHCSG
T ss_pred -------------ccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcc
Confidence 234699998 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecc
Q 031053 156 NNNVLTSL 163 (166)
Q Consensus 156 ~~n~~~~~ 163 (166)
|+||++++
T Consensus 235 ~~ni~~~~ 242 (243)
T 3pl9_A 235 HTTILDRF 242 (243)
T ss_dssp GGSTTTTT
T ss_pred hhhhhhhc
Confidence 99999986
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=2.4e-39 Score=270.05 Aligned_cols=148 Identities=42% Similarity=0.766 Sum_probs=123.3
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCccccCCChhHHHHHHHHHhhhhhhhhhccccCCCCCCcccccc
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 80 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~~~~~~~ 80 (166)
|||++|+++||+++..|++. .+.|+++| ..+|+.++++++++|+++||++|.+|++++.+||+.+.++.+.
T Consensus 103 Mla~~G~~~~e~~~~~g~~~---~p~w~~aG------~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~ 173 (251)
T 2wsc_4 103 MLGVAGMLLPEVFTSIGIIN---VPKWYAAG------KEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFK 173 (251)
T ss_dssp HHHHTTSSTTSSSCCSCSSC---CCCCSCCC------SSSCSSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSC
T ss_pred HHHHHHHHHHHHhcCCCccC---Cccccccc------hHhhhccchHHHHHHHHHHHHHHHHHhhcccCCCccccccccc
Confidence 99999999999999888763 34699865 3457877788889999999999999999999999988766654
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhhcCCccccee
Q 031053 81 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 160 (166)
Q Consensus 81 ~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~~~p~~~n~~ 160 (166)
..+. +..|..||||+ |||+++.+ ++++|+|||||||| |+|++||++|+++||++|++||.+|++||+|+||+
T Consensus 174 ~~~~--~~~d~~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~ 245 (251)
T 2wsc_4 174 QYSL--PAGEVGYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIV 245 (251)
T ss_dssp SSSS--CCHHHHSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSC
T ss_pred cccc--ccccccCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhh
Confidence 3221 11345799997 99999975 56789999999999 99999999999999999999999999999999999
Q ss_pred ecccc
Q 031053 161 TSLKF 165 (166)
Q Consensus 161 ~~~~~ 165 (166)
+++..
T Consensus 246 ~~~~~ 250 (251)
T 2wsc_4 246 QTLGG 250 (251)
T ss_dssp C----
T ss_pred hhhcC
Confidence 98753
No 5
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=6.7e-37 Score=252.79 Aligned_cols=145 Identities=46% Similarity=0.866 Sum_probs=120.1
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCc-cCCCCccccCCCh--------hHHHHHHHHHhhhhhhhhhccccCCC
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPG 71 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~-i~~~g~~~~~~~~--------~~l~~~q~ll~g~vE~~R~~~~~~pg 71 (166)
|||++|+++||++++.|+..+ ...|+++|. +...+.++|++.| .+++++|+++||++|.+|+++- |
T Consensus 73 MLA~~G~lv~E~l~~~G~~~~--~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g--~- 147 (232)
T 2bhw_A 73 MLGALGSVFPELLSRNGVKFG--EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG--P- 147 (232)
T ss_dssp HHHHHHHHHHHHHHTTTCCCS--CCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEE--T-
T ss_pred HHhhhhhhhHHHhccCCcCCc--ccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccC--c-
Confidence 999999999999998887553 457998874 3333334454433 4677889999999999998751 1
Q ss_pred CCCcccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccchhhhHhhh
Q 031053 72 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 151 (166)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~~nl~~~~ 151 (166)
.+ ...|..||||+ |||+|+.+|+++++++|.+|||||||||+|++|+++|+.+||+||++||.+|+
T Consensus 148 -~g------------~~~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~ 213 (232)
T 2bhw_A 148 -LG------------EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 213 (232)
T ss_dssp -TE------------ECSSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHH
T ss_pred -cc------------ccccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 11 01345699997 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccceeeccc
Q 031053 152 ADPVNNNVLTSLK 164 (166)
Q Consensus 152 ~~p~~~n~~~~~~ 164 (166)
+||+|+||+++..
T Consensus 214 adP~~~n~~~~~~ 226 (232)
T 2bhw_A 214 ADPVNNNAWSYAT 226 (232)
T ss_dssp HCTTTSSGGGGTT
T ss_pred cChHHhHHHHHHH
Confidence 9999999999865
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=4.4e-34 Score=236.95 Aligned_cols=137 Identities=42% Similarity=0.784 Sum_probs=100.9
Q ss_pred CccccchhhhhhhccCCCCCccccccccccCccCCCCcccc------CCChhHHHHHHHHHhhhhhhhhhccccCCCCCC
Q 031053 1 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMALMGFAEHRRFQDWANPGSMG 74 (166)
Q Consensus 1 MLA~~G~lvpE~l~~~G~~~~~~~~~w~~ag~i~~~g~~~~------~~~~~~l~~~q~ll~g~vE~~R~~~~~~pg~~~ 74 (166)
|||++|+++||+++..+... ...|.+ ++ .|...| |...++++++|+++||++|.+|+.+. .+
T Consensus 95 Mla~~G~~~~e~~~~~~~~~---a~~~~~---~~-~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~-~~---- 162 (241)
T 2wsc_1 95 MLAVPGILVPEALGYGNWVK---AQEWAA---LP-GGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DP---- 162 (241)
T ss_dssp TTTSTTSSSTTCCCCC--------CCCCS---CS-SCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC-SS----
T ss_pred HhhhhcccchhhccCCcccc---ccchhc---cC-CcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc-CC----
Confidence 99999999999986532111 112322 11 232333 33446788999999999999998642 11
Q ss_pred cccccccccccCCCCCCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhh-ccccccchhhhHhhhcC
Q 031053 75 RQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG-LVTGVGPYQNLLDHLAD 153 (166)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~-~~tg~gp~~nl~~~~~~ 153 (166)
.+..|||| .|||+|+.+|+++++++|.+|||||||||+|++|+++|+ .+||+||++||.+|++|
T Consensus 163 --------------~~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~ad 227 (241)
T 2wsc_1 163 --------------EKKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 227 (241)
T ss_dssp --------------CCSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCC
T ss_pred --------------CCCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcC
Confidence 23469999 599999999999999999999999999999999999999 58999999999999999
Q ss_pred Ccccceeeccc
Q 031053 154 PVNNNVLTSLK 164 (166)
Q Consensus 154 p~~~n~~~~~~ 164 (166)
|+||||++++.
T Consensus 228 P~~~n~~~~~~ 238 (241)
T 2wsc_1 228 PWHNNIGDIVI 238 (241)
T ss_dssp SCC--------
T ss_pred ccccceeeeec
Confidence 99999999875
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.61 E-value=3.5e-16 Score=128.99 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=47.6
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhcccc
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 140 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg 140 (166)
|..+|||++|||+||++|+|+++++|++||||||+||+|++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 445999999999999999999999999999999999999999999998754
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.58 E-value=3e-16 Score=130.69 Aligned_cols=55 Identities=35% Similarity=0.625 Sum_probs=39.3
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~ 144 (166)
+..+|||++|||+||++|+|+++++|.+||+|||+||+|++|+++|+++++.|++
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 3459999999999999999999999999999999999999999999999988776
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.55 E-value=4.8e-16 Score=130.56 Aligned_cols=55 Identities=36% Similarity=0.570 Sum_probs=36.2
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~ 144 (166)
+..+|||++|||+||++|+|+++++|++||||||+||+|++|+++|+++++.|.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 3458999999999999999999999999999999999999999999998876544
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.53 E-value=1.6e-15 Score=125.62 Aligned_cols=51 Identities=39% Similarity=0.602 Sum_probs=28.7
Q ss_pred CCCCCCCCccccCCCCCChh-------------------------------------------hhhHHHHHHhhhhhHHH
Q 031053 90 DPAYPGGPLFNPLGLGKDEK-------------------------------------------SMKDFKLKEVKNGRLAM 126 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~-------------------------------------------~~~~~~~~El~nGRLAM 126 (166)
|..+|||++|||+||+++|| .++++|++||+|||+||
T Consensus 25 dGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAM 104 (243)
T 3pl9_A 25 DGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAM 104 (243)
T ss_dssp ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchhHH
Confidence 34599999999999999887 37899999999999999
Q ss_pred HHhhhhhhhhcccc
Q 031053 127 LAILGYFVQGLVTG 140 (166)
Q Consensus 127 la~~g~~~q~~~tg 140 (166)
+|++|++++|+++|
T Consensus 105 LAvlG~lvpE~l~g 118 (243)
T 3pl9_A 105 LATLGALTVEGLTG 118 (243)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHhHHhhcC
Confidence 99999999999865
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.48 E-value=6.1e-15 Score=122.16 Aligned_cols=50 Identities=36% Similarity=0.560 Sum_probs=46.0
Q ss_pred CCCCCCCCccccCCCCCChhhhhHHHHHHhhhhhHHHHHhhhhhhhhccc
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 139 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~~~~~~~El~nGRLAMla~~g~~~q~~~t 139 (166)
+..+|||++|||+||++|+|+++++|++||||||+||+|++|+++|++++
T Consensus 59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 34589999999999999999999999999999999999999999999864
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.40 E-value=1.7e-14 Score=121.59 Aligned_cols=54 Identities=35% Similarity=0.548 Sum_probs=35.6
Q ss_pred CCCCCCCCccccCCCCCChhhh------hHHHHHHhhhhhHHHHHhhhhhhhhccccccch
Q 031053 90 DPAYPGGPLFNPLGLGKDEKSM------KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 144 (166)
Q Consensus 90 ~~~~PG~~~fdPlgl~~~~~~~------~~~~~~El~nGRLAMla~~g~~~q~~~tg~gp~ 144 (166)
+..+|||++|||+|| +|++++ +++|.+||+|||+||+|++|++++|++++.|.+
T Consensus 70 ~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 70 DGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp ----------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred cCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 345899999999999 688989 999999999999999999999999999876643
Done!