Your job contains 1 sequence.
>031054
MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY
IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE
LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031054
(166 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2056108 - symbol:SVR1 "SUPPRESSOR OF VARIEGATI... 647 2.0e-63 1
TAIR|locus:2102306 - symbol:AT3G43340 species:3702 "Arabi... 242 1.7e-20 1
TIGR_CMR|GSU_1403 - symbol:GSU_1403 "ribosomal large subu... 198 7.7e-16 1
UNIPROTKB|Q3AAS7 - symbol:rluB "Pseudouridine synthase" s... 196 1.3e-15 1
TIGR_CMR|CHY_1938 - symbol:CHY_1938 "ribosomal large subu... 196 1.3e-15 1
TIGR_CMR|DET_0789 - symbol:DET_0789 "pseudouridine syntha... 191 4.2e-15 1
TIGR_CMR|CBU_1059 - symbol:CBU_1059 "pseudouridine syntha... 187 1.1e-14 1
UNIPROTKB|Q9KSS7 - symbol:rluB "Ribosomal large subunit p... 187 2.3e-14 1
TIGR_CMR|VC_1179 - symbol:VC_1179 "pseudouridine synthase... 187 2.3e-14 1
TIGR_CMR|CHY_1531 - symbol:CHY_1531 "ribosomal small subu... 178 1.0e-13 1
UNIPROTKB|P37765 - symbol:rluB "23S rRNA pseudouridine 26... 178 1.5e-13 1
UNIPROTKB|P65842 - symbol:MT1751.1 "Uncharacterized RNA p... 167 1.5e-12 1
TIGR_CMR|CPS_3519 - symbol:CPS_3519 "ribosomal large subu... 172 1.6e-12 1
UNIPROTKB|P0AA43 - symbol:rsuA "16S rRNA pseudouridine 51... 159 1.0e-11 1
TIGR_CMR|CPS_0916 - symbol:CPS_0916 "RNA pseudouridine sy... 161 1.8e-11 1
TIGR_CMR|SPO_2984 - symbol:SPO_2984 "RNA pseudouridine sy... 156 1.1e-10 1
UNIPROTKB|Q9KRK5 - symbol:rsuA "Ribosomal small subunit p... 148 1.5e-10 1
TIGR_CMR|VC_1635 - symbol:VC_1635 "ribosomal small subuni... 148 1.5e-10 1
TIGR_CMR|CPS_2898 - symbol:CPS_2898 "ribosomal large subu... 139 1.4e-09 1
DICTYBASE|DDB_G0276449 - symbol:DDB_G0276449 "Ribosomal l... 146 1.5e-09 1
UNIPROTKB|Q9KPY9 - symbol:VC_2223 "Pseudouridine synthase... 144 1.8e-09 1
TIGR_CMR|VC_2223 - symbol:VC_2223 "pseudouridine synthase... 144 1.8e-09 1
UNIPROTKB|P32684 - symbol:rluF "23S rRNA pseudouridine 26... 138 5.4e-09 1
UNIPROTKB|Q0C148 - symbol:HNE_1844 "Ribosomal large subun... 140 5.9e-09 1
TIGR_CMR|CPS_4413 - symbol:CPS_4413 "putative ribosomal s... 135 6.2e-09 1
TIGR_CMR|CJE_1878 - symbol:CJE_1878 "RNA pseudouridine sy... 131 2.2e-08 1
DICTYBASE|DDB_G0282961 - symbol:DDB_G0282961 species:4468... 131 1.1e-07 1
UNIPROTKB|Q9F855 - symbol:rluE "Ribosomal large subunit p... 121 2.5e-07 1
TIGR_CMR|VC_1140 - symbol:VC_1140 "pseudouridine synthase... 121 2.5e-07 1
TIGR_CMR|CPS_2136 - symbol:CPS_2136 "ribosomal small subu... 117 7.4e-07 1
GENEDB_PFALCIPARUM|PFB0890c - symbol:PFB0890c "pseudourid... 105 9.0e-07 2
UNIPROTKB|O96270 - symbol:PFB0890c "Pseudouridine synthas... 105 9.0e-07 2
TIGR_CMR|SPO_2124 - symbol:SPO_2124 "RNA pseudouridine sy... 91 9.5e-06 2
UNIPROTKB|P75966 - symbol:rluE "23S rRNA pseudouridine 24... 103 0.00027 1
>TAIR|locus:2056108 [details] [associations]
symbol:SVR1 "SUPPRESSOR OF VARIEGATION 1" species:3702
"Arabidopsis thaliana" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;TAS] [GO:0016866 "intramolecular transferase
activity" evidence=IEA] [GO:0000488 "maturation of LSU-rRNA from
tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA,
5S-rRNA)" evidence=IMP] [GO:0000489 "maturation of SSU-rRNA from
tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA,
5S-rRNA)" evidence=IMP] [GO:0009501 "amyloplast" evidence=TAS]
[GO:0032544 "plastid translation" evidence=IMP] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 GO:GO:0009507 EMBL:CP002685 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0032544
GO:GO:0009501 Gene3D:3.10.290.10 HOGENOM:HOG000044954
UniGene:At.66439 EMBL:AY088622 EMBL:AK117682 IPI:IPI00539506
RefSeq:NP_181447.2 UniGene:At.26912 ProteinModelPortal:Q8L960
SMR:Q8L960 STRING:Q8L960 PRIDE:Q8L960 EnsemblPlants:AT2G39140.1
GeneID:818500 KEGG:ath:AT2G39140 TAIR:At2g39140 InParanoid:Q8L960
OMA:NFKEIKF PhylomeDB:Q8L960 ProtClustDB:CLSN2680126
Genevestigator:Q8L960 GO:GO:0000488 GO:GO:0000489 Uniprot:Q8L960
Length = 410
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 120/166 (72%), Positives = 140/166 (84%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLFD+YL SWDKRNPG P+PRLFTVGRLDVATTGLI+VTNDGDFAQ +SHPSS L KEY
Sbjct: 245 ISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEY 304
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRE 120
I T+ G ++KRHL+AISEGT++EG HC PD VEL+ VVHEGRNHEVRE
Sbjct: 305 ITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRE 364
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
LVKNAGL+++SLKR+RIGGFRLPSDLG+G HVELKQS+LK +GWK+
Sbjct: 365 LVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410
>TAIR|locus:2102306 [details] [associations]
symbol:AT3G43340 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR020103
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL138664 IPI:IPI00522225
PIR:T47376 RefSeq:NP_189920.1 UniGene:At.53692 HSSP:P33918
ProteinModelPortal:Q9M185 SMR:Q9M185 STRING:Q9M185
EnsemblPlants:AT3G43340.1 GeneID:823413 KEGG:ath:AT3G43340
TAIR:At3g43340 Genevestigator:Q9M185 Uniprot:Q9M185
Length = 74
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 48/74 (64%), Positives = 56/74 (75%)
Query: 74 IAISEGTVIEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLK 133
+AISEGT++EG HC PD+VEL+ VVHEGRNHEVRELVKN GL++ SLK
Sbjct: 1 MAISEGTMVEGIHCVPDLVELMPKQHDIPRAWLRIVVHEGRNHEVRELVKNVGLEVDSLK 60
Query: 134 RLRIGGFRLPSDLG 147
R+RIGG RLPSDLG
Sbjct: 61 RVRIGGVRLPSDLG 74
>TIGR_CMR|GSU_1403 [details] [associations]
symbol:GSU_1403 "ribosomal large subunit pseudouridine
synthase B" species:243231 "Geobacter sulfurreducens PCA"
[GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 HOGENOM:HOG000044954 KO:K06178
TIGRFAMs:TIGR00093 OMA:KLINGNA RefSeq:NP_952455.1
ProteinModelPortal:Q74DB4 GeneID:2686343 KEGG:gsu:GSU1403
PATRIC:22025649 ProtClustDB:CLSK828335
BioCyc:GSUL243231:GH27-1378-MONOMER Uniprot:Q74DB4
Length = 247
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 45/138 (32%), Positives = 73/138 (52%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD T GL+++TNDG +A ++HP ++ KEY+ + GAV K + ++ G
Sbjct: 97 RVFPVGRLDYNTEGLLLLTNDGAWANRLAHPRHEVDKEYLVRVRGAVAKEQIRRLATGVE 156
Query: 82 IEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ P VE+ V+HEGR +VR + + L + L+R+R G
Sbjct: 157 LDDGPTAPAKVEV--SSQSDNNTWLSIVIHEGRYRQVRRMCEAVSLSVVRLRRVRYGAVS 214
Query: 142 LPSDLGIGMHVELKQSDL 159
L DL G + L +++
Sbjct: 215 L-GDLKPGEYRPLSPTEV 231
>UNIPROTKB|Q3AAS7 [details] [associations]
symbol:rluB "Pseudouridine synthase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
Gene3D:3.10.290.10 HOGENOM:HOG000044954 eggNOG:COG1187 KO:K06178
TIGRFAMs:TIGR00093 RefSeq:YP_360757.1 STRING:Q3AAS7 GeneID:3728294
KEGG:chy:CHY_1938 PATRIC:21276965 OMA:KLINGNA
BioCyc:CHYD246194:GJCN-1937-MONOMER Uniprot:Q3AAS7
Length = 241
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 43/121 (35%), Positives = 63/121 (52%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G + R+F VGRLD+ T GL+I+TNDGD A A++HP ++ K Y+A + G N+ L +
Sbjct: 90 GKVKERVFPVGRLDMNTEGLLILTNDGDLAMALTHPKHQVPKTYLALVRGTPNRAKLKEL 149
Query: 77 SEGTVIEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
G ++E + P V +HEGR +VR + K G + L R R
Sbjct: 150 ERGVLLEDGYTAPAKVNF--KKPEGKNSWIEITIHEGRKRQVRRMFKKIGHPVLKLIRTR 207
Query: 137 I 137
I
Sbjct: 208 I 208
>TIGR_CMR|CHY_1938 [details] [associations]
symbol:CHY_1938 "ribosomal large subunit pseudouridine
synthase B" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10
HOGENOM:HOG000044954 eggNOG:COG1187 KO:K06178 TIGRFAMs:TIGR00093
RefSeq:YP_360757.1 STRING:Q3AAS7 GeneID:3728294 KEGG:chy:CHY_1938
PATRIC:21276965 OMA:KLINGNA BioCyc:CHYD246194:GJCN-1937-MONOMER
Uniprot:Q3AAS7
Length = 241
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 43/121 (35%), Positives = 63/121 (52%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G + R+F VGRLD+ T GL+I+TNDGD A A++HP ++ K Y+A + G N+ L +
Sbjct: 90 GKVKERVFPVGRLDMNTEGLLILTNDGDLAMALTHPKHQVPKTYLALVRGTPNRAKLKEL 149
Query: 77 SEGTVIEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
G ++E + P V +HEGR +VR + K G + L R R
Sbjct: 150 ERGVLLEDGYTAPAKVNF--KKPEGKNSWIEITIHEGRKRQVRRMFKKIGHPVLKLIRTR 207
Query: 137 I 137
I
Sbjct: 208 I 208
>TIGR_CMR|DET_0789 [details] [associations]
symbol:DET_0789 "pseudouridine synthase, RsuA family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
HOGENOM:HOG000044954 eggNOG:COG1187 KO:K06178 TIGRFAMs:TIGR00093
RefSeq:YP_181521.1 ProteinModelPortal:Q3Z8C8 STRING:Q3Z8C8
GeneID:3229868 KEGG:det:DET0789 PATRIC:21608639 OMA:WQGSNHH
ProtClustDB:CLSK837265 BioCyc:DETH243164:GJNF-790-MONOMER
Uniprot:Q3Z8C8
Length = 249
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 40/120 (33%), Positives = 68/120 (56%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
LF VGRLD TTGL+++TNDG+ ++HPS +++KEY+ +ID A+ + ++ +G ++
Sbjct: 107 LFPVGRLDETTTGLLLLTNDGELTNRLTHPSYEIEKEYLISIDAALTQADKESLEKGMLL 166
Query: 83 EGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ +P L ++HEG+ VR + + G ++ +LKR RI RL
Sbjct: 167 DDGLTSP---ARLSRVTDEPPYNYKLIIHEGKKRIVRRMFAHLGYQIKALKRSRIATLRL 223
>TIGR_CMR|CBU_1059 [details] [associations]
symbol:CBU_1059 "pseudouridine synthase family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0009451 "RNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 HOGENOM:HOG000044954 KO:K06178 OMA:PRGGWIE
TIGRFAMs:TIGR00093 RefSeq:YP_338282.1 ProteinModelPortal:Q4AAX8
PRIDE:Q4AAX8 GeneID:1208960 KEGG:cbu:CBU_1059 PATRIC:17930843
ProtClustDB:CLSK940429 BioCyc:CBUR227377:GJ7S-1051-MONOMER
Uniprot:Q4AAX8
Length = 244
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 48/146 (32%), Positives = 78/146 (53%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R +GRLD+ T+GL++ TN+G+ A + HPS+++++EY + GAV+
Sbjct: 92 PRLKDGRWVIIGRLDINTSGLLLFTNEGELANRLMHPSAQVEREYAVRVLGAVDADMTQK 151
Query: 76 ISEGTVIE-GTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKR 134
++ G +E G D+V++ VV EGR+ VR L ++ G+K+ L R
Sbjct: 152 LAHGVGLEDGKARFEDIVDV---GGDGKNRWFHVVVVEGRHRLVRRLWESQGVKVSRLIR 208
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLK 160
+R G LP L G EL+ ++K
Sbjct: 209 VRFGPIVLPKSLRRGAWKELESPEIK 234
>UNIPROTKB|Q9KSS7 [details] [associations]
symbol:rluB "Ribosomal large subunit pseudouridine synthase
B" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006364 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 Gene3D:3.10.290.10
eggNOG:COG1187 KO:K06178 OMA:PRGGWIE TIGRFAMs:TIGR00093 PIR:H82230
RefSeq:NP_230824.1 ProteinModelPortal:Q9KSS7 DNASU:2614612
GeneID:2614612 KEGG:vch:VC1179 PATRIC:20081448
ProtClustDB:CLSK874246 Uniprot:Q9KSS7
Length = 321
Score = 187 (70.9 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 49/146 (33%), Positives = 75/146 (51%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P + R +VGRLD T+GL++ T DG+ A + HPS ++++EY+ + G V + +
Sbjct: 93 RLPKIRGSRWISVGRLDANTSGLLLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKV 152
Query: 74 IAISEGTVIE-GTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSL 132
+ G +E G DV + V++EGRN EVR L ++ G + L
Sbjct: 153 RNLVRGVQLEDGMARFEDV---MYAGGEGINHTFYVVINEGRNREVRRLWESQGTTVSRL 209
Query: 133 KRLRIGGFRLPSDLGIG--MHVELKQ 156
KR+R G L L G M ++LKQ
Sbjct: 210 KRVRYGDIFLDKKLPRGGWMELDLKQ 235
>TIGR_CMR|VC_1179 [details] [associations]
symbol:VC_1179 "pseudouridine synthase family 1 protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0006364 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GO:GO:0009451 Gene3D:3.10.290.10 eggNOG:COG1187 KO:K06178
OMA:PRGGWIE TIGRFAMs:TIGR00093 PIR:H82230 RefSeq:NP_230824.1
ProteinModelPortal:Q9KSS7 DNASU:2614612 GeneID:2614612
KEGG:vch:VC1179 PATRIC:20081448 ProtClustDB:CLSK874246
Uniprot:Q9KSS7
Length = 321
Score = 187 (70.9 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 49/146 (33%), Positives = 75/146 (51%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P + R +VGRLD T+GL++ T DG+ A + HPS ++++EY+ + G V + +
Sbjct: 93 RLPKIRGSRWISVGRLDANTSGLLLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKV 152
Query: 74 IAISEGTVIE-GTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSL 132
+ G +E G DV + V++EGRN EVR L ++ G + L
Sbjct: 153 RNLVRGVQLEDGMARFEDV---MYAGGEGINHTFYVVINEGRNREVRRLWESQGTTVSRL 209
Query: 133 KRLRIGGFRLPSDLGIG--MHVELKQ 156
KR+R G L L G M ++LKQ
Sbjct: 210 KRVRYGDIFLDKKLPRGGWMELDLKQ 235
>TIGR_CMR|CHY_1531 [details] [associations]
symbol:CHY_1531 "ribosomal small subunit pseudouridine
synthase A" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 HOGENOM:HOG000044954
eggNOG:COG1187 TIGRFAMs:TIGR00093 KO:K06183 RefSeq:YP_360363.1
ProteinModelPortal:Q3ABX1 STRING:Q3ABX1 GeneID:3727658
KEGG:chy:CHY_1531 PATRIC:21276191 OMA:RISMGPL
BioCyc:CHYD246194:GJCN-1530-MONOMER Uniprot:Q3ABX1
Length = 231
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 43/141 (30%), Positives = 72/141 (51%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+I+T+DG A ++ P +++KEY +D + + I G
Sbjct: 92 KIFPVGRLDIDTEGLLILTDDGQLAHHLTSPKKEVEKEYYFELDKPLEEEDFSKIKTGIR 151
Query: 82 IEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E + T LL V+ EG+ H+V+ + G + LKR+RIGG
Sbjct: 152 LEDNYLTKPA-RLLGKVGDKHGTI---VITEGKYHQVKRMFLALGKTVVYLKRIRIGGLI 207
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L + L G + EL ++ ++
Sbjct: 208 LDNKLSPGEYRELTPEEILVL 228
>UNIPROTKB|P37765 [details] [associations]
symbol:rluB "23S rRNA pseudouridine 2605 synthase"
species:83333 "Escherichia coli K-12" [GO:0000455 "enzyme-directed
rRNA pseudouridine synthesis" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;IMP] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 EMBL:M21528 GO:GO:0009982
SUPFAM:SSF55120 Gene3D:3.10.290.10 HOGENOM:HOG000044954
GO:GO:0000455 EMBL:U18111 PIR:H64874 RefSeq:NP_415785.1
RefSeq:YP_489537.1 ProteinModelPortal:P37765 SMR:P37765
DIP:DIP-11585N IntAct:P37765 PRIDE:P37765
EnsemblBacteria:EBESCT00000003179 EnsemblBacteria:EBESCT00000014519
GeneID:12930580 GeneID:945840 KEGG:ecj:Y75_p1243 KEGG:eco:b1269
PATRIC:32117796 EchoBASE:EB2329 EcoGene:EG12433 eggNOG:COG1187
KO:K06178 OMA:PRGGWIE ProtClustDB:PRK10700
BioCyc:EcoCyc:EG12433-MONOMER BioCyc:ECOL316407:JW1261-MONOMER
BioCyc:MetaCyc:EG12433-MONOMER Genevestigator:P37765
TIGRFAMs:TIGR00093 Uniprot:P37765
Length = 291
Score = 178 (67.7 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 49/142 (34%), Positives = 69/142 (48%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLDV T GL++ T DG+ A + HPS ++++EY + G V+ L
Sbjct: 94 RLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKL 153
Query: 74 IAISEGTVIEGTHCTPDVVELLXXXXXXXXXXXXXV-VHEGRNHEVRELVKNAGLKLYSL 132
+S G +E P + + V + EGRN EVR L + G+++ L
Sbjct: 154 RDLSRGVQLEDG---PAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRL 210
Query: 133 KRLRIGGFRLPSDLGIGMHVEL 154
R+R G LP L G EL
Sbjct: 211 IRVRYGDIPLPKGLPRGGWTEL 232
>UNIPROTKB|P65842 [details] [associations]
symbol:MT1751.1 "Uncharacterized RNA pseudouridine synthase
Rv1711/MT1751.1" species:1773 "Mycobacterium tuberculosis"
[GO:0040007 "growth" evidence=IMP] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842577
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 HOGENOM:HOG000044954 eggNOG:COG1187 KO:K06178
TIGRFAMs:TIGR00093 PIR:F70504 RefSeq:NP_216227.1 RefSeq:NP_336208.1
RefSeq:YP_006515106.1 ProteinModelPortal:P65842 SMR:P65842
PRIDE:P65842 EnsemblBacteria:EBMYCT00000000216
EnsemblBacteria:EBMYCT00000070097 GeneID:13316496 GeneID:885122
GeneID:923953 KEGG:mtc:MT1751.1 KEGG:mtu:Rv1711 KEGG:mtv:RVBD_1711
PATRIC:18125604 TubercuList:Rv1711 OMA:CEDLIFR
ProtClustDB:CLSK791343 Uniprot:P65842
Length = 254
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 41/121 (33%), Positives = 61/121 (50%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+LF VGRLD T GL+++TNDG+ A + HPS ++ K Y+AT+ G+V + + G
Sbjct: 111 KLFHVGRLDADTEGLMLLTNDGELAHRLMHPSHEVPKTYLATVTGSVPRGLGRTLRAGIE 170
Query: 82 IEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ D + +HEGRN VR L+ AG + +L R IG
Sbjct: 171 LDDGPAFVD--DFAVVDAIPGKTLVRVTLHEGRNRIVRRLLAAAGFPVEALVRTDIGAVS 228
Query: 142 L 142
L
Sbjct: 229 L 229
>TIGR_CMR|CPS_3519 [details] [associations]
symbol:CPS_3519 "ribosomal large subunit pseudouridine
synthase B" species:167879 "Colwellia psychrerythraea 34H"
[GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 Gene3D:3.10.290.10
HOGENOM:HOG000044954 eggNOG:COG1187 KO:K06178 TIGRFAMs:TIGR00093
OMA:NFKEIKF RefSeq:YP_270193.1 ProteinModelPortal:Q47YC7
STRING:Q47YC7 GeneID:3520481 KEGG:cps:CPS_3519 PATRIC:21469975
BioCyc:CPSY167879:GI48-3547-MONOMER Uniprot:Q47YC7
Length = 355
Score = 172 (65.6 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 43/141 (30%), Positives = 69/141 (48%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLD+ T+G+++ T DG+ A + HPS K+++EY + G +N+ L
Sbjct: 160 RLPPLDAGRWVAVGRLDINTSGMLLFTTDGELANRLMHPSQKVEREYAVRVFGEINEAML 219
Query: 74 IAISEGTVIEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G +E ++ V+ EGRN EVR L ++ +++ L
Sbjct: 220 QTLRAGVKLEDGMAR--FQKITYRGGEGRNHWFHVVLSEGRNREVRRLWESQDVQVSRLI 277
Query: 134 RLRIGGFRLPSDLGIGMHVEL 154
R+R G + L +G EL
Sbjct: 278 RVRYGDMEMQRQLPMGGWREL 298
>UNIPROTKB|P0AA43 [details] [associations]
symbol:rsuA "16S rRNA pseudouridine 516 synthase"
species:83333 "Escherichia coli K-12" [GO:0000455 "enzyme-directed
rRNA pseudouridine synthesis" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR000748 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR018496 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01149 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 EMBL:U00008 GO:GO:0009982 SUPFAM:SSF55120
Gene3D:3.10.290.10 HOGENOM:HOG000044954 GO:GO:0000455
eggNOG:COG1187 TIGRFAMs:TIGR00093 PIR:F64987 RefSeq:NP_416688.1
RefSeq:YP_490423.1 PDB:1KSK PDB:1KSL PDB:1KSV PDBsum:1KSK
PDBsum:1KSL PDBsum:1KSV ProteinModelPortal:P0AA43 SMR:P0AA43
DIP:DIP-35902N IntAct:P0AA43 MINT:MINT-1221744 SWISS-2DPAGE:P0AA43
PRIDE:P0AA43 EnsemblBacteria:EBESCT00000000852
EnsemblBacteria:EBESCT00000016577 GeneID:12931480 GeneID:945378
KEGG:ecj:Y75_p2146 KEGG:eco:b2183 PATRIC:32119721 EchoBASE:EB1978
EcoGene:EG12044 KO:K06183 OMA:IGPRFIM ProtClustDB:PRK10839
BioCyc:EcoCyc:EG12044-MONOMER BioCyc:ECOL316407:JW2171-MONOMER
BioCyc:MetaCyc:EG12044-MONOMER EvolutionaryTrace:P0AA43
Genevestigator:P0AA43 Uniprot:P0AA43
Length = 231
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 39/140 (27%), Positives = 69/140 (49%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L GRLD+ TTGL+++T+DG ++ ++ P +K Y+ T++ V ++G
Sbjct: 94 KLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQ 153
Query: 82 I--EGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ E P V+E++ + EGR H+V+ + G + L R RIGG
Sbjct: 154 LHNEKDLTKPAVLEVITPTQVRLT------ISEGRYHQVKRMFAAVGNHVVELHRERIGG 207
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L +DL G + L + ++
Sbjct: 208 ITLDADLAPGEYRPLTEEEI 227
>TIGR_CMR|CPS_0916 [details] [associations]
symbol:CPS_0916 "RNA pseudouridine synthase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 HOGENOM:HOG000044954
eggNOG:COG1187 TIGRFAMs:TIGR00093 KO:K06182 RefSeq:YP_267665.1
ProteinModelPortal:Q487V0 SMR:Q487V0 STRING:Q487V0 GeneID:3522181
KEGG:cps:CPS_0916 PATRIC:21465115 OMA:IDAIGHK
ProtClustDB:CLSK768214 BioCyc:CPSY167879:GI48-1002-MONOMER
Uniprot:Q487V0
Length = 314
Score = 161 (61.7 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 41/140 (29%), Positives = 70/140 (50%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F +GRLD + GLI +T+DGD + + KEYI T+D +++R + +S G
Sbjct: 105 KKRIFPIGRLDKPSEGLIFLTSDGDIVNKILRAENAHDKEYIVTVDKPISERFIERMSRG 164
Query: 80 TVIEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I GT P +V++ ++ +G N ++R + + ++ LKR RI
Sbjct: 165 VPILGTITKPCIVQV------KSRFEFTIILTQGLNRQIRRMCEYLDYEVLKLKRSRIMK 218
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L DL G EL +++
Sbjct: 219 VEL-GDLTPGQWRELTITEM 237
>TIGR_CMR|SPO_2984 [details] [associations]
symbol:SPO_2984 "RNA pseudouridine synthase family
protein" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009451 "RNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
HOGENOM:HOG000044954 KO:K06178 TIGRFAMs:TIGR00093
RefSeq:YP_168190.1 ProteinModelPortal:Q5LP66 GeneID:3195842
KEGG:sil:SPO2984 PATRIC:23379403 OMA:LKRGAWL ProtClustDB:CLSK934016
Uniprot:Q5LP66
Length = 387
Score = 156 (60.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 40/140 (28%), Positives = 69/140 (49%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
PR+ +VGRLD+ + GL+++TNDG + + PS+ + Y I G + +G
Sbjct: 101 PRVMSVGRLDLNSEGLLLLTNDGAVKRQLELPSTGWLRRYRVRIKGTPKDEDFAPLRQGL 160
Query: 81 VIEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
VIEG P +V + + EG+N E+R +++ G + L R+ G F
Sbjct: 161 VIEGERFQPMIVSI--DRQQGANAWLTVGLREGKNREIRRAIEDIGFIVNRLIRISYGPF 218
Query: 141 RLPSDLGIGMHVELKQSDLK 160
+L + L G E+++ L+
Sbjct: 219 QLGT-LAPGKVEEVRRRVLR 237
>UNIPROTKB|Q9KRK5 [details] [associations]
symbol:rsuA "Ribosomal small subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG1187
TIGRFAMs:TIGR00093 KO:K06183 PIR:A82176 RefSeq:NP_231272.1
ProteinModelPortal:Q9KRK5 SMR:Q9KRK5 DNASU:2613890 GeneID:2613890
KEGG:vch:VC1635 PATRIC:20082334 OMA:YTHRVIS ProtClustDB:CLSK874466
Uniprot:Q9KRK5
Length = 231
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 40/145 (27%), Positives = 67/145 (46%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
L GRLDV TTGL+++T+DG ++ V+ P K +K Y + + + + G +
Sbjct: 94 LHFAGRLDVDTTGLLLITDDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIEL 153
Query: 83 EGTH--CTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
G P +E++ +HEG+ H+V+ + G K+ L R RIG
Sbjct: 154 RGERELTLPAQLEVISETEVLLT------IHEGKYHQVKRMFAALGNKVIGLHRERIGQI 207
Query: 141 RLPSDLGIGMHVELKQSDLKLMGWK 165
L L G + L + ++ + WK
Sbjct: 208 TLDETLEPGEYRYLTEEEVASI-WK 231
>TIGR_CMR|VC_1635 [details] [associations]
symbol:VC_1635 "ribosomal small subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG1187
TIGRFAMs:TIGR00093 KO:K06183 PIR:A82176 RefSeq:NP_231272.1
ProteinModelPortal:Q9KRK5 SMR:Q9KRK5 DNASU:2613890 GeneID:2613890
KEGG:vch:VC1635 PATRIC:20082334 OMA:YTHRVIS ProtClustDB:CLSK874466
Uniprot:Q9KRK5
Length = 231
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 40/145 (27%), Positives = 67/145 (46%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
L GRLDV TTGL+++T+DG ++ V+ P K +K Y + + + + G +
Sbjct: 94 LHFAGRLDVDTTGLLLITDDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIEL 153
Query: 83 EGTH--CTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
G P +E++ +HEG+ H+V+ + G K+ L R RIG
Sbjct: 154 RGERELTLPAQLEVISETEVLLT------IHEGKYHQVKRMFAALGNKVIGLHRERIGQI 207
Query: 141 RLPSDLGIGMHVELKQSDLKLMGWK 165
L L G + L + ++ + WK
Sbjct: 208 TLDETLEPGEYRYLTEEEVASI-WK 231
>TIGR_CMR|CPS_2898 [details] [associations]
symbol:CPS_2898 "ribosomal large subunit pseudouridine
synthase E" species:167879 "Colwellia psychrerythraea 34H"
[GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01149 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG1187 TIGRFAMs:TIGR00093
HOGENOM:HOG000044955 KO:K06181 RefSeq:YP_269599.1
ProteinModelPortal:Q480C0 SMR:Q480C0 STRING:Q480C0 GeneID:3520390
KEGG:cps:CPS_2898 PATRIC:21468821 OMA:MIVLFNK
BioCyc:CPSY167879:GI48-2948-MONOMER Uniprot:Q480C0
Length = 201
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 36/134 (26%), Positives = 60/134 (44%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
P ++ GRLD + GL+++TNDG +++P K +K Y I+GA +++ L + +G
Sbjct: 56 PGIYAAGRLDRDSEGLLLLTNDGKLQHQIANPVKKTEKTYWVQIEGAPSEQDLAKLRQGV 115
Query: 81 VIEGTHCTPDVVELLXX------------XXXXXXXXXXXVVHEGRNHEVRELVKNAGLK 128
++ P V ++ + EGRN +VR + N G
Sbjct: 116 ELKDGMTKPAKVAIMLEPNVWPRNPPIRERASIPTTWLEITITEGRNRQVRRMTANIGFP 175
Query: 129 LYSLKRLRIGGFRL 142
L R RIG + L
Sbjct: 176 TLRLIRYRIGNWTL 189
>DICTYBASE|DDB_G0276449 [details] [associations]
symbol:DDB_G0276449 "Ribosomal large subunit
pseudouridine synthase B" species:44689 "Dictyostelium discoideum"
[GO:0016866 "intramolecular transferase activity" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 dictyBase:DDB_G0276449 GO:GO:0003723
EMBL:AAFI02000015 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 eggNOG:COG1187 TIGRFAMs:TIGR00093
RefSeq:XP_643151.1 ProteinModelPortal:Q8T866 STRING:Q8T866
EnsemblProtists:DDB0167086 GeneID:8620558 KEGG:ddi:DDB_G0276449
InParanoid:Q8T866 OMA:VGRLDYY ProtClustDB:CLSZ2430897
Uniprot:Q8T866
Length = 401
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 39/136 (28%), Positives = 65/136 (47%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
L +VGRLD T GLI+ TNDG+ A+ ++ P + + Y I G ++++G VI
Sbjct: 233 LISVGRLDYYTEGLILFTNDGELARYLTLPQNLFFRVYKVRIFGKFTDEMKFSLAKGMVI 292
Query: 83 EGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
P V++ + EG+ E+R L++ +K+ L R+ G + L
Sbjct: 293 NEVFYRPVSVQV--ESETDSNTWLRITLQEGKKREIRTLLEYFNVKVLRLIRVAYGPYVL 350
Query: 143 PSDLGIGMHVELKQSD 158
P+ L G +E+ D
Sbjct: 351 PNSLKHGETIEVPIKD 366
>UNIPROTKB|Q9KPY9 [details] [associations]
symbol:VC_2223 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451
Gene3D:3.10.290.10 TIGRFAMs:TIGR00093 KO:K06182 OMA:MNVSLKG
HSSP:P45124 PIR:C82103 RefSeq:NP_231854.1 ProteinModelPortal:Q9KPY9
SMR:Q9KPY9 DNASU:2613263 GeneID:2613263 KEGG:vch:VC2223
PATRIC:20083493 ProtClustDB:CLSK874723 Uniprot:Q9KPY9
Length = 340
Score = 144 (55.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F +GRLD + GLI +TNDGD + + +KEY+ +D + + +S G
Sbjct: 109 RIFPIGRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVN 168
Query: 82 IEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
I D V L V+ +G N ++R + + G +++ L+R+RI
Sbjct: 169 IL------DTVTLPCKVTQETQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRI 218
>TIGR_CMR|VC_2223 [details] [associations]
symbol:VC_2223 "pseudouridine synthase family 1 protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451
Gene3D:3.10.290.10 TIGRFAMs:TIGR00093 KO:K06182 OMA:MNVSLKG
HSSP:P45124 PIR:C82103 RefSeq:NP_231854.1 ProteinModelPortal:Q9KPY9
SMR:Q9KPY9 DNASU:2613263 GeneID:2613263 KEGG:vch:VC2223
PATRIC:20083493 ProtClustDB:CLSK874723 Uniprot:Q9KPY9
Length = 340
Score = 144 (55.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F +GRLD + GLI +TNDGD + + +KEY+ +D + + +S G
Sbjct: 109 RIFPIGRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVN 168
Query: 82 IEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
I D V L V+ +G N ++R + + G +++ L+R+RI
Sbjct: 169 IL------DTVTLPCKVTQETQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRI 218
>UNIPROTKB|P32684 [details] [associations]
symbol:rluF "23S rRNA pseudouridine 2604 synthase"
species:83333 "Escherichia coli K-12" [GO:0000455 "enzyme-directed
rRNA pseudouridine synthesis" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;IMP] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 EMBL:U00006 GO:GO:0009982
SUPFAM:SSF55120 Gene3D:3.10.290.10 HOGENOM:HOG000044954
GO:GO:0000455 eggNOG:COG1187 TIGRFAMs:TIGR00093 PIR:E65209
RefSeq:NP_418446.1 RefSeq:YP_492165.1 PDB:2GML PDB:3DH3 PDBsum:2GML
PDBsum:3DH3 ProteinModelPortal:P32684 SMR:P32684 IntAct:P32684
PRIDE:P32684 EnsemblBacteria:EBESCT00000003844
EnsemblBacteria:EBESCT00000016624 GeneID:12932783 GeneID:948519
KEGG:ecj:Y75_p3909 KEGG:eco:b4022 PATRIC:32123573 EchoBASE:EB1865
EcoGene:EG11921 KO:K06182 OMA:MNVSLKG ProtClustDB:PRK10475
BioCyc:EcoCyc:EG11921-MONOMER BioCyc:ECOL316407:JW3982-MONOMER
BioCyc:MetaCyc:EG11921-MONOMER EvolutionaryTrace:P32684
Genevestigator:P32684 Uniprot:P32684
Length = 290
Score = 138 (53.6 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 38/138 (27%), Positives = 66/138 (47%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F +GRLD + GLI +TN GD + + +KEY+ T+D + + + +S G
Sbjct: 99 RVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVP 158
Query: 82 IEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I GT V + +V +G N ++R + ++ G ++ L+R RI
Sbjct: 159 ILGT-----VTKKCKVKKEAPFVFRITLV-QGLNRQIRRMCEHFGYEVKKLERTRIMNVS 212
Query: 142 LPSDLGIGMHVELKQSDL 159
L S + +G +L +L
Sbjct: 213 L-SGIPLGEWRDLTDDEL 229
>UNIPROTKB|Q0C148 [details] [associations]
symbol:HNE_1844 "Ribosomal large subunit pseudouridine
synthase F" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0001522 "pseudouridine synthesis" evidence=ISS] [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG1187
TIGRFAMs:TIGR00093 KO:K06182 RefSeq:YP_760545.1
ProteinModelPortal:Q0C148 STRING:Q0C148 GeneID:4290133
KEGG:hne:HNE_1844 PATRIC:32216519 HOGENOM:HOG000044956 OMA:TEANRIG
ProtClustDB:CLSK890111 BioCyc:HNEP228405:GI69-1870-MONOMER
Uniprot:Q0C148
Length = 372
Score = 140 (54.3 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++ +GRLD + GL+I++ DG A+A+ P S + KEY+ + G + + + G
Sbjct: 117 KMAPLGRLDKDSHGLLILSEDGVLAKAIIGPLSDMDKEYLVKVRGDITTAKVALLRHGLE 176
Query: 82 IEGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
++G P V V+ EGRN ++R + + L++ L+R+R+G
Sbjct: 177 LDGRQLRPAEV------TQERGQVLRFVLKEGRNRQIRRMCELVELRVLDLQRIRVG 227
>TIGR_CMR|CPS_4413 [details] [associations]
symbol:CPS_4413 "putative ribosomal small subunit
pseudouridine synthase A" species:167879 "Colwellia psychrerythraea
34H" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
HOGENOM:HOG000044954 eggNOG:COG1187 TIGRFAMs:TIGR00093 KO:K06183
RefSeq:YP_271062.1 STRING:Q47VW0 GeneID:3520669 KEGG:cps:CPS_4413
PATRIC:21471667 OMA:PHHEVRE BioCyc:CPSY167879:GI48-4422-MONOMER
Uniprot:Q47VW0
Length = 240
Score = 135 (52.6 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 36/139 (25%), Positives = 67/139 (48%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
L VGRLD+ T+GL+++TND +++ ++ P K+ K Y T++ A+ ++ A ++G
Sbjct: 103 LHIVGRLDLNTSGLVLLTNDSRWSERLTSPEHKVSKGYQVTLENALTTDYIDAFAKGMYF 162
Query: 83 EGTHCT--PDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+ T P ++ ++ EGR H+++ + + +L R IG
Sbjct: 163 PYENITTKPAILHIVSLFEAQVSLT------EGRYHQIKRMFGRFRNPVIALHRYSIGSL 216
Query: 141 RLPSDLGIGMHVELKQSDL 159
RL L G L S++
Sbjct: 217 RLDESLKDGESRVLNVSEV 235
>TIGR_CMR|CJE_1878 [details] [associations]
symbol:CJE_1878 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 HOGENOM:HOG000044954
eggNOG:COG1187 KO:K06178 TIGRFAMs:TIGR00093 RefSeq:YP_179848.1
ProteinModelPortal:Q5HS87 STRING:Q5HS87 GeneID:3230637
KEGG:cjr:CJE1878 PATRIC:20045586 OMA:DVEAWIS ProtClustDB:CLSK872558
BioCyc:CJEJ195099:GJC0-1917-MONOMER Uniprot:Q5HS87
Length = 253
Score = 131 (51.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 43/154 (27%), Positives = 71/154 (46%)
Query: 21 PRLFT----VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
PR F+ VGRLD A+ GL+++T+ A A+ H S L++EY + G V+K+ + A+
Sbjct: 88 PRQFSTWLSVGRLDYASEGLLLLTDSPVIADALMH--SDLEREYYLKVKGTVSKQVIEAM 145
Query: 77 SEGTVIE----GTHCTPDV--------VELLXXXXXXXXXXXXXVVHEGRNHEVRELVKN 124
G I+ G H + ++ V++EG+N E+R +
Sbjct: 146 QNGLEIKNEKKGAHAKTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGH 205
Query: 125 AGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSD 158
L++ LKR+ G L L G H L+ +
Sbjct: 206 FDLEVMDLKRVAFGALDLGM-LKAGKHRYLENGE 238
>DICTYBASE|DDB_G0282961 [details] [associations]
symbol:DDB_G0282961 species:44689 "Dictyostelium
discoideum" [GO:0016866 "intramolecular transferase activity"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 SMART:SM00363
dictyBase:DDB_G0282961 GO:GO:0003723 EMBL:AAFI02000049
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG1187 TIGRFAMs:TIGR00093 RefSeq:XP_639281.1
ProteinModelPortal:Q54RS0 STRING:Q54RS0 EnsemblProtists:DDB0185286
GeneID:8623849 KEGG:ddi:DDB_G0282961 OMA:EIHRTRI Uniprot:Q54RS0
Length = 571
Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 38/145 (26%), Positives = 62/145 (42%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSK-LQKEYIATIDGAVNKRHLIAISE 78
+P L GRLD TGL++++ DG + P K+Y + +
Sbjct: 101 KPTLSIAGRLDKWVTGLVVLSQDGKLVDRIISPKDDGCGKDYEVVLKDKLVGDEAEVFES 160
Query: 79 GTVI---EGTHCTPDVVELLXXXXXXXXXXXXXVVHEGRNHEVRELVKNAGLKLYSLKRL 135
G ++ E T C P +++L ++EGR H++R + + K + R
Sbjct: 161 GKIMLRGESTPCKPAKLQVLDKEKNKVKVT----LYEGRYHQIRRMFASTENKAVEIHRT 216
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLK 160
RIG L DLG+G L + +LK
Sbjct: 217 RIGPVEL-GDLGLGKWRHLTEQELK 240
>UNIPROTKB|Q9F855 [details] [associations]
symbol:rluE "Ribosomal large subunit pseudouridine synthase
E" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] InterPro:IPR000748
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01149 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006364 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG1187
TIGRFAMs:TIGR00093 KO:K06181 EMBL:AF261151 PIR:A82236
RefSeq:NP_230785.1 ProteinModelPortal:Q9F855 SMR:Q9F855
DNASU:2614410 GeneID:2614410 KEGG:vch:VC1140 PATRIC:20081372
OMA:KHKLAKT ProtClustDB:CLSK2392340 Uniprot:Q9F855
Length = 241
Score = 121 (47.7 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 37/144 (25%), Positives = 61/144 (42%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+P ++ GRLD + GL+I+TNDG ++ P SK K Y ++G+ + L A+
Sbjct: 92 IPIKDVYAAGRLDRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALR 151
Query: 78 EGTVIEGTHCTPDVVELL------------XXXXXXXXXXXXXVVHEGRNHEVRELVKNA 125
G ++ P V+++ + EGRN +VR + +
Sbjct: 152 HGVTLKDGPTLPAKVDIMPEPTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHI 211
Query: 126 GLKLYSLKRLRIGGFRLPSDLGIG 149
G L R +G + L DL G
Sbjct: 212 GFPTLRLIRYSMGDWNL-GDLQPG 234
>TIGR_CMR|VC_1140 [details] [associations]
symbol:VC_1140 "pseudouridine synthase family 1 protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR000748 InterPro:IPR006145
InterPro:IPR018496 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01149
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451
eggNOG:COG1187 TIGRFAMs:TIGR00093 KO:K06181 EMBL:AF261151
PIR:A82236 RefSeq:NP_230785.1 ProteinModelPortal:Q9F855 SMR:Q9F855
DNASU:2614410 GeneID:2614410 KEGG:vch:VC1140 PATRIC:20081372
OMA:KHKLAKT ProtClustDB:CLSK2392340 Uniprot:Q9F855
Length = 241
Score = 121 (47.7 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 37/144 (25%), Positives = 61/144 (42%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+P ++ GRLD + GL+I+TNDG ++ P SK K Y ++G+ + L A+
Sbjct: 92 IPIKDVYAAGRLDRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALR 151
Query: 78 EGTVIEGTHCTPDVVELL------------XXXXXXXXXXXXXVVHEGRNHEVRELVKNA 125
G ++ P V+++ + EGRN +VR + +
Sbjct: 152 HGVTLKDGPTLPAKVDIMPEPTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHI 211
Query: 126 GLKLYSLKRLRIGGFRLPSDLGIG 149
G L R +G + L DL G
Sbjct: 212 GFPTLRLIRYSMGDWNL-GDLQPG 234
>TIGR_CMR|CPS_2136 [details] [associations]
symbol:CPS_2136 "ribosomal small subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR000748
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR018496
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 HOGENOM:HOG000044954
eggNOG:COG1187 TIGRFAMs:TIGR00093 KO:K06183 RefSeq:YP_268861.1
ProteinModelPortal:Q483A6 STRING:Q483A6 GeneID:3521381
KEGG:cps:CPS_2136 PATRIC:21467389 OMA:DLHIVGR
BioCyc:CPSY167879:GI48-2206-MONOMER Uniprot:Q483A6
Length = 243
Score = 117 (46.2 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 39/147 (26%), Positives = 66/147 (44%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI----SE 78
L GRLD TTGL+++T+DG ++ V P + QK Y + ++ L A+
Sbjct: 94 LHIAGRLDADTTGLVLITDDGRWSHNVISPKKQCQKTYRVWLRSEIDDDKLSALVARFDS 153
Query: 79 GTVIEGTHCT--PDV---VELLXXXXXXXXXXXXXV-VHEGRNHEVRELVKNAGLKLYSL 132
G ++G P + VE+ + + EG+ H+V+ + G ++ L
Sbjct: 154 GLQLQGEDSLTRPAILTRVEIDNLVDEASYRSEVLLTITEGKYHQVKRMFAAVGNRVVGL 213
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDL 159
R +IG L DL G EL + ++
Sbjct: 214 HREQIGKITL-GDLAPGEWRELTEDEI 239
>GENEDB_PFALCIPARUM|PFB0890c [details] [associations]
symbol:PFB0890c "pseudouridine synthetase,
putative" species:5833 "Plasmodium falciparum" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0020011 "apicoplast" evidence=ISS]
InterPro:IPR000748 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR018496 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01149 PROSITE:PS50889 SMART:SM00363 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AE001362
GO:GO:0020011 Gene3D:3.10.290.10 TIGRFAMs:TIGR00093 OMA:CEDLIFR
PIR:C71603 RefSeq:XP_001349696.1 HSSP:P45124
ProteinModelPortal:O96270 EnsemblProtists:PFB0890c:mRNA
GeneID:812778 KEGG:pfa:PFB0890c EuPathDB:PlasmoDB:PF3D7_0219500
HOGENOM:HOG000284297 KO:K01718 ProtClustDB:CLSZ2432279
Uniprot:O96270
Length = 338
Score = 105 (42.0 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L + RL TVGRLD T+G++++TND + ++HP + + Y I+G V L ++
Sbjct: 150 LQKYRLVTVGRLDRNTSGVLLLTNDYAWVNKLTHPKYQRIRTYRVHIEGPVKMNALKELA 209
Query: 78 EGTVIE 83
G +E
Sbjct: 210 RGIYLE 215
Score = 52 (23.4 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 110 VHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQ---SDLKL 161
+ EGRN ++R++ + + +KR L + + EL Q +DLKL
Sbjct: 281 IKEGRNRQIRKMFQQINQPVIKIKRTSFENITLKNIYFPKQYRELNQKEVNDLKL 335
>UNIPROTKB|O96270 [details] [associations]
symbol:PFB0890c "Pseudouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000748 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR018496 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01149 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AE001362 GO:GO:0020011 Gene3D:3.10.290.10
TIGRFAMs:TIGR00093 OMA:CEDLIFR PIR:C71603 RefSeq:XP_001349696.1
HSSP:P45124 ProteinModelPortal:O96270 EnsemblProtists:PFB0890c:mRNA
GeneID:812778 KEGG:pfa:PFB0890c EuPathDB:PlasmoDB:PF3D7_0219500
HOGENOM:HOG000284297 KO:K01718 ProtClustDB:CLSZ2432279
Uniprot:O96270
Length = 338
Score = 105 (42.0 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L + RL TVGRLD T+G++++TND + ++HP + + Y I+G V L ++
Sbjct: 150 LQKYRLVTVGRLDRNTSGVLLLTNDYAWVNKLTHPKYQRIRTYRVHIEGPVKMNALKELA 209
Query: 78 EGTVIE 83
G +E
Sbjct: 210 RGIYLE 215
Score = 52 (23.4 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 110 VHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQ---SDLKL 161
+ EGRN ++R++ + + +KR L + + EL Q +DLKL
Sbjct: 281 IKEGRNRQIRKMFQQINQPVIKIKRTSFENITLKNIYFPKQYRELNQKEVNDLKL 335
>TIGR_CMR|SPO_2124 [details] [associations]
symbol:SPO_2124 "RNA pseudouridine synthase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0001522 "pseudouridine
synthesis" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR000748 InterPro:IPR006145
InterPro:IPR018496 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01149
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00093
HOGENOM:HOG000044955 KO:K06181 OMA:TWIELSI RefSeq:YP_167352.1
ProteinModelPortal:Q5LRK3 SMR:Q5LRK3 GeneID:3192861
KEGG:sil:SPO2124 PATRIC:23377591 ProtClustDB:CLSK751573
Uniprot:Q5LRK3
Length = 200
Score = 91 (37.1 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
P ++ GRLD + GL+++T+ G ++ P KL K Y ++G + L A++EG
Sbjct: 37 PGVYPAGRLDRDSEGLMLLTDVGRLQARIADPRHKLAKTYWVQVEGVPDAAALRALAEGV 96
Query: 81 VIE 83
++
Sbjct: 97 ELK 99
Score = 57 (25.1 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 110 VHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ EGRN +VR + G L R RIG + L
Sbjct: 139 IREGRNRQVRRMTAAVGHPTLRLIRARIGDWTL 171
>UNIPROTKB|P75966 [details] [associations]
symbol:rluE "23S rRNA pseudouridine 2457 synthase"
species:83333 "Escherichia coli K-12" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000455 "enzyme-directed rRNA pseudouridine
synthesis" evidence=IMP] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;IMP] InterPro:IPR000748 InterPro:IPR006145
InterPro:IPR018496 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01149
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0000455 eggNOG:COG1187 TIGRFAMs:TIGR00093 PIR:D64858
RefSeq:NP_415653.4 RefSeq:YP_489403.1 PDB:2OLW PDB:2OML PDBsum:2OLW
PDBsum:2OML ProteinModelPortal:P75966 SMR:P75966 DIP:DIP-12716N
IntAct:P75966 PRIDE:P75966 EnsemblBacteria:EBESCT00000002336
EnsemblBacteria:EBESCT00000015729 GeneID:12934133 GeneID:945701
KEGG:ecj:Y75_p1105 KEGG:eco:b1135 PATRIC:32117519 EchoBASE:EB3221
EcoGene:EG13447 HOGENOM:HOG000044955 KO:K06181 OMA:TWIELSI
ProtClustDB:PRK11394 BioCyc:EcoCyc:G6581-MONOMER
BioCyc:ECOL316407:JW1121-MONOMER BioCyc:MetaCyc:G6581-MONOMER
EvolutionaryTrace:P75966 Genevestigator:P75966 Uniprot:P75966
Length = 217
Score = 103 (41.3 bits), Expect = 0.00027, P = 0.00027
Identities = 31/138 (22%), Positives = 55/138 (39%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+P ++ GRLD + GL+++TN+G ++ P + K Y ++G + L A+
Sbjct: 67 IPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALR 126
Query: 78 EGTVIEGTHCTPDVVEL-------------LXXXXXXXXXXXXXVVHEGRNHEVRELVKN 124
G + P EL + ++EGRN +VR + +
Sbjct: 127 NGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAH 186
Query: 125 AGLKLYSLKRLRIGGFRL 142
G L R +G + L
Sbjct: 187 VGFPTLRLIRYAMGDYSL 204
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.139 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 166 153 0.00081 105 3 11 22 0.49 31
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 591 (63 KB)
Total size of DFA: 141 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.72u 0.11s 13.83t Elapsed: 00:00:01
Total cpu time: 13.72u 0.11s 13.83t Elapsed: 00:00:01
Start: Fri May 10 09:15:54 2013 End: Fri May 10 09:15:55 2013