BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031054
(166 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296085982|emb|CBI31423.3| unnamed protein product [Vitis vinifera]
Length = 296
Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/166 (82%), Positives = 155/166 (93%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ LFDDYLKSW+K+NPG+P+PR+FTVGRLDVATTGLII+TNDGDFAQ +SHPSSKL KEY
Sbjct: 131 LCLFDDYLKSWNKQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEY 190
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
IATIDG VNKRHLIAISEGTVIEG HCTPD VELLPPQP+I +PR+R+VVHEGRNHEVRE
Sbjct: 191 IATIDGVVNKRHLIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRE 250
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
LVK+AGL+++SLKR+RIGGFRLPSDLG G HVELKQ DLK +GWKS
Sbjct: 251 LVKSAGLQIHSLKRIRIGGFRLPSDLGHGKHVELKQGDLKALGWKS 296
>gi|225448976|ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464
isoform 1 [Vitis vinifera]
Length = 393
Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 137/166 (82%), Positives = 155/166 (93%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ LFDDYLKSW+K+NPG+P+PR+FTVGRLDVATTGLII+TNDGDFAQ +SHPSSKL KEY
Sbjct: 228 LCLFDDYLKSWNKQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEY 287
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
IATIDG VNKRHLIAISEGTVIEG HCTPD VELLPPQP+I +PR+R+VVHEGRNHEVRE
Sbjct: 288 IATIDGVVNKRHLIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRE 347
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
LVK+AGL+++SLKR+RIGGFRLPSDLG G HVELKQ DLK +GWKS
Sbjct: 348 LVKSAGLQIHSLKRIRIGGFRLPSDLGHGKHVELKQGDLKALGWKS 393
>gi|224100741|ref|XP_002311995.1| predicted protein [Populus trichocarpa]
gi|222851815|gb|EEE89362.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/165 (80%), Positives = 148/165 (89%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
M L DDY +SWDKRNPGLP+PRLFTVGRLDVATTGLIIVTNDGDFAQ ++HPSS L KEY
Sbjct: 232 MCLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEY 291
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
IAT+DG V+KRHL A+SEGTVIEG C PD VELLP QPD PRPR+RIVVHEGRNHEVRE
Sbjct: 292 IATVDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVRE 351
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWK 165
LVKNAGL+++SLKR+RIGGFRLPSDLG+G H ELKQ+DLK +GWK
Sbjct: 352 LVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDLKTLGWK 396
>gi|297823807|ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325625|gb|EFH56045.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 412
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/166 (78%), Positives = 150/166 (90%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLFD+YL SWDKRNPG P+PRLFTVGRLDVATTGLI+VTNDGDFAQ +SHPSS L KEY
Sbjct: 247 ISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEY 306
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
I T+ G ++KRHL+AISEGT++EG HC PD VEL+P Q DIPR R+RIVVHEGRNHEVRE
Sbjct: 307 ITTVVGDIHKRHLMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRE 366
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
LVKNAGL+++SLKR+RIGGFRLPSDLG+G HVELKQS+LK MGWK+
Sbjct: 367 LVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAMGWKN 412
>gi|449444626|ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
[Cucumis sativus]
gi|449490423|ref|XP_004158601.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
[Cucumis sativus]
Length = 398
Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 132/166 (79%), Positives = 149/166 (89%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLFDDYLKSWDK PG P+PRLFTVGRLDVATTGLIIVTNDGDFAQ +SHPSS L KEY
Sbjct: 233 ISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEY 292
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
IA IDG V+K++LIAISEGT+I+G HCTPD VELLP QPDI + R+RIVVHEGRNHEVRE
Sbjct: 293 IAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRE 352
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
LVK AGL++YSLKR+RIGGFRLPSDLG+G + ELKQS+LK +GWKS
Sbjct: 353 LVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398
>gi|30687794|ref|NP_181447.2| suppressor of variegation1 causing pseudouridine synthase-like
protein [Arabidopsis thaliana]
gi|21617894|gb|AAM66944.1| unknown [Arabidopsis thaliana]
gi|26450440|dbj|BAC42334.1| unknown protein [Arabidopsis thaliana]
gi|330254545|gb|AEC09639.1| suppressor of variegation1 causing pseudouridine synthase-like
protein [Arabidopsis thaliana]
Length = 410
Score = 278 bits (710), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 129/166 (77%), Positives = 150/166 (90%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLFD+YL SWDKRNPG P+PRLFTVGRLDVATTGLI+VTNDGDFAQ +SHPSS L KEY
Sbjct: 245 ISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEY 304
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
I T+ G ++KRHL+AISEGT++EG HC PD VEL+P Q DIPR R+RIVVHEGRNHEVRE
Sbjct: 305 ITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRE 364
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
LVKNAGL+++SLKR+RIGGFRLPSDLG+G HVELKQS+LK +GWK+
Sbjct: 365 LVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410
>gi|359486558|ref|XP_003633453.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464
isoform 2 [Vitis vinifera]
Length = 335
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 128/155 (82%), Positives = 145/155 (93%)
Query: 12 DKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKR 71
+K+NPG+P+PR+FTVGRLDVATTGLII+TNDGDFAQ +SHPSSKL KEYIATIDG VNKR
Sbjct: 181 NKQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKR 240
Query: 72 HLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
HLIAISEGTVIEG HCTPD VELLPPQP+I +PR+R+VVHEGRNHEVRELVK+AGL+++S
Sbjct: 241 HLIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHS 300
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
LKR+RIGGFRLPSDLG G HVELKQ DLK +GWKS
Sbjct: 301 LKRIRIGGFRLPSDLGHGKHVELKQGDLKALGWKS 335
>gi|356535605|ref|XP_003536335.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
[Glycine max]
Length = 399
Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 125/166 (75%), Positives = 145/166 (87%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLFDDYL SW K++PG+P PRLFTVGRLDVATTGLIIVTNDGDFAQ +SHPSS L KEY
Sbjct: 234 ISLFDDYLNSWGKKHPGVPTPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEY 293
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
IATIDG V+KRHLIAISEGT +EG C PDVVELLP QP++ R RIRIVVHEGR HEVRE
Sbjct: 294 IATIDGLVHKRHLIAISEGTTVEGVLCVPDVVELLPRQPEMQRTRIRIVVHEGRKHEVRE 353
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
LVK AGL+++SLKR+RIGGFRLP DLG+G ++EL +++L +GWKS
Sbjct: 354 LVKRAGLEIHSLKRVRIGGFRLPPDLGLGKYIELNKTNLNALGWKS 399
>gi|388509884|gb|AFK43008.1| unknown [Medicago truncatula]
Length = 408
Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 119/165 (72%), Positives = 141/165 (85%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLFDD+L SWDK++PG+P PRLFTVGRLDVATTGL+IVTNDGDFAQ +SHPSS KEY
Sbjct: 238 ISLFDDFLSSWDKKHPGVPPPRLFTVGRLDVATTGLLIVTNDGDFAQKLSHPSSNFSKEY 297
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
IAT+DG V+KRHL AISEGT IEG HC PD VELLP PD R R+RIVVH+GR HEVRE
Sbjct: 298 IATVDGLVHKRHLTAISEGTTIEGVHCVPDSVELLPRMPDTQRSRLRIVVHDGRKHEVRE 357
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWK 165
LVK+AGL+++SLKR+RIGGFRLP DLGIG ++EL ++LK +G +
Sbjct: 358 LVKSAGLEIHSLKRVRIGGFRLPPDLGIGKYIELNPTNLKALGGR 402
>gi|357113998|ref|XP_003558788.1| PREDICTED: ribosomal large subunit pseudouridine synthase B-like
[Brachypodium distachyon]
Length = 405
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 115/162 (70%), Positives = 139/162 (85%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SL DDYLK W+K PG+P+PRLFTVGRLDVATTGLIIVTNDG+FAQ V+HPSS + KEY
Sbjct: 240 ISLLDDYLKGWNKIQPGIPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVAHPSSNITKEY 299
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+ TIDGAV+K+HL+AISEGT ++G PD+VE L QPD R R+RIVVHEGRNHEVRE
Sbjct: 300 VVTIDGAVHKKHLVAISEGTKVDGVKVVPDLVEPLDAQPDAKRTRLRIVVHEGRNHEVRE 359
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
LV+NAGLK+Y+LKR+RIG FRLP+DLGIG VELK++D+K +
Sbjct: 360 LVQNAGLKVYALKRVRIGRFRLPADLGIGKMVELKEADIKSL 401
>gi|226503651|ref|NP_001152020.1| LOC100285657 [Zea mays]
gi|195651911|gb|ACG45423.1| ribosomal large subunit pseudouridine synthase B [Zea mays]
Length = 406
Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 115/162 (70%), Positives = 139/162 (85%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLF+DYLK W+K PGLP+PRLFTVGRLDVAT GLIIVTNDG+FAQ ++HPSS + KEY
Sbjct: 241 VSLFNDYLKGWNKIQPGLPKPRLFTVGRLDVATAGLIIVTNDGEFAQKLAHPSSNVTKEY 300
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+ TIDGAV+K+HLIAISEGT I+G C PD+VE L Q D + R+RIVVHEGRNHEVRE
Sbjct: 301 VVTIDGAVHKKHLIAISEGTKIDGVMCIPDLVEPLAAQSDTRKTRLRIVVHEGRNHEVRE 360
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
LV+NAGL++Y+LKR+RIG FRLP+DLGIG VELKQ+D+K +
Sbjct: 361 LVQNAGLQVYALKRVRIGRFRLPADLGIGKFVELKQADIKAL 402
>gi|242042191|ref|XP_002468490.1| hypothetical protein SORBIDRAFT_01g046770 [Sorghum bicolor]
gi|241922344|gb|EER95488.1| hypothetical protein SORBIDRAFT_01g046770 [Sorghum bicolor]
Length = 407
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 140/162 (86%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLF+DYLK W+K PGLP+PRLFTVGRLDVAT+GLIIVTNDG+FAQ ++HPSS + KEY
Sbjct: 242 VSLFNDYLKGWNKIQPGLPKPRLFTVGRLDVATSGLIIVTNDGEFAQKLAHPSSNVTKEY 301
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+ TIDGAV+K+HLIAISEGT I+G C PD+VE L Q D + R++IVVHEGRNHEVRE
Sbjct: 302 VVTIDGAVHKKHLIAISEGTKIDGIMCIPDLVESLDAQSDTRKTRLKIVVHEGRNHEVRE 361
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
LV+NAGL++Y+LKR+RIG FRLP+DLGIG VELKQ+D+K +
Sbjct: 362 LVQNAGLQVYALKRVRIGRFRLPADLGIGKFVELKQADIKAL 403
>gi|326508874|dbj|BAJ86830.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510163|dbj|BAJ87298.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 404
Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 117/166 (70%), Positives = 139/166 (83%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SL DDYLK W+K PG+P+PRLFTVGRLDVATTGLIIVTNDG+FAQ VSHPSS + KEY
Sbjct: 239 ISLLDDYLKGWNKLQPGVPKPRLFTVGRLDVATTGLIIVTNDGEFAQKVSHPSSNITKEY 298
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+ TIDGAV+K+HL+AIS GTVI+G PD+VE L Q D R R++IVVHEGRNHEVRE
Sbjct: 299 VVTIDGAVHKKHLVAISGGTVIDGVKVVPDLVEPLDTQADTKRMRLKIVVHEGRNHEVRE 358
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
LV+NAGLK+Y+LKR+RIG FRLPSDLGIG VELK++D+K + S
Sbjct: 359 LVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKALDGNS 404
>gi|218192109|gb|EEC74536.1| hypothetical protein OsI_10056 [Oryza sativa Indica Group]
Length = 279
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/165 (69%), Positives = 137/165 (83%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLFDDYLK W+K PG+P+PRLFTVGRLDVAT+GLII+TNDG+FAQ +SHPSS + KEY
Sbjct: 114 ISLFDDYLKGWNKIQPGVPKPRLFTVGRLDVATSGLIIITNDGEFAQKLSHPSSNIMKEY 173
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+ TIDG V++ HLIAISEGT I+G C PD+VE L Q + R RIRI VHEGRNHEVRE
Sbjct: 174 VVTIDGPVHRNHLIAISEGTKIDGVKCIPDLVEPLDVQSNTKRTRIRIAVHEGRNHEVRE 233
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMGWK 165
LV+NAGL++Y+LKR+RIG FRLP DLGIG VELKQ+DLK + K
Sbjct: 234 LVQNAGLEVYALKRVRIGRFRLPPDLGIGKFVELKQTDLKSLEGK 278
>gi|222624207|gb|EEE58339.1| hypothetical protein OsJ_09447 [Oryza sativa Japonica Group]
Length = 1194
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/146 (70%), Positives = 123/146 (84%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLFDDYLK W+K PG+P+PRLFTVGRLDVAT+GLII+TNDG+FAQ +SHPSS + KEY
Sbjct: 161 ISLFDDYLKGWNKIQPGVPKPRLFTVGRLDVATSGLIIITNDGEFAQKLSHPSSNIMKEY 220
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+ TIDG V++ HLIAISEGT I+G C PD+VE L Q + R RIRI VHEGRNHEVRE
Sbjct: 221 VVTIDGPVHRNHLIAISEGTKIDGVKCIPDLVEPLDVQSNTKRTRIRIAVHEGRNHEVRE 280
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDL 146
LV+NAGL++Y+LKR+RIG FRLP DL
Sbjct: 281 LVQNAGLEVYALKRVRIGRFRLPPDL 306
>gi|168025695|ref|XP_001765369.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683422|gb|EDQ69832.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 113/149 (75%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SL +DY K WDK+NPG+ RPRLFTVGRLDVAT+GL+++TNDGDFAQ VSHPSS L KEY
Sbjct: 327 LSLLEDYWKIWDKKNPGVSRPRLFTVGRLDVATSGLLLITNDGDFAQRVSHPSSGLTKEY 386
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
IAT+ V KR L I+ GT ++ HC P VELLPP+P R RIRIVV EGRN EVRE
Sbjct: 387 IATVTERVTKRQLQLIAGGTKVQDVHCVPTEVELLPPEPGDARNRIRIVVCEGRNREVRE 446
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIG 149
LV NAGL++ +LKR+RIGG L L G
Sbjct: 447 LVANAGLEVLALKRVRIGGLSLSRKLSPG 475
>gi|115450787|ref|NP_001048994.1| Os03g0152700 [Oryza sativa Japonica Group]
gi|108706231|gb|ABF94026.1| RNA pseudouridylate synthase family protein, expressed [Oryza
sativa Japonica Group]
gi|113547465|dbj|BAF10908.1| Os03g0152700 [Oryza sativa Japonica Group]
Length = 415
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 108/129 (83%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLFDDYLK W+K PG+P+PRLFTVGRLDVAT+GLII+TNDG+FAQ +SHPSS + KEY
Sbjct: 256 ISLFDDYLKGWNKIQPGVPKPRLFTVGRLDVATSGLIIITNDGEFAQKLSHPSSNIMKEY 315
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+ TIDG V++ HLIAISEGT I+G C PD+VE L Q + R RIRI VHEGRNHEVRE
Sbjct: 316 VVTIDGPVHRNHLIAISEGTKIDGVKCIPDLVEPLDVQSNTKRTRIRIAVHEGRNHEVRE 375
Query: 121 LVKNAGLKL 129
LV+NAGL++
Sbjct: 376 LVQNAGLEV 384
>gi|302813266|ref|XP_002988319.1| hypothetical protein SELMODRAFT_45172 [Selaginella moellendorffii]
gi|300144051|gb|EFJ10738.1| hypothetical protein SELMODRAFT_45172 [Selaginella moellendorffii]
Length = 251
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 112/145 (77%), Gaps = 1/145 (0%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
L + YLK+W+K NPGL +PR FTVGRLDVATTGLI VTNDG+FAQ VSHPSS + KEY+
Sbjct: 107 LLEKYLKTWEKNNPGLTKPRFFTVGRLDVATTGLIFVTNDGEFAQKVSHPSSGITKEYLV 166
Query: 63 TIDG-AVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVREL 121
T+D +V KR L I+ GT I+G C P VEL+ +P R RIR+VV EGRNHEVR+L
Sbjct: 167 TVDSESVTKRQLKRIASGTEIDGVMCVPISVELVKSEPGDSRHRIRVVVTEGRNHEVRQL 226
Query: 122 VKNAGLKLYSLKRLRIGGFRLPSDL 146
V++A LK+++LKR+R+GG RLPS L
Sbjct: 227 VESAFLKVHALKRVRVGGLRLPSKL 251
>gi|302819504|ref|XP_002991422.1| hypothetical protein SELMODRAFT_45109 [Selaginella moellendorffii]
gi|300140815|gb|EFJ07534.1| hypothetical protein SELMODRAFT_45109 [Selaginella moellendorffii]
Length = 251
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 112/145 (77%), Gaps = 1/145 (0%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
L + YLK+W+K NPGL +PR FTVGRLDVATTGLI VTNDG+FAQ VSHPSS + KEY+
Sbjct: 107 LLEKYLKTWEKNNPGLTKPRFFTVGRLDVATTGLIFVTNDGEFAQKVSHPSSGITKEYLV 166
Query: 63 TIDG-AVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVREL 121
T+D +V KR L I+ GT I+G C P VEL+ +P R RIR+VV EGRNHEVR+L
Sbjct: 167 TVDNESVTKRQLKRIASGTEIDGVMCVPISVELVKSEPGDSRHRIRVVVTEGRNHEVRQL 226
Query: 122 VKNAGLKLYSLKRLRIGGFRLPSDL 146
V++A LK+++LKR+R+GG RLPS L
Sbjct: 227 VESAFLKVHALKRVRVGGLRLPSKL 251
>gi|414864870|tpg|DAA43427.1| TPA: ribosomal large subunit pseudouridine synthase B, partial [Zea
mays]
Length = 350
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 91/110 (82%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+SLF+DYLK W+K PGLP+PRLFTVGRLDVAT GLIIVTNDG+FAQ ++HPSS + KEY
Sbjct: 241 VSLFNDYLKGWNKIQPGLPKPRLFTVGRLDVATAGLIIVTNDGEFAQKLAHPSSNVTKEY 300
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVV 110
+ TIDGAV+K+HLIAISEGT I+G C PD+VE L Q D + R+RIVV
Sbjct: 301 VVTIDGAVHKKHLIAISEGTKIDGVMCIPDLVEPLAAQSDTRKTRLRIVV 350
>gi|302841952|ref|XP_002952520.1| hypothetical protein VOLCADRAFT_93239 [Volvox carteri f.
nagariensis]
gi|300262159|gb|EFJ46367.1| hypothetical protein VOLCADRAFT_93239 [Volvox carteri f.
nagariensis]
Length = 381
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 109/164 (66%), Gaps = 7/164 (4%)
Query: 1 MSLFDDYLKSWDKRNPGLPR--PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQK 58
+ L + +L+ W + + R PR FTVGRLDVA++GLI +TNDG +A V HPSS L K
Sbjct: 168 VQLLNPWLEQWRRNSKDTKRLPPRFFTVGRLDVASSGLIFITNDGHWANRVIHPSSGLTK 227
Query: 59 EYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEV 118
EY+ + ++ L A++ GT + GT +P VE+L R+RIVV EG+ HEV
Sbjct: 228 EYVVGLGRDASRPQLQALAAGTEVAGTFVSPVEVEVLGDSR-----RLRIVVQEGKKHEV 282
Query: 119 RELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
RELVK AGL+L SLKR+RIGGFRLP DLGIG ELK SDL+ +
Sbjct: 283 RELVKAAGLELTSLKRVRIGGFRLPRDLGIGGFRELKPSDLRTV 326
>gi|255550684|ref|XP_002516391.1| ribosomal large subunit pseudouridine synthase B, putative [Ricinus
communis]
gi|223544489|gb|EEF46008.1| ribosomal large subunit pseudouridine synthase B, putative [Ricinus
communis]
Length = 315
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/84 (82%), Positives = 79/84 (94%)
Query: 64 IDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVK 123
IDGAVNKRHLIAIS GT+I+G HCTPD VELLP +PD+ RPR+RIVVHEGRNHEVRELVK
Sbjct: 205 IDGAVNKRHLIAISGGTIIQGVHCTPDSVELLPRKPDLLRPRLRIVVHEGRNHEVRELVK 264
Query: 124 NAGLKLYSLKRLRIGGFRLPSDLG 147
NAGL+++SLKR+RIGG+RLPSDLG
Sbjct: 265 NAGLEVHSLKRVRIGGYRLPSDLG 288
>gi|384251741|gb|EIE25218.1| pseudouridine synthase, partial [Coccomyxa subellipsoidea C-169]
Length = 267
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 110/164 (67%), Gaps = 7/164 (4%)
Query: 1 MSLFDDYLKS-WDKRNPGLPR---PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
LF++++++ W ++ P PR PRLFTVGRLDVA+TGLI VTNDG +AQ+V HPS+ +
Sbjct: 86 FELFEEWMETVWRRKYPD-PRAVPPRLFTVGRLDVASTGLIFVTNDGMWAQSVQHPSAGI 144
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ T +R L I+ G ++G TP V + P + + R+RIVV EGRN
Sbjct: 145 TKEYVVTCSAEPTRRQLETIAAGCEVDGAFVTP--VAVAPVKDMGQKTRLRIVVAEGRNR 202
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
EVR +V AGL + +LKR+RIGG+RLP +LG+G V LK +++
Sbjct: 203 EVRTMVAAAGLDVMTLKRVRIGGYRLPRELGLGQIVSLKPHEVR 246
>gi|3402691|gb|AAC28994.1| unknown protein [Arabidopsis thaliana]
Length = 86
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 78/86 (90%)
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++EG HC PD VEL+P Q DIPR R+RIVVHEGRNHEVRELVKNAGL+++SLKR+RIGGF
Sbjct: 1 MVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGF 60
Query: 141 RLPSDLGIGMHVELKQSDLKLMGWKS 166
RLPSDLG+G HVELKQS+LK +GWK+
Sbjct: 61 RLPSDLGLGKHVELKQSELKALGWKN 86
>gi|308805586|ref|XP_003080105.1| unnamed protein product [Ostreococcus tauri]
gi|116058564|emb|CAL53753.1| unnamed protein product [Ostreococcus tauri]
Length = 405
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ LF+ + + + PG PRLFTVGRLDVATTGL++VT DGD++Q VSHPSS++ K+Y
Sbjct: 233 LDLFEQWREEFRSEYPGKLPPRLFTVGRLDVATTGLLLVTTDGDWSQRVSHPSSEVVKQY 292
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+ T + + ++A+S+GT ++G H P VE+ P+ RI + V +GRN EVR
Sbjct: 293 VVTANAKPTRAQIVAMSKGTEVDGAHVVPVRVEVAGADGG-PKNRIIVEVVDGRNREVRV 351
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
L ++AG+++ +LKR R+GG R+P +L +G +V LK + +
Sbjct: 352 LCESAGVEVKNLKRTRVGGLRMPKELPLGKYVRLKPAQI 390
>gi|255081278|ref|XP_002507861.1| predicted protein [Micromonas sp. RCC299]
gi|226523137|gb|ACO69119.1| predicted protein [Micromonas sp. RCC299]
Length = 257
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ LF+D+ + W KR+PG PRLFTVGRLDV TTG+++VT DG + Q V+HPSS++ K Y
Sbjct: 102 LDLFEDWREGWRKRHPGQLAPRLFTVGRLDVNTTGMLLVTTDGQWCQRVAHPSSQIPKSY 161
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPD-IPRPRIRIVVHEGRNHEVR 119
I T K + ++EG ++G H TP VE + D P RI + V +GRN EVR
Sbjct: 162 IVTAATRPTKAQIKKMAEGCEVDGVHVTPLRVESMEGARDGGPAHRILVDVVDGRNREVR 221
Query: 120 ELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELK 155
L +AG+ + LKR+R+GG R+PS+L IG ++ LK
Sbjct: 222 VLSASAGVDVKKLKRVRVGGLRMPSELPIGKYMSLK 257
>gi|412993182|emb|CCO16715.1| ribosomal large subunit pseudouridine synthase B [Bathycoccus
prasinos]
Length = 376
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L + + W K NPG PRLFTVGRLDV TTG+++VT DG ++Q V+HPSS + K Y
Sbjct: 204 LDLLQTWTEQWKKGNPGKLPPRLFTVGRLDVQTTGMLLVTTDGKWSQRVAHPSSGVVKRY 263
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+ T V + + +GT ++G H TP +VE + P+ R+ + V +GRN EVR
Sbjct: 264 VITAPERVTSAQITKMRKGTEVDGAHVTPVLVEAVTGDGG-PKNRVAVEVEDGRNREVRR 322
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELK 155
+ ++AG+++ +LKR RIGG ++PS+L GM LK
Sbjct: 323 IAESAGVEVKNLKRTRIGGLKMPSELPAGMFCSLK 357
>gi|15229266|ref|NP_189920.1| Pseudouridine synthase family protein [Arabidopsis thaliana]
gi|7263609|emb|CAB81575.1| putative protein [Arabidopsis thaliana]
gi|332644266|gb|AEE77787.1| Pseudouridine synthase family protein [Arabidopsis thaliana]
Length = 74
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 65/74 (87%)
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+AISEGT++EG HC PD+VEL+P Q DIPR +RIVVHEGRNHEVRELVKN GL++ SLK
Sbjct: 1 MAISEGTMVEGIHCVPDLVELMPKQHDIPRAWLRIVVHEGRNHEVRELVKNVGLEVDSLK 60
Query: 134 RLRIGGFRLPSDLG 147
R+RIGG RLPSDLG
Sbjct: 61 RVRIGGVRLPSDLG 74
>gi|297620540|ref|YP_003708677.1| RNA pseudouridylate synthase [Waddlia chondrophila WSU 86-1044]
gi|297375841|gb|ADI37671.1| RNA pseudouridylate synthase family protein [Waddlia chondrophila
WSU 86-1044]
Length = 232
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 89/143 (62%), Gaps = 7/143 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLFTVGRLD TTGL+IVTNDG+F V HPSS +QKEYIA D ++ HL AI+ G
Sbjct: 95 KERLFTVGRLDKETTGLLIVTNDGEFTNQVIHPSSNIQKEYIAKTDCEISNDHLKAIAAG 154
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
T +EG P V+ + + +++VV EG+ EVR L+ AGL++ +LKR RIG
Sbjct: 155 TSVEGVFVQPLSVK------KVRKATLKVVVGEGKKREVRLLIAAAGLEVRALKRTRIGS 208
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L S L IG L + D +L+
Sbjct: 209 LTLGS-LPIGHWRSLTERDKQLI 230
>gi|337292500|emb|CCB90519.1| Ribosomal large subunit pseudouridine synthase B [Waddlia
chondrophila 2032/99]
Length = 232
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 89/143 (62%), Gaps = 7/143 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLFTVGRLD TTGL+IVTNDG+F V HPSS +QKEYIA D ++ HL AI+ G
Sbjct: 95 KERLFTVGRLDKETTGLLIVTNDGEFTNQVIHPSSNIQKEYIAKTDCEISNDHLKAIAAG 154
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
T +EG P V+ + + ++++V EG+ EVR L+ AGL++ +LKR RIG
Sbjct: 155 TSVEGVFVQPLSVK------KVRKATLKVIVGEGKKREVRLLIAAAGLEVRALKRTRIGS 208
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L S L IG L + D +L+
Sbjct: 209 LTLGS-LPIGHWRSLTERDKQLI 230
>gi|303285788|ref|XP_003062184.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456595|gb|EEH53896.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 244
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
M LFD++ +W K++P PRLFTVGRLDV TTG+++VT DG + Q V+HP S++ K Y
Sbjct: 102 MDLFDEWKAAWRKKHPKRLPPRLFTVGRLDVNTTGMLLVTTDGQWCQRVAHPKSEVVKSY 161
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPD-IPRPRIRIVVHEGRNHEVR 119
+ T K + A++ G ++G P V + D P R+ + V +GRN EVR
Sbjct: 162 VLTASARPTKAQIRAMAAGAEVDGAFVKPVNVRSMDNDRDGGPPNRVLVEVVDGRNREVR 221
Query: 120 ELVKNAGLKLYSLKRLRIGGFRL 142
+L +AG+ LKR+R+GG R+
Sbjct: 222 QLASSAGVDCKKLKRVRVGGLRM 244
>gi|46445794|ref|YP_007159.1| ribosomal large chain pseudouridine synthase B [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399435|emb|CAF22884.1| putative ribosomal large chain pseudouridine synthase B [Candidatus
Protochlamydia amoebophila UWE25]
Length = 234
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 79/121 (65%), Gaps = 6/121 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLFTVGRLD T GL+IVTNDG FA + HPS+ +QKEY+A D ++ HLIAI+ GT+
Sbjct: 98 RLFTVGRLDKDTQGLLIVTNDGHFANQIIHPSANIQKEYLAKTDQEISHEHLIAIANGTL 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+EG P V+ + + I+I++ EG+ EVR L+ AGLK+ L R+R+GG
Sbjct: 158 VEGVFVKPIRVQ------KVRKGTIKIIIGEGKKREVRMLLSAAGLKVQELTRIRLGGLH 211
Query: 142 L 142
L
Sbjct: 212 L 212
>gi|3402689|gb|AAC28992.1| unknown protein [Arabidopsis thaliana]
Length = 303
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/59 (83%), Positives = 54/59 (91%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKE 59
+SLFD+YL SWDKRNPG P+PRLFTVGRLDVATTGLI+VTNDGDFAQ +SHPSS L KE
Sbjct: 245 ISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKE 303
>gi|384449969|ref|YP_005662571.1| RNA pseudouridine synthase [Chlamydophila pneumoniae LPCoLN]
gi|269302650|gb|ACZ32750.1| RNA pseudouridine synthase [Chlamydophila pneumoniae LPCoLN]
Length = 235
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 92/163 (56%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S +K+ PG LP R+FTVGRLD T+GLI+VTNDG+FA + HPSS +
Sbjct: 73 YLCSSEKKFPGTKLVIDLFAHLPY-RVFTVGRLDKETSGLILVTNDGEFANKIIHPSSGI 131
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V+ + L + EGT I+G H P V I R ++IVV EG+ H
Sbjct: 132 TKEYLLKVSRDVSAKDLEKLMEGTFIDGKHVRPVSV------TKIRRGTVKIVVSEGKKH 185
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R AGL + LKR+RIG L L G + EL ++L
Sbjct: 186 EIRLFADAAGLPILELKRIRIGSLVL-GGLRYGEYRELTDAEL 227
>gi|15836397|ref|NP_300921.1| pseudouridine synthase [Chlamydophila pneumoniae J138]
gi|16752175|ref|NP_445542.1| ribosomal large subunit pseudouridine synthase B [Chlamydophila
pneumoniae AR39]
gi|33242224|ref|NP_877165.1| pseudouridine synthase [Chlamydophila pneumoniae TW-183]
gi|7189918|gb|AAF38783.1| ribosomal large subunit pseudouridine synthase B [Chlamydophila
pneumoniae AR39]
gi|8979238|dbj|BAA99072.1| pseudouridine synthase [Chlamydophila pneumoniae J138]
gi|33236735|gb|AAP98822.1| putative pseudouridine synthase [Chlamydophila pneumoniae TW-183]
Length = 235
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 92/163 (56%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S +K+ PG LP R+FTVGRLD T+GLI+VTNDG+FA + HPSS +
Sbjct: 73 YLCSSEKKFPGTKLVIDLFAHLPY-RVFTVGRLDKETSGLILVTNDGEFANKIIHPSSGI 131
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V+ + L + EGT I+G H P V I R ++IVV EG+ H
Sbjct: 132 TKEYLLKVSRDVSAKDLGKLMEGTFIDGKHVRPVSV------TKIRRGTVKIVVSEGKKH 185
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R AGL + LKR+RIG L L G + EL ++L
Sbjct: 186 EIRLFADAAGLPILELKRIRIGSLVL-GGLRYGEYRELTDAEL 227
>gi|15618773|ref|NP_225059.1| pseudouridine synthase [Chlamydophila pneumoniae CWL029]
gi|4377181|gb|AAD19002.1| predicted pseudouridine synthase [Chlamydophila pneumoniae CWL029]
Length = 235
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 91/163 (55%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S +K+ PG LP R+FTVGRLD T+GLI+VTNDG+FA + HPSS +
Sbjct: 73 YLCSSEKKFPGTKLVIDLFAHLPY-RVFTVGRLDKETSGLILVTNDGEFANKIIHPSSGI 131
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V+ + L + EGT I+G H P V I R ++IVV EG+ H
Sbjct: 132 TKEYLLKVSRDVSAKDLGKLMEGTFIDGKHVRPVSV------TKIRRGTVKIVVSEGKKH 185
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R AG + LKR+RIG L L G + EL ++L
Sbjct: 186 EIRLFADAAGFPILELKRIRIGSLVL-GGLRYGEYRELTDAEL 227
>gi|166154940|ref|YP_001653195.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|165930928|emb|CAP06490.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|440526538|emb|CCP52022.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis
L2b/8200/07]
gi|440536362|emb|CCP61875.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2b/795]
gi|440542591|emb|CCP68105.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2b/UCH-2]
gi|440543482|emb|CCP68996.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis
L2b/Canada2]
gi|440544373|emb|CCP69887.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2b/LST]
gi|440545263|emb|CCP70777.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2b/Ams1]
gi|440546153|emb|CCP71667.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2b/CV204]
gi|440914415|emb|CCP90832.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2b/Ams2]
gi|440915305|emb|CCP91722.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2b/Ams3]
gi|440916197|emb|CCP92614.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis
L2b/Canada1]
gi|440917090|emb|CCP93507.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2b/Ams4]
gi|440917981|emb|CCP94398.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2b/Ams5]
Length = 241
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Query: 7 YLKSWDKRNPGLPRP---------RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQ 57
YL S +++ PG RLFTVGRLD T+GLI+VTNDG+FA V HPS +
Sbjct: 74 YLCSSERKFPGSKLVIDLLSHCPYRLFTVGRLDKETSGLILVTNDGEFANRVIHPSFGIT 133
Query: 58 KEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHE 117
KEY+ + V R L + GTVI+G P V+ + R I+I+V+EG+ HE
Sbjct: 134 KEYLLKVSRDVTARDLETLMAGTVIDGKVVRPVSVK------KVRRGTIKIIVNEGKKHE 187
Query: 118 VRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+R + AGL+L LKR+RIG L L G + EL S+L
Sbjct: 188 IRLFAEAAGLQLLELKRIRIGSLVL-GGLPYGKYRELTDSEL 228
>gi|166154065|ref|YP_001654183.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis 434/Bu]
gi|301335269|ref|ZP_07223513.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis L2tet1]
gi|165930053|emb|CAP03536.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis 434/Bu]
gi|440537256|emb|CCP62770.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L1/440/LN]
gi|440538145|emb|CCP63659.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis
L1/1322/p2]
gi|440539035|emb|CCP64549.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L1/115]
gi|440539924|emb|CCP65438.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L1/224]
gi|440540815|emb|CCP66329.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L2/25667R]
gi|440541703|emb|CCP67217.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis L3/404/LN]
Length = 241
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Query: 7 YLKSWDKRNPGLPRP---------RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQ 57
YL S +++ PG RLFTVGRLD T+GLI+VTNDG+FA V HPS +
Sbjct: 74 YLCSSERKFPGSKLVIDLLSHCPYRLFTVGRLDKETSGLILVTNDGEFANRVIHPSFGIT 133
Query: 58 KEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHE 117
KEY+ + V R L + GTVI+G P V+ + R I+I+V+EG+ HE
Sbjct: 134 KEYLLKVSRDVTARDLETLMAGTVIDGKVVRPVSVK------KVRRGTIKIIVNEGKKHE 187
Query: 118 VRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+R + AGL+L LKR+RIG L L G + EL S+L
Sbjct: 188 IRLFAEAAGLQLLELKRIRIGSLVL-GGLPYGKYRELTDSEL 228
>gi|376282733|ref|YP_005156559.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis A2497]
gi|385270451|ref|YP_005813611.1| Ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis A2497]
gi|347975591|gb|AEP35612.1| Ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis A2497]
gi|371908763|emb|CAX09395.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis A2497]
gi|438690661|emb|CCP49918.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis A/7249]
gi|438691746|emb|CCP49020.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis A/5291]
gi|438693119|emb|CCP48121.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis A/363]
Length = 241
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Query: 7 YLKSWDKRNPGLPRP---------RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQ 57
YL S +++ PG RLFTVGRLD T+GLI+VTNDG+FA V HPS +
Sbjct: 74 YLCSSERKFPGSKLVIDLLSHCPYRLFTVGRLDKETSGLILVTNDGEFANRVIHPSFGIT 133
Query: 58 KEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHE 117
KEY+ + V R L + GTVI+G P V+ + R I+I+V+EG+ HE
Sbjct: 134 KEYLLKVSRDVTARDLETLMAGTVIDGKVVRPVSVK------KVRRGTIKIIVNEGKKHE 187
Query: 118 VRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+R + AGL+L LKR+RIG L L G + EL S+L
Sbjct: 188 IRLFAEAAGLQLLELKRIRIGSLVL-GGLPYGKYRELTDSEL 228
>gi|15605456|ref|NP_220242.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis D/UW-3/CX]
gi|76789463|ref|YP_328549.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis A/HAR-13]
gi|237803153|ref|YP_002888347.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis B/Jali20/OT]
gi|237805074|ref|YP_002889228.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis B/TZ1A828/OT]
gi|255311554|ref|ZP_05354124.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis 6276]
gi|255317855|ref|ZP_05359101.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis 6276s]
gi|255349118|ref|ZP_05381125.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis 70]
gi|255503655|ref|ZP_05382045.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis 70s]
gi|255507334|ref|ZP_05382973.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis D(s)2923]
gi|339625471|ref|YP_004716950.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis L2c]
gi|385240264|ref|YP_005808106.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis G/9768]
gi|385241190|ref|YP_005809031.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis G/11222]
gi|385242116|ref|YP_005809956.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis E/11023]
gi|385243042|ref|YP_005810881.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis G/9301]
gi|385243931|ref|YP_005811777.1| Ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis D-EC]
gi|385244811|ref|YP_005812655.1| Ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis D-LC]
gi|385245726|ref|YP_005814549.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis E/150]
gi|385246650|ref|YP_005815472.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis G/11074]
gi|386263079|ref|YP_005816358.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis Sweden2]
gi|389858418|ref|YP_006360660.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis F/SW4]
gi|389859294|ref|YP_006361535.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis E/SW3]
gi|389860170|ref|YP_006362410.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis F/SW5]
gi|3329180|gb|AAC68318.1| predicted pseudouridine synthase [Chlamydia trachomatis D/UW-3/CX]
gi|76167993|gb|AAX51001.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis A/HAR-13]
gi|231273374|emb|CAX10289.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231274387|emb|CAX11182.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis B/Jali20/OT]
gi|289525767|emb|CBJ15248.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis Sweden2]
gi|296435342|gb|ADH17520.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis E/150]
gi|296436269|gb|ADH18443.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis G/9768]
gi|296437198|gb|ADH19368.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis G/11222]
gi|296438129|gb|ADH20290.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis G/11074]
gi|296439059|gb|ADH21212.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis E/11023]
gi|297140630|gb|ADH97388.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis G/9301]
gi|297748854|gb|ADI51400.1| Ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis D-EC]
gi|297749734|gb|ADI52412.1| Ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis D-LC]
gi|339460542|gb|AEJ77045.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis L2c]
gi|380249490|emb|CCE14786.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis F/SW5]
gi|380250365|emb|CCE13897.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis F/SW4]
gi|380251243|emb|CCE13008.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
trachomatis E/SW3]
gi|440525651|emb|CCP50902.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis K/SotonK1]
gi|440527435|emb|CCP52919.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis D/SotonD1]
gi|440528327|emb|CCP53811.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis D/SotonD5]
gi|440529218|emb|CCP54702.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis D/SotonD6]
gi|440530108|emb|CCP55592.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis E/SotonE4]
gi|440531008|emb|CCP56492.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis E/SotonE8]
gi|440531899|emb|CCP57409.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis F/SotonF3]
gi|440532792|emb|CCP58302.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis G/SotonG1]
gi|440533686|emb|CCP59196.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534580|emb|CCP60090.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis
Ia/SotonIa3]
gi|440535475|emb|CCP60985.1| 23S rRNA pseudouridine synthase F [Chlamydia trachomatis E/Bour]
Length = 241
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Query: 7 YLKSWDKRNPGLPRP---------RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQ 57
YL S +++ PG RLFTVGRLD T+GLI+VTNDG+FA V HPS +
Sbjct: 74 YLCSSERKFPGSKLVIDLLSHCPYRLFTVGRLDKETSGLILVTNDGEFANRVIHPSFGIT 133
Query: 58 KEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHE 117
KEY+ + V R L + GTVI+G P V+ + R I+I+V+EG+ HE
Sbjct: 134 KEYLLKVSRDVTARDLETLMAGTVIDGKVVRPVSVK------KVRRGTIKIIVNEGKKHE 187
Query: 118 VRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+R + AGL+L LKR+RIG L L G + EL S+L
Sbjct: 188 IRLFAEAAGLQLLELKRIRIGSLVL-GGLPYGKYRELTDSEL 228
>gi|338732201|ref|YP_004670674.1| RNA pseudouridine synthase [Simkania negevensis Z]
gi|336481584|emb|CCB88183.1| uncharacterized RNA pseudouridine synthase aq_1464 [Simkania
negevensis Z]
Length = 233
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 85/139 (61%), Gaps = 7/139 (5%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLFT+GRLD TTGL++VTNDG FAQ V HPS + KEY+ + L IS+G
Sbjct: 96 KNRLFTIGRLDRDTTGLLLVTNDGHFAQKVIHPSRNIAKEYLVKTREDITHEMLTKISKG 155
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
T+IEG P V+ + + +++VV EG+ EVR LV+N GL++ SL R+RIG
Sbjct: 156 TLIEGAWIKPYKVQ------KMRKGTLKVVVKEGKKREVRLLVQNGGLEILSLSRIRIGE 209
Query: 140 FRLPSDLGIGMHVELKQSD 158
RL +L G E+ +S+
Sbjct: 210 LRL-GNLPEGKWREMTESE 227
>gi|449071547|ref|YP_007438627.1| putative 16S pseudouridine synthase [Chlamydophila psittaci Mat116]
gi|449040055|gb|AGE75479.1| putative 16S pseudouridine synthase [Chlamydophila psittaci Mat116]
Length = 246
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S +++ PG LP R+FTVGRLD T+GLI+VTNDG+F+ + HPS +
Sbjct: 88 YLCSSERKFPGDKLVIDLFSHLPY-RVFTVGRLDKETSGLILVTNDGEFSNKIIHPSFGI 146
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V ++L + EGTVI+G P VE I R ++I+V+EG+ H
Sbjct: 147 TKEYLLKVSRDVTAKNLEDLMEGTVIDGKRVRPVSVE------KIRRGTLKIIVNEGKKH 200
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R + AGL + L R+RIG F L L G + EL +++
Sbjct: 201 EIRLFAEAAGLSILELSRIRIGSFVL-GGLRYGEYRELTDAEI 242
>gi|406593852|ref|YP_006741031.1| hypothetical protein B712_0969 [Chlamydia psittaci NJ1]
gi|405789724|gb|AFS28466.1| hypothetical protein B712_0969 [Chlamydia psittaci NJ1]
Length = 166
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S +++ PG LP R+FTVGRLD T+GLI+VTNDG+F+ + HPS +
Sbjct: 8 YLCSSERKFPGDKLVIDLFSHLPY-RVFTVGRLDKETSGLILVTNDGEFSNKIIHPSFGI 66
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V ++L + EGTVI+G P VE I R ++I+V+EG+ H
Sbjct: 67 TKEYLLKVSRDVTAKNLEDLMEGTVIDGKRVRPVSVE------KIRRGTLKIIVNEGKKH 120
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R + AGL + L R+RIG F L L G + EL +++
Sbjct: 121 EIRLFAEAAGLSILELSRIRIGSFVL-GGLRYGEYRELTDAEI 162
>gi|329943240|ref|ZP_08292014.1| hypothetical protein G5Q_0929 [Chlamydophila psittaci Cal10]
gi|332287819|ref|YP_004422720.1| putative 16S pseudouridine synthase [Chlamydophila psittaci 6BC]
gi|384450985|ref|YP_005663585.1| ribosomal large subunit pseudouridine synthase B [Chlamydophila
psittaci 6BC]
gi|384451973|ref|YP_005664571.1| putative 16S pseudouridine synthase [Chlamydophila psittaci 01DC11]
gi|384452947|ref|YP_005665544.1| putative 16S pseudouridine synthase [Chlamydophila psittaci 08DC60]
gi|384453926|ref|YP_005666522.1| putative 16S pseudouridine synthase [Chlamydophila psittaci C19/98]
gi|384454905|ref|YP_005667500.1| putative 16S pseudouridine synthase [Chlamydophila psittaci 02DC15]
gi|392377048|ref|YP_004064826.1| putative 16S pseudouridine synthase [Chlamydophila psittaci RD1]
gi|406592796|ref|YP_006739976.1| hypothetical protein B711_1030 [Chlamydia psittaci CP3]
gi|406594465|ref|YP_006742067.1| hypothetical protein B599_0967 [Chlamydia psittaci MN]
gi|407454472|ref|YP_006733580.1| hypothetical protein B595_1034 [Chlamydia psittaci 84/55]
gi|407455741|ref|YP_006734632.1| hypothetical protein B598_0967 [Chlamydia psittaci GR9]
gi|407457157|ref|YP_006735730.1| hypothetical protein B600_1028 [Chlamydia psittaci VS225]
gi|407461094|ref|YP_006738869.1| hypothetical protein B603_0973 [Chlamydia psittaci WC]
gi|410858831|ref|YP_006974771.1| putative 16S pseudouridine synthase [Chlamydia psittaci 01DC12]
gi|313848391|emb|CBY17395.1| putative 16S pseudouridine synthase [Chlamydophila psittaci RD1]
gi|325507299|gb|ADZ18937.1| putative 16S pseudouridine synthase [Chlamydophila psittaci 6BC]
gi|328814787|gb|EGF84777.1| hypothetical protein G5Q_0929 [Chlamydophila psittaci Cal10]
gi|328915079|gb|AEB55912.1| ribosomal large subunit pseudouridine synthase B [Chlamydophila
psittaci 6BC]
gi|334692707|gb|AEG85926.1| putative 16S pseudouridine synthase [Chlamydophila psittaci C19/98]
gi|334693683|gb|AEG86901.1| putative 16S pseudouridine synthase [Chlamydophila psittaci 01DC11]
gi|334694662|gb|AEG87879.1| putative 16S pseudouridine synthase [Chlamydophila psittaci 02DC15]
gi|334695636|gb|AEG88852.1| putative 16S pseudouridine synthase [Chlamydophila psittaci 08DC60]
gi|405781231|gb|AFS19981.1| hypothetical protein B595_1034 [Chlamydia psittaci 84/55]
gi|405782284|gb|AFS21033.1| hypothetical protein B598_0967 [Chlamydia psittaci GR9]
gi|405782897|gb|AFS21645.1| hypothetical protein B599_0967 [Chlamydia psittaci MN]
gi|405784418|gb|AFS23165.1| hypothetical protein B600_1028 [Chlamydia psittaci VS225]
gi|405787308|gb|AFS26052.1| hypothetical protein B603_0973 [Chlamydia psittaci WC]
gi|405788668|gb|AFS27411.1| hypothetical protein B711_1030 [Chlamydia psittaci CP3]
gi|410811726|emb|CCO02381.1| putative 16S pseudouridine synthase [Chlamydia psittaci 01DC12]
Length = 232
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S +++ PG LP R+FTVGRLD T+GLI+VTNDG+F+ + HPS +
Sbjct: 74 YLCSSERKFPGDKLVIDLFSHLPY-RVFTVGRLDKETSGLILVTNDGEFSNKIIHPSFGI 132
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V ++L + EGTVI+G P VE I R ++I+V+EG+ H
Sbjct: 133 TKEYLLKVSRDVTAKNLEDLMEGTVIDGKRVRPVSVE------KIRRGTLKIIVNEGKKH 186
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R + AGL + L R+RIG F L L G + EL +++
Sbjct: 187 EIRLFAEAAGLSILELSRIRIGSFVL-GGLRYGEYRELTDAEI 228
>gi|407458480|ref|YP_006736785.1| hypothetical protein B601_0974 [Chlamydia psittaci WS/RT/E30]
gi|405785252|gb|AFS23998.1| hypothetical protein B601_0974 [Chlamydia psittaci WS/RT/E30]
Length = 232
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S +++ PG LP R+FTVGRLD T+GLI+VTNDG+F+ + HPS +
Sbjct: 74 YLCSSERKFPGDKLVIDLFSHLPY-RVFTVGRLDKETSGLILVTNDGEFSNKIIHPSFGI 132
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V ++L + EGTVI+G P VE I R ++I+V+EG+ H
Sbjct: 133 TKEYLLKVSRDVTAKNLEDLMEGTVIDGKRVRPVSVE------KIRRGTLKIIVNEGKKH 186
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R + AGL + L R+RIG F L L G + EL +++
Sbjct: 187 EIRLFAEAAGLSILELSRIRIGSFVL-GGLRYGEYRELTDAEI 228
>gi|407459721|ref|YP_006737824.1| hypothetical protein B602_0970 [Chlamydia psittaci M56]
gi|405785870|gb|AFS24615.1| hypothetical protein B602_0970 [Chlamydia psittaci M56]
Length = 232
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S +++ PG LP R+FTVGRLD T+GLI+VTNDG+F+ + HPS +
Sbjct: 74 YLCSSERKFPGDKLVIDLFSHLPY-RVFTVGRLDKETSGLILVTNDGEFSNKIIHPSFGI 132
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V ++L + EGTVI+G P VE I R ++I+V+EG+ H
Sbjct: 133 TKEYLLKVSRDVTAKNLEDLMEGTVIDGKRVRPVSVE------KIRRGTLKIIVNEGKKH 186
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R + AGL + L R+RIG F L L G + EL +++
Sbjct: 187 EIRLFAEAAGLSILELSRIRIGSFVL-GGLRYGEYRELTDAEI 228
>gi|330443912|ref|YP_004376898.1| RNA pseudouridylate synthase [Chlamydophila pecorum E58]
gi|328807022|gb|AEB41195.1| RNA pseudouridylate synthase [Chlamydophila pecorum E58]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 7/138 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+FTVGRLD T+GLI+VTNDGDFA + HPS + KEY+ ++ V ++ L ++ +GT+
Sbjct: 98 RVFTVGRLDKETSGLILVTNDGDFANKIIHPSYGITKEYLLKVNRDVIEKDLNSLMQGTM 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + R I+IVV+EG+ HE+R + AGL++ LKR+RIG
Sbjct: 158 IDGKRVRPVAV------SKVRRGTIKIVVNEGKKHEIRLFAEAAGLQILELKRIRIGSLV 211
Query: 142 LPSDLGIGMHVELKQSDL 159
L L G + EL +++
Sbjct: 212 L-GGLRYGEYRELTDAEI 228
>gi|62185473|ref|YP_220258.1| 16S pseudouridine synthase [Chlamydophila abortus S26/3]
gi|424825516|ref|ZP_18250503.1| putative 16S pseudouridine synthase [Chlamydophila abortus LLG]
gi|62148540|emb|CAH64311.1| putative 16S pseudouridine synthase [Chlamydophila abortus S26/3]
gi|333410615|gb|EGK69602.1| putative 16S pseudouridine synthase [Chlamydophila abortus LLG]
Length = 232
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 93/163 (57%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S ++ PG LP R+FTVGRLD T+GLI+VTNDG+F+ + HPS +
Sbjct: 74 YLCSSERTFPGDKLVIDLFSHLPY-RVFTVGRLDKETSGLILVTNDGEFSNKIIHPSFGI 132
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V ++L + EGTVI+G P VE I R ++I+V+EG+ H
Sbjct: 133 TKEYLLKVSRDVTAKNLEDLMEGTVIDGKRVRPVSVE------KIRRGTLKIIVNEGKKH 186
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R + AGL + L R+RIG F L L G + EL +++
Sbjct: 187 EIRLFAEAAGLPILELSRIRIGSFVL-GGLRYGEYRELTDAEI 228
>gi|386578522|ref|YP_006074928.1| Pseudouridine synthase, Rsu [Streptococcus suis GZ1]
gi|292558985|gb|ADE31986.1| Pseudouridine synthase, Rsu [Streptococcus suis GZ1]
Length = 245
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYLARVKGVANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P V E++ P R + + +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VVIDGKKTKPAVYEIIKVDPVKNRSVVELTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGN 210
Query: 140 FRLPSDLGIGMHVELKQSDL-KLMGW 164
L + L G + +L + D+ KL W
Sbjct: 211 LDL-TGLRPGEYRKLNKKDISKLHTW 235
>gi|352518184|ref|YP_004887501.1| pseudouridine synthase RluB [Tetragenococcus halophilus NBRC 12172]
gi|348602291|dbj|BAK95337.1| pseudouridine synthase RluB [Tetragenococcus halophilus NBRC 12172]
Length = 240
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDGDF+Q + HP ++ K YIA + G + L +S+
Sbjct: 92 KERIYPVGRLDYNTSGLLLLTNDGDFSQKLMHPKYEIDKVYIAKVSGIATNKKLSPLSKK 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P E+L +++ +HEGRNH+V+ ++K G + LKR R G
Sbjct: 152 MHIEGKTLAPAKFEILSSDKKAQTSIVQLTIHEGRNHQVKNMLKACGFPVEKLKRERYGH 211
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L +L +G + EL ++D+
Sbjct: 212 LTL-ENLQVGKYRELNKNDV 230
>gi|270284888|ref|ZP_06194282.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
muridarum Nigg]
gi|270288916|ref|ZP_06195218.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
muridarum Weiss]
gi|11279963|pir||E81741 ribosomal large chain pseudouridine synthase B TC0096 [imported] -
Chlamydia muridarum (strain Nigg)
Length = 241
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 84/138 (60%), Gaps = 7/138 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLFTVGRLD T+GLI+VTNDG+FA V HPS + KEY+ + V + L ++ GT+
Sbjct: 98 RLFTVGRLDKETSGLILVTNDGEFANRVIHPSFGITKEYLLKVSRDVTAKDLESLMSGTM 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V+ + R I+I+V+EG+ HE+R + AGL+L LKR+RIG
Sbjct: 158 IDGRIVRPVSVK------KVRRGTIKIIVNEGKKHEIRLFAEAAGLQLLELKRIRIGSLV 211
Query: 142 LPSDLGIGMHVELKQSDL 159
L L G + EL ++L
Sbjct: 212 L-GGLPYGKYRELTDAEL 228
>gi|301336267|ref|ZP_07224469.1| ribosomal large subunit pseudouridine synthase B [Chlamydia
muridarum MopnTet14]
Length = 241
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Query: 7 YLKSWDKRNPGLPRP---------RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQ 57
YL S +++ PG RLFTVGRLD T+GLI+VTNDG+F+ V HPS +
Sbjct: 74 YLCSSERKFPGSKLVIDLLSHCPYRLFTVGRLDKETSGLILVTNDGEFSNRVIHPSFGIT 133
Query: 58 KEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHE 117
KEY+ + V+ R L + G VI+G P V+ + R I+I+V+EG+ HE
Sbjct: 134 KEYLLKVSRDVSARDLETLMAGVVIDGRIVRPVSVK------KVRRGTIKIIVNEGKKHE 187
Query: 118 VRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+R + AGL+L LKR+RIG L L G + EL ++L
Sbjct: 188 IRLFAEAAGLQLLELKRIRIGSLVL-GGLPYGQYRELTDAEL 228
>gi|89897918|ref|YP_515028.1| ribosomal large subunit pseudouridine synthase B [Chlamydophila
felis Fe/C-56]
gi|89331290|dbj|BAE80883.1| ribosomal large subunit pseudouridine synthase B [Chlamydophila
felis Fe/C-56]
Length = 239
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 93/163 (57%), Gaps = 18/163 (11%)
Query: 7 YLKSWDKRNPG----------LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKL 56
YL S +++ PG LP R+FTVGRLD T+GLI+VTNDG+F+ + HPS +
Sbjct: 81 YLCSSERKFPGDKLVIDLFSHLPY-RVFTVGRLDKETSGLILVTNDGEFSNKIIHPSFGI 139
Query: 57 QKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNH 116
KEY+ + V ++L + GT+I+G P VE I R I+I+V+EG+ H
Sbjct: 140 TKEYLLKVSRDVTAKNLEDLMGGTIIDGKRVRPVSVE------KIRRGTIKIIVNEGKKH 193
Query: 117 EVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
E+R + AGL + L R+RIG F L L G + EL +++
Sbjct: 194 EIRLFAEAAGLPILELSRIRIGSFVL-GGLRYGEYRELTDAEI 235
>gi|269124110|ref|YP_003306687.1| pseudouridine synthase [Streptobacillus moniliformis DSM 12112]
gi|268315436|gb|ACZ01810.1| pseudouridine synthase [Streptobacillus moniliformis DSM 12112]
Length = 228
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 7/144 (4%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
+ RLFT GRLD T GLII++NDGD V HP KL K YIA ID + H+ A+
Sbjct: 89 SKKRLFTYGRLDYMTEGLIIISNDGDIYNNVMHPKKKLYKSYIAKIDSDITDDHIEALKY 148
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
G VI+G P V+ I + +R+ +HEGRN ++R++ + G + +L+R+++G
Sbjct: 149 GVVIDGVRTLPAKVKT------ITKREVRVAIHEGRNRQIRKMFEVLGYTVKTLRRVKVG 202
Query: 139 GFRLPSDLGIGMHVELKQSDLKLM 162
L L +G + ++ ++K +
Sbjct: 203 ELSLKG-LEVGKYRKMTDDEIKYL 225
>gi|262283235|ref|ZP_06061002.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
2_1_36FAA]
gi|262261487|gb|EEY80186.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
2_1_36FAA]
Length = 242
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 77/123 (62%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G NK +L+ ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLLPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VEIDGKKTKPAVYEIIKVDPVKNRSVVQLTIHEGRNHQVKKMFQAVGLEVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417936247|ref|ZP_12579564.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
infantis X]
gi|343403156|gb|EGV15661.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
infantis X]
Length = 241
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 77/123 (62%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HPS+++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPSNEIDKVYVARVKGIANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|326803925|ref|YP_004321743.1| pseudouridylate synthase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650643|gb|AEA00826.1| pseudouridylate synthase [Aerococcus urinae ACS-120-V-Col10a]
Length = 243
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+++TNDGDFA + P + KEY A I+G V + + A ++G T+
Sbjct: 98 FPVGRLDKDTEGLLLLTNDGDFAHDLLSPKKLVSKEYYAEIEGIVTEEDVKAFAKGLTID 157
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G HC P +++L P R I + + EG+ H+V+ + + G ++ L+R RIG L
Sbjct: 158 QGDHCAPSQLDILATDPAKNRSEITVTLTEGKYHQVKRMFQAVGKEVIYLQRFRIGSLYL 217
Query: 143 PSDLGIGMHVELKQSDLKL 161
P +L +G +L + +L
Sbjct: 218 PEELELGTAFKLLPEEAQL 236
>gi|306820425|ref|ZP_07454061.1| ribosomal large subunit pseudouridine synthase B [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304551500|gb|EFM39455.1| ribosomal large subunit pseudouridine synthase B [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 232
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
P +F VGRLD +TGLIIVTNDGD A ++HPS ++K YIAT+DG +++ + SE
Sbjct: 91 PDISVFPVGRLDYDSTGLIIVTNDGDLANKIAHPSHHVKKTYIATLDGRLSEAQMKIFSE 150
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
G VI+ P +EL D + +I ++EGRN ++R+++ G + LKR+ IG
Sbjct: 151 GVVIDSKKTLPAEIELY----DFSETQYKISIYEGRNRQIRKMIDVLGRNVRELKRISIG 206
Query: 139 GFRL 142
+L
Sbjct: 207 KIKL 210
>gi|282891010|ref|ZP_06299515.1| hypothetical protein pah_c045o010 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174685|ref|YP_004651495.1| RNA pseudouridine synthase aq_1464 [Parachlamydia acanthamoebae
UV-7]
gi|281499003|gb|EFB41317.1| hypothetical protein pah_c045o010 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479043|emb|CCB85641.1| uncharacterized RNA pseudouridine synthase aq_1464 [Parachlamydia
acanthamoebae UV-7]
Length = 261
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLFTVGRLD T+GLIIVTNDG FA V HPS+ + KEY+ + V HL A+S GT+
Sbjct: 126 RLFTVGRLDKDTSGLIIVTNDGHFANRVIHPSANIHKEYLVKTNEEVEAEHLSALSSGTL 185
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E T P V + R ++I + EG+ E+R L+++A L + L R+RIGG
Sbjct: 186 VEKTFVRPIRV------SKVRRGTLKITIAEGKKREIRLLMESAKLPVLELTRIRIGGLH 239
Query: 142 L 142
L
Sbjct: 240 L 240
>gi|325568269|ref|ZP_08144636.1| ribosomal small subunit pseudouridine synthase A [Enterococcus
casseliflavus ATCC 12755]
gi|325158038|gb|EGC70191.1| ribosomal small subunit pseudouridine synthase A [Enterococcus
casseliflavus ATCC 12755]
Length = 250
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 80/140 (57%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T G +++TNDG A + P ++KEY A ++G + ++G
Sbjct: 104 REDLFPVGRLDKDTEGFLLITNDGGLAHQLLSPKKHVEKEYYAQVEGIMTAEDQKTFAKG 163
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++G P +++L D R I++++HEG+ H+V+ +V G ++ LKR+R+GG
Sbjct: 164 IKLDGEWTLPAELQILNVDEDETRSEIKLILHEGKFHQVKRMVHAVGKEVVYLKRIRMGG 223
Query: 140 FRLPSDLGIGMHVELKQSDL 159
LP DL +G + EL +L
Sbjct: 224 LSLPDDLALGEYRELTPEEL 243
>gi|306830112|ref|ZP_07463296.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis ATCC 6249]
gi|304427638|gb|EFM30734.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis ATCC 6249]
Length = 240
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L + G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKENLRPFTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VEIEGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417092285|ref|ZP_11957019.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis R61]
gi|353532854|gb|EHC02523.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis R61]
Length = 244
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYLARVKGVANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P V E++ P R + + +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VVIDGKKTKPAVYEIIKVDPVKNRSVVELTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGN 210
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L + L G + +L + D+
Sbjct: 211 LDL-TGLRPGEYRKLNEKDI 229
>gi|257877013|ref|ZP_05656666.1| pseudouridine synthase [Enterococcus casseliflavus EC20]
gi|257811179|gb|EEV39999.1| pseudouridine synthase [Enterococcus casseliflavus EC20]
Length = 257
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 80/140 (57%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T G +++TNDG A + P ++KEY A ++G + ++G
Sbjct: 111 REDLFPVGRLDKDTEGFLLITNDGGLAHQLLSPKKHVEKEYYAQVEGIMTAEDQKIFAKG 170
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++G P +++L D R I++++HEG+ H+V+ +V G ++ LKR+R+GG
Sbjct: 171 IKLDGEWTLPAELQILNVDEDEMRSEIKLILHEGKFHQVKRMVHAVGKEVVYLKRIRMGG 230
Query: 140 FRLPSDLGIGMHVELKQSDL 159
LP DL +G + EL +L
Sbjct: 231 LSLPDDLALGEYRELTSEEL 250
>gi|420264584|ref|ZP_14767213.1| ribosomal small subunit pseudouridine synthase A [Enterococcus sp.
C1]
gi|394767898|gb|EJF48128.1| ribosomal small subunit pseudouridine synthase A [Enterococcus sp.
C1]
Length = 239
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 80/140 (57%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T G +++TNDG A + P ++KEY A ++G + ++G
Sbjct: 93 REDLFPVGRLDKDTEGFLLITNDGGLAHQLLSPKKHVEKEYYAQVEGIMTAEDQKTFAKG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++G P +++L D R I++++HEG+ H+V+ +V G ++ LKR+R+GG
Sbjct: 153 IKLDGEWTLPAELQILNVDEDETRSEIKLILHEGKFHQVKRMVHAVGKEVVYLKRIRMGG 212
Query: 140 FRLPSDLGIGMHVELKQSDL 159
LP DL +G + EL +L
Sbjct: 213 LSLPDDLALGEYRELTPEEL 232
>gi|223934211|ref|ZP_03626147.1| pseudouridine synthase [Streptococcus suis 89/1591]
gi|302024332|ref|ZP_07249543.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis 05HAS68]
gi|330833322|ref|YP_004402147.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis ST3]
gi|386584725|ref|YP_006081128.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis D9]
gi|223897127|gb|EEF63552.1| pseudouridine synthase [Streptococcus suis 89/1591]
gi|329307545|gb|AEB81961.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis ST3]
gi|353736871|gb|AER17880.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis D9]
Length = 243
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYLARVKGVANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P V E++ P R + + +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VVIDGKKTKPAVYEIIKVDPVKNRSVVELTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGN 210
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L + L G + +L + D+
Sbjct: 211 LDL-TGLRPGEYRKLNKKDI 229
>gi|146319353|ref|YP_001199065.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis 05ZYH33]
gi|146321558|ref|YP_001201269.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis 98HAH33]
gi|253752382|ref|YP_003025523.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis SC84]
gi|253754208|ref|YP_003027349.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis P1/7]
gi|253756142|ref|YP_003029282.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis BM407]
gi|386580595|ref|YP_006077000.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis JS14]
gi|386582667|ref|YP_006079071.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis SS12]
gi|386586794|ref|YP_006083196.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis D12]
gi|386588791|ref|YP_006085192.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis A7]
gi|389857212|ref|YP_006359455.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis ST1]
gi|403062139|ref|YP_006650355.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis S735]
gi|145690159|gb|ABP90665.1| 16S rRNA uridine-516 pseudouridylate synthase and related
Pseudouridylate synthase [Streptococcus suis 05ZYH33]
gi|145692364|gb|ABP92869.1| 16S rRNA uridine-516 pseudouridylate synthase and related
Pseudouridylate synthase [Streptococcus suis 98HAH33]
gi|251816671|emb|CAZ52312.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis SC84]
gi|251818606|emb|CAZ56440.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis BM407]
gi|251820454|emb|CAR47153.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis P1/7]
gi|319758787|gb|ADV70729.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis JS14]
gi|353734813|gb|AER15823.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis SS12]
gi|353738940|gb|AER19948.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis D12]
gi|353740930|gb|AER21937.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis ST1]
gi|354985952|gb|AER44850.1| 16S rRNA uridine-516 pseudouridylate synthase family protein
[Streptococcus suis A7]
gi|402809465|gb|AFR00957.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
suis S735]
Length = 243
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYLARVKGVANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P V E++ P R + + +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VVIDGKKTKPAVYEIIKVDPVKNRSVVELTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGN 210
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L + L G + +L + D+
Sbjct: 211 LDL-TGLRPGEYRKLNKKDI 229
>gi|421207298|ref|ZP_15664349.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2090008]
gi|421230471|ref|ZP_15687134.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2061376]
gi|421292733|ref|ZP_15743467.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|421312676|ref|ZP_15763277.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
gi|395574020|gb|EJG34605.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2090008]
gi|395593483|gb|EJG53731.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2061376]
gi|395892040|gb|EJH03034.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|395908470|gb|EJH19349.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
Length = 240
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 77/123 (62%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G VNK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVVNKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|422884690|ref|ZP_16931138.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK49]
gi|332359120|gb|EGJ36941.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK49]
Length = 242
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 85/140 (60%), Gaps = 1/140 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTKPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L +D+ G + +L + ++
Sbjct: 211 LDL-TDIKPGEYRKLSKKEV 229
>gi|257880467|ref|ZP_05660120.1| pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257883279|ref|ZP_05662932.1| pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257886356|ref|ZP_05666009.1| pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|257891502|ref|ZP_05671155.1| pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|257894555|ref|ZP_05674208.1| pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|260562466|ref|ZP_05832976.1| pseudouridine synthase [Enterococcus faecium C68]
gi|261207204|ref|ZP_05921893.1| pseudouridine synthase [Enterococcus faecium TC 6]
gi|289566697|ref|ZP_06447113.1| ribosomal small subunit pseudouridine synthase A [Enterococcus
faecium D344SRF]
gi|257814695|gb|EEV43453.1| pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257818937|gb|EEV46265.1| pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257822212|gb|EEV49342.1| pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|257827862|gb|EEV54488.1| pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|257830934|gb|EEV57541.1| pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|260073151|gb|EEW61496.1| pseudouridine synthase [Enterococcus faecium C68]
gi|260078832|gb|EEW66534.1| pseudouridine synthase [Enterococcus faecium TC 6]
gi|289161514|gb|EFD09398.1| ribosomal small subunit pseudouridine synthase A [Enterococcus
faecium D344SRF]
Length = 245
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A + G + + + +EG
Sbjct: 99 REDLFPVGRLDKDTEGLLILTNDGVFAHQLLSPKKHVEKEYLAEVSGIMTEEDIRLFAEG 158
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I+G T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 159 LIIDGDEQTLPAKLQIDQVDQETETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 218
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + + + +L+
Sbjct: 219 KFWLPKDLNKGQYRPMTKEELE 240
>gi|227550282|ref|ZP_03980331.1| pseudouridylate synthase [Enterococcus faecium TX1330]
gi|257889008|ref|ZP_05668661.1| pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|257897603|ref|ZP_05677256.1| pseudouridine synthase [Enterococcus faecium Com12]
gi|227180583|gb|EEI61555.1| pseudouridylate synthase [Enterococcus faecium TX1330]
gi|257825071|gb|EEV51994.1| pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|257834168|gb|EEV60589.1| pseudouridine synthase [Enterococcus faecium Com12]
Length = 255
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A + G + + + +EG
Sbjct: 109 REDLFPVGRLDKDTEGLLILTNDGIFAHQLLSPKKHVEKEYLAEVSGIMTEEDIRLFAEG 168
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I+G T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 169 LIIDGDEQTLPAKLQIDQVDQESETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 228
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + + + +L+
Sbjct: 229 NFWLPKDLNKGQYRPMTKEELE 250
>gi|401681225|ref|ZP_10813130.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. AS14]
gi|400187360|gb|EJO21555.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. AS14]
Length = 242
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R+R G
Sbjct: 151 IEIEGRKTKPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRIRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|339641272|ref|ZP_08662716.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. oral taxon 056 str. F0418]
gi|339454541|gb|EGP67156.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. oral taxon 056 str. F0418]
Length = 242
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VEIDGKKTKPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFEAIGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|293572005|ref|ZP_06683018.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E980]
gi|430842881|ref|ZP_19460788.1| pseudouridine synthase [Enterococcus faecium E1007]
gi|431064138|ref|ZP_19493485.1| pseudouridine synthase [Enterococcus faecium E1604]
gi|431131423|ref|ZP_19498974.1| pseudouridine synthase [Enterococcus faecium E1613]
gi|431602200|ref|ZP_19522576.1| pseudouridine synthase [Enterococcus faecium E1861]
gi|431739314|ref|ZP_19528249.1| pseudouridine synthase [Enterococcus faecium E1972]
gi|431742425|ref|ZP_19531318.1| pseudouridine synthase [Enterococcus faecium E2039]
gi|291607929|gb|EFF37238.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E980]
gi|430492592|gb|ELA68956.1| pseudouridine synthase [Enterococcus faecium E1007]
gi|430565983|gb|ELB05106.1| pseudouridine synthase [Enterococcus faecium E1613]
gi|430568779|gb|ELB07809.1| pseudouridine synthase [Enterococcus faecium E1604]
gi|430589968|gb|ELB28060.1| pseudouridine synthase [Enterococcus faecium E1861]
gi|430596042|gb|ELB33899.1| pseudouridine synthase [Enterococcus faecium E1972]
gi|430600183|gb|ELB37841.1| pseudouridine synthase [Enterococcus faecium E2039]
Length = 239
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A ++G + + + +EG
Sbjct: 93 REDLFPVGRLDKDTEGLLILTNDGVFAHQLLSPKKHVEKEYLAEVNGIMTEEDIRLFAEG 152
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I+G T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 153 LIIDGDEQTLPAKLQIDQVDQESETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 212
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + + + +L+
Sbjct: 213 NFCLPKDLNRGQYRPMTKEELE 234
>gi|225857461|ref|YP_002738972.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae P1031]
gi|444409553|ref|ZP_21206142.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0076]
gi|444413010|ref|ZP_21209328.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0153]
gi|444423110|ref|ZP_21218737.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0446]
gi|225725990|gb|ACO21842.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae P1031]
gi|444273740|gb|ELU79408.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0153]
gi|444279254|gb|ELU84659.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0076]
gi|444287574|gb|ELU92495.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0446]
Length = 240
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 77/123 (62%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++++HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLIIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417939491|ref|ZP_12582783.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
infantis SK970]
gi|343390209|gb|EGV02792.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
infantis SK970]
Length = 236
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|430854266|ref|ZP_19471982.1| pseudouridine synthase [Enterococcus faecium E1258]
gi|430538995|gb|ELA79258.1| pseudouridine synthase [Enterococcus faecium E1258]
Length = 239
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A + G + + + +EG
Sbjct: 93 REDLFPVGRLDKDTEGLLILTNDGVFAHQLLSPKKHVEKEYLAEVSGIMTEEDIRLFAEG 152
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I+G T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 153 LIIDGDEQTLPAKLQIDQVDQETETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 212
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + + + +L+
Sbjct: 213 KFWLPKDLSKGQYRPMTKEELE 234
>gi|69244107|ref|ZP_00602643.1| Pseudouridine synthase, Rsu [Enterococcus faecium DO]
gi|293557176|ref|ZP_06675728.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1039]
gi|293563963|ref|ZP_06678370.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1162]
gi|293568184|ref|ZP_06679518.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1071]
gi|294614323|ref|ZP_06694240.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1636]
gi|294619970|ref|ZP_06699342.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1679]
gi|294622171|ref|ZP_06701239.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium U0317]
gi|314940301|ref|ZP_07847468.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|314941863|ref|ZP_07848734.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|314949516|ref|ZP_07852851.1| conserved hypothetical protein [Enterococcus faecium TX0082]
gi|314952902|ref|ZP_07855870.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|314994523|ref|ZP_07859796.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
gi|314995270|ref|ZP_07860382.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|383329882|ref|YP_005355766.1| 16S rRNA pseudouridylate synthase A [Enterococcus faecium Aus0004]
gi|389869691|ref|YP_006377114.1| pseudouridylate synthase [Enterococcus faecium DO]
gi|406586169|ref|ZP_11061105.1| 16S rRNA pseudouridylate synthase A [Enterococcus sp. GMD2E]
gi|406589897|ref|ZP_11064313.1| 16S rRNA pseudouridylate synthase A [Enterococcus sp. GMD1E]
gi|410936337|ref|ZP_11368204.1| pseudouridylate synthase [Enterococcus sp. GMD5E]
gi|415890583|ref|ZP_11549518.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E4453]
gi|416143025|ref|ZP_11599698.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E4452]
gi|424793374|ref|ZP_18219494.1| pseudouridylate synthase [Enterococcus faecium V689]
gi|424808691|ref|ZP_18234086.1| pseudouridylate synthase [Enterococcus faecium S447]
gi|424827709|ref|ZP_18252479.1| pseudouridylate synthase [Enterococcus faecium R501]
gi|424862626|ref|ZP_18286554.1| pseudouridylate synthase [Enterococcus faecium R499]
gi|424951608|ref|ZP_18366684.1| pseudouridylate synthase [Enterococcus faecium R496]
gi|424954444|ref|ZP_18369345.1| pseudouridylate synthase [Enterococcus faecium R494]
gi|424958111|ref|ZP_18372779.1| pseudouridylate synthase [Enterococcus faecium R446]
gi|424962520|ref|ZP_18376857.1| pseudouridylate synthase [Enterococcus faecium P1986]
gi|424965944|ref|ZP_18379818.1| pseudouridylate synthase [Enterococcus faecium P1190]
gi|424969360|ref|ZP_18382939.1| pseudouridylate synthase [Enterococcus faecium P1140]
gi|424972991|ref|ZP_18386294.1| pseudouridylate synthase [Enterococcus faecium P1139]
gi|424976072|ref|ZP_18389189.1| pseudouridylate synthase [Enterococcus faecium P1137]
gi|424978139|ref|ZP_18391086.1| pseudouridylate synthase [Enterococcus faecium P1123]
gi|424982716|ref|ZP_18395345.1| pseudouridylate synthase [Enterococcus faecium ERV99]
gi|424985532|ref|ZP_18398003.1| pseudouridylate synthase [Enterococcus faecium ERV69]
gi|424988468|ref|ZP_18400786.1| pseudouridylate synthase [Enterococcus faecium ERV38]
gi|424992354|ref|ZP_18404424.1| pseudouridylate synthase [Enterococcus faecium ERV26]
gi|424995796|ref|ZP_18407650.1| pseudouridylate synthase [Enterococcus faecium ERV168]
gi|424998983|ref|ZP_18410637.1| pseudouridylate synthase [Enterococcus faecium ERV165]
gi|425002048|ref|ZP_18413512.1| pseudouridylate synthase [Enterococcus faecium ERV161]
gi|425004735|ref|ZP_18416025.1| pseudouridylate synthase [Enterococcus faecium ERV102]
gi|425008955|ref|ZP_18420002.1| pseudouridylate synthase [Enterococcus faecium ERV1]
gi|425012134|ref|ZP_18422972.1| pseudouridylate synthase [Enterococcus faecium E422]
gi|425016127|ref|ZP_18426711.1| pseudouridylate synthase [Enterococcus faecium E417]
gi|425017100|ref|ZP_18427629.1| pseudouridylate synthase [Enterococcus faecium C621]
gi|425022356|ref|ZP_18432542.1| pseudouridylate synthase [Enterococcus faecium C497]
gi|425028971|ref|ZP_18435271.1| pseudouridylate synthase [Enterococcus faecium C1904]
gi|425033286|ref|ZP_18438270.1| pseudouridylate synthase [Enterococcus faecium 515]
gi|425036102|ref|ZP_18440894.1| pseudouridylate synthase [Enterococcus faecium 514]
gi|425040111|ref|ZP_18444599.1| pseudouridylate synthase [Enterococcus faecium 513]
gi|425043580|ref|ZP_18447803.1| pseudouridylate synthase [Enterococcus faecium 511]
gi|425047201|ref|ZP_18451174.1| pseudouridylate synthase [Enterococcus faecium 510]
gi|425050261|ref|ZP_18454026.1| pseudouridylate synthase [Enterococcus faecium 509]
gi|425052878|ref|ZP_18456455.1| pseudouridylate synthase [Enterococcus faecium 506]
gi|425057846|ref|ZP_18461245.1| pseudouridylate synthase [Enterococcus faecium 504]
gi|425062445|ref|ZP_18465602.1| pseudouridylate synthase [Enterococcus faecium 503]
gi|427397548|ref|ZP_18890030.1| pseudouridine synthase [Enterococcus durans FB129-CNAB-4]
gi|430821788|ref|ZP_19440375.1| pseudouridine synthase [Enterococcus faecium E0045]
gi|430824529|ref|ZP_19443085.1| pseudouridine synthase [Enterococcus faecium E0120]
gi|430827407|ref|ZP_19445550.1| pseudouridine synthase [Enterococcus faecium E0164]
gi|430830047|ref|ZP_19448114.1| pseudouridine synthase [Enterococcus faecium E0269]
gi|430832611|ref|ZP_19450651.1| pseudouridine synthase [Enterococcus faecium E0333]
gi|430834120|ref|ZP_19452129.1| pseudouridine synthase [Enterococcus faecium E0679]
gi|430837624|ref|ZP_19455586.1| pseudouridine synthase [Enterococcus faecium E0680]
gi|430840303|ref|ZP_19458230.1| pseudouridine synthase [Enterococcus faecium E0688]
gi|430845607|ref|ZP_19463491.1| pseudouridine synthase [Enterococcus faecium E1050]
gi|430848371|ref|ZP_19466190.1| pseudouridine synthase [Enterococcus faecium E1133]
gi|430850253|ref|ZP_19468016.1| pseudouridine synthase [Enterococcus faecium E1185]
gi|430856222|ref|ZP_19473925.1| pseudouridine synthase [Enterococcus faecium E1392]
gi|430859245|ref|ZP_19476858.1| pseudouridine synthase [Enterococcus faecium E1552]
gi|430860984|ref|ZP_19478579.1| pseudouridine synthase [Enterococcus faecium E1573]
gi|430868534|ref|ZP_19482828.1| pseudouridine synthase [Enterococcus faecium E1574]
gi|430922038|ref|ZP_19485361.1| pseudouridine synthase [Enterococcus faecium E1575]
gi|430968731|ref|ZP_19487892.1| pseudouridine synthase [Enterococcus faecium E1576]
gi|431017516|ref|ZP_19490393.1| pseudouridine synthase [Enterococcus faecium E1578]
gi|431220425|ref|ZP_19501359.1| pseudouridine synthase [Enterococcus faecium E1620]
gi|431243644|ref|ZP_19503817.1| pseudouridine synthase [Enterococcus faecium E1622]
gi|431261258|ref|ZP_19505755.1| pseudouridine synthase [Enterococcus faecium E1623]
gi|431323297|ref|ZP_19509101.1| pseudouridine synthase [Enterococcus faecium E1626]
gi|431388060|ref|ZP_19511666.1| pseudouridine synthase [Enterococcus faecium E1627]
gi|431472741|ref|ZP_19514469.1| pseudouridine synthase [Enterococcus faecium E1630]
gi|431520956|ref|ZP_19516670.1| pseudouridine synthase [Enterococcus faecium E1634]
gi|431565445|ref|ZP_19519807.1| pseudouridine synthase [Enterococcus faecium E1731]
gi|431703912|ref|ZP_19525138.1| pseudouridine synthase [Enterococcus faecium E1904]
gi|431744364|ref|ZP_19533233.1| pseudouridine synthase [Enterococcus faecium E2071]
gi|431747777|ref|ZP_19536546.1| pseudouridine synthase [Enterococcus faecium E2134]
gi|431750391|ref|ZP_19539110.1| pseudouridine synthase [Enterococcus faecium E2297]
gi|431755400|ref|ZP_19544049.1| pseudouridine synthase [Enterococcus faecium E2883]
gi|431761371|ref|ZP_19549945.1| pseudouridine synthase [Enterococcus faecium E3346]
gi|431766561|ref|ZP_19555037.1| pseudouridine synthase [Enterococcus faecium E4215]
gi|431769068|ref|ZP_19557496.1| pseudouridine synthase [Enterococcus faecium E1321]
gi|431771687|ref|ZP_19560067.1| pseudouridine synthase [Enterococcus faecium E1644]
gi|431773294|ref|ZP_19561621.1| pseudouridine synthase [Enterococcus faecium E2369]
gi|431777926|ref|ZP_19566167.1| pseudouridine synthase [Enterococcus faecium E2560]
gi|431780664|ref|ZP_19568837.1| pseudouridine synthase [Enterococcus faecium E4389]
gi|431786827|ref|ZP_19574825.1| pseudouridine synthase [Enterococcus faecium E6045]
gi|447913769|ref|YP_007395181.1| Ribosomal small subunit pseudouridine synthase A [Enterococcus
faecium NRRL B-2354]
gi|68196564|gb|EAN10990.1| Pseudouridine synthase, Rsu [Enterococcus faecium DO]
gi|291589084|gb|EFF20898.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1071]
gi|291592795|gb|EFF24387.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1636]
gi|291593800|gb|EFF25302.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1679]
gi|291598298|gb|EFF29389.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium U0317]
gi|291600677|gb|EFF30977.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1039]
gi|291604053|gb|EFF33580.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1162]
gi|313590526|gb|EFR69371.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|313591101|gb|EFR69946.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
gi|313595024|gb|EFR73869.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|313599347|gb|EFR78192.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|313640477|gb|EFS05057.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|313644130|gb|EFS08710.1| conserved hypothetical protein [Enterococcus faecium TX0082]
gi|364089427|gb|EHM32116.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E4452]
gi|364094443|gb|EHM36617.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E4453]
gi|378939576|gb|AFC64648.1| 16S rRNA pseudouridylate synthase A [Enterococcus faecium Aus0004]
gi|388534940|gb|AFK60132.1| pseudouridylate synthase [Enterococcus faecium DO]
gi|402916295|gb|EJX37180.1| pseudouridylate synthase [Enterococcus faecium V689]
gi|402918455|gb|EJX39145.1| pseudouridylate synthase [Enterococcus faecium S447]
gi|402923178|gb|EJX43495.1| pseudouridylate synthase [Enterococcus faecium R501]
gi|402925319|gb|EJX45471.1| pseudouridylate synthase [Enterococcus faecium R499]
gi|402929225|gb|EJX49004.1| pseudouridylate synthase [Enterococcus faecium R496]
gi|402936760|gb|EJX55912.1| pseudouridylate synthase [Enterococcus faecium R494]
gi|402940299|gb|EJX59137.1| pseudouridylate synthase [Enterococcus faecium P1986]
gi|402941617|gb|EJX60329.1| pseudouridylate synthase [Enterococcus faecium R446]
gi|402942205|gb|EJX60828.1| pseudouridylate synthase [Enterococcus faecium P1190]
gi|402948918|gb|EJX67018.1| pseudouridylate synthase [Enterococcus faecium P1140]
gi|402951742|gb|EJX69625.1| pseudouridylate synthase [Enterococcus faecium P1139]
gi|402951818|gb|EJX69693.1| pseudouridylate synthase [Enterococcus faecium P1137]
gi|402959943|gb|EJX77143.1| pseudouridylate synthase [Enterococcus faecium ERV99]
gi|402963024|gb|EJX79923.1| pseudouridylate synthase [Enterococcus faecium P1123]
gi|402965739|gb|EJX82432.1| pseudouridylate synthase [Enterococcus faecium ERV69]
gi|402971858|gb|EJX88101.1| pseudouridylate synthase [Enterococcus faecium ERV38]
gi|402973613|gb|EJX89724.1| pseudouridylate synthase [Enterococcus faecium ERV26]
gi|402976204|gb|EJX92116.1| pseudouridylate synthase [Enterococcus faecium ERV168]
gi|402981196|gb|EJX96742.1| pseudouridylate synthase [Enterococcus faecium ERV165]
gi|402984668|gb|EJX99957.1| pseudouridylate synthase [Enterococcus faecium ERV161]
gi|402988611|gb|EJY03606.1| pseudouridylate synthase [Enterococcus faecium ERV102]
gi|402991084|gb|EJY05910.1| pseudouridylate synthase [Enterococcus faecium ERV1]
gi|402993269|gb|EJY07884.1| pseudouridylate synthase [Enterococcus faecium E417]
gi|402994229|gb|EJY08774.1| pseudouridylate synthase [Enterococcus faecium E422]
gi|403003106|gb|EJY17022.1| pseudouridylate synthase [Enterococcus faecium C497]
gi|403004562|gb|EJY18354.1| pseudouridylate synthase [Enterococcus faecium C1904]
gi|403005377|gb|EJY19090.1| pseudouridylate synthase [Enterococcus faecium C621]
gi|403010594|gb|EJY23959.1| pseudouridylate synthase [Enterococcus faecium 515]
gi|403013632|gb|EJY26710.1| pseudouridylate synthase [Enterococcus faecium 513]
gi|403015886|gb|EJY28746.1| pseudouridylate synthase [Enterococcus faecium 514]
gi|403018796|gb|EJY31450.1| pseudouridylate synthase [Enterococcus faecium 511]
gi|403022385|gb|EJY34757.1| pseudouridylate synthase [Enterococcus faecium 510]
gi|403024453|gb|EJY36610.1| pseudouridylate synthase [Enterococcus faecium 509]
gi|403032616|gb|EJY44166.1| pseudouridylate synthase [Enterococcus faecium 506]
gi|403038264|gb|EJY49486.1| pseudouridylate synthase [Enterococcus faecium 503]
gi|403039641|gb|EJY50777.1| pseudouridylate synthase [Enterococcus faecium 504]
gi|404461606|gb|EKA07503.1| 16S rRNA pseudouridylate synthase A [Enterococcus sp. GMD2E]
gi|404470148|gb|EKA14817.1| 16S rRNA pseudouridylate synthase A [Enterococcus sp. GMD1E]
gi|410735283|gb|EKQ77197.1| pseudouridylate synthase [Enterococcus sp. GMD5E]
gi|425722224|gb|EKU85121.1| pseudouridine synthase [Enterococcus durans FB129-CNAB-4]
gi|430438060|gb|ELA48548.1| pseudouridine synthase [Enterococcus faecium E0045]
gi|430441007|gb|ELA51153.1| pseudouridine synthase [Enterococcus faecium E0120]
gi|430444015|gb|ELA53927.1| pseudouridine synthase [Enterococcus faecium E0164]
gi|430479171|gb|ELA56440.1| pseudouridine synthase [Enterococcus faecium E0269]
gi|430479666|gb|ELA56882.1| pseudouridine synthase [Enterococcus faecium E0333]
gi|430485643|gb|ELA62543.1| pseudouridine synthase [Enterococcus faecium E0679]
gi|430487138|gb|ELA63908.1| pseudouridine synthase [Enterococcus faecium E0680]
gi|430489789|gb|ELA66364.1| pseudouridine synthase [Enterococcus faecium E0688]
gi|430495414|gb|ELA71589.1| pseudouridine synthase [Enterococcus faecium E1050]
gi|430534942|gb|ELA75367.1| pseudouridine synthase [Enterococcus faecium E1133]
gi|430535878|gb|ELA76269.1| pseudouridine synthase [Enterococcus faecium E1185]
gi|430543989|gb|ELA84039.1| pseudouridine synthase [Enterococcus faecium E1552]
gi|430545308|gb|ELA85291.1| pseudouridine synthase [Enterococcus faecium E1392]
gi|430548798|gb|ELA88646.1| pseudouridine synthase [Enterococcus faecium E1574]
gi|430551302|gb|ELA91071.1| pseudouridine synthase [Enterococcus faecium E1573]
gi|430553854|gb|ELA93529.1| pseudouridine synthase [Enterococcus faecium E1575]
gi|430554901|gb|ELA94469.1| pseudouridine synthase [Enterococcus faecium E1576]
gi|430559215|gb|ELA98575.1| pseudouridine synthase [Enterococcus faecium E1578]
gi|430569520|gb|ELB08521.1| pseudouridine synthase [Enterococcus faecium E1620]
gi|430571613|gb|ELB10499.1| pseudouridine synthase [Enterococcus faecium E1622]
gi|430576663|gb|ELB15300.1| pseudouridine synthase [Enterococcus faecium E1623]
gi|430577945|gb|ELB16521.1| pseudouridine synthase [Enterococcus faecium E1626]
gi|430580325|gb|ELB18798.1| pseudouridine synthase [Enterococcus faecium E1627]
gi|430583526|gb|ELB21888.1| pseudouridine synthase [Enterococcus faecium E1630]
gi|430585099|gb|ELB23400.1| pseudouridine synthase [Enterococcus faecium E1634]
gi|430589354|gb|ELB27483.1| pseudouridine synthase [Enterococcus faecium E1731]
gi|430596758|gb|ELB34574.1| pseudouridine synthase [Enterococcus faecium E1904]
gi|430604664|gb|ELB42099.1| pseudouridine synthase [Enterococcus faecium E2134]
gi|430605470|gb|ELB42871.1| pseudouridine synthase [Enterococcus faecium E2071]
gi|430609818|gb|ELB46995.1| pseudouridine synthase [Enterococcus faecium E2297]
gi|430616622|gb|ELB53517.1| pseudouridine synthase [Enterococcus faecium E2883]
gi|430621512|gb|ELB58273.1| pseudouridine synthase [Enterococcus faecium E3346]
gi|430626055|gb|ELB62647.1| pseudouridine synthase [Enterococcus faecium E4215]
gi|430627984|gb|ELB64442.1| pseudouridine synthase [Enterococcus faecium E1321]
gi|430632961|gb|ELB69151.1| pseudouridine synthase [Enterococcus faecium E1644]
gi|430636783|gb|ELB72838.1| pseudouridine synthase [Enterococcus faecium E2369]
gi|430638530|gb|ELB74461.1| pseudouridine synthase [Enterococcus faecium E2560]
gi|430639119|gb|ELB75001.1| pseudouridine synthase [Enterococcus faecium E4389]
gi|430644978|gb|ELB80542.1| pseudouridine synthase [Enterococcus faecium E6045]
gi|445189478|gb|AGE31120.1| Ribosomal small subunit pseudouridine synthase A [Enterococcus
faecium NRRL B-2354]
Length = 239
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A + G + + + +EG
Sbjct: 93 REDLFPVGRLDKDTEGLLILTNDGVFAHQLLSPKKHVEKEYLAEVSGIMTEEDIRLFAEG 152
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I+G T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 153 LIIDGDEQTLPAKLQIDQVDQETETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 212
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + + + +L+
Sbjct: 213 KFWLPKDLNKGQYRPMTKEELE 234
>gi|293379060|ref|ZP_06625213.1| pseudouridylate synthase [Enterococcus faecium PC4.1]
gi|431050743|ref|ZP_19493412.1| pseudouridine synthase [Enterococcus faecium E1590]
gi|431753593|ref|ZP_19542262.1| pseudouridine synthase [Enterococcus faecium E2620]
gi|431758760|ref|ZP_19547383.1| pseudouridine synthase [Enterococcus faecium E3083]
gi|431764057|ref|ZP_19552603.1| pseudouridine synthase [Enterococcus faecium E3548]
gi|292642339|gb|EFF60496.1| pseudouridylate synthase [Enterococcus faecium PC4.1]
gi|430560281|gb|ELA99585.1| pseudouridine synthase [Enterococcus faecium E1590]
gi|430611626|gb|ELB48703.1| pseudouridine synthase [Enterococcus faecium E2620]
gi|430616575|gb|ELB53471.1| pseudouridine synthase [Enterococcus faecium E3083]
gi|430621361|gb|ELB58128.1| pseudouridine synthase [Enterococcus faecium E3548]
Length = 239
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 7/156 (4%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D LK D R LF VGRLD T GL+I+TNDG FA + P ++KEY+A +
Sbjct: 85 DLLKDQDYRED------LFPVGRLDKDTEGLLILTNDGIFAHQLLSPKKHVEKEYLAEVS 138
Query: 66 GAVNKRHLIAISEGTVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKN 124
G + + + +EG +I+G T P +++ + IR+++HEG+ H+V+ +VK
Sbjct: 139 GIMTEEDIRLFAEGLIIDGDEQTLPAKLQIDQVDQESETSIIRLILHEGKFHQVKRMVKA 198
Query: 125 AGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
G ++ LKR+R+G F LP DL G + + + +L+
Sbjct: 199 VGKEVLYLKRIRMGNFWLPKDLNKGQYRPMTKEELE 234
>gi|293570237|ref|ZP_06681306.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E980]
gi|430840946|ref|ZP_19458867.1| pseudouridine synthase [Enterococcus faecium E1007]
gi|431068940|ref|ZP_19494133.1| pseudouridine synthase [Enterococcus faecium E1604]
gi|431102167|ref|ZP_19496778.1| pseudouridine synthase [Enterococcus faecium E1613]
gi|431580913|ref|ZP_19520005.1| pseudouridine synthase [Enterococcus faecium E1861]
gi|431738047|ref|ZP_19526997.1| pseudouridine synthase [Enterococcus faecium E1972]
gi|431740475|ref|ZP_19529390.1| pseudouridine synthase [Enterococcus faecium E2039]
gi|291609644|gb|EFF38905.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E980]
gi|430494677|gb|ELA70912.1| pseudouridine synthase [Enterococcus faecium E1007]
gi|430567879|gb|ELB06946.1| pseudouridine synthase [Enterococcus faecium E1604]
gi|430570395|gb|ELB09356.1| pseudouridine synthase [Enterococcus faecium E1613]
gi|430594680|gb|ELB32644.1| pseudouridine synthase [Enterococcus faecium E1861]
gi|430598083|gb|ELB35843.1| pseudouridine synthase [Enterococcus faecium E1972]
gi|430603339|gb|ELB40869.1| pseudouridine synthase [Enterococcus faecium E2039]
Length = 238
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 76/125 (60%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+ + R++ VGRLD T+G++++TNDGDFAQ ++HP ++ K Y+A + G K L ++
Sbjct: 90 MVKERIYPVGRLDYDTSGILLLTNDGDFAQRLTHPKHEVDKVYVAKVKGIATKSMLAPLA 149
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+G IEG +P ++L P + + +HEGRNH+V+ +++ GL + LKR +
Sbjct: 150 KGIKIEGRKTSPAKFQILSVDPKTNHSIVELTIHEGRNHQVKNMLQAVGLPVQKLKREKY 209
Query: 138 GGFRL 142
G L
Sbjct: 210 GDLTL 214
>gi|257887727|ref|ZP_05667380.1| pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|257823781|gb|EEV50713.1| pseudouridine synthase [Enterococcus faecium 1,141,733]
Length = 238
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 76/125 (60%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+ + R++ VGRLD T+G++++TNDGDFAQ ++HP ++ K Y+A + G K L ++
Sbjct: 90 MVKERIYPVGRLDYDTSGILLLTNDGDFAQRLTHPKHEVDKVYVAKVKGIATKSMLAPLA 149
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+G IEG +P ++L P + + +HEGRNH+V+ +++ GL + LKR +
Sbjct: 150 KGIKIEGRKTSPAKFQILSVDPKTNHSIVELTIHEGRNHQVKNMLQAVGLPVQKLKREKY 209
Query: 138 GGFRL 142
G L
Sbjct: 210 GDLTL 214
>gi|331265750|ref|YP_004325380.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
oralis Uo5]
gi|326682422|emb|CBZ00039.1| ribosomal small subunit pseudouridine synthase A, 16S rRNA
pseudouridylate synthase and related pseudouridylate
synthases [Streptococcus oralis Uo5]
Length = 240
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K YIA + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYIARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|419781694|ref|ZP_14307510.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK610]
gi|383184002|gb|EIC76532.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK610]
Length = 240
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417915391|ref|ZP_12559004.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis bv. 2 str. SK95]
gi|342834377|gb|EGU68648.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis bv. 2 str. SK95]
Length = 240
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|315611769|ref|ZP_07886691.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis ATCC 49296]
gi|322375935|ref|ZP_08050446.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
C300]
gi|406586997|ref|ZP_11061913.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
GMD1S]
gi|417847204|ref|ZP_12493173.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK1073]
gi|419814169|ref|ZP_14338969.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
GMD2S]
gi|419819367|ref|ZP_14343113.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
GMD4S]
gi|315316184|gb|EFU64214.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis ATCC 49296]
gi|321279203|gb|EFX56245.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
C300]
gi|339457233|gb|EGP69811.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK1073]
gi|404455868|gb|EKA02656.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
GMD4S]
gi|404472161|gb|EKA16599.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
GMD2S]
gi|404473520|gb|EKA17855.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
GMD1S]
Length = 240
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|402309426|ref|ZP_10828419.1| pseudouridylate synthase [Eubacterium sp. AS15]
gi|400372393|gb|EJP25337.1| pseudouridylate synthase [Eubacterium sp. AS15]
Length = 232
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
P +F VGRLD +TGLIIVTNDGD A ++HPS ++K YIAT+DG +++ + SE
Sbjct: 91 PDISVFPVGRLDYDSTGLIIVTNDGDLANKIAHPSHHVKKTYIATLDGRLSEAQMKIFSE 150
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
G I+ P +EL D + +I ++EGRN ++R++++ G + LKR+ IG
Sbjct: 151 GVEIDSKKTLPAEIELY----DFSETQYKISIYEGRNRQIRKMIEVLGRNVRELKRISIG 206
Query: 139 GFRL 142
+L
Sbjct: 207 KIKL 210
>gi|227551154|ref|ZP_03981203.1| pseudouridylate synthase [Enterococcus faecium TX1330]
gi|257896222|ref|ZP_05675875.1| pseudouridine synthase [Enterococcus faecium Com12]
gi|257898859|ref|ZP_05678512.1| pseudouridine synthase [Enterococcus faecium Com15]
gi|293379537|ref|ZP_06625679.1| pseudouridylate synthase [Enterococcus faecium PC4.1]
gi|424765164|ref|ZP_18192567.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium TX1337RF]
gi|431034743|ref|ZP_19491620.1| pseudouridine synthase [Enterococcus faecium E1590]
gi|431751492|ref|ZP_19540180.1| pseudouridine synthase [Enterococcus faecium E2620]
gi|431756339|ref|ZP_19544971.1| pseudouridine synthase [Enterococcus faecium E3083]
gi|431761590|ref|ZP_19550152.1| pseudouridine synthase [Enterococcus faecium E3548]
gi|227179716|gb|EEI60688.1| pseudouridylate synthase [Enterococcus faecium TX1330]
gi|257832787|gb|EEV59208.1| pseudouridine synthase [Enterococcus faecium Com12]
gi|257836771|gb|EEV61845.1| pseudouridine synthase [Enterococcus faecium Com15]
gi|292641846|gb|EFF60014.1| pseudouridylate synthase [Enterococcus faecium PC4.1]
gi|402417186|gb|EJV49490.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium TX1337RF]
gi|430563458|gb|ELB02667.1| pseudouridine synthase [Enterococcus faecium E1590]
gi|430615273|gb|ELB52231.1| pseudouridine synthase [Enterococcus faecium E2620]
gi|430620193|gb|ELB56995.1| pseudouridine synthase [Enterococcus faecium E3083]
gi|430624282|gb|ELB60932.1| pseudouridine synthase [Enterococcus faecium E3548]
Length = 238
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 76/125 (60%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+ + R++ VGRLD T+G++++TNDGDFAQ ++HP ++ K Y+A + G K L ++
Sbjct: 90 MVKERIYPVGRLDYDTSGILLLTNDGDFAQRLTHPKHEVDKVYVAKVKGIATKSMLAPLA 149
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+G IEG +P ++L P + + +HEGRNH+V+ +++ GL + LKR +
Sbjct: 150 KGIKIEGRKTSPAKFQILSVDPKTNHSIVELTIHEGRNHQVKNMLQAVGLPVQKLKREKY 209
Query: 138 GGFRL 142
G L
Sbjct: 210 GDLTL 214
>gi|424908257|ref|ZP_18331641.1| pseudouridylate synthase [Enterococcus faecium R497]
gi|402928192|gb|EJX48080.1| pseudouridylate synthase [Enterococcus faecium R497]
Length = 175
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A + G + + + +EG
Sbjct: 29 REDLFPVGRLDKDTEGLLILTNDGVFAHQLLSPKKHVEKEYLAEVSGIMTEEDIRLFAEG 88
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I+G T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 89 LIIDGDEQTLPAKLQIDQVDQETETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 148
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + + + +L+
Sbjct: 149 KFWLPKDLNKGQYRPMTKEELE 170
>gi|358463775|ref|ZP_09173756.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. oral taxon 058 str. F0407]
gi|357067831|gb|EHI77915.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. oral taxon 058 str. F0407]
Length = 240
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LNL 213
>gi|422823017|ref|ZP_16871205.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK405]
gi|422826903|ref|ZP_16875082.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK678]
gi|422854959|ref|ZP_16901617.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1]
gi|324993667|gb|EGC25586.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK405]
gi|324995021|gb|EGC26934.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK678]
gi|327462936|gb|EGF09257.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1]
Length = 242
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R I++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTKPAVYEIIKVDPAKNRSVIQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|69248060|ref|ZP_00604605.1| Pseudouridine synthase, Rsu [Enterococcus faecium DO]
gi|257877984|ref|ZP_05657637.1| pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257881230|ref|ZP_05660883.1| pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257884895|ref|ZP_05664548.1| pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|257889817|ref|ZP_05669470.1| pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|257892245|ref|ZP_05671898.1| pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|260559035|ref|ZP_05831221.1| pseudouridine synthase [Enterococcus faecium C68]
gi|261207569|ref|ZP_05922254.1| pseudouridine synthase [Enterococcus faecium TC 6]
gi|289565081|ref|ZP_06445534.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium D344SRF]
gi|293556726|ref|ZP_06675289.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1039]
gi|293563384|ref|ZP_06677833.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1162]
gi|293568042|ref|ZP_06679380.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1071]
gi|294614860|ref|ZP_06694755.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1636]
gi|294618690|ref|ZP_06698224.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1679]
gi|294622981|ref|ZP_06701871.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium U0317]
gi|314939485|ref|ZP_07846719.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|314941116|ref|ZP_07848014.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|314948728|ref|ZP_07852100.1| conserved hypothetical protein [Enterococcus faecium TX0082]
gi|314951701|ref|ZP_07854744.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|314993952|ref|ZP_07859279.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
gi|314997516|ref|ZP_07862461.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|383328536|ref|YP_005354420.1| 16S rRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|389868279|ref|YP_006375702.1| pseudouridylate synthase [Enterococcus faecium DO]
gi|406580157|ref|ZP_11055375.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD4E]
gi|406582357|ref|ZP_11057482.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD3E]
gi|406584621|ref|ZP_11059646.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD2E]
gi|406589495|ref|ZP_11063930.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD1E]
gi|410937797|ref|ZP_11369656.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD5E]
gi|415894991|ref|ZP_11550487.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E4453]
gi|416134924|ref|ZP_11598385.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E4452]
gi|424786306|ref|ZP_18213096.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium V689]
gi|424796664|ref|ZP_18222362.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium S447]
gi|424821618|ref|ZP_18246645.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R501]
gi|424857053|ref|ZP_18281245.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R499]
gi|424868156|ref|ZP_18291917.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R497]
gi|424938702|ref|ZP_18354474.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R496]
gi|424954664|ref|ZP_18369552.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R494]
gi|424956876|ref|ZP_18371633.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R446]
gi|424960221|ref|ZP_18374759.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1986]
gi|424963089|ref|ZP_18377354.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1190]
gi|424967133|ref|ZP_18380865.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1140]
gi|424969821|ref|ZP_18383369.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1139]
gi|424973512|ref|ZP_18386789.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1137]
gi|424976249|ref|ZP_18389352.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1123]
gi|424980635|ref|ZP_18393417.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV99]
gi|424983425|ref|ZP_18396012.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV69]
gi|424987842|ref|ZP_18400194.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV38]
gi|424991255|ref|ZP_18403422.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV26]
gi|424994803|ref|ZP_18406725.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV168]
gi|424998486|ref|ZP_18410170.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV165]
gi|425001457|ref|ZP_18412972.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV161]
gi|425003652|ref|ZP_18415005.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV102]
gi|425009161|ref|ZP_18420193.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV1]
gi|425011597|ref|ZP_18422488.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium E422]
gi|425013349|ref|ZP_18424085.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium E417]
gi|425017157|ref|ZP_18427680.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium C621]
gi|425020488|ref|ZP_18430792.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium C497]
gi|425022919|ref|ZP_18433072.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium C1904]
gi|425031882|ref|ZP_18436979.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 515]
gi|425036849|ref|ZP_18441564.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 514]
gi|425038768|ref|ZP_18443358.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 513]
gi|425043815|ref|ZP_18448017.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 511]
gi|425045661|ref|ZP_18449748.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 510]
gi|425049490|ref|ZP_18453337.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 509]
gi|425051406|ref|ZP_18455072.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 506]
gi|425059348|ref|ZP_18462694.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 504]
gi|425062167|ref|ZP_18465338.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 503]
gi|427395191|ref|ZP_18888113.1| pseudouridine synthase [Enterococcus durans FB129-CNAB-4]
gi|430820420|ref|ZP_19439052.1| pseudouridine synthase [Enterococcus faecium E0045]
gi|430821933|ref|ZP_19440514.1| pseudouridine synthase [Enterococcus faecium E0120]
gi|430825053|ref|ZP_19443264.1| pseudouridine synthase [Enterococcus faecium E0164]
gi|430828320|ref|ZP_19446442.1| pseudouridine synthase [Enterococcus faecium E0269]
gi|430830270|ref|ZP_19448328.1| pseudouridine synthase [Enterococcus faecium E0333]
gi|430833546|ref|ZP_19451558.1| pseudouridine synthase [Enterococcus faecium E0679]
gi|430836250|ref|ZP_19454233.1| pseudouridine synthase [Enterococcus faecium E0680]
gi|430838919|ref|ZP_19456862.1| pseudouridine synthase [Enterococcus faecium E0688]
gi|430844542|ref|ZP_19462440.1| pseudouridine synthase [Enterococcus faecium E1050]
gi|430846523|ref|ZP_19464382.1| pseudouridine synthase [Enterococcus faecium E1133]
gi|430850122|ref|ZP_19467888.1| pseudouridine synthase [Enterococcus faecium E1185]
gi|430852821|ref|ZP_19470552.1| pseudouridine synthase [Enterococcus faecium E1258]
gi|430854371|ref|ZP_19472084.1| pseudouridine synthase [Enterococcus faecium E1392]
gi|430858594|ref|ZP_19476221.1| pseudouridine synthase [Enterococcus faecium E1552]
gi|430861931|ref|ZP_19479283.1| pseudouridine synthase [Enterococcus faecium E1573]
gi|430864417|ref|ZP_19480339.1| pseudouridine synthase [Enterococcus faecium E1574]
gi|430870367|ref|ZP_19483222.1| pseudouridine synthase [Enterococcus faecium E1575]
gi|430958927|ref|ZP_19486791.1| pseudouridine synthase [Enterococcus faecium E1576]
gi|431010102|ref|ZP_19489627.1| pseudouridine synthase [Enterococcus faecium E1578]
gi|431193726|ref|ZP_19500233.1| pseudouridine synthase [Enterococcus faecium E1620]
gi|431228344|ref|ZP_19501485.1| pseudouridine synthase [Enterococcus faecium E1622]
gi|431259195|ref|ZP_19505372.1| pseudouridine synthase [Enterococcus faecium E1623]
gi|431295489|ref|ZP_19507377.1| pseudouridine synthase [Enterococcus faecium E1626]
gi|431503069|ref|ZP_19515305.1| pseudouridine synthase [Enterococcus faecium E1634]
gi|431539178|ref|ZP_19517682.1| pseudouridine synthase [Enterococcus faecium E1731]
gi|431626819|ref|ZP_19523058.1| pseudouridine synthase [Enterococcus faecium E1904]
gi|431743446|ref|ZP_19532325.1| pseudouridine synthase [Enterococcus faecium E2071]
gi|431745728|ref|ZP_19534567.1| pseudouridine synthase [Enterococcus faecium E2134]
gi|431748763|ref|ZP_19537518.1| pseudouridine synthase [Enterococcus faecium E2297]
gi|431754374|ref|ZP_19543035.1| pseudouridine synthase [Enterococcus faecium E2883]
gi|431766278|ref|ZP_19554771.1| pseudouridine synthase [Enterococcus faecium E4215]
gi|431766742|ref|ZP_19555203.1| pseudouridine synthase [Enterococcus faecium E1321]
gi|431770358|ref|ZP_19558758.1| pseudouridine synthase [Enterococcus faecium E1644]
gi|431772879|ref|ZP_19561215.1| pseudouridine synthase [Enterococcus faecium E2369]
gi|431776253|ref|ZP_19564520.1| pseudouridine synthase [Enterococcus faecium E2560]
gi|431778291|ref|ZP_19566502.1| pseudouridine synthase [Enterococcus faecium E4389]
gi|431782353|ref|ZP_19570488.1| pseudouridine synthase [Enterococcus faecium E6012]
gi|431785262|ref|ZP_19573288.1| pseudouridine synthase [Enterococcus faecium E6045]
gi|447912870|ref|YP_007394282.1| Ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium NRRL B-2354]
gi|68194579|gb|EAN09070.1| Pseudouridine synthase, Rsu [Enterococcus faecium DO]
gi|257812212|gb|EEV40970.1| pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257816888|gb|EEV44216.1| pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257820733|gb|EEV47881.1| pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|257826177|gb|EEV52803.1| pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|257828624|gb|EEV55231.1| pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|260074792|gb|EEW63108.1| pseudouridine synthase [Enterococcus faecium C68]
gi|260077952|gb|EEW65658.1| pseudouridine synthase [Enterococcus faecium TC 6]
gi|289163088|gb|EFD10935.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium D344SRF]
gi|291589263|gb|EFF21073.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1071]
gi|291592322|gb|EFF23936.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1636]
gi|291595073|gb|EFF26416.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1679]
gi|291597609|gb|EFF28770.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium U0317]
gi|291601058|gb|EFF31347.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1039]
gi|291604645|gb|EFF34130.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E1162]
gi|313588427|gb|EFR67272.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|313591554|gb|EFR70399.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
gi|313596165|gb|EFR75010.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|313600117|gb|EFR78960.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|313641287|gb|EFS05867.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|313644794|gb|EFS09374.1| conserved hypothetical protein [Enterococcus faecium TX0082]
gi|364091885|gb|EHM34308.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E4453]
gi|364092354|gb|EHM34735.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium E4452]
gi|378938230|gb|AFC63302.1| 16S rRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|388533528|gb|AFK58720.1| pseudouridylate synthase [Enterococcus faecium DO]
gi|402922670|gb|EJX43025.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium S447]
gi|402923352|gb|EJX43649.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium V689]
gi|402925736|gb|EJX45843.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R501]
gi|402929478|gb|EJX49232.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R499]
gi|402936160|gb|EJX55357.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R494]
gi|402936431|gb|EJX55612.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R496]
gi|402937326|gb|EJX56444.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R497]
gi|402944880|gb|EJX63269.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium R446]
gi|402948583|gb|EJX66707.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1986]
gi|402950203|gb|EJX68212.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1190]
gi|402954974|gb|EJX72548.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1140]
gi|402958470|gb|EJX75783.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1137]
gi|402963154|gb|EJX80040.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1139]
gi|402966081|gb|EJX82752.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV99]
gi|402970052|gb|EJX86418.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium P1123]
gi|402971580|gb|EJX87845.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV69]
gi|402973459|gb|EJX89585.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV38]
gi|402977354|gb|EJX93177.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV26]
gi|402979015|gb|EJX94709.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV168]
gi|402982921|gb|EJX98354.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV165]
gi|402986648|gb|EJY01762.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV161]
gi|402990386|gb|EJY05259.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV1]
gi|402991438|gb|EJY06225.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium ERV102]
gi|402996335|gb|EJY10727.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium E422]
gi|403001351|gb|EJY15412.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium E417]
gi|403004921|gb|EJY18677.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium C621]
gi|403009183|gb|EJY22647.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium C497]
gi|403011669|gb|EJY24963.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium C1904]
gi|403013149|gb|EJY26276.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 514]
gi|403014502|gb|EJY27498.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 515]
gi|403017858|gb|EJY30581.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 511]
gi|403018629|gb|EJY31297.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 513]
gi|403026584|gb|EJY38547.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 510]
gi|403027350|gb|EJY39243.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 509]
gi|403035453|gb|EJY46841.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 504]
gi|403037674|gb|EJY48938.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 506]
gi|403039284|gb|EJY50447.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 503]
gi|404454536|gb|EKA01464.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD4E]
gi|404458209|gb|EKA04656.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD3E]
gi|404463851|gb|EKA09430.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD2E]
gi|404470765|gb|EKA15360.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD1E]
gi|410733930|gb|EKQ75852.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
GMD5E]
gi|425724327|gb|EKU87211.1| pseudouridine synthase [Enterococcus durans FB129-CNAB-4]
gi|430439551|gb|ELA49887.1| pseudouridine synthase [Enterococcus faecium E0045]
gi|430443765|gb|ELA53727.1| pseudouridine synthase [Enterococcus faecium E0120]
gi|430446554|gb|ELA56222.1| pseudouridine synthase [Enterococcus faecium E0164]
gi|430482872|gb|ELA59971.1| pseudouridine synthase [Enterococcus faecium E0333]
gi|430483615|gb|ELA60683.1| pseudouridine synthase [Enterococcus faecium E0269]
gi|430486287|gb|ELA63146.1| pseudouridine synthase [Enterococcus faecium E0679]
gi|430488607|gb|ELA65269.1| pseudouridine synthase [Enterococcus faecium E0680]
gi|430491320|gb|ELA67793.1| pseudouridine synthase [Enterococcus faecium E0688]
gi|430497132|gb|ELA73191.1| pseudouridine synthase [Enterococcus faecium E1050]
gi|430536154|gb|ELA76531.1| pseudouridine synthase [Enterococcus faecium E1185]
gi|430538970|gb|ELA79239.1| pseudouridine synthase [Enterococcus faecium E1133]
gi|430541655|gb|ELA81800.1| pseudouridine synthase [Enterococcus faecium E1258]
gi|430545221|gb|ELA85207.1| pseudouridine synthase [Enterococcus faecium E1552]
gi|430548030|gb|ELA87935.1| pseudouridine synthase [Enterococcus faecium E1392]
gi|430549222|gb|ELA89054.1| pseudouridine synthase [Enterococcus faecium E1573]
gi|430553964|gb|ELA93638.1| pseudouridine synthase [Enterococcus faecium E1574]
gi|430556612|gb|ELA96109.1| pseudouridine synthase [Enterococcus faecium E1576]
gi|430559020|gb|ELA98402.1| pseudouridine synthase [Enterococcus faecium E1575]
gi|430560597|gb|ELA99893.1| pseudouridine synthase [Enterococcus faecium E1578]
gi|430572136|gb|ELB11002.1| pseudouridine synthase [Enterococcus faecium E1620]
gi|430574646|gb|ELB13409.1| pseudouridine synthase [Enterococcus faecium E1622]
gi|430577290|gb|ELB15895.1| pseudouridine synthase [Enterococcus faecium E1623]
gi|430581579|gb|ELB20024.1| pseudouridine synthase [Enterococcus faecium E1626]
gi|430587692|gb|ELB25913.1| pseudouridine synthase [Enterococcus faecium E1634]
gi|430594441|gb|ELB32410.1| pseudouridine synthase [Enterococcus faecium E1731]
gi|430603073|gb|ELB40616.1| pseudouridine synthase [Enterococcus faecium E1904]
gi|430606878|gb|ELB44215.1| pseudouridine synthase [Enterococcus faecium E2071]
gi|430609934|gb|ELB47106.1| pseudouridine synthase [Enterococcus faecium E2134]
gi|430613089|gb|ELB50112.1| pseudouridine synthase [Enterococcus faecium E2297]
gi|430618968|gb|ELB55796.1| pseudouridine synthase [Enterococcus faecium E2883]
gi|430627054|gb|ELB63590.1| pseudouridine synthase [Enterococcus faecium E4215]
gi|430631977|gb|ELB68268.1| pseudouridine synthase [Enterococcus faecium E1321]
gi|430635285|gb|ELB71381.1| pseudouridine synthase [Enterococcus faecium E1644]
gi|430637395|gb|ELB73411.1| pseudouridine synthase [Enterococcus faecium E2369]
gi|430641587|gb|ELB77388.1| pseudouridine synthase [Enterococcus faecium E2560]
gi|430643837|gb|ELB79540.1| pseudouridine synthase [Enterococcus faecium E4389]
gi|430647688|gb|ELB83129.1| pseudouridine synthase [Enterococcus faecium E6012]
gi|430647749|gb|ELB83188.1| pseudouridine synthase [Enterococcus faecium E6045]
gi|445188579|gb|AGE30221.1| Ribosomal large subunit pseudouridine synthase B [Enterococcus
faecium NRRL B-2354]
Length = 238
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 76/125 (60%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+ + R++ VGRLD T+G++++TNDGDFAQ ++HP ++ K Y+A + G K L ++
Sbjct: 90 MVKERIYPVGRLDYDTSGILLLTNDGDFAQRLTHPKHEVDKVYVAKVKGIATKSMLAPLT 149
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+G IEG +P ++L P + + +HEGRNH+V+ +++ GL + LKR +
Sbjct: 150 KGIKIEGRKTSPAKFQILSVDPKTNHSIVELTIHEGRNHQVKNMLQAVGLPVQKLKREKY 209
Query: 138 GGFRL 142
G L
Sbjct: 210 GDLTL 214
>gi|385260921|ref|ZP_10039059.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. SK140]
gi|385190194|gb|EIF37643.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. SK140]
Length = 241
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|257126979|ref|YP_003165093.1| RNA-binding S4 domain-containing protein [Leptotrichia buccalis
C-1013-b]
gi|257050918|gb|ACV40102.1| RNA-binding S4 domain protein [Leptotrichia buccalis C-1013-b]
Length = 228
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 7/144 (4%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
R RLFT GRLD T GLII++NDG+ V HP KL K YIA + + + + A+
Sbjct: 89 SRARLFTYGRLDFMTEGLIIISNDGEVYNHVMHPRKKLYKSYIAKVSREIEDKDIEALQH 148
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
G VI+G P V+ I + +RI + EGRN ++R++++ G + SLKR+++G
Sbjct: 149 GVVIDGKRTAPAKVK------KIDKKELRIAIFEGRNRQIRKMLETLGYNVNSLKRIKVG 202
Query: 139 GFRLPSDLGIGMHVELKQSDLKLM 162
L +L +G + L + ++K +
Sbjct: 203 ELTL-GNLQVGEYRALNEDEIKYL 225
>gi|409387383|ref|ZP_11239613.1| Ribosomal large subunit pseudouridine synthase B [Lactococcus
raffinolactis 4877]
gi|399205484|emb|CCK20528.1| Ribosomal large subunit pseudouridine synthase B [Lactococcus
raffinolactis 4877]
Length = 238
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 78/121 (64%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GLI++TNDG+FA ++HP +++K YIA ++G NK +L +++G
Sbjct: 93 RIYPVGRLDWDTSGLILMTNDGEFANLMTHPRHEIEKVYIAKVEGQANKENLRPLTQGVK 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V +++ + +++ +HEGRNH+V+++ + GL + L R++ G
Sbjct: 153 IDGRKTKPAVYQIIKQDISTKKSVVQLTIHEGRNHQVKKMFEAVGLPVQKLSRVQYGTLD 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|425053975|ref|ZP_18457490.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 505]
gi|403036899|gb|EJY48232.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecium 505]
Length = 238
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 76/125 (60%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+ + R++ VGRLD T+G++++TNDGDFAQ ++HP ++ K Y+A + G K L ++
Sbjct: 90 MVKERIYPVGRLDYDTSGILLLTNDGDFAQRLTHPKHEVDKVYVAKVKGIATKSMLAPLA 149
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+G IEG +P ++L P + + +HEGRNH+V+ +++ GL + LKR +
Sbjct: 150 KGIKIEGRKTSPAKFQILSVDPKTNHSIVELTIHEGRNHQVKNMLQAVGLPVQKLKREKY 209
Query: 138 GGFRL 142
G L
Sbjct: 210 GDLTL 214
>gi|257900337|ref|ZP_05679990.1| pseudouridine synthase [Enterococcus faecium Com15]
gi|257838249|gb|EEV63323.1| pseudouridine synthase [Enterococcus faecium Com15]
Length = 255
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A + G + + + +EG
Sbjct: 109 REDLFPVGRLDKDTEGLLILTNDGVFAHQLLSPKKHVEKEYLAEVSGIMTEEDIRLFAEG 168
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I+G T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 169 LIIDGDEQTLPAKLQIDQVDQESETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 228
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + + + +L+
Sbjct: 229 NFCLPKDLNRGQYRPMTKEELE 250
>gi|431436387|ref|ZP_19513086.1| pseudouridine synthase [Enterococcus faecium E1630]
gi|431758852|ref|ZP_19547473.1| pseudouridine synthase [Enterococcus faecium E3346]
gi|430586984|gb|ELB25218.1| pseudouridine synthase [Enterococcus faecium E1630]
gi|430626979|gb|ELB63522.1| pseudouridine synthase [Enterococcus faecium E3346]
Length = 238
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 76/125 (60%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+ + R++ VGRLD T+G++++TNDGDFAQ ++HP ++ K Y+A + G K L ++
Sbjct: 90 MVKERIYPVGRLDYDTSGILLLTNDGDFAQRLTHPKHEVDKVYVAKVKGIATKSMLAPLT 149
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+G IEG +P ++L P + + +HEGRNH+V+ +++ GL + LKR +
Sbjct: 150 KGIKIEGRKTSPAKFQILSVYPKTNHSIVELTIHEGRNHQVKNMLQAVGLPVQKLKREKY 209
Query: 138 GGFRL 142
G L
Sbjct: 210 GDLTL 214
>gi|260890551|ref|ZP_05901814.1| RNA pseudouridine synthase [Leptotrichia hofstadii F0254]
gi|260859793|gb|EEX74293.1| RNA pseudouridine synthase [Leptotrichia hofstadii F0254]
Length = 228
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 7/144 (4%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
R RLFT GRLD T GLII++NDG+ V HP KL K YIA + + + + A+
Sbjct: 89 SRARLFTYGRLDFMTEGLIIISNDGEVYNHVMHPRKKLYKSYIAKVSREIEDKDIEALQH 148
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
G VI+G P V+ I + +RI + EGRN ++R++++ G + SLKR+++G
Sbjct: 149 GVVIDGKRTAPAKVK------KIDKKELRIAIFEGRNRQIRKMLETLGYNVNSLKRIKVG 202
Query: 139 GFRLPSDLGIGMHVELKQSDLKLM 162
L +L +G + L + ++K +
Sbjct: 203 ELTL-GNLQVGEYRALNEDEIKYL 225
>gi|421218526|ref|ZP_15675420.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070335]
gi|395583295|gb|EJG43744.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070335]
Length = 236
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|335029419|ref|ZP_08522926.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
infantis SK1076]
gi|334268716|gb|EGL87148.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
infantis SK1076]
Length = 240
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|157149683|ref|YP_001450946.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
gordonii str. Challis substr. CH1]
gi|157074477|gb|ABV09160.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
gordonii str. Challis substr. CH1]
Length = 242
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I G P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VEINGKKTKPAVYEIIKVDPVKNRSVVQLTIHEGRNHQVKKMFQAVGLEVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|431783585|ref|ZP_19571684.1| pseudouridine synthase [Enterococcus faecium E6012]
gi|430644864|gb|ELB80440.1| pseudouridine synthase [Enterococcus faecium E6012]
Length = 239
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A + G + + + +EG
Sbjct: 93 REDLFPVGRLDKDTEGLLILTNDGVFAHQLLSPKKHVEKEYLAEVSGIMTEEDIRLFAEG 152
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I+G T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 153 LIIDGDEQTLPAKLQIDRVDQETETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 212
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + + + +L+
Sbjct: 213 KFWLPKDLNKGQYRPMTKEELE 234
>gi|392989876|ref|YP_006488469.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
hirae ATCC 9790]
gi|392337296|gb|AFM71578.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
hirae ATCC 9790]
Length = 238
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++++TNDGDFAQ ++HP ++ K Y+A + G K L +++G
Sbjct: 92 KERIYPVGRLDYDTSGILLLTNDGDFAQRLTHPKHEVDKVYVAKVKGIATKTMLSPLTKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P ++L P + + +HEGRNH+V+ +++ GL + LKR + G
Sbjct: 152 IKIEGKRTSPARYQILSVDPKTNHSIVELTIHEGRNHQVKNMLQAVGLPVQKLKREKYGD 211
Query: 140 FRL 142
L
Sbjct: 212 LTL 214
>gi|405760276|ref|YP_006700872.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPNA45]
gi|404277165|emb|CCM07669.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPNA45]
Length = 240
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|422864913|ref|ZP_16911538.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1058]
gi|327490097|gb|EGF21885.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1058]
Length = 242
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTQPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|322387120|ref|ZP_08060731.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
infantis ATCC 700779]
gi|419844070|ref|ZP_14367371.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
infantis ATCC 700779]
gi|421276783|ref|ZP_15727603.1| pseudouridine synthase [Streptococcus mitis SPAR10]
gi|321142107|gb|EFX37601.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
infantis ATCC 700779]
gi|385702186|gb|EIG39335.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
infantis ATCC 700779]
gi|395876064|gb|EJG87140.1| pseudouridine synthase [Streptococcus mitis SPAR10]
Length = 241
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|422848075|ref|ZP_16894751.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK115]
gi|325690957|gb|EGD32957.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK115]
Length = 242
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTQPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|307709770|ref|ZP_07646221.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis SK564]
gi|307619472|gb|EFN98597.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis SK564]
Length = 240
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRAVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|15901702|ref|NP_346306.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae TIGR4]
gi|15903731|ref|NP_359281.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae R6]
gi|111657282|ref|ZP_01408047.1| hypothetical protein SpneT_02001499 [Streptococcus pneumoniae
TIGR4]
gi|116515785|ref|YP_817104.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae D39]
gi|148984326|ref|ZP_01817621.1| hypothetical protein CGSSp3BS71_03857 [Streptococcus pneumoniae
SP3-BS71]
gi|148989667|ref|ZP_01820999.1| hypothetical protein CGSSp6BS73_00460 [Streptococcus pneumoniae
SP6-BS73]
gi|148993332|ref|ZP_01822872.1| hypothetical protein CGSSp9BS68_07037 [Streptococcus pneumoniae
SP9-BS68]
gi|148998738|ref|ZP_01826176.1| hypothetical protein CGSSp11BS70_11759 [Streptococcus pneumoniae
SP11-BS70]
gi|149003915|ref|ZP_01828729.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SP14-BS69]
gi|149006471|ref|ZP_01830170.1| segregation and condensation protein B [Streptococcus pneumoniae
SP18-BS74]
gi|149011261|ref|ZP_01832508.1| segregation and condensation protein B [Streptococcus pneumoniae
SP19-BS75]
gi|149024998|ref|ZP_01836378.1| hypothetical protein CGSSp23BS72_10018 [Streptococcus pneumoniae
SP23-BS72]
gi|168483406|ref|ZP_02708358.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CDC1873-00]
gi|168489848|ref|ZP_02714047.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SP195]
gi|168491811|ref|ZP_02715954.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CDC0288-04]
gi|168494210|ref|ZP_02718353.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CDC3059-06]
gi|168574937|ref|ZP_02720900.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae MLV-016]
gi|169833469|ref|YP_001695240.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae Hungary19A-6]
gi|182684817|ref|YP_001836564.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CGSP14]
gi|194398119|ref|YP_002038463.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae G54]
gi|221232609|ref|YP_002511763.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae ATCC 700669]
gi|225855307|ref|YP_002736819.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae JJA]
gi|225859636|ref|YP_002741146.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 70585]
gi|225861667|ref|YP_002743176.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae Taiwan19F-14]
gi|237651140|ref|ZP_04525392.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CCRI 1974]
gi|237820920|ref|ZP_04596765.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CCRI 1974M2]
gi|270292159|ref|ZP_06198374.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
M143]
gi|289167211|ref|YP_003445478.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
mitis B6]
gi|298230346|ref|ZP_06964027.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254732|ref|ZP_06978318.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298503601|ref|YP_003725541.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|303254617|ref|ZP_07340719.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae BS455]
gi|303258820|ref|ZP_07344800.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SP-BS293]
gi|303261983|ref|ZP_07347929.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SP14-BS292]
gi|303263846|ref|ZP_07349768.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae BS397]
gi|303265619|ref|ZP_07351518.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae BS457]
gi|303269887|ref|ZP_07355630.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae BS458]
gi|307068487|ref|YP_003877453.1| 16S rRNA uridine-516 pseudouridylate synthase-like pseudouridylate
synthase [Streptococcus pneumoniae AP200]
gi|307128069|ref|YP_003880100.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 670-6B]
gi|307705578|ref|ZP_07642430.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis SK597]
gi|307707612|ref|ZP_07644093.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis NCTC 12261]
gi|322377639|ref|ZP_08052129.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
M334]
gi|387627050|ref|YP_006063226.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae INV104]
gi|387758064|ref|YP_006065043.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae OXC141]
gi|387759976|ref|YP_006066954.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae INV200]
gi|387788890|ref|YP_006253958.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae ST556]
gi|406576897|ref|ZP_11052520.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
GMD6S]
gi|410477226|ref|YP_006743985.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae gamPNI0373]
gi|414159125|ref|ZP_11415416.1| pseudouridine synthase [Streptococcus sp. F0441]
gi|415700360|ref|ZP_11458062.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 459-5]
gi|415748293|ref|ZP_11476426.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SV35]
gi|415753075|ref|ZP_11480057.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SV36]
gi|417313327|ref|ZP_12100039.1| hypothetical protein SPAR5_1727 [Streptococcus pneumoniae GA04375]
gi|417677583|ref|ZP_12326989.1| hypothetical protein SPAR148_1785 [Streptococcus pneumoniae
GA17545]
gi|417679832|ref|ZP_12329228.1| hypothetical protein SPAR50_1869 [Streptococcus pneumoniae GA17570]
gi|417687338|ref|ZP_12336611.1| hypothetical protein SPAR68_1901 [Streptococcus pneumoniae GA41301]
gi|417694735|ref|ZP_12343922.1| hypothetical protein SPAR120_1791 [Streptococcus pneumoniae
GA47901]
gi|417697031|ref|ZP_12346209.1| hypothetical protein SPAR93_1907 [Streptococcus pneumoniae GA47368]
gi|417699248|ref|ZP_12348419.1| hypothetical protein SPAR69_1806 [Streptococcus pneumoniae GA41317]
gi|417924597|ref|ZP_12568036.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK569]
gi|418074721|ref|ZP_12711970.1| hypothetical protein SPAR19_1862 [Streptococcus pneumoniae GA11184]
gi|418077092|ref|ZP_12714324.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47502]
gi|418079315|ref|ZP_12716537.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 4027-06]
gi|418081511|ref|ZP_12718721.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 6735-05]
gi|418083658|ref|ZP_12720855.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44288]
gi|418085840|ref|ZP_12723019.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47281]
gi|418087556|ref|ZP_12724724.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47033]
gi|418090244|ref|ZP_12727397.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA43265]
gi|418092468|ref|ZP_12729608.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44452]
gi|418094644|ref|ZP_12731771.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA49138]
gi|418096997|ref|ZP_12734107.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA16531]
gi|418099209|ref|ZP_12736305.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 6901-05]
gi|418101309|ref|ZP_12738392.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 7286-06]
gi|418103557|ref|ZP_12740629.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP070]
gi|418106003|ref|ZP_12743059.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44500]
gi|418108313|ref|ZP_12745350.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA41410]
gi|418110834|ref|ZP_12747853.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA49447]
gi|418113200|ref|ZP_12750199.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA41538]
gi|418115398|ref|ZP_12752384.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 5787-06]
gi|418117558|ref|ZP_12754527.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 6963-05]
gi|418119306|ref|ZP_12756263.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA18523]
gi|418121913|ref|ZP_12758856.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44194]
gi|418124222|ref|ZP_12761152.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44378]
gi|418126515|ref|ZP_12763420.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44511]
gi|418128759|ref|ZP_12765651.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP170]
gi|418131030|ref|ZP_12767913.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA07643]
gi|418133314|ref|ZP_12770184.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA11304]
gi|418135585|ref|ZP_12772439.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA11426]
gi|418137967|ref|ZP_12774804.1| hypothetical protein SPAR24_1867 [Streptococcus pneumoniae GA11663]
gi|418140201|ref|ZP_12777026.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA13338]
gi|418142369|ref|ZP_12779181.1| hypothetical protein SPAR30_1756 [Streptococcus pneumoniae GA13455]
gi|418145020|ref|ZP_12781814.1| hypothetical protein SPAR31_2227 [Streptococcus pneumoniae GA13494]
gi|418147124|ref|ZP_12783900.1| hypothetical protein SPAR32_1897 [Streptococcus pneumoniae GA13637]
gi|418149217|ref|ZP_12785979.1| hypothetical protein SPAR34_1710 [Streptococcus pneumoniae GA13856]
gi|418151357|ref|ZP_12788103.1| hypothetical protein SPAR37_1771 [Streptococcus pneumoniae GA14798]
gi|418153599|ref|ZP_12790337.1| hypothetical protein SPAR38_1844 [Streptococcus pneumoniae GA16121]
gi|418155842|ref|ZP_12792568.1| hypothetical protein SPAR39_1804 [Streptococcus pneumoniae GA16242]
gi|418158168|ref|ZP_12794884.1| hypothetical protein SPAR41_1952 [Streptococcus pneumoniae GA16833]
gi|418160603|ref|ZP_12797302.1| hypothetical protein SPAR43_1945 [Streptococcus pneumoniae GA17227]
gi|418162904|ref|ZP_12799585.1| hypothetical protein SPAR49_1896 [Streptococcus pneumoniae GA17328]
gi|418165149|ref|ZP_12801817.1| hypothetical protein SPAR45_1786 [Streptococcus pneumoniae GA17371]
gi|418167494|ref|ZP_12804148.1| hypothetical protein SPAR52_1919 [Streptococcus pneumoniae GA17971]
gi|418169967|ref|ZP_12806608.1| hypothetical protein SPAR56_2063 [Streptococcus pneumoniae GA19077]
gi|418171988|ref|ZP_12808612.1| hypothetical protein SPAR58_1774 [Streptococcus pneumoniae GA19451]
gi|418174291|ref|ZP_12810902.1| hypothetical protein SPAR67_1897 [Streptococcus pneumoniae GA41277]
gi|418176653|ref|ZP_12813244.1| hypothetical protein SPAR71_1889 [Streptococcus pneumoniae GA41437]
gi|418178994|ref|ZP_12815575.1| hypothetical protein SPAR73_1927 [Streptococcus pneumoniae GA41565]
gi|418181233|ref|ZP_12817802.1| hypothetical protein SPAR74_1846 [Streptococcus pneumoniae GA41688]
gi|418183404|ref|ZP_12819961.1| hypothetical protein SPAR78_1812 [Streptococcus pneumoniae GA43380]
gi|418187859|ref|ZP_12824382.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47360]
gi|418190102|ref|ZP_12826614.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47373]
gi|418192301|ref|ZP_12828803.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47388]
gi|418194415|ref|ZP_12830904.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47439]
gi|418196505|ref|ZP_12832981.1| hypothetical protein SPAR103_1702 [Streptococcus pneumoniae
GA47688]
gi|418198682|ref|ZP_12835140.1| hypothetical protein SPAR106_1771 [Streptococcus pneumoniae
GA47778]
gi|418200837|ref|ZP_12837279.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47976]
gi|418203094|ref|ZP_12839521.1| hypothetical protein SPAR115_1814 [Streptococcus pneumoniae
GA52306]
gi|418215054|ref|ZP_12841788.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA54644]
gi|418217330|ref|ZP_12844009.1| hypothetical protein SPAR147_1802 [Streptococcus pneumoniae
Netherlands15B-37]
gi|418219584|ref|ZP_12846249.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP127]
gi|418221896|ref|ZP_12848549.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47751]
gi|418224046|ref|ZP_12850686.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 5185-06]
gi|418226239|ref|ZP_12852866.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP112]
gi|418228357|ref|ZP_12854974.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 3063-00]
gi|418230662|ref|ZP_12857261.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP01]
gi|418232860|ref|ZP_12859446.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA07228]
gi|418235058|ref|ZP_12861634.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA08780]
gi|418237314|ref|ZP_12863880.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA19690]
gi|418239381|ref|ZP_12865932.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|418966532|ref|ZP_13518263.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK616]
gi|418976646|ref|ZP_13524506.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK575]
gi|419423321|ref|ZP_13963534.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA43264]
gi|419425789|ref|ZP_13965985.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 7533-05]
gi|419427903|ref|ZP_13968084.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 5652-06]
gi|419430047|ref|ZP_13970211.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA11856]
gi|419432262|ref|ZP_13972394.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP05]
gi|419434148|ref|ZP_13974266.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA40183]
gi|419436642|ref|ZP_13976729.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 8190-05]
gi|419438892|ref|ZP_13978960.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA13499]
gi|419441072|ref|ZP_13981115.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA40410]
gi|419445358|ref|ZP_13985373.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA19923]
gi|419447512|ref|ZP_13987517.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 7879-04]
gi|419449635|ref|ZP_13989631.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 4075-00]
gi|419450773|ref|ZP_13990759.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP02]
gi|419453625|ref|ZP_13993595.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP03]
gi|419456228|ref|ZP_13996184.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP04]
gi|419458433|ref|ZP_13998375.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA02254]
gi|419460675|ref|ZP_14000603.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA02270]
gi|419463017|ref|ZP_14002920.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA02714]
gi|419464999|ref|ZP_14004890.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA04175]
gi|419467469|ref|ZP_14007350.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA05248]
gi|419469683|ref|ZP_14009550.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA06083]
gi|419471754|ref|ZP_14011613.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA07914]
gi|419473946|ref|ZP_14013794.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA13430]
gi|419476200|ref|ZP_14016036.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA14688]
gi|419478519|ref|ZP_14018342.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA18068]
gi|419480684|ref|ZP_14020488.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA19101]
gi|419485078|ref|ZP_14024853.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA43257]
gi|419487342|ref|ZP_14027104.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44128]
gi|419489314|ref|ZP_14029063.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44386]
gi|419491752|ref|ZP_14031489.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47179]
gi|419493980|ref|ZP_14033705.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47210]
gi|419496046|ref|ZP_14035763.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47461]
gi|419498251|ref|ZP_14037957.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47522]
gi|419500387|ref|ZP_14040081.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47597]
gi|419502499|ref|ZP_14042183.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47628]
gi|419504593|ref|ZP_14044261.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47760]
gi|419506742|ref|ZP_14046403.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA49194]
gi|419508954|ref|ZP_14048605.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA49542]
gi|419513245|ref|ZP_14052877.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA05578]
gi|419515374|ref|ZP_14054999.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae England14-9]
gi|419517450|ref|ZP_14057065.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA02506]
gi|419519562|ref|ZP_14059168.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA08825]
gi|419521816|ref|ZP_14061411.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05245]
gi|419524199|ref|ZP_14063772.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13723]
gi|419526572|ref|ZP_14066129.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA14373]
gi|419528188|ref|ZP_14067731.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17719]
gi|419533051|ref|ZP_14072566.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47794]
gi|419535360|ref|ZP_14074859.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17457]
gi|419765938|ref|ZP_14292160.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK579]
gi|421209633|ref|ZP_15666645.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070005]
gi|421211715|ref|ZP_15668697.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070035]
gi|421220941|ref|ZP_15677779.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070425]
gi|421223195|ref|ZP_15679977.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070531]
gi|421225706|ref|ZP_15682443.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070768]
gi|421228090|ref|ZP_15684788.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2072047]
gi|421232551|ref|ZP_15689192.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2080076]
gi|421234776|ref|ZP_15691393.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2061617]
gi|421236948|ref|ZP_15693545.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2071004]
gi|421239194|ref|ZP_15695758.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2071247]
gi|421241319|ref|ZP_15697864.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2080913]
gi|421243806|ref|ZP_15700317.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2081074]
gi|421245698|ref|ZP_15702196.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2081685]
gi|421248151|ref|ZP_15704627.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2082170]
gi|421250114|ref|ZP_15706570.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2082239]
gi|421266848|ref|ZP_15717728.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPAR27]
gi|421269057|ref|ZP_15719925.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPAR95]
gi|421271300|ref|ZP_15722153.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPAR48]
gi|421273529|ref|ZP_15724369.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPAR55]
gi|421275565|ref|ZP_15726394.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA52612]
gi|421279634|ref|ZP_15730440.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA17301]
gi|421281871|ref|ZP_15732667.1| pseudouridine synthase [Streptococcus pneumoniae GA04672]
gi|421283993|ref|ZP_15734778.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
gi|421286032|ref|ZP_15736807.1| pseudouridine synthase [Streptococcus pneumoniae GA60190]
gi|421288117|ref|ZP_15738880.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
gi|421290424|ref|ZP_15741174.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|421294872|ref|ZP_15745593.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|421296705|ref|ZP_15747414.1| pseudouridine synthase [Streptococcus pneumoniae GA58581]
gi|421299337|ref|ZP_15750024.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
gi|421301703|ref|ZP_15752373.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
gi|421302673|ref|ZP_15753337.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|421305815|ref|ZP_15756469.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
gi|421308077|ref|ZP_15758718.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
gi|421310283|ref|ZP_15760908.1| pseudouridine synthase [Streptococcus pneumoniae GA62681]
gi|421314730|ref|ZP_15765317.1| pseudouridine synthase [Streptococcus pneumoniae GA47562]
gi|444383525|ref|ZP_21181713.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS8106]
gi|444386225|ref|ZP_21184287.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS8203]
gi|444387728|ref|ZP_21185745.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS125219]
gi|444389038|ref|ZP_21186955.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS70012]
gi|444392056|ref|ZP_21189813.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS81218]
gi|444394714|ref|ZP_21192264.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0002]
gi|444398316|ref|ZP_21195799.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0006]
gi|444399808|ref|ZP_21197242.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0007]
gi|444401518|ref|ZP_21198703.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0008]
gi|444405159|ref|ZP_21202080.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0009]
gi|444407934|ref|ZP_21204601.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0010]
gi|444414895|ref|ZP_21211144.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0199]
gi|444416854|ref|ZP_21212928.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0360]
gi|444420801|ref|ZP_21216567.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0427]
gi|14973377|gb|AAK75946.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae TIGR4]
gi|15459364|gb|AAL00492.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae R6]
gi|116076361|gb|ABJ54081.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae D39]
gi|147755432|gb|EDK62481.1| hypothetical protein CGSSp11BS70_11759 [Streptococcus pneumoniae
SP11-BS70]
gi|147758055|gb|EDK65060.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SP14-BS69]
gi|147761769|gb|EDK68732.1| segregation and condensation protein B [Streptococcus pneumoniae
SP18-BS74]
gi|147764251|gb|EDK71182.1| segregation and condensation protein B [Streptococcus pneumoniae
SP19-BS75]
gi|147923615|gb|EDK74728.1| hypothetical protein CGSSp3BS71_03857 [Streptococcus pneumoniae
SP3-BS71]
gi|147924984|gb|EDK76066.1| hypothetical protein CGSSp6BS73_00460 [Streptococcus pneumoniae
SP6-BS73]
gi|147928099|gb|EDK79118.1| hypothetical protein CGSSp9BS68_07037 [Streptococcus pneumoniae
SP9-BS68]
gi|147929491|gb|EDK80486.1| hypothetical protein CGSSp23BS72_10018 [Streptococcus pneumoniae
SP23-BS72]
gi|168995971|gb|ACA36583.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae Hungary19A-6]
gi|172043185|gb|EDT51231.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CDC1873-00]
gi|182630151|gb|ACB91099.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CGSP14]
gi|183571751|gb|EDT92279.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SP195]
gi|183573862|gb|EDT94390.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CDC0288-04]
gi|183575773|gb|EDT96301.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CDC3059-06]
gi|183578730|gb|EDT99258.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae MLV-016]
gi|194357786|gb|ACF56234.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae G54]
gi|220675071|emb|CAR69649.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae ATCC 700669]
gi|225720104|gb|ACO15958.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 70585]
gi|225723654|gb|ACO19507.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae JJA]
gi|225728206|gb|ACO24057.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae Taiwan19F-14]
gi|270279687|gb|EFA25529.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
M143]
gi|288906776|emb|CBJ21610.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
mitis B6]
gi|298239196|gb|ADI70327.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|301794836|emb|CBW37292.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae INV104]
gi|301800653|emb|CBW33297.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae OXC141]
gi|301802565|emb|CBW35326.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae INV200]
gi|302598329|gb|EFL65373.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae BS455]
gi|302637066|gb|EFL67555.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SP14-BS292]
gi|302640321|gb|EFL70776.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SP-BS293]
gi|302640590|gb|EFL70994.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae BS458]
gi|302644746|gb|EFL74994.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae BS457]
gi|302646884|gb|EFL77109.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae BS397]
gi|306410024|gb|ADM85451.1| 16S rRNA uridine-516 pseudouridylate synthase-like pseudouridylate
synthase [Streptococcus pneumoniae AP200]
gi|306485131|gb|ADM92000.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 670-6B]
gi|307616325|gb|EFN95517.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis NCTC 12261]
gi|307620855|gb|EFN99939.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis SK597]
gi|321281404|gb|EFX58414.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
M334]
gi|327390035|gb|EGE88380.1| hypothetical protein SPAR5_1727 [Streptococcus pneumoniae GA04375]
gi|332072212|gb|EGI82697.1| hypothetical protein SPAR148_1785 [Streptococcus pneumoniae
GA17545]
gi|332072697|gb|EGI83180.1| hypothetical protein SPAR50_1869 [Streptococcus pneumoniae GA17570]
gi|332073025|gb|EGI83505.1| hypothetical protein SPAR68_1901 [Streptococcus pneumoniae GA41301]
gi|332199894|gb|EGJ13969.1| hypothetical protein SPAR69_1806 [Streptococcus pneumoniae GA41317]
gi|332200429|gb|EGJ14502.1| hypothetical protein SPAR93_1907 [Streptococcus pneumoniae GA47368]
gi|332201284|gb|EGJ15355.1| hypothetical protein SPAR120_1791 [Streptococcus pneumoniae
GA47901]
gi|342835816|gb|EGU70046.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK569]
gi|353746252|gb|EHD26914.1| hypothetical protein SPAR19_1862 [Streptococcus pneumoniae GA11184]
gi|353746387|gb|EHD27048.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47502]
gi|353746842|gb|EHD27502.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 4027-06]
gi|353752250|gb|EHD32881.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 6735-05]
gi|353754878|gb|EHD35490.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44288]
gi|353756549|gb|EHD37150.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47281]
gi|353757120|gb|EHD37715.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47033]
gi|353761017|gb|EHD41592.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA43265]
gi|353763168|gb|EHD43725.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44452]
gi|353765140|gb|EHD45688.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA49138]
gi|353767982|gb|EHD48510.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA16531]
gi|353768215|gb|EHD48740.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 6901-05]
gi|353770809|gb|EHD51321.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 7286-06]
gi|353774858|gb|EHD55345.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP070]
gi|353776179|gb|EHD56658.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44500]
gi|353778590|gb|EHD59058.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA41410]
gi|353781455|gb|EHD61900.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA49447]
gi|353782629|gb|EHD63062.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA41538]
gi|353785482|gb|EHD65901.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 5787-06]
gi|353788239|gb|EHD68637.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 6963-05]
gi|353791258|gb|EHD71639.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA18523]
gi|353792749|gb|EHD73121.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44194]
gi|353795364|gb|EHD75714.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44378]
gi|353795579|gb|EHD75927.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44511]
gi|353798755|gb|EHD79083.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP170]
gi|353802354|gb|EHD82654.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA07643]
gi|353804602|gb|EHD84883.1| hypothetical protein SPAR30_1756 [Streptococcus pneumoniae GA13455]
gi|353804756|gb|EHD85036.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA11304]
gi|353805313|gb|EHD85588.1| hypothetical protein SPAR31_2227 [Streptococcus pneumoniae GA13494]
gi|353811553|gb|EHD91795.1| hypothetical protein SPAR34_1710 [Streptococcus pneumoniae GA13856]
gi|353811681|gb|EHD91921.1| hypothetical protein SPAR32_1897 [Streptococcus pneumoniae GA13637]
gi|353814567|gb|EHD94793.1| hypothetical protein SPAR37_1771 [Streptococcus pneumoniae GA14798]
gi|353817150|gb|EHD97358.1| hypothetical protein SPAR38_1844 [Streptococcus pneumoniae GA16121]
gi|353819713|gb|EHD99903.1| hypothetical protein SPAR39_1804 [Streptococcus pneumoniae GA16242]
gi|353822336|gb|EHE02512.1| hypothetical protein SPAR43_1945 [Streptococcus pneumoniae GA17227]
gi|353824616|gb|EHE04790.1| hypothetical protein SPAR41_1952 [Streptococcus pneumoniae GA16833]
gi|353826966|gb|EHE07123.1| hypothetical protein SPAR49_1896 [Streptococcus pneumoniae GA17328]
gi|353828660|gb|EHE08798.1| hypothetical protein SPAR52_1919 [Streptococcus pneumoniae GA17971]
gi|353828981|gb|EHE09117.1| hypothetical protein SPAR45_1786 [Streptococcus pneumoniae GA17371]
gi|353833946|gb|EHE14054.1| hypothetical protein SPAR56_2063 [Streptococcus pneumoniae GA19077]
gi|353835725|gb|EHE15819.1| hypothetical protein SPAR58_1774 [Streptococcus pneumoniae GA19451]
gi|353837496|gb|EHE17580.1| hypothetical protein SPAR67_1897 [Streptococcus pneumoniae GA41277]
gi|353840724|gb|EHE20788.1| hypothetical protein SPAR71_1889 [Streptococcus pneumoniae GA41437]
gi|353841945|gb|EHE21997.1| hypothetical protein SPAR73_1927 [Streptococcus pneumoniae GA41565]
gi|353843305|gb|EHE23350.1| hypothetical protein SPAR74_1846 [Streptococcus pneumoniae GA41688]
gi|353847833|gb|EHE27853.1| hypothetical protein SPAR78_1812 [Streptococcus pneumoniae GA43380]
gi|353849844|gb|EHE29849.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47360]
gi|353853829|gb|EHE33810.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47373]
gi|353855387|gb|EHE35357.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47388]
gi|353857993|gb|EHE37955.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47439]
gi|353860516|gb|EHE40461.1| hypothetical protein SPAR103_1702 [Streptococcus pneumoniae
GA47688]
gi|353861792|gb|EHE41727.1| hypothetical protein SPAR106_1771 [Streptococcus pneumoniae
GA47778]
gi|353863785|gb|EHE43705.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47976]
gi|353866585|gb|EHE46485.1| hypothetical protein SPAR115_1814 [Streptococcus pneumoniae
GA52306]
gi|353869784|gb|EHE49665.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA54644]
gi|353870120|gb|EHE49996.1| hypothetical protein SPAR147_1802 [Streptococcus pneumoniae
Netherlands15B-37]
gi|353873944|gb|EHE53803.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP127]
gi|353875206|gb|EHE55060.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47751]
gi|353878844|gb|EHE58674.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 5185-06]
gi|353880021|gb|EHE59839.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP112]
gi|353880752|gb|EHE60567.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 3063-00]
gi|353885543|gb|EHE65332.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP01]
gi|353886173|gb|EHE65957.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA07228]
gi|353886680|gb|EHE66462.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA08780]
gi|353891752|gb|EHE71506.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA19690]
gi|353892372|gb|EHE72121.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|353900275|gb|EHE75833.1| hypothetical protein SPAR24_1867 [Streptococcus pneumoniae GA11663]
gi|353900918|gb|EHE76468.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA11426]
gi|353904980|gb|EHE80430.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA13338]
gi|379138632|gb|AFC95423.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae ST556]
gi|379530097|gb|EHY95338.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA02254]
gi|379530449|gb|EHY95689.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA02714]
gi|379530811|gb|EHY96050.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA02270]
gi|379536599|gb|EHZ01785.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA04175]
gi|379537299|gb|EHZ02484.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA13499]
gi|379539116|gb|EHZ04296.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05245]
gi|379543216|gb|EHZ08368.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA05248]
gi|379543937|gb|EHZ09085.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA06083]
gi|379546470|gb|EHZ11609.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA07914]
gi|379550225|gb|EHZ15327.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA11856]
gi|379550464|gb|EHZ15564.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA13430]
gi|379555912|gb|EHZ20973.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13723]
gi|379556657|gb|EHZ21707.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA14373]
gi|379558982|gb|EHZ24014.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA14688]
gi|379563521|gb|EHZ28525.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17457]
gi|379565031|gb|EHZ30026.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA18068]
gi|379566341|gb|EHZ31332.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17719]
gi|379569853|gb|EHZ34820.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA19101]
gi|379573051|gb|EHZ38008.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA19923]
gi|379577149|gb|EHZ42073.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA40183]
gi|379577309|gb|EHZ42231.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA40410]
gi|379581831|gb|EHZ46715.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA43257]
gi|379585711|gb|EHZ50567.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44128]
gi|379585893|gb|EHZ50747.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA43264]
gi|379586856|gb|EHZ51706.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA44386]
gi|379591968|gb|EHZ56787.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47179]
gi|379592553|gb|EHZ57369.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47210]
gi|379594132|gb|EHZ58943.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47461]
gi|379598439|gb|EHZ63228.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47522]
gi|379599695|gb|EHZ64478.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47597]
gi|379600712|gb|EHZ65493.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47628]
gi|379605571|gb|EHZ70322.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47794]
gi|379605981|gb|EHZ70731.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA47760]
gi|379608656|gb|EHZ73402.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA49194]
gi|379610908|gb|EHZ75638.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA49542]
gi|379613081|gb|EHZ77796.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 8190-05]
gi|379615052|gb|EHZ79762.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 7879-04]
gi|379618096|gb|EHZ82776.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 5652-06]
gi|379619250|gb|EHZ83924.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 7533-05]
gi|379622253|gb|EHZ86889.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 4075-00]
gi|379622478|gb|EHZ87112.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP02]
gi|379625695|gb|EHZ90321.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP03]
gi|379627668|gb|EHZ92279.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP04]
gi|379628117|gb|EHZ92722.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae EU-NP05]
gi|379634410|gb|EHZ98975.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA05578]
gi|379635923|gb|EIA00482.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae England14-9]
gi|379637905|gb|EIA02454.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA02506]
gi|379641399|gb|EIA05937.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA08825]
gi|381308722|gb|EIC49565.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SV36]
gi|381314511|gb|EIC55280.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 459-5]
gi|381319365|gb|EIC60076.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SV35]
gi|383347110|gb|EID25112.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK616]
gi|383351122|gb|EID28945.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK575]
gi|383354592|gb|EID32150.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK579]
gi|395572823|gb|EJG33418.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070035]
gi|395572883|gb|EJG33476.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070005]
gi|395586412|gb|EJG46783.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070425]
gi|395587175|gb|EJG47537.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070531]
gi|395588796|gb|EJG49122.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070768]
gi|395593248|gb|EJG53498.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2072047]
gi|395595054|gb|EJG55289.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2080076]
gi|395599829|gb|EJG59991.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2061617]
gi|395600837|gb|EJG60992.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2071247]
gi|395601711|gb|EJG61858.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2071004]
gi|395606099|gb|EJG66209.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2081074]
gi|395607697|gb|EJG67794.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2080913]
gi|395608225|gb|EJG68321.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2081685]
gi|395612663|gb|EJG72701.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2082170]
gi|395613085|gb|EJG73117.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2082239]
gi|395866496|gb|EJG77625.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPAR48]
gi|395866916|gb|EJG78044.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPAR27]
gi|395868105|gb|EJG79224.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPAR95]
gi|395873529|gb|EJG84621.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA52612]
gi|395873960|gb|EJG85050.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPAR55]
gi|395879127|gb|EJG90189.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA17301]
gi|395880038|gb|EJG91093.1| pseudouridine synthase [Streptococcus pneumoniae GA04672]
gi|395880090|gb|EJG91144.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
gi|395885340|gb|EJG96364.1| pseudouridine synthase [Streptococcus pneumoniae GA60190]
gi|395886680|gb|EJG97696.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
gi|395888109|gb|EJG99123.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|395893441|gb|EJH04428.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|395895578|gb|EJH06553.1| pseudouridine synthase [Streptococcus pneumoniae GA58581]
gi|395899263|gb|EJH10207.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
gi|395900808|gb|EJH11746.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
gi|395901295|gb|EJH12231.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|395904773|gb|EJH15687.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
gi|395906977|gb|EJH17874.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
gi|395909898|gb|EJH20773.1| pseudouridine synthase [Streptococcus pneumoniae GA62681]
gi|395913415|gb|EJH24268.1| pseudouridine synthase [Streptococcus pneumoniae GA47562]
gi|404460578|gb|EKA06828.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
GMD6S]
gi|406370171|gb|AFS43861.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae gamPNI0373]
gi|410868257|gb|EKS16224.1| pseudouridine synthase [Streptococcus sp. F0441]
gi|429316674|emb|CCP36387.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPN034156]
gi|429320033|emb|CCP33358.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPN034183]
gi|429321851|emb|CCP35332.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPN994039]
gi|429323671|emb|CCP31373.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae SPN994038]
gi|444248160|gb|ELU54676.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS8203]
gi|444249042|gb|ELU55538.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS8106]
gi|444252002|gb|ELU58468.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS125219]
gi|444257638|gb|ELU63971.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS70012]
gi|444259332|gb|ELU65646.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0002]
gi|444260973|gb|ELU67281.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0006]
gi|444264094|gb|ELU70206.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PCS81218]
gi|444268043|gb|ELU73922.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0008]
gi|444268106|gb|ELU73983.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0007]
gi|444271530|gb|ELU77281.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0010]
gi|444275053|gb|ELU80682.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0009]
gi|444280970|gb|ELU86311.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0199]
gi|444283850|gb|ELU89026.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0427]
gi|444285027|gb|ELU90121.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pneumoniae PNI0360]
Length = 240
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|357050742|ref|ZP_09111939.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
saccharolyticus 30_1]
gi|355380894|gb|EHG28026.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
saccharolyticus 30_1]
Length = 238
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD T+GL+++TNDGD +Q + HP ++ K Y+A + G +K+ L+ +S G
Sbjct: 94 RLYPIGRLDYDTSGLLLLTNDGDLSQKLMHPKHEVDKVYVAKVKGIADKKQLLPLSRGIR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG P E+L +++ +HEGRNH+V+ ++K GL + LKR G
Sbjct: 154 IEGKKTAPARFEILSTDAATQTSIVQLTIHEGRNHQVKNMLKAVGLPVQKLKREMYGSLT 213
Query: 142 LPSDLGIGMHVELKQSDL 159
L + L G + EL + ++
Sbjct: 214 L-AGLRPGEYRELTKKEV 230
>gi|323351021|ref|ZP_08086678.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis VMC66]
gi|422820692|ref|ZP_16868885.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK353]
gi|422854849|ref|ZP_16901513.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK160]
gi|422861945|ref|ZP_16908577.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK408]
gi|422875820|ref|ZP_16922290.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1056]
gi|322122745|gb|EFX94454.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis VMC66]
gi|324991310|gb|EGC23243.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK353]
gi|325696344|gb|EGD38235.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK160]
gi|327474540|gb|EGF19945.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK408]
gi|332362256|gb|EGJ40056.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1056]
Length = 242
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTKPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|168487318|ref|ZP_02711826.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CDC1087-00]
gi|418185620|ref|ZP_12822160.1| hypothetical protein SPAR91_1809 [Streptococcus pneumoniae GA47283]
gi|419511117|ref|ZP_14050758.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP141]
gi|419530878|ref|ZP_14070404.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40028]
gi|421213799|ref|ZP_15670753.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070108]
gi|421215941|ref|ZP_15672862.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070109]
gi|183569796|gb|EDT90324.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae CDC1087-00]
gi|353848350|gb|EHE28366.1| hypothetical protein SPAR91_1809 [Streptococcus pneumoniae GA47283]
gi|379571287|gb|EHZ36245.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40028]
gi|379631720|gb|EHZ96297.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae NP141]
gi|395579030|gb|EJG39540.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070108]
gi|395580148|gb|EJG40643.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae 2070109]
Length = 240
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|342164553|ref|YP_004769192.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pseudopneumoniae IS7493]
gi|341934435|gb|AEL11332.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pseudopneumoniae IS7493]
Length = 240
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|422859543|ref|ZP_16906187.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK330]
gi|327470426|gb|EGF15882.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK330]
Length = 242
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTKPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|385262367|ref|ZP_10040473.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. SK643]
gi|385190674|gb|EIF38114.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. SK643]
Length = 240
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|418975974|ref|ZP_13523868.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK1074]
gi|383346629|gb|EID24652.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK1074]
Length = 240
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|293364213|ref|ZP_06610939.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
oralis ATCC 35037]
gi|306824561|ref|ZP_07457907.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|307702434|ref|ZP_07639390.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
oralis ATCC 35037]
gi|417794740|ref|ZP_12441980.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK255]
gi|419778182|ref|ZP_14304078.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK10]
gi|291317059|gb|EFE57486.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
oralis ATCC 35037]
gi|304433348|gb|EFM36318.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|307624016|gb|EFO02997.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
oralis ATCC 35037]
gi|334267739|gb|EGL86195.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK255]
gi|383187499|gb|EIC79949.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK10]
Length = 240
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|421488269|ref|ZP_15935661.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK304]
gi|400368645|gb|EJP21653.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK304]
Length = 240
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|422882837|ref|ZP_16929293.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK355]
gi|332358327|gb|EGJ36153.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK355]
Length = 242
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTKPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|431368560|ref|ZP_19509374.1| pseudouridine synthase [Enterococcus faecium E1627]
gi|430584148|gb|ELB22498.1| pseudouridine synthase [Enterococcus faecium E1627]
Length = 238
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++++TNDGDFAQ ++HP ++ K Y+A + G K L +++G
Sbjct: 92 KERIYPVGRLDYDTSGILLLTNDGDFAQRLTHPKHEVDKVYVAKVKGIATKSMLAPLTKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P ++L P + + +HEGRNH+V+ +++ GL + LKR + G
Sbjct: 152 IKIEGRKTSPAKFQILSVDPKTNHSIVELTLHEGRNHQVKNMLQAVGLPVQKLKREKYGD 211
Query: 140 FRL 142
L
Sbjct: 212 LTL 214
>gi|125718577|ref|YP_001035710.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK36]
gi|422851067|ref|ZP_16897737.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK150]
gi|422870315|ref|ZP_16916808.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1087]
gi|422878202|ref|ZP_16924668.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1059]
gi|422928056|ref|ZP_16960998.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis ATCC 29667]
gi|422931052|ref|ZP_16963983.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK340]
gi|125498494|gb|ABN45160.1| Ribosomal large subunit pseudouridine synthase B, putative
[Streptococcus sanguinis SK36]
gi|325695058|gb|EGD36961.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK150]
gi|328946852|gb|EGG40989.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1087]
gi|332367409|gb|EGJ45142.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1059]
gi|339617620|gb|EGQ22242.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis ATCC 29667]
gi|339620234|gb|EGQ24804.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK340]
Length = 242
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTKPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417934840|ref|ZP_12578160.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis bv. 2 str. F0392]
gi|340771410|gb|EGR93925.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis bv. 2 str. F0392]
Length = 240
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|257869547|ref|ZP_05649200.1| pseudouridine synthase [Enterococcus gallinarum EG2]
gi|257803711|gb|EEV32533.1| pseudouridine synthase [Enterococcus gallinarum EG2]
Length = 238
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD T+GL+++TNDGD +Q + HP ++ K Y+A + G +K+ L+ +S G
Sbjct: 94 RLYPIGRLDYDTSGLLLLTNDGDLSQKLMHPKHEVDKVYVAKVKGIADKKQLLPLSRGIR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG P E+L +++ +HEGRNH+V+ ++K GL + LKR G
Sbjct: 154 IEGKKTAPARFEILSTDAATQTSIVQLTIHEGRNHQVKNMLKAVGLPVQKLKREMYGSLT 213
Query: 142 LPSDLGIGMHVELKQSDL 159
L + L G + EL + ++
Sbjct: 214 L-AGLRPGEYRELTKKEV 230
>gi|383937435|ref|ZP_09990696.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pseudopneumoniae SK674]
gi|418969158|ref|ZP_13520302.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383352371|gb|EID30081.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383715662|gb|EID71607.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pseudopneumoniae SK674]
Length = 240
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|419779917|ref|ZP_14305770.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK100]
gi|383185742|gb|EIC78235.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK100]
Length = 240
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|419443340|ref|ZP_13983364.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA13224]
gi|379549727|gb|EHZ14830.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA13224]
Length = 240
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLARG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417939648|ref|ZP_12582937.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK313]
gi|343389843|gb|EGV02427.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
oralis SK313]
Length = 240
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|422857853|ref|ZP_16904503.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1057]
gi|327462027|gb|EGF08356.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK1057]
Length = 242
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTKPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|422847275|ref|ZP_16893958.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK72]
gi|325687113|gb|EGD29136.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
sanguinis SK72]
Length = 242
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 IEIEGRKTKPAVYEIIKVDPAKNRSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|307710771|ref|ZP_07647199.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis SK321]
gi|307617377|gb|EFN96549.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mitis SK321]
Length = 240
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LDIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|257866937|ref|ZP_05646590.1| pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257873270|ref|ZP_05652923.1| pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257800993|gb|EEV29923.1| pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257807434|gb|EEV36256.1| pseudouridine synthase [Enterococcus casseliflavus EC10]
Length = 257
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 80/140 (57%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T G +++TNDG A + P ++KEY A ++G + ++G
Sbjct: 111 REDLFPVGRLDKDTEGFLLITNDGGLAHQLLSPKKHVEKEYYAQVEGIMTAEDQKIFAKG 170
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++G P +++L + R I++++HEG+ H+V+ +V G ++ LKR+R+GG
Sbjct: 171 IKLDGEWTLPAELQILNVDEEEMRSEIKLILHEGKFHQVKRMVHAVGKEVVYLKRIRMGG 230
Query: 140 FRLPSDLGIGMHVELKQSDL 159
LP DL +G + EL ++
Sbjct: 231 LSLPDDLALGEYRELTSEEM 250
>gi|392988437|ref|YP_006487030.1| ribosomal small subunit pseudouridine synthaseA [Enterococcus hirae
ATCC 9790]
gi|392335857|gb|AFM70139.1| ribosomal small subunit pseudouridine synthaseA [Enterococcus hirae
ATCC 9790]
Length = 241
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL++VTNDG A + P ++KEY A ++G + + + A S+G
Sbjct: 93 REDLFPVGRLDKDTEGLLVVTNDGGLAHRLLSPKKHVEKEYFAEVNGIMTEADVQAFSQG 152
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+G T P + ++ + I +++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 153 LTIDGGEETRPAQLSIVSVNSEDETSVIHLILHEGKFHQVKRMVKAVGKEVTYLKRIRMG 212
Query: 139 GFRLPSDLGIGMHVELKQSDLKLMGWKS 166
F LP DL +G + + ++K + K
Sbjct: 213 NFLLPEDLALGEYRPMTAEEVKQLEGKE 240
>gi|425055835|ref|ZP_18459301.1| pseudouridylate synthase [Enterococcus faecium 505]
gi|403033087|gb|EJY44613.1| pseudouridylate synthase [Enterococcus faecium 505]
Length = 239
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A + G + + + +EG
Sbjct: 93 REDLFPVGRLDKDTEGLLILTNDGVFAHQLLSPKKHVEKEYLAEVSGIMTEEDIHLFAEG 152
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+++G T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 153 LIMDGDEQTLPAKLQIDQVDQESETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 212
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + + + +L+
Sbjct: 213 NFCLPKDLNKGQYRPMTKEELE 234
>gi|419482896|ref|ZP_14022682.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA40563]
gi|379578500|gb|EHZ43410.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pneumoniae GA40563]
Length = 240
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+ + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVVRVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++++HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDPVKNRSVVQLIIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417849305|ref|ZP_12495228.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK1080]
gi|339456675|gb|EGP69263.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
mitis SK1080]
Length = 240
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E++ P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEIIKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417922325|ref|ZP_12565813.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
cristatus ATCC 51100]
gi|342832422|gb|EGU66717.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
cristatus ATCC 51100]
Length = 243
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKEVLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VIEG P V E+L P R +++ +HEGRNH+V+++ + GL + L R + G
Sbjct: 151 LVIEGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLPVDKLSRTQFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417920419|ref|ZP_12563926.1| pseudouridylate synthase [Streptococcus australis ATCC 700641]
gi|342829369|gb|EGU63725.1| pseudouridylate synthase [Streptococcus australis ATCC 700641]
Length = 237
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 74/121 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 92 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKENLRPLTRG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P E+L P+ R +++ +HEGRNH+V+++ + GL + L R + G
Sbjct: 152 VTIDGKKTKPATYEILKVDPEKNRSVVQLTIHEGRNHQVKKMFEAVGLLVDKLSRTQFGN 211
Query: 140 F 140
Sbjct: 212 L 212
>gi|319946464|ref|ZP_08020701.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
australis ATCC 700641]
gi|319747432|gb|EFV99688.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
australis ATCC 700641]
Length = 242
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 74/121 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P E+L P+ R +++ +HEGRNH+V+++ + GL + L R + G
Sbjct: 151 VTIDGKKTKPATYEILKVDPEKNRSVVQLTIHEGRNHQVKKMFEAVGLLVDKLSRTQFGN 210
Query: 140 F 140
Sbjct: 211 L 211
>gi|424764586|ref|ZP_18192006.1| pseudouridylate synthase [Enterococcus faecium TX1337RF]
gi|402418978|gb|EJV51265.1| pseudouridylate synthase [Enterococcus faecium TX1337RF]
Length = 255
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+I+TNDG FA + P ++KEY+A + G + + + +EG
Sbjct: 109 REDLFPVGRLDKDTEGLLILTNDGIFAHQLLSPKKHVEKEYLAEVSGIMTEEDIRLFAEG 168
Query: 80 TVIEGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I+ T P +++ + IR+++HEG+ H+V+ +VK G ++ LKR+R+G
Sbjct: 169 LIIDCDEQTLPAKLQIDQVDQESETSIIRLILHEGKFHQVKRMVKAVGKEVLYLKRIRMG 228
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F LP DL G + L + +L+
Sbjct: 229 NFWLPKDLNKGQYRPLTKEELE 250
>gi|322385923|ref|ZP_08059564.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
cristatus ATCC 51100]
gi|321270038|gb|EFX52957.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
cristatus ATCC 51100]
Length = 273
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G NK L ++ G
Sbjct: 121 KERIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKEVLRPLTRG 180
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VIEG P V E+L P R +++ +HEGRNH+V+++ + GL + L R + G
Sbjct: 181 LVIEGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLPVDKLSRTQFGH 240
Query: 140 FRL 142
L
Sbjct: 241 LDL 243
>gi|357235998|ref|ZP_09123341.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
criceti HS-6]
gi|356883980|gb|EHI74180.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
criceti HS-6]
Length = 241
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDEMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ +PD R + + +HEGRNH+V+++ + GL + L R + G
Sbjct: 151 VVIDGKKTGPARYNIIKVEPDKNRSIVELTIHEGRNHQVKKMFEAVGLLVDKLSRTQFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LNL 213
>gi|322391362|ref|ZP_08064832.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
peroris ATCC 700780]
gi|321145788|gb|EFX41179.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
peroris ATCC 700780]
Length = 240
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 76/123 (61%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G +K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGIADKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 VEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|406988454|gb|EKE08450.1| Pseudouridine synthase [uncultured bacterium]
Length = 233
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 79/141 (56%), Gaps = 7/141 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLFTVGRLD TTGL++VTNDG FA V HPSS + KEYI + HL +S+G
Sbjct: 97 RLFTVGRLDRETTGLLLVTNDGIFANKVIHPSSNILKEYIVKCRQEIVAEHLETLSQGAR 156
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ P V+ L + +I V EG+ HEVR + + AGLK+ L R+RIG
Sbjct: 157 VDDKWIRPVSVQKL------RKGTFKIRVKEGKKHEVRIIAERAGLKIVELSRVRIGSLA 210
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L DL G L + D +L+
Sbjct: 211 L-GDLAPGEFRLLSEKDKELL 230
>gi|312864688|ref|ZP_07724919.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
downei F0415]
gi|311099815|gb|EFQ58028.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
downei F0415]
Length = 241
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTG++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGVLILTNDGDFTDEMIHPRNEIDKVYLARLKGLATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P +++ +PD R + + +HEGRNH+V+ + + GL + L R + G
Sbjct: 151 VVIDGKKTGPARYKIIKVEPDKNRSLVELTIHEGRNHQVKNMFQAVGLLVDKLSRTQFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LNL 213
>gi|313890958|ref|ZP_07824580.1| pseudouridylate synthase [Streptococcus pseudoporcinus SPIN 20026]
gi|416852016|ref|ZP_11909161.1| pseudouridylate synthase [Streptococcus pseudoporcinus LQ 940-04]
gi|313120682|gb|EFR43799.1| pseudouridylate synthase [Streptococcus pseudoporcinus SPIN 20026]
gi|356739505|gb|EHI64737.1| pseudouridylate synthase [Streptococcus pseudoporcinus LQ 940-04]
Length = 239
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 84/140 (60%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD T GL+++TN+GD A + P + K Y+A +DG + + + A +G +
Sbjct: 96 VFPVGRLDKDTHGLLLLTNNGDLAHRLLSPKKHVNKVYVAEVDGLMTSQDIEAFEKGIQL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
C P V+E+L D + R++IV+ EG+ H+V+ +V G ++ L+RL +G +L
Sbjct: 156 SDHQCQPAVLEILASDRDKFQSRVKIVIKEGKFHQVKRMVLACGKEVRDLQRLEMGPLQL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
S L +G +L++S+++ +
Sbjct: 216 DSTLDLGAFRKLEKSEIEAL 235
>gi|262038781|ref|ZP_06012135.1| ribosomal large subunit pseudouridine synthase B [Leptotrichia
goodfellowii F0264]
gi|261747192|gb|EEY34677.1| ribosomal large subunit pseudouridine synthase B [Leptotrichia
goodfellowii F0264]
Length = 228
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 79/144 (54%), Gaps = 19/144 (13%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY+KS + RLFT GRLD T GLII++NDG+ V HP KL K YIA +
Sbjct: 85 DYIKS---------KKRLFTYGRLDYMTEGLIIISNDGEVYNHVMHPRKKLYKSYIAKLS 135
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
V ++ + A G VI+G P V+ I + IRI + EGRN ++R++V+
Sbjct: 136 REVEEKDMEAWKHGVVIDGKRTAPAKVK------KIDKKEIRIAIFEGRNRQIRKMVEIL 189
Query: 126 GLKLYSLKRLRIG----GFRLPSD 145
G + SLKR+++G G+ P D
Sbjct: 190 GYTVESLKRVKVGELTLGYLQPGD 213
>gi|325571145|ref|ZP_08146717.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
casseliflavus ATCC 12755]
gi|325156230|gb|EGC68416.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
casseliflavus ATCC 12755]
Length = 240
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 73/117 (62%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+ +Q + HP +++K Y+A + G +K+ L+ +++G
Sbjct: 96 RVYPVGRLDYDTSGLLLLTNDGELSQTLMHPKHEVEKVYVAKVKGIADKKQLLPLTKGIR 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
IEG P E+L +++ +HEGRNH+V+ ++K GL + LKR G
Sbjct: 156 IEGRKTAPARFEILSTDQTAQSSIVQLTIHEGRNHQVKNMLKAVGLPVQKLKRENYG 212
>gi|125624024|ref|YP_001032507.1| pseudouridylate synthase [Lactococcus lactis subsp. cremoris
MG1363]
gi|124492832|emb|CAL97787.1| pseudouridylate synthase [Lactococcus lactis subsp. cremoris
MG1363]
Length = 257
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HPS + K Y+A ++G NK +L ++ G
Sbjct: 109 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPSHGVDKVYVAKVEGQANKENLRPLTLG 168
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 169 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGT 228
Query: 140 FRL 142
L
Sbjct: 229 LTL 231
>gi|420263964|ref|ZP_14766599.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
C1]
gi|394768863|gb|EJF48740.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
C1]
Length = 238
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+ +Q + HP +++K Y+A + G +K+ L +++G
Sbjct: 94 RVYPVGRLDYDTSGLLLLTNDGELSQTLMHPKHEVEKVYVAKVKGIADKKQLFPLTKGIR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
IEG P E+L +++ +HEGRNH+V+ ++K GL + LKR G
Sbjct: 154 IEGRKTAPARFEILSTDQTAQSSIVQLTIHEGRNHQVKNMLKAVGLPVQKLKRENYG 210
>gi|414156041|ref|ZP_11412350.1| pseudouridine synthase [Streptococcus sp. F0442]
gi|410872250|gb|EKS20194.1| pseudouridine synthase [Streptococcus sp. F0442]
Length = 243
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 72/119 (60%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 93 RIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRGVT 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I+G P E+L + R +++ +HEGRNH+V+++ + GL + L R R G
Sbjct: 153 IDGKKTKPATYEILKVDVEKNRSVVQLTIHEGRNHQVKKMFEAVGLLVDKLSRTRFGNL 211
>gi|307274982|ref|ZP_07556145.1| hypothetical protein HMPREF9521_00595 [Enterococcus faecalis
TX2134]
gi|421512406|ref|ZP_15959213.1| Ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis ATCC 29212]
gi|306508430|gb|EFM77537.1| hypothetical protein HMPREF9521_00595 [Enterococcus faecalis
TX2134]
gi|401674519|gb|EJS80870.1| Ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis ATCC 29212]
Length = 238
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG F+Q ++HP ++ K Y+A I G KR L+ +++G
Sbjct: 94 RIYPVGRLDYDTSGLLLLTNDGSFSQKLTHPKHEVDKVYVAKIKGVPTKRELLPLAKGIR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + + +HEGRNH+V+++ + G + LKR R G
Sbjct: 154 IDGKRTAPANFQILSADIKTGSSVVELTIHEGRNHQVKKMFQAVGFPVQKLKRERYGELT 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|384081924|ref|ZP_09993099.1| RNA-binding S4 domain-containing protein [gamma proteobacterium
HIMB30]
Length = 295
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P + + R VGRLD+ T+GLI++T DG+ A + HPSS + +EY+ + G V + L
Sbjct: 92 RLPKIAQGRWIAVGRLDINTSGLILLTTDGELANRLMHPSSGIDREYLVRVHGDVTEEQL 151
Query: 74 IAISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ +G ++ +G D+V PD + + EGRN EVR L ++ GL++ L
Sbjct: 152 ERLVDGVILDDGPARFTDIVRHPEADPDRRNQWFYVALMEGRNREVRRLWESQGLQVNRL 211
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLMG 163
KR+R G LPS L G VEL Q ++ +G
Sbjct: 212 KRVRYGCIFLPSFLKQGHFVELGQKEVDDLG 242
>gi|389854372|ref|YP_006356616.1| ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. cremoris NZ9000]
gi|300070794|gb|ADJ60194.1| ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. cremoris NZ9000]
Length = 239
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HPS + K Y+A ++G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPSHGVDKVYVAKVEGQANKENLRPLTLG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 151 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGT 210
Query: 140 FRL 142
L
Sbjct: 211 LTL 213
>gi|422869386|ref|ZP_16915906.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis TX1467]
gi|329571723|gb|EGG53404.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis TX1467]
Length = 205
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG F+Q ++HP ++ K Y+A I G KR L+ +++G
Sbjct: 61 RIYPVGRLDYDTSGLLLLTNDGSFSQKLTHPKHEVDKVYVAKIKGVPTKRDLLPLAKGIR 120
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + + +HEGRNH+V+++ + G + LKR R G
Sbjct: 121 IDGKRTAPANFQILSADIKTGSSVVELTIHEGRNHQVKKMFQAVGFPVQKLKRERYGELT 180
Query: 142 L 142
L
Sbjct: 181 L 181
>gi|319947493|ref|ZP_08021725.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
australis ATCC 700641]
gi|417919780|ref|ZP_12563304.1| pseudouridylate synthase [Streptococcus australis ATCC 700641]
gi|319746433|gb|EFV98694.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
australis ATCC 700641]
gi|342831757|gb|EGU66067.1| pseudouridylate synthase [Streptococcus australis ATCC 700641]
Length = 240
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG- 79
P+ + +GRLD TTGL+++T++G + HP ++KEY AT++G + H+ EG
Sbjct: 93 PKTYPIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHIEKEYAATVNGPLEPAHIEKFQEGI 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
T ++GT C P +E+L + + + + EG+ H+V++++ + G+K+ SLKR++ G
Sbjct: 153 TFLDGTTCKPAKLEILS--SSLTESQALVTLSEGKFHQVKKMLLSVGVKVTSLKRIKFGD 210
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
F L +L G + L Q +L+++
Sbjct: 211 FSLDPNLAEGQYRPLNQDELQII 233
>gi|401683971|ref|ZP_10815855.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. BS35b]
gi|400186650|gb|EJO20858.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
sp. BS35b]
Length = 240
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGVANKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V E+L R +++ +HEGRNH+V+++ + GL++ L R R G
Sbjct: 151 LEIDGKKTKPAVYEILKVDLVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGH 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|116512118|ref|YP_809334.1| ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. cremoris SK11]
gi|116107772|gb|ABJ72912.1| ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. cremoris SK11]
Length = 239
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HPS + K Y+A ++G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPSHGVDKVYVAKVEGQANKENLRPLTLG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 151 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGT 210
Query: 140 FRL 142
L
Sbjct: 211 LTL 213
>gi|414074418|ref|YP_006999635.1| Ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. cremoris UC509.9]
gi|413974338|gb|AFW91802.1| Ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. cremoris UC509.9]
Length = 233
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HPS + K Y+A ++G NK +L ++ G
Sbjct: 85 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPSHGVDKVYVAKVEGQANKENLRPLTLG 144
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 145 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGT 204
Query: 140 FRL 142
L
Sbjct: 205 LTL 207
>gi|422758345|ref|ZP_16812107.1| hypothetical protein SDD27957_02020 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
gi|322411180|gb|EFY02088.1| hypothetical protein SDD27957_02020 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 240
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWNTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LEL 213
>gi|423069958|ref|ZP_17058734.1| hypothetical protein HMPREF9177_00051 [Streptococcus intermedius
F0413]
gi|355366279|gb|EHG13997.1| hypothetical protein HMPREF9177_00051 [Streptococcus intermedius
F0413]
Length = 241
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G +K L +++G
Sbjct: 93 RIYPVGRLDWDTSGALILTNDGDFTDKMIHPRNEIDKVYVARVKGVADKEVLRPLTKGVK 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V E+L P R I++ +HEGRNH+V+++ + GL++ L R + G
Sbjct: 153 IDGKKTKPAVYEILKVDPVKNRSIIQLTIHEGRNHQVKKMFEAVGLQVDKLSRTQFGHLN 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|332523615|ref|ZP_08399867.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
porcinus str. Jelinkova 176]
gi|332314879|gb|EGJ27864.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
porcinus str. Jelinkova 176]
Length = 240
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|257876560|ref|ZP_05656213.1| pseudouridine synthase [Enterococcus casseliflavus EC20]
gi|257810726|gb|EEV39546.1| pseudouridine synthase [Enterococcus casseliflavus EC20]
Length = 240
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+ +Q + HP ++ K Y+A + G +K+ L+ +++G
Sbjct: 96 RVYPVGRLDYDTSGLLLLTNDGELSQTLMHPKHEVDKVYVAKVKGIADKKQLLPLTKGIR 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
IEG P E+L +++ +HEGRNH+V+ ++K GL + LKR G
Sbjct: 156 IEGRKTAPARFEILSTDQTTQSSIVQLTIHEGRNHQVKNMLKAVGLPVQKLKRENYG 212
>gi|392429097|ref|YP_006470108.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
intermedius JTH08]
gi|419776224|ref|ZP_14302146.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
intermedius SK54]
gi|424788248|ref|ZP_18215007.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
intermedius BA1]
gi|383845635|gb|EID83035.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
intermedius SK54]
gi|391758243|dbj|BAM23860.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
intermedius JTH08]
gi|422113012|gb|EKU16769.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
intermedius BA1]
Length = 241
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G +K L +++G
Sbjct: 93 RIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGVADKEVLRPLTKGVK 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V E+L P R I++ +HEGRNH+V+++ + GL++ L R + G
Sbjct: 153 IDGKKTKPAVYEILKVDPVKNRSIIQLTIHEGRNHQVKKMFEAVGLQVDKLSRTQFGHLN 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|385838381|ref|YP_005876011.1| Ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. cremoris A76]
gi|358749609|gb|AEU40588.1| Ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. cremoris A76]
Length = 239
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HPS + K Y+A ++G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPSHGVDKVYVAKVEGQANKENLRPLTLG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 151 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGT 210
Query: 140 FRL 142
L
Sbjct: 211 LTL 213
>gi|295112967|emb|CBL31604.1| ribosomal large subunit pseudouridine synthase B [Enterococcus sp.
7L76]
Length = 238
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG F+Q ++HP ++ K Y+A I G KR L+ +++G
Sbjct: 94 RIYPVGRLDYDTSGLLLLTNDGSFSQKLTHPKHEVDKVYVAKIKGVPTKRDLLPLAKGIR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + + +HEGRNH+V+++ + G + LKR R G
Sbjct: 154 IDGKRTAPANFQILSADIKTGSSVVELTIHEGRNHQVKKMFQAVGFPVQKLKRERYGELT 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|296393714|ref|YP_003658598.1| pseudouridine synthase [Segniliparus rotundus DSM 44985]
gi|296180861|gb|ADG97767.1| pseudouridine synthase [Segniliparus rotundus DSM 44985]
Length = 272
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
GLP LF VGRLD TTGL++V+NDG+ A ++HPS ++ K YIAT+ G V KR + +
Sbjct: 120 GLP-AGLFHVGRLDADTTGLLLVSNDGELAHRLAHPSYEIPKTYIATVRGVVAKRAVEQL 178
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
G V+E D V L Q D R + I +HEGRN VR + G + L RLR
Sbjct: 179 RAGVVLEDGPAKADEVCLRGSQRD--RTVVEITLHEGRNRIVRRMFDEVGHPVIELARLR 236
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
IG RL DL G L S++ + W +
Sbjct: 237 IGPIRL-GDLRSGALRALSSSEVGAL-WAA 264
>gi|257867652|ref|ZP_05647305.1| pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257873981|ref|ZP_05653634.1| pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257801735|gb|EEV30638.1| pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257808145|gb|EEV36967.1| pseudouridine synthase [Enterococcus casseliflavus EC10]
Length = 240
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+ +Q + HP ++ K Y+A + G +K+ L+ +++G
Sbjct: 96 RVYPVGRLDYDTSGLLLLTNDGELSQTLMHPKHEVDKVYVAKVKGIADKKQLLPLTKGIR 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
IEG P E+L +++ +HEGRNH+V+ ++K GL + LKR G
Sbjct: 156 IEGRKTAPARFEILSTDQTAQSSIVQLTIHEGRNHQVKNMLKAVGLPVQKLKRENYG 212
>gi|251781834|ref|YP_002996136.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|386316360|ref|YP_006012524.1| hypothetical protein SDE12394_02010 [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|410494149|ref|YP_006903995.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
gi|417753425|ref|ZP_12401550.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|242390463|dbj|BAH80922.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|323126647|gb|ADX23944.1| hypothetical protein SDE12394_02010 [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|333770183|gb|EGL47238.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|410439309|emb|CCI61937.1| K06178 ribosomal large subunit pseudouridine synthase B
[Streptococcus dysgalactiae subsp. equisimilis AC-2713]
Length = 240
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LEL 213
>gi|227518731|ref|ZP_03948780.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|227553340|ref|ZP_03983389.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|229545844|ref|ZP_04434569.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|229550036|ref|ZP_04438761.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|255972817|ref|ZP_05423403.1| pseudouridine synthase [Enterococcus faecalis T1]
gi|255975873|ref|ZP_05426459.1| pseudouridine synthase [Enterococcus faecalis T2]
gi|256619043|ref|ZP_05475889.1| pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|256762469|ref|ZP_05503049.1| pseudouridine synthase [Enterococcus faecalis T3]
gi|256853105|ref|ZP_05558475.1| pseudouridine synthase [Enterococcus faecalis T8]
gi|256958960|ref|ZP_05563131.1| pseudouridine synthase [Enterococcus faecalis DS5]
gi|256961947|ref|ZP_05566118.1| pseudouridine synthase [Enterococcus faecalis Merz96]
gi|256965145|ref|ZP_05569316.1| pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|257078991|ref|ZP_05573352.1| pseudouridine synthase [Enterococcus faecalis JH1]
gi|257082570|ref|ZP_05576931.1| pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|257085203|ref|ZP_05579564.1| pseudouridine synthase [Enterococcus faecalis Fly1]
gi|257086764|ref|ZP_05581125.1| pseudouridine synthase [Enterococcus faecalis D6]
gi|257089865|ref|ZP_05584226.1| pseudouridine synthase [Enterococcus faecalis CH188]
gi|257416073|ref|ZP_05593067.1| pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|257419276|ref|ZP_05596270.1| pseudouridine synthase [Enterococcus faecalis T11]
gi|257422639|ref|ZP_05599629.1| pseudouridine synthase [Enterococcus faecalis X98]
gi|293383015|ref|ZP_06628933.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis R712]
gi|293389496|ref|ZP_06633953.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis S613]
gi|294781343|ref|ZP_06746686.1| pseudouridylate synthase [Enterococcus faecalis PC1.1]
gi|300860430|ref|ZP_07106517.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis TUSoD Ef11]
gi|307271038|ref|ZP_07552321.1| hypothetical protein HMPREF9498_03124 [Enterococcus faecalis
TX4248]
gi|307273245|ref|ZP_07554491.1| hypothetical protein HMPREF9514_02011 [Enterococcus faecalis
TX0855]
gi|307278094|ref|ZP_07559178.1| hypothetical protein HMPREF9515_00429 [Enterococcus faecalis
TX0860]
gi|307289085|ref|ZP_07569041.1| hypothetical protein HMPREF9505_02455 [Enterococcus faecalis
TX0109]
gi|307292016|ref|ZP_07571885.1| hypothetical protein HMPREF9509_02313 [Enterococcus faecalis
TX0411]
gi|312900740|ref|ZP_07760037.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
gi|312903287|ref|ZP_07762467.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
gi|312907514|ref|ZP_07766505.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
gi|312910132|ref|ZP_07768979.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
gi|312951473|ref|ZP_07770369.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
gi|384513223|ref|YP_005708316.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis OG1RF]
gi|384518570|ref|YP_005705875.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis 62]
gi|397699861|ref|YP_006537649.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis D32]
gi|422686010|ref|ZP_16744223.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
gi|422689388|ref|ZP_16747500.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
gi|422693045|ref|ZP_16751060.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
gi|422694961|ref|ZP_16752949.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
gi|422701734|ref|ZP_16759574.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
gi|422704453|ref|ZP_16762263.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
gi|422706693|ref|ZP_16764391.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
gi|422708450|ref|ZP_16765978.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
gi|422714643|ref|ZP_16771369.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
gi|422715901|ref|ZP_16772617.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
gi|422718900|ref|ZP_16775551.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
gi|422722541|ref|ZP_16779091.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
gi|422727026|ref|ZP_16783469.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
gi|422728927|ref|ZP_16785333.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
gi|422733600|ref|ZP_16789902.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
gi|422734333|ref|ZP_16790627.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
gi|422739697|ref|ZP_16794870.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
gi|424673241|ref|ZP_18110184.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis 599]
gi|424676784|ref|ZP_18113655.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV103]
gi|424681398|ref|ZP_18118185.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV116]
gi|424683588|ref|ZP_18120338.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV129]
gi|424686508|ref|ZP_18123176.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV25]
gi|424690219|ref|ZP_18126754.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV31]
gi|424695313|ref|ZP_18131696.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV37]
gi|424696948|ref|ZP_18133289.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV41]
gi|424699666|ref|ZP_18135877.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV62]
gi|424703321|ref|ZP_18139455.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV63]
gi|424706012|ref|ZP_18142025.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV65]
gi|424717157|ref|ZP_18146455.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV68]
gi|424720736|ref|ZP_18149837.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV72]
gi|424724286|ref|ZP_18153235.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV73]
gi|424733873|ref|ZP_18162428.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV81]
gi|424743824|ref|ZP_18172129.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV85]
gi|424749523|ref|ZP_18177626.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV93]
gi|424761339|ref|ZP_18188921.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis R508]
gi|428766978|ref|YP_007153089.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis str. Symbioflor 1]
gi|430360999|ref|ZP_19426495.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis OG1X]
gi|430367328|ref|ZP_19427846.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis M7]
gi|227073812|gb|EEI11775.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|227177527|gb|EEI58499.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|229304842|gb|EEN70838.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|229309043|gb|EEN75030.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|255963835|gb|EET96311.1| pseudouridine synthase [Enterococcus faecalis T1]
gi|255968745|gb|EET99367.1| pseudouridine synthase [Enterococcus faecalis T2]
gi|256598570|gb|EEU17746.1| pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|256683720|gb|EEU23415.1| pseudouridine synthase [Enterococcus faecalis T3]
gi|256711564|gb|EEU26602.1| pseudouridine synthase [Enterococcus faecalis T8]
gi|256949456|gb|EEU66088.1| pseudouridine synthase [Enterococcus faecalis DS5]
gi|256952443|gb|EEU69075.1| pseudouridine synthase [Enterococcus faecalis Merz96]
gi|256955641|gb|EEU72273.1| pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|256987021|gb|EEU74323.1| pseudouridine synthase [Enterococcus faecalis JH1]
gi|256990600|gb|EEU77902.1| pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|256993233|gb|EEU80535.1| pseudouridine synthase [Enterococcus faecalis Fly1]
gi|256994794|gb|EEU82096.1| pseudouridine synthase [Enterococcus faecalis D6]
gi|256998677|gb|EEU85197.1| pseudouridine synthase [Enterococcus faecalis CH188]
gi|257157901|gb|EEU87861.1| pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|257161104|gb|EEU91064.1| pseudouridine synthase [Enterococcus faecalis T11]
gi|257164463|gb|EEU94423.1| pseudouridine synthase [Enterococcus faecalis X98]
gi|291079680|gb|EFE17044.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis R712]
gi|291081113|gb|EFE18076.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis S613]
gi|294451573|gb|EFG20032.1| pseudouridylate synthase [Enterococcus faecalis PC1.1]
gi|300849469|gb|EFK77219.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis TUSoD Ef11]
gi|306497014|gb|EFM66562.1| hypothetical protein HMPREF9509_02313 [Enterococcus faecalis
TX0411]
gi|306499794|gb|EFM69155.1| hypothetical protein HMPREF9505_02455 [Enterococcus faecalis
TX0109]
gi|306505491|gb|EFM74677.1| hypothetical protein HMPREF9515_00429 [Enterococcus faecalis
TX0860]
gi|306510230|gb|EFM79254.1| hypothetical protein HMPREF9514_02011 [Enterococcus faecalis
TX0855]
gi|306512536|gb|EFM81185.1| hypothetical protein HMPREF9498_03124 [Enterococcus faecalis
TX4248]
gi|310626542|gb|EFQ09825.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
gi|310630439|gb|EFQ13722.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
gi|310633163|gb|EFQ16446.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
gi|311289405|gb|EFQ67961.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
gi|311292221|gb|EFQ70777.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
gi|315027286|gb|EFT39218.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
gi|315029405|gb|EFT41337.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
gi|315033949|gb|EFT45881.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
gi|315036958|gb|EFT48890.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
gi|315144437|gb|EFT88453.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
gi|315147244|gb|EFT91260.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
gi|315150557|gb|EFT94573.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
gi|315152504|gb|EFT96520.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
gi|315155782|gb|EFT99798.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
gi|315158051|gb|EFU02068.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
gi|315160465|gb|EFU04482.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
gi|315163994|gb|EFU08011.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
gi|315169055|gb|EFU13072.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
gi|315169707|gb|EFU13724.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
gi|315575887|gb|EFU88078.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
gi|315577727|gb|EFU89918.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
gi|315580539|gb|EFU92730.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
gi|323480703|gb|ADX80142.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis 62]
gi|327535112|gb|AEA93946.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis OG1RF]
gi|397336500|gb|AFO44172.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis D32]
gi|402351105|gb|EJU85997.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV116]
gi|402353051|gb|EJU87887.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis 599]
gi|402356404|gb|EJU91138.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV103]
gi|402364586|gb|EJU99021.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV129]
gi|402364906|gb|EJU99337.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV31]
gi|402367362|gb|EJV01703.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV25]
gi|402368490|gb|EJV02803.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV37]
gi|402375595|gb|EJV09575.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV62]
gi|402377277|gb|EJV11188.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV41]
gi|402385326|gb|EJV18866.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV63]
gi|402386505|gb|EJV20011.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV68]
gi|402388655|gb|EJV22083.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV65]
gi|402390883|gb|EJV24203.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV81]
gi|402393207|gb|EJV26437.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV72]
gi|402395427|gb|EJV28533.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV73]
gi|402399953|gb|EJV32807.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV85]
gi|402402323|gb|EJV35044.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis R508]
gi|402407774|gb|EJV40279.1| pseudouridine synthase B, ribosomal large subunit [Enterococcus
faecalis ERV93]
gi|427185151|emb|CCO72375.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis str. Symbioflor 1]
gi|429512655|gb|ELA02256.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis OG1X]
gi|429516678|gb|ELA06158.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
faecalis M7]
Length = 238
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG F+Q ++HP ++ K Y+A I G KR L+ +++G
Sbjct: 94 RIYPVGRLDYDTSGLLLLTNDGSFSQKLTHPKHEVDKVYVAKIKGVPTKRDLLPLAKGIR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + + +HEGRNH+V+++ + G + LKR R G
Sbjct: 154 IDGKRTAPANFQILSADIKTGSSVVELTIHEGRNHQVKKMFQAVGFPVQKLKRERYGELT 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|306827950|ref|ZP_07461217.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes ATCC 10782]
gi|304429869|gb|EFM32911.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes ATCC 10782]
Length = 240
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 75/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF ++HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDTMTHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 IVIDGKKTKPARYNIVRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 VDL 213
>gi|417928211|ref|ZP_12571599.1| pseudouridylate synthase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340766085|gb|EGR88611.1| pseudouridylate synthase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
Length = 240
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LEL 213
>gi|288905991|ref|YP_003431213.1| ribosomal large subunit pseudouridine synthase [Streptococcus
gallolyticus UCN34]
gi|306832010|ref|ZP_07465165.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325978958|ref|YP_004288674.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|386338433|ref|YP_006034602.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288732717|emb|CBI14291.1| ribosomal large subunit pseudouridine synthase [Streptococcus
gallolyticus UCN34]
gi|304425936|gb|EFM29053.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178886|emb|CBZ48930.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|334281069|dbj|BAK28643.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 241
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G V
Sbjct: 93 RIYPVGRLDWDTTGLLILTNDGDFTDEMIHPRNEIDKVYLARVKGIATKENLRPLTRGVV 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++ P+ R + + +HEGRNH+V+++ ++ GL + L R + G
Sbjct: 153 IDGKKTKPARYNIVKVDPEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTQFGTLD 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|332686546|ref|YP_004456320.1| ribosomal large subunit pseudouridine synthase B [Melissococcus
plutonius ATCC 35311]
gi|332370555|dbj|BAK21511.1| ribosomal large subunit pseudouridine synthase B [Melissococcus
plutonius ATCC 35311]
Length = 236
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+IVTNDG Q ++HPS ++ K Y+A + G ++ L+ +++G
Sbjct: 94 RVYPVGRLDYDTTGLLIVTNDGSLTQQLTHPSHEIDKVYVAKVKGIALRKTLLPLTKGIK 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L +++ +HEGRNH+V++++ G + LKR RIG
Sbjct: 154 IKGRKTAPANFQILSVDTKKQTSLVQLTIHEGRNHQVKDMLDTVGYPVQKLKRERIGDLT 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|408401101|ref|YP_006859064.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|407967329|dbj|BAM60567.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
dysgalactiae subsp. equisimilis RE378]
Length = 257
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 108 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 167
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 168 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 227
Query: 140 FRL 142
L
Sbjct: 228 LEL 230
>gi|374338593|ref|YP_005095309.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
macedonicus ACA-DC 198]
gi|372284709|emb|CCF02998.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
macedonicus ACA-DC 198]
Length = 241
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G V
Sbjct: 93 RIYPVGRLDWDTTGLLILTNDGDFTDEMIHPRNEIDKVYLARVKGIATKENLRPLTRGVV 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++ P+ R + + +HEGRNH+V+++ ++ GL + L R + G
Sbjct: 153 IDGKKTKPARYNIVKVDPEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTQFGTLD 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|379705848|ref|YP_005204307.1| ribosomal large subunit pseudouridine synthase [Streptococcus
infantarius subsp. infantarius CJ18]
gi|374682547|gb|AEZ62836.1| ribosomal large subunit pseudouridine synthase [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 241
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G V
Sbjct: 93 RIYPVGRLDWDTTGLLILTNDGDFTDEMIHPRNEIDKVYLARVKGLATKENLRPLTRGVV 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++ P+ R + + +HEGRNH+V+++ ++ GL + L R G
Sbjct: 153 IDGKKTKPARYNIIKVDPEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTNFGTLD 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|320547375|ref|ZP_08041664.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
equinus ATCC 9812]
gi|320447971|gb|EFW88725.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
equinus ATCC 9812]
Length = 241
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G V
Sbjct: 93 RIYPVGRLDWDTTGLLILTNDGDFTDEMIHPRNEIDKVYLARVKGIATKENLRPLTRGVV 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++ P+ R + + +HEGRNH+V+++ ++ GL + L R G
Sbjct: 153 IDGKKTKPARYNIIKVDPEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTNFGTLD 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|299821620|ref|ZP_07053508.1| ribosomal large subunit pseudouridine synthase B [Listeria grayi
DSM 20601]
gi|299817285|gb|EFI84521.1| ribosomal large subunit pseudouridine synthase B [Listeria grayi
DSM 20601]
Length = 243
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++K+YIA + G K L + G V
Sbjct: 94 RLYPVGRLDYETSGLLLMTNDGDFANKLMHPKHEVEKQYIARVKGIPTKEQLRRLERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V+L + I I +HEGRN +VR++ ++ G + L R F
Sbjct: 154 IDGRKTAPAKVKLRSADKAKEKAIIEITIHEGRNRQVRKMFESIGFPVQKLMR-EAYAFL 212
Query: 142 LPSDLGIGMHVELKQSDLKLMGWKS 166
+ + G EL ++KL+ ++
Sbjct: 213 NVAGMNAGERRELSHHEVKLLKTQA 237
>gi|222152585|ref|YP_002561760.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
uberis 0140J]
gi|222113396|emb|CAR41051.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
uberis 0140J]
Length = 240
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRNHQVKKMFESVGLIVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|306834130|ref|ZP_07467250.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
bovis ATCC 700338]
gi|304423703|gb|EFM26849.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
bovis ATCC 700338]
Length = 241
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G V
Sbjct: 93 RIYPVGRLDWDTTGLLILTNDGDFTDEMIHPRNEIDKVYLARVKGLATKENLRPLTRGVV 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++ P+ R + + +HEGRNH+V+++ ++ GL + L R G
Sbjct: 153 IDGKKTKPARYNIIKVDPEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTNFGTLD 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|406659523|ref|ZP_11067661.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
iniae 9117]
gi|405577632|gb|EKB51780.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
iniae 9117]
Length = 240
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKLIHPRNEVDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|379727440|ref|YP_005319625.1| ribosomal large subunit pseudouridine synthase B [Melissococcus
plutonius DAT561]
gi|376318343|dbj|BAL62130.1| ribosomal large subunit pseudouridine synthase B [Melissococcus
plutonius DAT561]
Length = 236
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+IVTNDG Q ++HPS ++ K Y+A + G ++ L+ +++G
Sbjct: 94 RVYPVGRLDYDTTGLLIVTNDGSLTQQLTHPSHEIDKVYVAKVKGIALRKTLLPLTKGIK 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L +++ +HEGRNH+V++++ G + LKR RIG
Sbjct: 154 IKGRKTAPANFQILSVDTKKQTSVVQLTIHEGRNHQVKDMLDTVGYPVQKLKRERIGDLT 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|423068038|ref|ZP_17056826.1| hypothetical protein HMPREF9682_00047 [Streptococcus intermedius
F0395]
gi|355366929|gb|EHG14642.1| hypothetical protein HMPREF9682_00047 [Streptococcus intermedius
F0395]
Length = 241
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G +K L +++G
Sbjct: 93 RIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGIADKEVLRPLTKGVK 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V E+L P R I++ +HEGRNH+V+++ + GL++ L R + G
Sbjct: 153 IDGKKTKPAVYEILKVDPVKNRSIIQLTIHEGRNHQVKKMFEAVGLQVDKLSRTQFGHLN 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|145348269|ref|XP_001418577.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578806|gb|ABO96870.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 230
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
LF+ + + PG PRLFTVGRLDVATTGL+++T DGD++Q V+HPSS++ K+Y+
Sbjct: 92 LFEQWRDEFKAAYPGKLPPRLFTVGRLDVATTGLLLLTTDGDWSQRVAHPSSEVVKQYVV 151
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
T + + + A+++GT ++G P VE + P RI + V +GRN EVR L
Sbjct: 152 TANNKPTRAQIAAMAKGTEVDGARVVPVRVESMGADGG-PANRILVEVVDGRNREVRVLC 210
Query: 123 KNAGLKLYSLKRLRIGGFRL 142
+AG+ + +LKR R+GG R+
Sbjct: 211 ADAGVDVKNLKRTRVGGLRM 230
>gi|392330733|ref|ZP_10275348.1| hypothetical protein SCAZ3_02320 [Streptococcus canis FSL Z3-227]
gi|391418412|gb|EIQ81224.1| hypothetical protein SCAZ3_02320 [Streptococcus canis FSL Z3-227]
Length = 240
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LAL 213
>gi|421276685|ref|ZP_15727506.1| pseudouridine synthase [Streptococcus mitis SPAR10]
gi|395876891|gb|EJG87963.1| pseudouridine synthase [Streptococcus mitis SPAR10]
Length = 241
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L +L+ +GRLD TTGL+++TN+G + HP + K Y ++G + H+
Sbjct: 90 LQSDQLYAIGRLDRDTTGLLLLTNNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQQFK 149
Query: 78 EGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
G V ++GT C P +E+L P + R I I EG+ H+V+++ + G+K+ +LKR++
Sbjct: 150 NGIVFLDGTICKPAQLEILSSSPSLSRATITI--SEGKFHQVKKMFLSVGVKVTALKRVQ 207
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G F L SDL G + L + +LK++
Sbjct: 208 FGDFLLDSDLAEGQYRHLNKEELKII 233
>gi|401684218|ref|ZP_10816101.1| pseudouridylate synthase [Streptococcus sp. BS35b]
gi|418974829|ref|ZP_13522738.1| pseudouridylate synthase [Streptococcus oralis SK1074]
gi|383348200|gb|EID26159.1| pseudouridylate synthase [Streptococcus oralis SK1074]
gi|400186523|gb|EJO20735.1| pseudouridylate synthase [Streptococcus sp. BS35b]
Length = 241
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 88 PDIQSDQLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVMVNGLLTPEHIQK 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +E+L P R I + EG+ H+V+++ + G+K+ SLKR
Sbjct: 148 FKDGIVFLDGTTCKPAQLEILSSSP--TESRATITISEGKFHQVKKMFLSVGVKVVSLKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLK 160
++ G F L S+L G++ L Q +L+
Sbjct: 206 VQFGDFTLDSELAEGLYRFLNQKELE 231
>gi|374814101|ref|ZP_09717838.1| RNA pseudouridylate synthase family protein [Treponema primitia
ZAS-1]
Length = 248
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+PR RL+ VGRLD ++GLII TNDGDFA VSHPS+K++KEY+ G + +
Sbjct: 106 MPRERLYNVGRLDYRSSGLIIFTNDGDFAAKVSHPSAKIKKEYLVEATGPIPDTMIAEFQ 165
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+G IEG +E L R IR+V+ EG+N E+R + + L L R+RI
Sbjct: 166 KGLEIEGVFYRSTEIERL------GRKSIRVVLIEGKNREIRRVFSHFHLHPSKLHRIRI 219
Query: 138 GGFRLPSDLGIGMHVELKQSDLKLM 162
G L S LG G L + + +++
Sbjct: 220 GPVVLGS-LGAGESRALTEEEKEIL 243
>gi|315223141|ref|ZP_07865009.1| conserved hypothetical protein [Streptococcus anginosus F0211]
gi|315187830|gb|EFU21577.1| conserved hypothetical protein [Streptococcus anginosus F0211]
Length = 241
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 74/121 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G +K L +++G
Sbjct: 93 RIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGVADKEVLRPLTKGVE 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R + G
Sbjct: 153 VDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTQFGHLN 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|12724251|gb|AAK05373.1|AE006360_2 pseudouridine synthase [Lactococcus lactis subsp. lactis Il1403]
Length = 257
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HP + K Y+A ++G NK +L ++ G
Sbjct: 109 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPRHGVDKVYVAKVEGQANKENLRPLTLG 168
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 169 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGS 228
Query: 140 FRL 142
L
Sbjct: 229 LTL 231
>gi|421490510|ref|ZP_15937882.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
anginosus SK1138]
gi|400373000|gb|EJP25935.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
anginosus SK1138]
Length = 241
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 74/121 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G +K L +++G
Sbjct: 93 RIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGVADKEVLRPLTKGVE 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R + G
Sbjct: 153 VDGKKTKPAVYEILKVDPIKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTQFGHLN 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|319938699|ref|ZP_08013063.1| pseudouridine synthase [Streptococcus anginosus 1_2_62CV]
gi|335031570|ref|ZP_08524999.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
anginosus SK52 = DSM 20563]
gi|319811749|gb|EFW08015.1| pseudouridine synthase [Streptococcus anginosus 1_2_62CV]
gi|333769227|gb|EGL46365.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
anginosus SK52 = DSM 20563]
Length = 241
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 74/121 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G +K L +++G
Sbjct: 93 RIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGVADKEVLRPLTKGVE 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R + G
Sbjct: 153 VDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTQFGHLN 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|418964441|ref|ZP_13516245.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
anginosus subsp. whileyi CCUG 39159]
gi|383340536|gb|EID18830.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
anginosus subsp. whileyi CCUG 39159]
Length = 241
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 74/121 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G +K L +++G
Sbjct: 93 RIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGVADKEVLRPLTKGVE 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V E+L P R +++ +HEGRNH+V+++ + GL++ L R + G
Sbjct: 153 VDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKMFEAVGLQVDKLSRTQFGHLN 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|400289702|ref|ZP_10791729.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
ratti FA-1 = DSM 20564]
gi|399920493|gb|EJN93310.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
ratti FA-1 = DSM 20564]
Length = 242
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G +K +L ++ G
Sbjct: 91 QERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYVARVKGIADKNNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+I+G P +L + R + +V+HEGRNH+V+++ + GL + L R R G
Sbjct: 151 VLIDGRTTKPARYTILKTDREKNRSVVELVIHEGRNHQVKKMFEAVGLTVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|139474355|ref|YP_001129071.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes str. Manfredo]
gi|134272602|emb|CAM30869.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes str. Manfredo]
Length = 240
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 IVIDGKKTKPARYNIVRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 VNL 213
>gi|312868359|ref|ZP_07728559.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
parasanguinis F0405]
gi|322390066|ref|ZP_08063601.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
parasanguinis ATCC 903]
gi|417918273|ref|ZP_12561825.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
parasanguinis SK236]
gi|419800319|ref|ZP_14325605.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
parasanguinis F0449]
gi|311096104|gb|EFQ54348.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
parasanguinis F0405]
gi|321143193|gb|EFX38636.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
parasanguinis ATCC 903]
gi|342828728|gb|EGU63094.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
parasanguinis SK236]
gi|385695479|gb|EIG26039.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
parasanguinis F0449]
Length = 243
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 93 RIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRGVT 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I+G P E+L + R +++ +HEGRNH+V+++ + GL + L R + G
Sbjct: 153 IDGKKTKPATYEILKVDVEKNRSVVQLTIHEGRNHQVKKMFEAVGLLVDKLSRTQFGNL 211
>gi|337282514|ref|YP_004621985.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
parasanguinis ATCC 15912]
gi|387880067|ref|YP_006310370.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
parasanguinis FW213]
gi|335370107|gb|AEH56057.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
parasanguinis ATCC 15912]
gi|386793517|gb|AFJ26552.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
parasanguinis FW213]
Length = 243
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 93 RIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRGVT 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I+G P E+L + R +++ +HEGRNH+V+++ + GL + L R + G
Sbjct: 153 IDGKKTKPATYEILKVDVEKNRSVVQLTIHEGRNHQVKKMFEAVGLLVDKLSRTQFGNL 211
>gi|71910124|ref|YP_281674.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS5005]
gi|71852906|gb|AAZ50929.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS5005]
Length = 248
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 99 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 158
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 159 IVIDGKKTKPARYNIVRVEADKSRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 218
Query: 140 FRL 142
L
Sbjct: 219 VDL 221
>gi|403383218|ref|ZP_10925275.1| ribosomal large subunit pseudouridine synthase B [Kurthia sp. JC30]
Length = 243
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F VGRLD TTG++I+TNDG+FA ++HP ++K Y+ATI G + + + + G
Sbjct: 92 KERIFPVGRLDFDTTGVLILTNDGEFANLLTHPKYNVEKTYVATIQGVLKREDVRKLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++E P V ++ + + I +HEGRN +VR + + G ++ LKR + G
Sbjct: 152 VMLEDGKTAPARVRIISADERKGKSIVAITIHEGRNRQVRRMFEAVGHRVSKLKREQF-G 210
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
F P L G EL ++K +
Sbjct: 211 FLTPFGLNAGEWRELTPHEVKQL 233
>gi|30024033|ref|NP_267431.2| pseudouridine synthase [Lactococcus lactis subsp. lactis Il1403]
Length = 239
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HP + K Y+A ++G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPRHGVDKVYVAKVEGQANKENLRPLTLG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 151 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGS 210
Query: 140 FRL 142
L
Sbjct: 211 LTL 213
>gi|258544383|ref|ZP_05704617.1| ribosomal large subunit pseudouridine synthase B [Cardiobacterium
hominis ATCC 15826]
gi|258520387|gb|EEV89246.1| ribosomal large subunit pseudouridine synthase B [Cardiobacterium
hominis ATCC 15826]
Length = 260
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L + R ++GRLD+ T GL++ TNDG+ A + HPS+++++EY + G VN+ L A
Sbjct: 97 PKLRQGRWVSIGRLDLNTAGLLLFTNDGELANRLMHPSAEIEREYWVRVAGEVNEDTLQA 156
Query: 76 ISEGTVIE-GTHCTPDVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ G +E G C DV L D + +V+ EGRN EVR L + G ++ L
Sbjct: 157 LRNGLELEDGFACFDDVQPLQALHEDDTQYNRYFSVVLKEGRNREVRRLWEAVGCQVSRL 216
Query: 133 KRLRIGGFRLPSDLGIG 149
KR+R G LP +L G
Sbjct: 217 KRIRFGNLWLPKNLAAG 233
>gi|228476518|ref|ZP_04061208.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
salivarius SK126]
gi|340398098|ref|YP_004727123.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|387762036|ref|YP_006069013.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
salivarius 57.I]
gi|387783362|ref|YP_006069445.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
gi|418017121|ref|ZP_12656680.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
salivarius M18]
gi|421451650|ref|ZP_15901011.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
salivarius K12]
gi|228251939|gb|EEK10985.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
salivarius SK126]
gi|338742091|emb|CCB92596.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|338744244|emb|CCB94610.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
gi|339292803|gb|AEJ54150.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
salivarius 57.I]
gi|345527814|gb|EGX31122.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
salivarius M18]
gi|400182081|gb|EJO16343.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
salivarius K12]
Length = 241
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIKVDHEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|15674518|ref|NP_268692.1| hypothetical protein SPy_0369 [Streptococcus pyogenes SF370]
gi|410679996|ref|YP_006932398.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes A20]
gi|13621621|gb|AAK33413.1| putative hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|395453370|dbj|BAM29709.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes M1 476]
gi|409692585|gb|AFV37445.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes A20]
Length = 240
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 IVIDGKKTKPARYNIVRVEADKSRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 VDL 213
>gi|397905110|ref|ZP_10505981.1| Ribosomal large subunit pseudouridine synthase B ## LSU Psi2605
[Caloramator australicus RC3]
gi|397161759|emb|CCJ33315.1| Ribosomal large subunit pseudouridine synthase B ## LSU Psi2605
[Caloramator australicus RC3]
Length = 234
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDFA + HPS ++ K YIA ++G ++ L G
Sbjct: 92 KERIYPVGRLDYDTSGLLILTNDGDFAYKLMHPSKEVDKVYIAEVEGIPTEKELEMFRNG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IE + +E+L +RIV+HEG+N +VR++ + G K+ LKR++IG
Sbjct: 152 LKIEDYITSKAKIEILKTID--KNAIVRIVIHEGKNRQVRKMCEKIGHKVLKLKRVQIGK 209
Query: 140 FRLPS 144
+L S
Sbjct: 210 IKLGS 214
>gi|422699244|ref|ZP_16757117.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
gi|315172332|gb|EFU16349.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
Length = 238
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG F+Q ++HP ++ K Y+A I G KR L+ + +G
Sbjct: 94 RIYPVGRLDYDTSGLLLLTNDGSFSQKLTHPKHEVDKVYVAKIKGVPTKRDLLPLVKGIR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + + +HEGRNH+V+++ + G + LKR R G
Sbjct: 154 IDGKRTAPANFQILSADIKTGSSVVELTIHEGRNHQVKKMFQAVGFPVQKLKRERYGELT 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|291532977|emb|CBL06090.1| ribosomal large subunit pseudouridine synthase B [Megamonas
hypermegale ART12/1]
Length = 173
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F +GRLD T GL+++TNDG+F + HP ++ K Y+A IDG +N L ++ G
Sbjct: 31 RIFPIGRLDYNTEGLLLLTNDGEFMNKLLHPKYEIGKTYVARIDGIINMEDLDKLANGVK 90
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V L + R+ I ++EG+N +VR + K G ++ +LKR+ G
Sbjct: 91 LEDGKTAPADVYLDSINKTLKESRVEITIYEGKNRQVRRMFKALGYEVKALKRIAFAGLT 150
Query: 142 LPSDLGIGMHVELKQSDL 159
L S L G + +L +++L
Sbjct: 151 L-SKLKRGEYRKLTETEL 167
>gi|322373877|ref|ZP_08048412.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
C150]
gi|321277249|gb|EFX54319.1| ribosomal large subunit pseudouridine synthase B [Streptococcus sp.
C150]
Length = 241
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIVKVDHEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|385830806|ref|YP_005868619.1| ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. lactis CV56]
gi|326406814|gb|ADZ63885.1| ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. lactis CV56]
gi|374673328|dbj|BAL51219.1| pseudouridylate synthase [Lactococcus lactis subsp. lactis IO-1]
Length = 257
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HP + K Y+A ++G NK +L ++ G
Sbjct: 109 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPRHGVDKVYVAKVEGQANKENLRPLTLG 168
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 169 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGT 228
Query: 140 FRL 142
L
Sbjct: 229 LTL 231
>gi|281491795|ref|YP_003353775.1| ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. lactis KF147]
gi|281375509|gb|ADA65019.1| Ribosomal large subunit pseudouridine synthase B [Lactococcus
lactis subsp. lactis KF147]
Length = 257
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HP + K Y+A ++G NK +L ++ G
Sbjct: 109 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPRHGVDKVYVAKVEGQANKENLRPLTLG 168
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 169 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGT 228
Query: 140 FRL 142
L
Sbjct: 229 LTL 231
>gi|418027995|ref|ZP_12666587.1| tRNA pseudouridine(38-40) synthase [Streptococcus thermophilus CNCM
I-1630]
gi|354688855|gb|EHE88879.1| tRNA pseudouridine(38-40) synthase [Streptococcus thermophilus CNCM
I-1630]
Length = 241
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTQPAHYNIIKVDHEKNRSVVELTIHEGRNHQVKKMFESVGLIVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|283769102|ref|ZP_06342007.1| pseudouridylate synthase [Bulleidia extructa W1219]
gi|283104288|gb|EFC05666.1| pseudouridylate synthase [Bulleidia extructa W1219]
Length = 242
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F VGRLD TTGL++VTNDG+FA A+ HPS + K Y ++G + L + +G
Sbjct: 92 KQRIFPVGRLDYETTGLLLVTNDGEFANAMMHPSHHMDKIYEVYVNGYLEDHMLTKLKKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E P VE+L + RIR+ + EG+N EVR ++ G ++++L+R+
Sbjct: 152 IPLEDGMTLPASVEVLERSRKTNKTRIRLTIQEGKNREVRRMMAYFGFEVHTLQRIGYSF 211
Query: 140 FRLPSDLGIGMHVELKQSDLK 160
L +L G + LK+ ++K
Sbjct: 212 LNL-GNLRQGEYRRLKKFEVK 231
>gi|445371896|ref|ZP_21426055.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus MTCC 5460]
gi|445387274|ref|ZP_21427773.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus MTCC 5461]
gi|444751133|gb|ELW75899.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus MTCC 5461]
gi|444751427|gb|ELW76176.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus MTCC 5460]
Length = 241
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTQPAHYNIIKVDHEKNRSVVELTIHEGRNHQVKKMFESVGLIVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|417936718|ref|ZP_12580025.1| pseudouridylate synthase [Streptococcus infantis X]
gi|343400234|gb|EGV12754.1| pseudouridylate synthase [Streptococcus infantis X]
Length = 179
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L +L+ +GRLD TTGL+++TN+G + HP + K Y ++G + H+
Sbjct: 28 LQSDQLYAIGRLDRDTTGLLLLTNNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQQFK 87
Query: 78 EGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
G V ++GT C P +E+L P I R I I EG+ H+V+++ + G+K+ +LKR++
Sbjct: 88 NGIVFLDGTICKPAQLEILSSSPSISRATITI--SEGKFHQVKKMFLSVGVKVTALKRVQ 145
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G F L DL G + L Q +LK++
Sbjct: 146 FGDFLLDPDLAEGQYRLLNQEELKII 171
>gi|94991824|ref|YP_599923.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS2096]
gi|94545332|gb|ABF35379.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS2096]
Length = 220
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 71 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 130
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 131 IVIDGKKTKPARYNIVRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 190
Query: 140 FRL 142
L
Sbjct: 191 VDL 193
>gi|55820359|ref|YP_138801.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus LMG 18311]
gi|55822249|ref|YP_140690.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus CNRZ1066]
gi|116627195|ref|YP_819814.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus LMD-9]
gi|55736344|gb|AAV59986.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus LMG 18311]
gi|55738234|gb|AAV61875.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus CNRZ1066]
gi|116100472|gb|ABJ65618.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus LMD-9]
Length = 255
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 105 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 164
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 165 VVIDGKKTQPAHYNIIKVDHEKNRSVVELTIHEGRNHQVKKMFESVGLIVDKLSRTRFGT 224
Query: 140 FRL 142
L
Sbjct: 225 LDL 227
>gi|19745526|ref|NP_606662.1| hypothetical protein spyM18_0418 [Streptococcus pyogenes MGAS8232]
gi|71902965|ref|YP_279768.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS6180]
gi|94987940|ref|YP_596041.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS9429]
gi|94993700|ref|YP_601798.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS10750]
gi|19747645|gb|AAL97161.1| putative hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|71802060|gb|AAX71413.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS6180]
gi|94541448|gb|ABF31497.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS9429]
gi|94543322|gb|ABF33370.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS10270]
gi|94547208|gb|ABF37254.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS10750]
Length = 248
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 99 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 158
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 159 IVIDGKKTKPARYNIVRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 218
Query: 140 FRL 142
L
Sbjct: 219 VDL 221
>gi|386085961|ref|YP_006001835.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
gi|386343894|ref|YP_006040058.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus JIM 8232]
gi|387909059|ref|YP_006339365.1| Pseudouridine synthase [Streptococcus thermophilus MN-ZLW-002]
gi|312277674|gb|ADQ62331.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
gi|339277355|emb|CCC19103.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
thermophilus JIM 8232]
gi|387573994|gb|AFJ82700.1| Pseudouridine synthase [Streptococcus thermophilus MN-ZLW-002]
Length = 255
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 105 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 164
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 165 VVIDGKKTQPAHYNIIKVDHEKNRSVVELTIHEGRNHQVKKMFESVGLIVDKLSRTRFGT 224
Query: 140 FRL 142
L
Sbjct: 225 LDL 227
>gi|21909805|ref|NP_664073.1| ribosomal large subunit pseudouridine synthase [Streptococcus
pyogenes MGAS315]
gi|28896502|ref|NP_802852.1| hypothetical protein SPs1590 [Streptococcus pyogenes SSI-1]
gi|383479494|ref|YP_005388388.1| ribosomal large subunit pseudouridine synthase protein RsuA
[Streptococcus pyogenes MGAS15252]
gi|383493417|ref|YP_005411093.1| ribosomal large subunit pseudouridine synthase protein RsuA
[Streptococcus pyogenes MGAS1882]
gi|386362171|ref|YP_006071502.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes Alab49]
gi|417857465|ref|ZP_12502524.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes HKU QMH11M0907901]
gi|421893487|ref|ZP_16323989.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes NS88.2]
gi|21903991|gb|AAM78876.1| putative ribosomal large subunit pseudouridine synthase
[Streptococcus pyogenes MGAS315]
gi|28811756|dbj|BAC64685.1| putative hypothetical protein [Streptococcus pyogenes SSI-1]
gi|350276580|gb|AEQ23948.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes Alab49]
gi|378927484|gb|AFC65690.1| ribosomal large subunit pseudouridine synthase protein RsuA
[Streptococcus pyogenes MGAS15252]
gi|378929145|gb|AFC67562.1| ribosomal large subunit pseudouridine synthase protein RsuA
[Streptococcus pyogenes MGAS1882]
gi|379980762|emb|CCG27711.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes NS88.2]
gi|387934420|gb|EIK42533.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes HKU QMH11M0907901]
Length = 240
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 IVIDGKKTKPARYNIVRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 VDL 213
>gi|50913682|ref|YP_059654.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS10394]
gi|50902756|gb|AAT86471.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
pyogenes MGAS10394]
Length = 248
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 99 KERIYPVGRLDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRG 158
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 159 IVIDGKKTKPARYNIVHVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 218
Query: 140 FRL 142
L
Sbjct: 219 VDL 221
>gi|375085568|ref|ZP_09732201.1| pseudouridine synthase [Megamonas funiformis YIT 11815]
gi|374567173|gb|EHR38403.1| pseudouridine synthase [Megamonas funiformis YIT 11815]
Length = 243
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R+F +GRLD T GL+++TNDG+F + HP ++ K Y+A IDG +N L ++ G
Sbjct: 96 ERIFPIGRLDYNTEGLLLLTNDGEFMNKLLHPKYEIGKTYVARIDGIINMEDLDKLANGV 155
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+E P V L + R+ I ++EG+N +VR + K G ++ +LKR+ G
Sbjct: 156 KLEDGKTAPADVYLDSINKTLKESRVEITIYEGKNRQVRRMFKALGYEVKALKRIAFAGL 215
Query: 141 RLPSDLGIGMHVELKQSDL 159
L S L G + +L +++L
Sbjct: 216 TL-SKLKRGEYRKLTETEL 233
>gi|418037525|ref|ZP_12675904.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|354694468|gb|EHE94127.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 239
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HP + K Y+A ++G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLLLTNDGEFTNMMTHPRHGVDKVYVAKVEGQANKENLRPLTLG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + + +HEG+NH+V+++ AGL + L R++ G
Sbjct: 151 MTIEGKKVSPARYEIIKQEKTKNHSIVSLTIHEGQNHQVKKMFAAAGLPVQKLSRIQYGT 210
Query: 140 FRL 142
L
Sbjct: 211 LTL 213
>gi|219669430|ref|YP_002459865.1| pseudouridine synthase [Desulfitobacterium hafniense DCB-2]
gi|219539690|gb|ACL21429.1| pseudouridine synthase [Desulfitobacterium hafniense DCB-2]
Length = 255
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P +PR R++ VGRLD T+GL+++TNDGD A + HPS ++K Y + + ++ L
Sbjct: 103 PKIPR-RVYPVGRLDYDTSGLLLLTNDGDLAHRLMHPSYGVEKTYRVEVGEKIPEQALKR 161
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G ++E P + + P+ P I +HEGRN +VR + K G L +LKRL
Sbjct: 162 LEKGVLLEDGKTAPARIREVSPKGRGSLPTYEITIHEGRNRQVRRMFKAVGFPLSTLKRL 221
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLK 160
R G L L G L +++++
Sbjct: 222 RFGPLELDPSLAPGAFRTLSKTEIQ 246
>gi|89895026|ref|YP_518513.1| hypothetical protein DSY2280 [Desulfitobacterium hafniense Y51]
gi|89334474|dbj|BAE84069.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 257
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P +PR R++ VGRLD T+GL+++TNDGD A + HPS ++K Y + + ++ L
Sbjct: 105 PKIPR-RVYPVGRLDYDTSGLLLLTNDGDLAHRLMHPSYGVEKTYRVEVGEKIPEQALKR 163
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G ++E P + + P+ P I +HEGRN +VR + K G L +LKRL
Sbjct: 164 LEKGVLLEDGKTAPARIREVSPKGRGSLPTYEITIHEGRNRQVRRMFKAVGFPLSTLKRL 223
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLK 160
R G L L G L +++++
Sbjct: 224 RFGPLELDPSLAPGAFRTLSKTEIQ 248
>gi|363894121|ref|ZP_09321211.1| hypothetical protein HMPREF9629_01537 [Eubacteriaceae bacterium
ACC19a]
gi|361962864|gb|EHL15962.1| hypothetical protein HMPREF9629_01537 [Eubacteriaceae bacterium
ACC19a]
Length = 232
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
++ VGRLD ++GLI+VTNDGD A ++HP S + K YIAT++G +++ + EG ++
Sbjct: 95 VYPVGRLDYDSSGLILVTNDGDIANKLTHPRSHISKTYIATLNGRLSENQMKQFREGILL 154
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G P + L D R+V++EGRN ++R ++ G ++ LKR+ IG ++
Sbjct: 155 DGKKTLPSEISLY----DFSENSYRVVLYEGRNRQIRNMISALGREVKELKRISIGKIKI 210
>gi|315641868|ref|ZP_07896860.1| ribosomal small subunit pseudouridine synthase A [Enterococcus
italicus DSM 15952]
gi|315482436|gb|EFU72976.1| ribosomal small subunit pseudouridine synthase A [Enterococcus
italicus DSM 15952]
Length = 272
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+++TNDG A + P ++KEY AT+ G + + SEG
Sbjct: 116 REDLFPVGRLDKDTEGLLVLTNDGQLAHRLLSPKKHVEKEYHATVAGVMTAEDVALFSEG 175
Query: 80 TVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+I +G C P + +L +I +++HEG+ H+V+ +V G ++ LKR+R+G
Sbjct: 176 LMIDQGEQCLPAKLTILSVDESAQTSQISLILHEGKFHQVKRMVAAVGKEVVYLKRIRMG 235
Query: 139 GFRLPSDLGIGMH 151
L L +G +
Sbjct: 236 QLTLDESLALGEY 248
>gi|423073622|ref|ZP_17062361.1| pseudouridine synthase B, ribosomal large subunit
[Desulfitobacterium hafniense DP7]
gi|361855463|gb|EHL07431.1| pseudouridine synthase B, ribosomal large subunit
[Desulfitobacterium hafniense DP7]
Length = 257
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P +PR R++ VGRLD T+GL+++TNDGD A + HPS ++K Y + + ++ L
Sbjct: 105 PKIPR-RVYPVGRLDYDTSGLLLLTNDGDLAHRLMHPSYGVEKTYRVEVGEKIPEQALKR 163
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G ++E P + + P+ P I +HEGRN +VR + K G L +LKRL
Sbjct: 164 LEKGVLLEDGKTAPARIREVSPKGRGSLPTYEITIHEGRNRQVRRMFKAVGFPLSTLKRL 223
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLK 160
R G L L G L +++++
Sbjct: 224 RFGPLELDPSLAPGAFRTLSKTEIQ 248
>gi|449896444|ref|ZP_21789717.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans R221]
gi|449262379|gb|EMC59832.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans R221]
Length = 240
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R +++ +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVKLTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|194397181|ref|YP_002037336.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae G54]
gi|418120768|ref|ZP_12757714.1| hypothetical protein SPAR80_0634 [Streptococcus pneumoniae GA44194]
gi|419490620|ref|ZP_14030360.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47179]
gi|194356848|gb|ACF55296.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae G54]
gi|353793595|gb|EHD73954.1| hypothetical protein SPAR80_0634 [Streptococcus pneumoniae GA44194]
gi|379594199|gb|EHZ59009.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47179]
Length = 241
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGIKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|171780251|ref|ZP_02921155.1| hypothetical protein STRINF_02039 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281599|gb|EDT47034.1| pseudouridylate synthase [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 241
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G V
Sbjct: 93 RIYPVGRLDWDTTGLLILTNDGDFTDEMIHPRNEIDKVYLARVKGLATKENLRPLTRGVV 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++ P+ R + + +HEGRNH+V+++ + GL + L R G
Sbjct: 153 IDGKKTKPARYNIIKVDPEKNRSVVELTIHEGRNHQVKKMFELVGLLVDKLSRTNFGTLD 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|342163371|ref|YP_004768010.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pseudopneumoniae IS7493]
gi|341933253|gb|AEL10150.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pseudopneumoniae IS7493]
Length = 241
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQVFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + R I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPARLEILSASPSLSRASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G ++ L Q +L+++
Sbjct: 212 TLNPDLAEGNYLPLNQKELQII 233
>gi|450176471|ref|ZP_21885818.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SM1]
gi|449245135|gb|EMC43482.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SM1]
Length = 240
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRNEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|383938500|ref|ZP_09991709.1| pseudouridylate synthase [Streptococcus pseudopneumoniae SK674]
gi|418973980|ref|ZP_13521919.1| pseudouridylate synthase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383346199|gb|EID24264.1| pseudouridylate synthase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383714560|gb|EID70557.1| pseudouridylate synthase [Streptococcus pseudopneumoniae SK674]
Length = 241
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQVFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + R I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPARLEILSASPSLSRASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G ++ L Q +L+++
Sbjct: 212 TLNPDLAEGNYLPLNQKELQII 233
>gi|313890897|ref|ZP_07824521.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pseudoporcinus SPIN 20026]
gi|416851848|ref|ZP_11908993.1| pseudouridylate synthase [Streptococcus pseudoporcinus LQ 940-04]
gi|313120795|gb|EFR43910.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739337|gb|EHI64569.1| pseudouridylate synthase [Streptococcus pseudoporcinus LQ 940-04]
Length = 240
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGR+H+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRHHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|365832639|ref|ZP_09374169.1| pseudouridine synthase [Coprobacillus sp. 3_3_56FAA]
gi|374625620|ref|ZP_09698036.1| pseudouridine synthase [Coprobacillus sp. 8_2_54BFAA]
gi|365260157|gb|EHM90124.1| pseudouridine synthase [Coprobacillus sp. 3_3_56FAA]
gi|373915280|gb|EHQ47051.1| pseudouridine synthase [Coprobacillus sp. 8_2_54BFAA]
Length = 239
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G LF VGRLD+ T GL+++TNDGDF+ + PS K Y A I G ++++ + A
Sbjct: 91 GYENYDLFPVGRLDLDTEGLLLITNDGDFSHKLLAPSRNHSKIYFANIAGVMDEQDIQAF 150
Query: 77 SEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+G ++ G HC P +E++ D +RI + EG+ H+V+++V+ G ++ LKRL
Sbjct: 151 KDGIILNTGYHCKPANLEIINKNND--SCDVRIEIFEGKFHQVKKMVEVCGKEVIYLKRL 208
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
I L L +G EL +L
Sbjct: 209 SIRNLELDRSLALGDFRELSNEEL 232
>gi|419481704|ref|ZP_14021498.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40563]
gi|421235851|ref|ZP_15692452.1| hypothetical protein AMCSP07_000654 [Streptococcus pneumoniae
2071004]
gi|379581383|gb|EHZ46268.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40563]
gi|395604770|gb|EJG64902.1| hypothetical protein AMCSP07_000654 [Streptococcus pneumoniae
2071004]
Length = 241
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|417698116|ref|ZP_12347289.1| hypothetical protein SPAR69_0668 [Streptococcus pneumoniae GA41317]
gi|419452849|ref|ZP_13992823.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP03]
gi|419505635|ref|ZP_14045296.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA49194]
gi|332202557|gb|EGJ16626.1| hypothetical protein SPAR69_0668 [Streptococcus pneumoniae GA41317]
gi|379607549|gb|EHZ72295.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA49194]
gi|379627433|gb|EHZ92045.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP03]
Length = 241
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|168482908|ref|ZP_02707860.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC1873-00]
gi|417695841|ref|ZP_12345021.1| hypothetical protein SPAR93_0709 [Streptococcus pneumoniae GA47368]
gi|418091298|ref|ZP_12728443.1| hypothetical protein SPAR84_0667 [Streptococcus pneumoniae GA44452]
gi|418107057|ref|ZP_12744097.1| hypothetical protein SPAR70_0596 [Streptococcus pneumoniae GA41410]
gi|418109642|ref|ZP_12746671.1| hypothetical protein SPAR113_0715 [Streptococcus pneumoniae
GA49447]
gi|418161716|ref|ZP_12798407.1| hypothetical protein SPAR49_0707 [Streptococcus pneumoniae GA17328]
gi|418168775|ref|ZP_12805421.1| hypothetical protein SPAR56_0866 [Streptococcus pneumoniae GA19077]
gi|418175484|ref|ZP_12812082.1| hypothetical protein SPAR71_0718 [Streptococcus pneumoniae GA41437]
gi|418218418|ref|ZP_12845086.1| hypothetical protein SPAR145_0698 [Streptococcus pneumoniae NP127]
gi|418220606|ref|ZP_12847262.1| hypothetical protein SPAR104_0529 [Streptococcus pneumoniae
GA47751]
gi|418238254|ref|ZP_12864810.1| hypothetical protein SPAR146_0706 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419421999|ref|ZP_13962218.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA43264]
gi|419459529|ref|ZP_13999465.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02270]
gi|419461809|ref|ZP_14001725.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02714]
gi|419488344|ref|ZP_14028097.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA44386]
gi|421272326|ref|ZP_15723173.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR55]
gi|172043870|gb|EDT51916.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC1873-00]
gi|332203838|gb|EGJ17905.1| hypothetical protein SPAR93_0709 [Streptococcus pneumoniae GA47368]
gi|353766671|gb|EHD47211.1| hypothetical protein SPAR84_0667 [Streptococcus pneumoniae GA44452]
gi|353780534|gb|EHD60991.1| hypothetical protein SPAR70_0596 [Streptococcus pneumoniae GA41410]
gi|353784935|gb|EHD65355.1| hypothetical protein SPAR113_0715 [Streptococcus pneumoniae
GA49447]
gi|353831306|gb|EHE11435.1| hypothetical protein SPAR49_0707 [Streptococcus pneumoniae GA17328]
gi|353836694|gb|EHE16782.1| hypothetical protein SPAR56_0866 [Streptococcus pneumoniae GA19077]
gi|353844044|gb|EHE24088.1| hypothetical protein SPAR71_0718 [Streptococcus pneumoniae GA41437]
gi|353876615|gb|EHE56464.1| hypothetical protein SPAR145_0698 [Streptococcus pneumoniae NP127]
gi|353877475|gb|EHE57318.1| hypothetical protein SPAR104_0529 [Streptococcus pneumoniae
GA47751]
gi|353894677|gb|EHE74418.1| hypothetical protein SPAR146_0706 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379534401|gb|EHY99613.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02270]
gi|379534700|gb|EHY99910.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02714]
gi|379589330|gb|EHZ54169.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA43264]
gi|379590459|gb|EHZ55297.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA44386]
gi|395877885|gb|EJG88954.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR55]
Length = 241
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|149010697|ref|ZP_01832068.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP19-BS75]
gi|410476139|ref|YP_006742898.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae gamPNI0373]
gi|418075796|ref|ZP_12713036.1| hypothetical protein SPAR98_0716 [Streptococcus pneumoniae GA47502]
gi|418166302|ref|ZP_12802958.1| hypothetical protein SPAR52_0720 [Streptococcus pneumoniae GA17971]
gi|418188911|ref|ZP_12825426.1| hypothetical protein SPAR94_0665 [Streptococcus pneumoniae GA47373]
gi|419468556|ref|ZP_14008427.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA06083]
gi|444388092|ref|ZP_21186084.1| pseudouridylate synthase [Streptococcus pneumoniae PCS125219]
gi|444390185|ref|ZP_21188100.1| pseudouridylate synthase [Streptococcus pneumoniae PCS70012]
gi|444394182|ref|ZP_21191735.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0002]
gi|444397133|ref|ZP_21194620.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0006]
gi|444399642|ref|ZP_21197081.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0007]
gi|444403754|ref|ZP_21200808.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0008]
gi|444404877|ref|ZP_21201814.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0009]
gi|444408806|ref|ZP_21205436.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0010]
gi|444418029|ref|ZP_21214023.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0360]
gi|444419129|ref|ZP_21215011.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0427]
gi|147765178|gb|EDK72107.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP19-BS75]
gi|353750371|gb|EHD31011.1| hypothetical protein SPAR98_0716 [Streptococcus pneumoniae GA47502]
gi|353829898|gb|EHE10028.1| hypothetical protein SPAR52_0720 [Streptococcus pneumoniae GA17971]
gi|353856053|gb|EHE36022.1| hypothetical protein SPAR94_0665 [Streptococcus pneumoniae GA47373]
gi|379546659|gb|EHZ11797.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA06083]
gi|406369084|gb|AFS42774.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae gamPNI0373]
gi|444250638|gb|ELU57116.1| pseudouridylate synthase [Streptococcus pneumoniae PCS125219]
gi|444256648|gb|ELU62986.1| pseudouridylate synthase [Streptococcus pneumoniae PCS70012]
gi|444261249|gb|ELU67553.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0002]
gi|444262364|gb|ELU68662.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0006]
gi|444263364|gb|ELU69544.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0008]
gi|444268406|gb|ELU74265.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0007]
gi|444269100|gb|ELU74915.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0010]
gi|444276000|gb|ELU81591.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0009]
gi|444282155|gb|ELU87435.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0360]
gi|444287440|gb|ELU92367.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0427]
Length = 241
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|25011682|ref|NP_736077.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae NEM316]
gi|24413222|emb|CAD47301.1| Unknown [Streptococcus agalactiae NEM316]
Length = 240
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A I G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARIKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R + G
Sbjct: 151 VVIDGKKTKPARYNIIKVDHEKNRSVVELTIHEGRNHQVKKMFEQVGLLVDKLSRTQFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|167756918|ref|ZP_02429045.1| hypothetical protein CLORAM_02467 [Clostridium ramosum DSM 1402]
gi|167703093|gb|EDS17672.1| pseudouridylate synthase [Clostridium ramosum DSM 1402]
Length = 239
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G LF VGRLD+ T GL+++TNDGDF+ + PS K Y A I G ++++ + A
Sbjct: 91 GYENYDLFPVGRLDLDTEGLLLITNDGDFSHKLLAPSRNHSKIYFANIAGVMDEQDIQAF 150
Query: 77 SEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+G ++ G HC P +E++ D +RI + EG+ H+V+++V+ G ++ LKRL
Sbjct: 151 KDGIILNTGYHCKPANLEIINKNND--SCDVRIEIFEGKFHQVKKMVEVCGKEVIYLKRL 208
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
I L L +G EL +L
Sbjct: 209 SIRNLELDRSLSLGDFRELSNEEL 232
>gi|134299005|ref|YP_001112501.1| pseudouridine synthase [Desulfotomaculum reducens MI-1]
gi|134051705|gb|ABO49676.1| ribosomal large subunit pseudouridine synthase B [Desulfotomaculum
reducens MI-1]
Length = 309
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD + GL+++TNDG+ QA++HP K++K Y+A +DG L A+++G V
Sbjct: 97 RVYPVGRLDYDSEGLLLLTNDGELTQALTHPKHKVKKTYLAKVDGIPETEELKAMAKGLV 156
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V L + R + I +HEGRN +VR + ++ G K+ L+R RIG
Sbjct: 157 LEDGPTAPADVRLAGTGDN--RALLEISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLE 214
Query: 142 LPS 144
L S
Sbjct: 215 LGS 217
>gi|406669507|ref|ZP_11076777.1| pseudouridine synthase [Facklamia ignava CCUG 37419]
gi|405583203|gb|EKB57171.1| pseudouridine synthase [Facklamia ignava CCUG 37419]
Length = 246
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 1/133 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD TTGLI++TNDG+FA + HP ++ KEY A ++G + L + G
Sbjct: 94 RIYPIGRLDYDTTGLILLTNDGEFANLMMHPKYEISKEYEALVEGIIENDQLNLLRRGVD 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G +P LL +P R+R+ +HEG NH+V+ + + G + LKR++I
Sbjct: 154 LDGVKTSPAKARLLNKKPRQQTSRVRLEIHEGWNHQVKRMFEVVGHPVQRLKRVKISFLE 213
Query: 142 LPSDLGIGMHVEL 154
L L GM EL
Sbjct: 214 L-GKLEPGMWREL 225
>gi|336064856|ref|YP_004559715.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pasteurianus ATCC 43144]
gi|334283056|dbj|BAK30629.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
pasteurianus ATCC 43144]
Length = 241
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 93 RIYPVGRLDWDTTGLLILTNDGDFTDEMIHPRNEIDKVYLARVKGIATKENLRPLTRGVE 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++ P+ R + + +HEGRNH+V+++ ++ GL + L R + G
Sbjct: 153 IDGKKTKPARYNIVKVDPEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTQFGTLD 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|322388325|ref|ZP_08061929.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
infantis ATCC 700779]
gi|419842376|ref|ZP_14365724.1| pseudouridylate synthase [Streptococcus infantis ATCC 700779]
gi|321140997|gb|EFX36498.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
infantis ATCC 700779]
gi|385703853|gb|EIG40955.1| pseudouridylate synthase [Streptococcus infantis ATCC 700779]
Length = 241
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L +++ +GRLD TTGL+++TN+G + HP + K Y ++G + H+
Sbjct: 90 LQSDQVYAIGRLDRDTTGLLLLTNNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQQFK 149
Query: 78 EGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
G V ++GT C P +E+L P I R I I EG+ H+V+++ + G+K+ +LKR++
Sbjct: 150 NGIVFLDGTICKPAQLEILSSSPSISRATITI--SEGKFHQVKKMFLSVGVKVTALKRVQ 207
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G F L DL G + L Q +LK++
Sbjct: 208 FGDFLLDPDLAEGQYRLLNQEELKII 233
>gi|228477053|ref|ZP_04061691.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus salivarius SK126]
gi|228251072|gb|EEK10243.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus salivarius SK126]
Length = 243
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 82/141 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A +DG +N+ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVDGIMNQEDILAFEKGIE 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ ++I + EG+ H+V+ +V G ++ L+RL +G
Sbjct: 155 LKDYTCQPAKLEIISVDRATGTSLVQITIAEGKFHQVKRMVAACGKEVTELQRLSMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
LP+DL +G L + +L+ +
Sbjct: 215 LPNDLEVGAWRRLTEEELEAL 235
>gi|116628203|ref|YP_820822.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
thermophilus LMD-9]
gi|116101480|gb|ABJ66626.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
thermophilus LMD-9]
Length = 243
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 81/138 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A + G +++ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVAGIMDEEDILAFEKGIK 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ + ++I V EG+ H+V+ +V G K+ L+RL++G
Sbjct: 155 LKDHTCQPAKLEIVSVDRNASTSLVQITVAEGKFHQVKRMVAACGKKVADLQRLKMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDL 159
LP+DL +G L Q +L
Sbjct: 215 LPNDLELGAWRRLTQEEL 232
>gi|399912114|ref|ZP_10780428.1| RNA-binding S4 domain-containing protein [Halomonas sp. KM-1]
Length = 288
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R +GRLD+ T+GL++ T DG+ A + HPS+++++EY + G V K H
Sbjct: 94 ERLPRLKGERWIAIGRLDINTSGLLLFTTDGELANRLMHPSTQVEREYAVRVMGEVRKEH 153
Query: 73 LIAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
++A+ EG ++E G DV E + +V+ EGRN EVR L ++ GL +
Sbjct: 154 VVAMVEGVMLEDGPARFTDVQEFGGEGINTW---FHVVITEGRNREVRRLWESQGLTVSR 210
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDL 159
LKR+R G L G VEL Q ++
Sbjct: 211 LKRVRYGNIFLDKRAKAGEWVELSQDEI 238
>gi|317057433|ref|YP_004105900.1| pseudouridine synthase [Ruminococcus albus 7]
gi|315449702|gb|ADU23266.1| pseudouridine synthase [Ruminococcus albus 7]
Length = 244
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
GLP R++ VGRLD + GL+++TNDG FA + HPS + K Y T+ +N L+ +
Sbjct: 95 GLPE-RVYPVGRLDKNSEGLLLLTNDGAFANDIMHPSKHVNKTYRVTVRPDINDEQLVKL 153
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+ G I+G + V +L QP R +++ +HEGRN ++R++ + GL++ LKR
Sbjct: 154 ASGVEIDGRMTSECSVTVLDKQPG--RVVLQMTIHEGRNRQIRKMCEAVGLEVARLKRTA 211
Query: 137 IGGFRLPSDLGIGMHVELKQSDLK 160
IG RL L G + ELK +L+
Sbjct: 212 IGPLRL-GMLKPGEYRELKPDELR 234
>gi|146296765|ref|YP_001180536.1| pseudouridine synthase [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410341|gb|ABP67345.1| pseudouridine synthase [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 237
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGLI++TNDG+FA V+HP ++K YIA I+G K + +G
Sbjct: 97 RVFPVGRLDFDTTGLILLTNDGEFAYKVTHPKHDIEKTYIALIEGVPTKEEIEQFKKGLF 156
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G +P +L + I+I HEGRN +VR++ G ++ LKR+ IG +
Sbjct: 157 IDGKLTSPAKFRILKVFKGMSLVEIKI--HEGRNRQVRKMCDAIGHRVLKLKRVAIGKLK 214
Query: 142 L 142
L
Sbjct: 215 L 215
>gi|357638829|ref|ZP_09136702.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
urinalis 2285-97]
gi|418417232|ref|ZP_12990429.1| pseudouridine synthase [Streptococcus urinalis FB127-CNA-2]
gi|357587283|gb|EHJ56691.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
urinalis 2285-97]
gi|410872596|gb|EKS20539.1| pseudouridine synthase [Streptococcus urinalis FB127-CNA-2]
Length = 240
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P +L + R + + +HEGRNH+V+++ ++ GL + L R + G
Sbjct: 151 LVIDGKKTKPARYNILKVDTEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTQFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LNL 213
>gi|419706871|ref|ZP_14234378.1| Pseudouridine synthase [Streptococcus salivarius PS4]
gi|383283299|gb|EIC81256.1| Pseudouridine synthase [Streptococcus salivarius PS4]
Length = 241
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKGNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVIDGKKTKPARYNIIRVDHEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|291544370|emb|CBL17479.1| ribosomal large subunit pseudouridine synthase B [Ruminococcus
champanellensis 18P13]
Length = 242
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD + GL+++TNDGDFA ++ HPS + K Y T+ + + L+ +SEG
Sbjct: 98 RVYPVGRLDRNSEGLLLLTNDGDFANSIMHPSRHVSKTYRVTVRPDITDQQLVQLSEGVE 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V +L +P R + I + EGRN ++R + + GL++ L+R+ IG +
Sbjct: 158 IDGKPTLPATVNVLTKEPG--RVVLLITIREGRNRQIRRMCEAVGLEVARLRRISIGPLK 215
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G + EL +L+ +
Sbjct: 216 L-GMLKPGTYRELTAEELRAL 235
>gi|290579936|ref|YP_003484328.1| pseudouridylate synthase B large subunit [Streptococcus mutans
NN2025]
gi|449881229|ref|ZP_21784329.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SA38]
gi|449908719|ref|ZP_21793916.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans OMZ175]
gi|449929639|ref|ZP_21801698.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 3SN1]
gi|449970255|ref|ZP_21813715.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 2VS1]
gi|449973920|ref|ZP_21814997.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 11VS1]
gi|449990447|ref|ZP_21821546.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NVAB]
gi|449999295|ref|ZP_21824435.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans N29]
gi|450028989|ref|ZP_21832499.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans G123]
gi|450035617|ref|ZP_21835084.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans M21]
gi|450046891|ref|ZP_21839191.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans N34]
gi|450058779|ref|ZP_21843194.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML4]
gi|450062758|ref|ZP_21844535.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML5]
gi|450066663|ref|ZP_21846100.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML9]
gi|450087386|ref|ZP_21854235.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NV1996]
gi|450092421|ref|ZP_21855987.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans W6]
gi|450100944|ref|ZP_21858946.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SF1]
gi|450110041|ref|ZP_21861867.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SM6]
gi|450124961|ref|ZP_21867356.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans U2A]
gi|450147618|ref|ZP_21875168.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 14D]
gi|450160062|ref|ZP_21879789.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 66-2A]
gi|450165272|ref|ZP_21881777.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans B]
gi|450169417|ref|ZP_21882980.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SM4]
gi|450180870|ref|ZP_21887479.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 24]
gi|254996835|dbj|BAH87436.1| putative pseudouridylate synthase B large subunit [Streptococcus
mutans NN2025]
gi|449164344|gb|EMB67410.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 3SN1]
gi|449173528|gb|EMB76094.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 2VS1]
gi|449179014|gb|EMB81247.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 11VS1]
gi|449181721|gb|EMB83790.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NVAB]
gi|449187031|gb|EMB88832.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans N29]
gi|449194953|gb|EMB96291.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans G123]
gi|449195224|gb|EMB96555.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans M21]
gi|449198247|gb|EMB99371.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans N34]
gi|449203750|gb|EMC04599.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML4]
gi|449205490|gb|EMC06237.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML5]
gi|449208688|gb|EMC09265.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML9]
gi|449218054|gb|EMC18077.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NV1996]
gi|449218348|gb|EMC18362.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans W6]
gi|449220210|gb|EMC20110.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SF1]
gi|449225582|gb|EMC25173.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SM6]
gi|449233140|gb|EMC32224.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans U2A]
gi|449236692|gb|EMC35598.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 14D]
gi|449240558|gb|EMC39229.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 66-2A]
gi|449240801|gb|EMC39458.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans B]
gi|449247311|gb|EMC45595.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SM4]
gi|449247718|gb|EMC45989.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 24]
gi|449251654|gb|EMC49660.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SA38]
gi|449262627|gb|EMC60074.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans OMZ175]
Length = 240
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|450012701|ref|ZP_21829743.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans A19]
gi|450024238|ref|ZP_21831119.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans U138]
gi|449188141|gb|EMB89871.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans A19]
gi|449192216|gb|EMB93646.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans U138]
Length = 240
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|449981025|ref|ZP_21817565.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 5SM3]
gi|449176213|gb|EMB78572.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 5SM3]
Length = 240
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|352516285|ref|YP_004885602.1| pseudouridine synthase RsuA [Tetragenococcus halophilus NBRC 12172]
gi|348600392|dbj|BAK93438.1| pseudouridine synthase RsuA [Tetragenococcus halophilus NBRC 12172]
Length = 239
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+++TNDG + + P ++KEYIA + G + R + + G
Sbjct: 93 RSDLFPVGRLDKDTKGLLVITNDGALSHRLLSPKKHVEKEYIAEVKGVMTTRDIERFAAG 152
Query: 80 TVIEGTH-CTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+G C P + + + IR+V++EG+ H+V+ +V G ++ LKR+R+G
Sbjct: 153 LKIDGDELCLPAELTIEQVDEENEESTIRLVLYEGKYHQVKLMVHAVGKEVTHLKRIRMG 212
Query: 139 GFRLPSDLGIGMHVELKQSDLKLMGWK 165
L L G + EL + ++KL+ K
Sbjct: 213 ALYLDDQLEAGDYRELTEEEIKLLENK 239
>gi|24380085|ref|NP_722040.1| pseudouridylate synthase [Streptococcus mutans UA159]
gi|387785606|ref|YP_006250702.1| putative pseudouridylate synthase B large subunit [Streptococcus
mutans LJ23]
gi|397650305|ref|YP_006490832.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans GS-5]
gi|449864931|ref|ZP_21778707.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans U2B]
gi|449872794|ref|ZP_21781610.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 8ID3]
gi|449875015|ref|ZP_21781978.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans S1B]
gi|449893453|ref|ZP_21788745.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SF12]
gi|449904797|ref|ZP_21792859.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans M230]
gi|449925306|ref|ZP_21800195.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 4SM1]
gi|449935208|ref|ZP_21803238.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 2ST1]
gi|449984242|ref|ZP_21818928.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NFSM2]
gi|449995724|ref|ZP_21823147.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans A9]
gi|450076918|ref|ZP_21850092.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans N3209]
gi|450083012|ref|ZP_21852673.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans N66]
gi|450115056|ref|ZP_21863715.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans ST1]
gi|450120735|ref|ZP_21865878.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans ST6]
gi|450132543|ref|ZP_21870119.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML8]
gi|450155154|ref|ZP_21878102.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 21]
gi|24378080|gb|AAN59346.1|AE015000_4 putative pseudouridylate synthase B, large subunit [Streptococcus
mutans UA159]
gi|379132007|dbj|BAL68759.1| putative pseudouridylate synthase B large subunit [Streptococcus
mutans LJ23]
gi|392603874|gb|AFM82038.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans GS-5]
gi|449153012|gb|EMB56705.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML8]
gi|449154286|gb|EMB57884.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 8ID3]
gi|449161709|gb|EMB64887.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 4SM1]
gi|449166847|gb|EMB69767.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 2ST1]
gi|449180493|gb|EMB82650.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NFSM2]
gi|449184220|gb|EMB86175.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans A9]
gi|449211928|gb|EMC12314.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans N3209]
gi|449213998|gb|EMC14316.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans N66]
gi|449228525|gb|EMC27890.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans ST1]
gi|449229930|gb|EMC29217.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans ST6]
gi|449237394|gb|EMC36247.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 21]
gi|449254393|gb|EMC52302.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans S1B]
gi|449255884|gb|EMC53724.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SF12]
gi|449258971|gb|EMC56523.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans M230]
gi|449264563|gb|EMC61901.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans U2B]
Length = 240
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|77414368|ref|ZP_00790523.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae 515]
gi|77159558|gb|EAO70714.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae 515]
Length = 240
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R + G
Sbjct: 151 VVIDGKKTKPARYNIIKVDHEKNRSVVELTIHEGRNHQVKKMFEQVGLLVDKLSRTQFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|450071399|ref|ZP_21848133.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans M2A]
gi|449212419|gb|EMC12787.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans M2A]
Length = 240
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|410594974|ref|YP_006951701.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae SA20-06]
gi|421532187|ref|ZP_15978555.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae STIR-CD-17]
gi|403642601|gb|EJZ03432.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae STIR-CD-17]
gi|410518613|gb|AFV72757.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae SA20-06]
Length = 240
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R + G
Sbjct: 151 VVIDGKKTKPARYNIIKVDHEKNRSVVELTIHEGRNHQVKKMFEQVGLLVDKLSRTQFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|449886317|ref|ZP_21786141.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SA41]
gi|449941775|ref|ZP_21805643.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 11A1]
gi|450039117|ref|ZP_21836086.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans T4]
gi|449151789|gb|EMB55513.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 11A1]
gi|449200773|gb|EMC01794.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans T4]
gi|449254496|gb|EMC52404.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SA41]
Length = 240
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|307708437|ref|ZP_07644903.1| RNA pseudouridine synthase family protein [Streptococcus mitis NCTC
12261]
gi|307615536|gb|EFN94743.1| RNA pseudouridine synthase family protein [Streptococcus mitis NCTC
12261]
Length = 241
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A
Sbjct: 88 PDIQSDMLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQA 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +E+L P + + I I EG+ H+V+++ + G+K+ SLKR
Sbjct: 148 FQKGIVFLDGTVCKPARLEILSASPSLSQASITI--SEGKFHQVKKMFLSVGVKVTSLKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L +L G + L Q +LK++
Sbjct: 206 IQFGEFTLDPELAEGQYRPLNQEELKII 233
>gi|254786469|ref|YP_003073898.1| ribosomal large subunit pseudouridine synthase B [Teredinibacter
turnerae T7901]
gi|237684905|gb|ACR12169.1| ribosomal large subunit pseudouridine synthase B [Teredinibacter
turnerae T7901]
Length = 285
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + + R +VGRLD T+GL++ TNDG+ A + HPS+ + +EY+ I G V+ L
Sbjct: 102 PKIAQSRWISVGRLDFNTSGLLLFTNDGELANKLMHPSTGIDREYLVRIQGEVDNDMLQR 161
Query: 76 ISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ +G ++E G D+VE Q + VV EGRN EVR L ++ +++ LKR
Sbjct: 162 LRDGVLLEDGIARFTDIVE---GQKESKNRWFYCVVMEGRNREVRRLWESQEVRVSRLKR 218
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDL 159
+R G +PS + G VEL + D+
Sbjct: 219 VRYGNIFIPSHVRAGQWVELTEKDV 243
>gi|450007217|ref|ZP_21827652.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NMT4863]
gi|450049735|ref|ZP_21839856.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NFSM1]
gi|449186672|gb|EMB88492.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NMT4863]
gi|449203486|gb|EMC04345.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NFSM1]
Length = 240
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|449921097|ref|ZP_21798826.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 1SM1]
gi|449157651|gb|EMB61088.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 1SM1]
Length = 240
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|449947477|ref|ZP_21807422.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 11SSST2]
gi|449168662|gb|EMB71470.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 11SSST2]
Length = 240
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|449956334|ref|ZP_21809430.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 4VF1]
gi|449964232|ref|ZP_21811178.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 15VF2]
gi|450106814|ref|ZP_21860704.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SF14]
gi|450138165|ref|ZP_21872027.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML1]
gi|449170616|gb|EMB73312.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 4VF1]
gi|449172749|gb|EMB75361.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 15VF2]
gi|449222867|gb|EMC22580.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans SF14]
gi|449234311|gb|EMC33328.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans NLML1]
Length = 240
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|449914681|ref|ZP_21795749.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 15JP3]
gi|449157784|gb|EMB61219.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 15JP3]
Length = 240
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L +++G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLTKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|375088351|ref|ZP_09734691.1| pseudouridine synthase [Dolosigranulum pigrum ATCC 51524]
gi|374562389|gb|EHR33719.1| pseudouridine synthase [Dolosigranulum pigrum ATCC 51524]
Length = 239
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTG +++TNDG+ A + HP + +K Y+A ++G V + L + G
Sbjct: 92 KERIYPVGRLDYDTTGALLLTNDGELANKLMHPRYEFEKTYVAKVNGRVTEEALQQLKTG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+IEG P V+LL +++V+HEGRNH+V+ +++ G + L R + G
Sbjct: 152 VIIEGKETAPARVKLLSYDKKTDHSIVKLVIHEGRNHQVKLMMQAVGHPVKELTREKY-G 210
Query: 140 FRLPSDLGIGMHVELKQSDL 159
F + L +G LK ++
Sbjct: 211 FLETTGLSLGQWRHLKDKEV 230
>gi|417686137|ref|ZP_12335415.1| hypothetical protein SPAR68_0695 [Streptococcus pneumoniae GA41301]
gi|418159330|ref|ZP_12796033.1| hypothetical protein SPAR43_0663 [Streptococcus pneumoniae GA17227]
gi|419520633|ref|ZP_14060230.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05245]
gi|421238329|ref|ZP_15694898.1| hypothetical protein AMCSP15_000892 [Streptococcus pneumoniae
2071247]
gi|421244522|ref|ZP_15701025.1| hypothetical protein AMCSP10_000483 [Streptococcus pneumoniae
2081685]
gi|332075974|gb|EGI86440.1| hypothetical protein SPAR68_0695 [Streptococcus pneumoniae GA41301]
gi|353825199|gb|EHE05365.1| hypothetical protein SPAR43_0663 [Streptococcus pneumoniae GA17227]
gi|379540536|gb|EHZ05708.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05245]
gi|395602916|gb|EJG63057.1| hypothetical protein AMCSP15_000892 [Streptococcus pneumoniae
2071247]
gi|395610180|gb|EJG70259.1| hypothetical protein AMCSP10_000483 [Streptococcus pneumoniae
2081685]
Length = 241
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVQVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|16126081|ref|NP_420645.1| ribosomal small subunit pseudouridine synthase A [Caulobacter
crescentus CB15]
gi|13423277|gb|AAK23813.1| ribosomal small subunit pseudouridine synthase A [Caulobacter
crescentus CB15]
Length = 241
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
++D + W R+PGL TVGRLD T+GLI++T+DGDF V P + K Y+A
Sbjct: 86 IYDLLPRRWRLRDPGLS-----TVGRLDKDTSGLILITDDGDFLHRVISPKRHVPKTYLA 140
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPR-IRIVVHEGRNHEVREL 121
T+D +N + GT++ + P LLP + D+ R+ + EGR H+VR +
Sbjct: 141 TLDRPLNGSEGEVFAAGTLMLDSEEKP----LLPARLDVVNAHAARLTITEGRYHQVRRM 196
Query: 122 VKNAGLKLYSLKRLRIGGFRLPSDLGIGMH 151
G + +L R RIGG LP DL G H
Sbjct: 197 FAAVGNHVVALHRERIGGIALPDDLAAGQH 226
>gi|386345188|ref|YP_006041352.1| hypothetical protein STH8232_1731 [Streptococcus thermophilus JIM
8232]
gi|339278649|emb|CCC20397.1| hypothetical protein STH8232_1731 [Streptococcus thermophilus JIM
8232]
Length = 243
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 81/138 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A + G +++ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVAGIMDEEDILAFEKGIK 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ + ++I + EG+ H+V+ +V G K+ L+RL++G
Sbjct: 155 LKDHTCQPAKLEIVSVDRNASTSLVQITIAEGKFHQVKRMVAACGKKVADLQRLKMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDL 159
LP+DL +G L Q +L
Sbjct: 215 LPNDLELGAWRRLTQEEL 232
>gi|418182287|ref|ZP_12818848.1| hypothetical protein SPAR78_0689 [Streptococcus pneumoniae GA43380]
gi|419442174|ref|ZP_13982205.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13224]
gi|419531925|ref|ZP_14071444.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47794]
gi|421274601|ref|ZP_15725433.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA52612]
gi|353850524|gb|EHE30528.1| hypothetical protein SPAR78_0689 [Streptococcus pneumoniae GA43380]
gi|379554141|gb|EHZ19221.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13224]
gi|379609062|gb|EHZ73804.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47794]
gi|395875329|gb|EJG86410.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA52612]
Length = 241
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|421226860|ref|ZP_15683574.1| hypothetical protein AMCSP08_000677 [Streptococcus pneumoniae
2072047]
gi|395597930|gb|EJG58136.1| hypothetical protein AMCSP08_000677 [Streptococcus pneumoniae
2072047]
Length = 241
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|148994427|ref|ZP_01823650.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP9-BS68]
gi|168488362|ref|ZP_02712561.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae SP195]
gi|182683607|ref|YP_001835354.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae CGSP14]
gi|303254738|ref|ZP_07340839.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae BS455]
gi|303259951|ref|ZP_07345925.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP-BS293]
gi|303261357|ref|ZP_07347305.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP14-BS292]
gi|303264023|ref|ZP_07349944.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae BS397]
gi|303266337|ref|ZP_07352227.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae BS457]
gi|303268804|ref|ZP_07354592.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae BS458]
gi|387758954|ref|YP_006065932.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae INV200]
gi|417678641|ref|ZP_12328039.1| hypothetical protein SPAR50_0667 [Streptococcus pneumoniae GA17570]
gi|418125297|ref|ZP_12762213.1| hypothetical protein SPAR86_0665 [Streptococcus pneumoniae GA44511]
gi|418138999|ref|ZP_12775830.1| hypothetical protein SPAR28_0632 [Streptococcus pneumoniae GA13338]
gi|418180040|ref|ZP_12816613.1| hypothetical protein SPAR74_0645 [Streptococcus pneumoniae GA41688]
gi|418191122|ref|ZP_12827627.1| hypothetical protein SPAR96_0646 [Streptococcus pneumoniae GA47388]
gi|418199715|ref|ZP_12836162.1| hypothetical protein SPAR109_0629 [Streptococcus pneumoniae
GA47976]
gi|418213860|ref|ZP_12840595.1| hypothetical protein SPAR118_0652 [Streptococcus pneumoniae
GA54644]
gi|418233884|ref|ZP_12860464.1| hypothetical protein SPAR17_0658 [Streptococcus pneumoniae GA08780]
gi|419484442|ref|ZP_14024218.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA43257]
gi|419494979|ref|ZP_14034699.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47461]
gi|419507759|ref|ZP_14047413.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA49542]
gi|419514243|ref|ZP_14053871.1| pseudouridine synthase family protein [Streptococcus pneumoniae
England14-9]
gi|419522871|ref|ZP_14062453.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13723]
gi|421206128|ref|ZP_15663192.1| hypothetical protein AMCSP20_000692 [Streptococcus pneumoniae
2090008]
gi|421219878|ref|ZP_15676733.1| hypothetical protein AMCSP05_000613 [Streptococcus pneumoniae
2070425]
gi|421222209|ref|ZP_15679003.1| hypothetical protein AMCSP14_000631 [Streptococcus pneumoniae
2070531]
gi|421229334|ref|ZP_15686011.1| hypothetical protein AMCSP01_000705 [Streptococcus pneumoniae
2061376]
gi|421278458|ref|ZP_15729268.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17301]
gi|421291488|ref|ZP_15742228.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|421293877|ref|ZP_15744601.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|421297291|ref|ZP_15747994.1| pseudouridine synthase [Streptococcus pneumoniae GA58581]
gi|421300544|ref|ZP_15751215.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
gi|421302495|ref|ZP_15753160.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|421311432|ref|ZP_15762039.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
gi|147927263|gb|EDK78297.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP9-BS68]
gi|182628941|gb|ACB89889.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae CGSP14]
gi|183573107|gb|EDT93635.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae SP195]
gi|301801543|emb|CBW34235.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae INV200]
gi|302598278|gb|EFL65323.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae BS455]
gi|302637491|gb|EFL67978.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP14-BS292]
gi|302638870|gb|EFL69331.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP-BS293]
gi|302641669|gb|EFL72028.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae BS458]
gi|302644148|gb|EFL74405.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae BS457]
gi|302646428|gb|EFL76654.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae BS397]
gi|332074486|gb|EGI84962.1| hypothetical protein SPAR50_0667 [Streptococcus pneumoniae GA17570]
gi|353799341|gb|EHD79660.1| hypothetical protein SPAR86_0665 [Streptococcus pneumoniae GA44511]
gi|353846368|gb|EHE26401.1| hypothetical protein SPAR74_0645 [Streptococcus pneumoniae GA41688]
gi|353858721|gb|EHE38681.1| hypothetical protein SPAR96_0646 [Streptococcus pneumoniae GA47388]
gi|353866393|gb|EHE46295.1| hypothetical protein SPAR109_0629 [Streptococcus pneumoniae
GA47976]
gi|353871143|gb|EHE51014.1| hypothetical protein SPAR118_0652 [Streptococcus pneumoniae
GA54644]
gi|353889323|gb|EHE69094.1| hypothetical protein SPAR17_0658 [Streptococcus pneumoniae GA08780]
gi|353905836|gb|EHE81252.1| hypothetical protein SPAR28_0632 [Streptococcus pneumoniae GA13338]
gi|379559349|gb|EHZ24378.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13723]
gi|379583953|gb|EHZ48830.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA43257]
gi|379597343|gb|EHZ62146.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47461]
gi|379612604|gb|EHZ77321.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA49542]
gi|379638733|gb|EIA03278.1| pseudouridine synthase family protein [Streptococcus pneumoniae
England14-9]
gi|395577208|gb|EJG37753.1| hypothetical protein AMCSP20_000692 [Streptococcus pneumoniae
2090008]
gi|395589533|gb|EJG49851.1| hypothetical protein AMCSP14_000631 [Streptococcus pneumoniae
2070531]
gi|395589953|gb|EJG50268.1| hypothetical protein AMCSP05_000613 [Streptococcus pneumoniae
2070425]
gi|395598319|gb|EJG58524.1| hypothetical protein AMCSP01_000705 [Streptococcus pneumoniae
2061376]
gi|395881830|gb|EJG92878.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17301]
gi|395892865|gb|EJH03855.1| pseudouridine synthase [Streptococcus pneumoniae GA58581]
gi|395894790|gb|EJH05767.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|395895209|gb|EJH06185.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|395899968|gb|EJH10907.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
gi|395903309|gb|EJH14241.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|395912010|gb|EJH22873.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
Length = 241
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|221234852|ref|YP_002517288.1| ribosomal small subunit pseudouridine synthase A [Caulobacter
crescentus NA1000]
gi|220964024|gb|ACL95380.1| ribosomal small subunit pseudouridine synthase A [Caulobacter
crescentus NA1000]
Length = 246
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
++D + W R+PGL TVGRLD T+GLI++T+DGDF V P + K Y+A
Sbjct: 91 IYDLLPRRWRLRDPGLS-----TVGRLDKDTSGLILITDDGDFLHRVISPKRHVPKTYLA 145
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPR-IRIVVHEGRNHEVREL 121
T+D +N + GT++ + P LLP + D+ R+ + EGR H+VR +
Sbjct: 146 TLDRPLNGSEGEVFAAGTLMLDSEEKP----LLPARLDVVNAHAARLTITEGRYHQVRRM 201
Query: 122 VKNAGLKLYSLKRLRIGGFRLPSDLGIGMH 151
G + +L R RIGG LP DL G H
Sbjct: 202 FAAVGNHVVALHRERIGGIALPDDLAAGQH 231
>gi|421267895|ref|ZP_15718767.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR95]
gi|395871319|gb|EJG82425.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR95]
Length = 241
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|354807068|ref|ZP_09040544.1| hypothetical protein CRL705_440 [Lactobacillus curvatus CRL 705]
gi|354514448|gb|EHE86419.1| hypothetical protein CRL705_440 [Lactobacillus curvatus CRL 705]
Length = 236
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P R LF VGRLD TTGL+++TNDGD + A+ P + K Y ATI G V
Sbjct: 87 PADLRDDLFPVGRLDKDTTGLLLLTNDGDLSHALLSPKKHVSKVYRATIAGIVTAEDQAR 146
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
G V+ P +E+L +I + +HEG+ H+V+ + G ++ +L+RL
Sbjct: 147 FEAGLVLSDFTAQPAQLEILSVDEAQQESQITVEIHEGKFHQVKRMFHAVGKEVLTLERL 206
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLKLM 162
++G LP DL G + L ++L L+
Sbjct: 207 KMGPLALPDDLDRGQYRALTDAELALL 233
>gi|414564701|ref|YP_006043662.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
equi subsp. zooepidemicus ATCC 35246]
gi|338847766|gb|AEJ25978.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
equi subsp. zooepidemicus ATCC 35246]
Length = 240
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G V K L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEINKVYLARVKGVVTKESLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ +PD R + + +HEGR+H+V+++ + G + L R + G
Sbjct: 151 VVIDGKKTKPARYRIIRVEPDKNRSIVELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGS 210
Query: 140 F 140
Sbjct: 211 L 211
>gi|195978740|ref|YP_002123984.1| ribosomal large subunit pseudouridine synthase B RluB
[Streptococcus equi subsp. zooepidemicus MGCS10565]
gi|195975445|gb|ACG62971.1| ribosomal large subunit pseudouridine synthase B RluB
[Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 266
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G V K L ++ G
Sbjct: 117 KERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGVVTKESLRPLTRG 176
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ +PD R + + +HEGR+H+V+++ + G + L R + G
Sbjct: 177 VVIDGKKTKPARYRIIRVEPDKNRSIVELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGS 236
Query: 140 F 140
Sbjct: 237 L 237
>gi|421452897|ref|ZP_15902253.1| Ribosomal small subunit pseudouridine synthase A [Streptococcus
salivarius K12]
gi|400181206|gb|EJO15473.1| Ribosomal small subunit pseudouridine synthase A [Streptococcus
salivarius K12]
Length = 243
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 82/142 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A +DG +++ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVDGIMDQEDILAFEKGIE 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ D ++I + EG+ H+V+ +V G ++ L+R+ +G
Sbjct: 155 LKDHTCQPAKLEIVSVDRDAGTSLVQITIAEGKFHQVKRMVAACGKEVTELQRMSMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDLKLMG 163
LP DL +G L + +L+ +
Sbjct: 215 LPDDLELGAWRRLTEEELEALA 236
>gi|418964745|ref|ZP_13516534.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
constellatus subsp. constellatus SK53]
gi|383344456|gb|EID22621.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
constellatus subsp. constellatus SK53]
Length = 241
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G +K L +++G
Sbjct: 93 RIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGIADKEVLRPLTKGVK 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V E+L R I++ +HEGRNH+V+++ + GL++ L R + G
Sbjct: 153 IDGKKTKPAVYEILKVDSVKNRSIIQLTIHEGRNHQVKKMFEAVGLQVDKLSRTQFGHLN 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|22537733|ref|NP_688584.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae 2603V/R]
gi|76787925|ref|YP_330211.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae A909]
gi|76799444|ref|ZP_00781590.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae 18RS21]
gi|77406891|ref|ZP_00783916.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae H36B]
gi|77409463|ref|ZP_00786156.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae COH1]
gi|77412369|ref|ZP_00788680.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae CJB111]
gi|339301006|ref|ZP_08650130.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae ATCC 13813]
gi|406709976|ref|YP_006764702.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae GD201008-001]
gi|417005978|ref|ZP_11944548.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae FSL S3-026]
gi|421148087|ref|ZP_15607759.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae GB00112]
gi|424048960|ref|ZP_17786511.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae ZQ0910]
gi|22534623|gb|AAN00457.1|AE014264_12 ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae 2603V/R]
gi|76562982|gb|ABA45566.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae A909]
gi|76585200|gb|EAO61812.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae 18RS21]
gi|77161589|gb|EAO72589.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae CJB111]
gi|77171930|gb|EAO75106.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae COH1]
gi|77174500|gb|EAO77344.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae H36B]
gi|319745532|gb|EFV97834.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae ATCC 13813]
gi|341576159|gb|EGS26570.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae FSL S3-026]
gi|389649582|gb|EIM71059.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae ZQ0910]
gi|401685425|gb|EJS81433.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae GB00112]
gi|406650861|gb|AFS46262.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae GD201008-001]
Length = 240
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R + G
Sbjct: 151 VVIDGKKTKPARYTIIKVDHEKNRSVVELTIHEGRNHQVKKMFEQVGLLVDKLSRTQFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|257870825|ref|ZP_05650478.1| pseudouridine synthase [Enterococcus gallinarum EG2]
gi|357051439|ref|ZP_09112631.1| hypothetical protein HMPREF9478_02614 [Enterococcus saccharolyticus
30_1]
gi|257804989|gb|EEV33811.1| pseudouridine synthase [Enterococcus gallinarum EG2]
gi|355379775|gb|EHG26926.1| hypothetical protein HMPREF9478_02614 [Enterococcus saccharolyticus
30_1]
Length = 241
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+++TNDG A + P ++KEY A + G + + +G
Sbjct: 92 RRDLFPVGRLDKDTEGLLLITNDGQLAHRLLSPKKHVEKEYYAEVRGIMTEEDRHQFLQG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++G P + +L I +++HEG+ H+V+ +V+ G ++ LKR R+GG
Sbjct: 152 IELDGETLMPAQLTILKVDEQAETSTITLILHEGKFHQVKRMVQAVGKEVTYLKRTRMGG 211
Query: 140 FRLPSDLGIGMHVELKQSDL 159
+LP DL +G + + + +L
Sbjct: 212 LQLPKDLALGEYRSVTEKEL 231
>gi|329115789|ref|ZP_08244506.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
parauberis NCFD 2020]
gi|333905607|ref|YP_004479478.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
parauberis KCTC 11537]
gi|326906194|gb|EGE53108.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
parauberis NCFD 2020]
gi|333120872|gb|AEF25806.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
parauberis KCTC 11537]
gi|456370336|gb|EMF49232.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
parauberis KRS-02109]
gi|457096091|gb|EMG26562.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
parauberis KRS-02083]
Length = 241
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 74/123 (60%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLLLTNDGDFTDMMIHPRNEIDKVYLARVKGIATKDNLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R + G
Sbjct: 151 VVIDGKKTKPARYNIIRVEADKNRSIVELTIHEGRNHQVKKMFESVGLIVDKLSRTQFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|312622236|ref|YP_004023849.1| pseudouridine synthase [Caldicellulosiruptor kronotskyensis 2002]
gi|312202703|gb|ADQ46030.1| pseudouridine synthase [Caldicellulosiruptor kronotskyensis 2002]
Length = 240
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGLI++TNDG+FA V+HP ++K YIA I G +K+ + +G +
Sbjct: 100 RVFPVGRLDFDTTGLILLTNDGEFAYKVTHPKHDIEKTYIALIKGIPSKKEIERFEKGLL 159
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + I +HEGRN ++R++ G K+ LKR+ IG +
Sbjct: 160 IDGKMTAPAKFKILKLING--NALVEIKIHEGRNRQIRKMCDQIGHKVLKLKRIAIGKLQ 217
Query: 142 L 142
L
Sbjct: 218 L 218
>gi|420144113|ref|ZP_14651601.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
gi|391855565|gb|EIT66114.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
Length = 238
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HP ++K YIA ++G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLLLTNDGEFTNLMTHPRHGVEKVYIAKVEGQANKENLRPLTLG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + +HEG+NH+V+++ GL + L R++ G
Sbjct: 151 MTIEGKKVSPARYEIMKQDKAKNSSLVSLTIHEGQNHQVKKMFAAVGLPVQKLSRVQYGP 210
Query: 140 FRL 142
L
Sbjct: 211 LSL 213
>gi|381394435|ref|ZP_09920152.1| 23S rRNA pseudouridine2605 synthase [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330037|dbj|GAB55285.1| 23S rRNA pseudouridine2605 synthase [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 298
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 78/142 (54%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R TVGRLD+ T+GL++ TNDG+ A + HPS ++++EY I G V +
Sbjct: 96 ERLPKLTGERWITVGRLDINTSGLLLFTNDGELANRLMHPSHEVEREYAVRIFGEVTPKM 155
Query: 73 LIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
L +S+G +E + + + P P+ + + EGRN EVR L ++ G+++ L
Sbjct: 156 LRILSQGVELEDGSAKFNHIHVRPGDPESNNRWFNVTLSEGRNREVRRLWESQGVQVSRL 215
Query: 133 KRLRIGGFRLPSDLGIGMHVEL 154
R+R G L L G VEL
Sbjct: 216 MRVRYGNLELFKRLPQGAWVEL 237
>gi|148985263|ref|ZP_01818486.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP3-BS71]
gi|387757128|ref|YP_006064107.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae OXC141]
gi|418231764|ref|ZP_12858352.1| hypothetical protein SPAR13_0665 [Streptococcus pneumoniae GA07228]
gi|418236062|ref|ZP_12862631.1| hypothetical protein SPAR59_0604 [Streptococcus pneumoniae GA19690]
gi|419479533|ref|ZP_14019341.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA19101]
gi|419499224|ref|ZP_14038923.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47597]
gi|147922461|gb|EDK73580.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP3-BS71]
gi|301799717|emb|CBW32282.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae OXC141]
gi|353888070|gb|EHE67846.1| hypothetical protein SPAR13_0665 [Streptococcus pneumoniae GA07228]
gi|353893991|gb|EHE73736.1| hypothetical protein SPAR59_0604 [Streptococcus pneumoniae GA19690]
gi|379573187|gb|EHZ38143.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA19101]
gi|379602278|gb|EHZ67049.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47597]
gi|429317559|emb|CCP37343.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae SPN034156]
gi|429319101|emb|CCP32336.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae SPN034183]
gi|429320916|emb|CCP34310.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae SPN994039]
gi|429322736|emb|CCP30351.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae SPN994038]
Length = 241
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|387760827|ref|YP_006067804.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus salivarius 57.I]
gi|339291594|gb|AEJ52941.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus salivarius 57.I]
Length = 243
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 82/141 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A +DG +N+ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVDGIMNQEDILAFEKGIE 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ ++I + EG+ H+V+ +V G ++ L+RL +G
Sbjct: 155 LKDHTCQPAKLEIISVDRVTGTSLVQITIAEGKFHQVKRMVAACGKEVTELQRLSMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
LP+DL +G L + +L+ +
Sbjct: 215 LPNDLEVGAWRRLTEEELEAL 235
>gi|421767760|ref|ZP_16204501.1| Ribosomal large subunit pseudouridine synthase B [Lactococcus
garvieae DCC43]
gi|407623716|gb|EKF50532.1| Ribosomal large subunit pseudouridine synthase B [Lactococcus
garvieae DCC43]
Length = 238
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HP ++K YIA ++G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLLLTNDGEFTNLMTHPRHGVEKVYIAKVEGQANKENLRPLTLG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IEG +P E++ + + +HEG+NH+V+++ GL + L R++ G
Sbjct: 151 MTIEGKKVSPARYEIMKQDKAKNSSLVSLTIHEGQNHQVKKMFAAVGLPVQKLSRVQYGP 210
Query: 140 FRL 142
L
Sbjct: 211 LSL 213
>gi|366086028|ref|ZP_09452513.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
zeae KCTC 3804]
Length = 248
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RL+ VGRLD T+GL+++TNDG+ A + HP L+K+Y+A ++G N+ L + G
Sbjct: 96 RERLYPVGRLDYDTSGLLVMTNDGELANHLMHPRYALEKKYVAKVEGIPNRPALAPLKAG 155
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
V++G P E+L + + +H+G NH+V+++ K G + L R G
Sbjct: 156 VVVDGKMTAPAKFEILSTDKAKKTAIVALTIHQGMNHQVKKMFKAVGFPVIKLSREAYGN 215
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L + L G H E+K +L
Sbjct: 216 LTL-AGLQPGEHREIKPQEL 234
>gi|397670679|ref|YP_006512214.1| pseudouridylate synthase [Propionibacterium propionicum F0230a]
gi|395142418|gb|AFN46525.1| pseudouridylate synthase [Propionibacterium propionicum F0230a]
Length = 244
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 85/147 (57%), Gaps = 5/147 (3%)
Query: 18 LPR--PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
LPR RLF +GRLD T GLI++TNDG+FA +SHPS ++ K Y+A + G V++R +
Sbjct: 95 LPRKSERLFHIGRLDTDTEGLILLTNDGEFAHRLSHPSFEVPKTYVAEVAGIVDQRTIQR 154
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G +E PD V+LL R + I +HEGRN VR ++ + G + L R
Sbjct: 155 LEKGLRLEDGPVKPDRVKLLSRGES--RSLLAITLHEGRNRIVRRMMDSVGHPVDRLART 212
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLKLM 162
IG RL L IG EL + +L ++
Sbjct: 213 GIGPVRL-GQLTIGTTRELTREELGVL 238
>gi|417937618|ref|ZP_12580918.1| pseudouridylate synthase [Streptococcus infantis SK970]
gi|343391882|gb|EGV04455.1| pseudouridylate synthase [Streptococcus infantis SK970]
Length = 241
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L +L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 90 LQSAQLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPNHIQQFK 149
Query: 78 EGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
G V ++GT C P +E+L P + R I I EG+ H+V+++ + G+K+ +LKR++
Sbjct: 150 NGIVFLDGTICKPAQLEILSSSPSLSRATITI--SEGKFHQVKKMFLSVGVKVTALKRVQ 207
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G F L DL G + L Q +LK++
Sbjct: 208 FGDFILDPDLTEGQYRHLNQEELKII 233
>gi|282855434|ref|ZP_06264755.1| ribosomal large subunit pseudouridine synthase B [Pyramidobacter
piscolens W5455]
gi|282586730|gb|EFB91977.1| ribosomal large subunit pseudouridine synthase B [Pyramidobacter
piscolens W5455]
Length = 238
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 6/129 (4%)
Query: 18 LPRP----RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
LPR RLF VGRLD+ + GL+++TNDGDF+Q + HP + + KEY +D N+R +
Sbjct: 86 LPREYDYYRLFPVGRLDLQSEGLLMLTNDGDFSQEMIHPRAGITKEYEVLLDRMPNEREM 145
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ +GTV EG P V+ L +P+ +R V++EG E+R + + AGLK+ L
Sbjct: 146 RQLRDGTVFEGKRLHPVGVDFLQREPE--GRWLRFVLNEGVKREIRLIAEGAGLKVQVLF 203
Query: 134 RLRIGGFRL 142
R RIG L
Sbjct: 204 RRRIGRMEL 212
>gi|335029152|ref|ZP_08522664.1| putative 16S pseudouridylate 516 synthase [Streptococcus infantis
SK1076]
gi|334269553|gb|EGL87970.1| putative 16S pseudouridylate 516 synthase [Streptococcus infantis
SK1076]
Length = 241
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L +L+ +GRLD TTG +I+T++G + HP + K Y ++G + H+
Sbjct: 90 LQSDQLYAIGRLDRDTTGFLILTDNGPLGFQLLHPQYHVDKTYQVEVNGPLTPNHIQEFK 149
Query: 78 EGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+G V ++GT C P +E+L P R I + EG+ H+V+++ + G+K+ +LKR++
Sbjct: 150 DGIVFLDGTVCKPAQLEILASSPS--HSRATITISEGKFHQVKKMFLSVGVKVTALKRVQ 207
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G F L DL G + L Q +LK++
Sbjct: 208 FGDFLLDPDLAEGQYRHLNQEELKII 233
>gi|392394349|ref|YP_006430951.1| pseudouridine synthase family protein [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390525427|gb|AFM01158.1| pseudouridine synthase family protein [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 255
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDGD A + HPS ++K Y + + ++ L + +G +
Sbjct: 108 RVYPVGRLDYDTSGLLLLTNDGDLAHRLMHPSYGVEKTYRVEVGEKIPEQVLKRLEKGVI 167
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V+ + + P I +HEGRN +VR + K G L +LKR+R G +
Sbjct: 168 LEDGKTAPARVKEVSQKGRGSVPTYEITIHEGRNRQVRRMFKTIGFPLITLKRIRFGSLQ 227
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L +L G L Q++++ +
Sbjct: 228 LDHNLAPGAFRALSQTEIRQL 248
>gi|357636425|ref|ZP_09134300.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
macacae NCTC 11558]
gi|357584879|gb|EHJ52082.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
macacae NCTC 11558]
Length = 246
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDQMIHPRNEIDKVYLARVKGLANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+I+ P +L R I + +HEGRNH+V+++++ GL + L R+R G
Sbjct: 151 VLIDDKKTKPAHYRILKVDTVKNRSVIELTIHEGRNHQVKKMLEAVGLLVDKLSRIRFGT 210
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L LG G L + ++
Sbjct: 211 IDLKG-LGSGESRRLSKKEI 229
>gi|312862494|ref|ZP_07722736.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
vestibularis F0396]
gi|322517477|ref|ZP_08070350.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
vestibularis ATCC 49124]
gi|311101899|gb|EFQ60100.1| pseudouridine synthase B, ribosomal large subunit [Streptococcus
vestibularis F0396]
gi|322123959|gb|EFX95518.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
vestibularis ATCC 49124]
Length = 241
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGL+I+TNDGDF + HP +++ K Y+A + G K +L + G
Sbjct: 91 KERIYPVGRLDWDTTGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLIRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
V++G P ++ + R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 151 VVLDGKKTQPARYNIIKVDHEKNRSVVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|339450066|ref|ZP_08653436.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
lactis KCTC 3528]
Length = 249
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG++++TNDG A + HP S++ K Y+A ++G L + G V
Sbjct: 99 RVYPVGRLDYDTTGVLLLTNDGVIANQLMHPKSRVDKVYMAKVEGIATDEKLAPLKRGVV 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + D +R+++HEGRNH+V+ +++ GL + L R + F
Sbjct: 159 IQGRKTAPARVSVERVDKDKKTSMVRVIIHEGRNHQVKNMLQKVGLPVAKLTREQYAFFA 218
Query: 142 LPSDLGIGMHVELKQSDLK 160
L + L G + +L +++K
Sbjct: 219 L-TGLQSGEYRKLTSAEVK 236
>gi|422459123|ref|ZP_16535771.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
gi|315103786|gb|EFT75762.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
Length = 245
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 17 GLPRP-RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
G+PR RLF VGRLD T+GLI++TNDG+FA ++HPS K+ K Y+A ++G V+ + +
Sbjct: 96 GVPRGIRLFHVGRLDTETSGLILLTNDGEFANRMTHPSYKVLKTYLADVEGRVDDKVIHR 155
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+S+G +E PD V L+ Q + + +HEGRN VR ++ + + L R
Sbjct: 156 LSKGLTLEDGPVKPDAVRLV--QASEEHSLVEVSLHEGRNRIVRRIMDSVAHPVRRLSRT 213
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
IG RL LG G EL +L
Sbjct: 214 AIGPVRLKR-LGRGDMRELTHEEL 236
>gi|88798249|ref|ZP_01113835.1| pseudouridine synthase (makes pseudouridine2605 in 23 S RNA)
[Reinekea blandensis MED297]
gi|88779025|gb|EAR10214.1| pseudouridine synthase (makes pseudouridine2605 in 23 S RNA)
[Reinekea sp. MED297]
Length = 282
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P +P R VGRLD+ T+GL++ TNDG+ A + HPS ++++EY + G V + ++
Sbjct: 93 RLPRIPGERWIAVGRLDINTSGLLLFTNDGELANRLMHPSHQIEREYAVRVLGDVQQENI 152
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
A+ EG +E V+ + +V+ EGRN EVR L ++ G ++ LK
Sbjct: 153 DAMCEGVELEDGPAKFTDVQFFDGKG--SNLWFHVVIMEGRNREVRRLWESQGFQVSRLK 210
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDL 159
R+R G L SD+ G E+ + D+
Sbjct: 211 RVRYGSVFLDSDVRAGTWQEMAKKDI 236
>gi|160872807|ref|ZP_02062939.1| RNA pseudouridine synthase family protein [Rickettsiella grylli]
gi|159121606|gb|EDP46944.1| RNA pseudouridine synthase family protein [Rickettsiella grylli]
Length = 245
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 2/145 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R +GRLD+ T+GL+I TN+G+FA +SHPS ++++EY+ + G VNK L
Sbjct: 94 PRLRDQRWVMIGRLDMNTSGLLIFTNEGEFAYRLSHPSYQIEREYVVRVLGKVNKSMLDR 153
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G +++ ++ +V+ EGRN EVR L + G+ + L R+
Sbjct: 154 LKKGVMLKEKRAAFTSIQ--ASGGSGANRWYHVVLKEGRNREVRRLWETQGVTVSRLMRI 211
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLK 160
R G LP DL G ELK +K
Sbjct: 212 RFGNVSLPHDLKKGHFFELKTKAIK 236
>gi|420157118|ref|ZP_14663958.1| pseudouridylate synthase [Clostridium sp. MSTE9]
gi|394757128|gb|EJF40187.1| pseudouridylate synthase [Clostridium sp. MSTE9]
Length = 270
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD + GL+++TNDG FA A++HPS + K Y T+ V + L I+ G V
Sbjct: 98 RVYPVGRLDRESEGLLLMTNDGAFANAMTHPSKHVPKTYRVTVRPGVTEDQLTQIAVGIV 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V ++ +P R + IV++EGRN E+R++ + GL + LKR +G R
Sbjct: 158 IDGQKTAPANVHIISQEPG--RVVLEIVLYEGRNREIRKMCETLGLDVARLKRTAVGPVR 215
Query: 142 L 142
L
Sbjct: 216 L 216
>gi|225017146|ref|ZP_03706338.1| hypothetical protein CLOSTMETH_01071 [Clostridium methylpentosum
DSM 5476]
gi|224950065|gb|EEG31274.1| hypothetical protein CLOSTMETH_01071 [Clostridium methylpentosum
DSM 5476]
Length = 248
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R LF GRLD T G +++T+DG+FA + P + K Y A +DG + + L
Sbjct: 91 PELRRRGLFPAGRLDRDTVGFVLITDDGEFAHNILSPRHHVPKTYEAGLDGPIGENELSV 150
Query: 76 ISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+++G V+ +GT C P + +L RP I+IV+ EGR H+++ + G ++ +LKR
Sbjct: 151 LAQGVVLGDGTKCRPAELTVLQSG---ERPLIQIVIVEGRYHQIKRMFAAVGRRVLTLKR 207
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLMGWKS 166
+IGG L L G + + S+L+ + K+
Sbjct: 208 TKIGGLALDPSLKEGDCIAISPSNLEKIQMKT 239
>gi|357238127|ref|ZP_09125464.1| pseudouridylate synthase [Streptococcus ictaluri 707-05]
gi|356752850|gb|EHI69971.1| pseudouridylate synthase [Streptococcus ictaluri 707-05]
Length = 240
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G K +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGIATKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + D R + + +HEGRNH+V+++ ++ GL + L R +
Sbjct: 151 VVIDGKKTKPARYNIVRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTQFST 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|363890954|ref|ZP_09318248.1| hypothetical protein HMPREF9628_00753 [Eubacteriaceae bacterium
CM5]
gi|361962721|gb|EHL15830.1| hypothetical protein HMPREF9628_00753 [Eubacteriaceae bacterium
CM5]
Length = 232
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
++ VGRLD ++GLI+VTNDGD A ++HP S + K YIAT++G +++ + EG ++
Sbjct: 95 VYPVGRLDYDSSGLILVTNDGDIANKLTHPRSHISKTYIATLNGRLSENQMKQFREGILL 154
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ P + L D R+V++EGRN ++R ++ G ++ LKR+ IG ++
Sbjct: 155 DSKKTLPSEISLY----DFSENSYRVVLYEGRNRQIRNMISALGREVKELKRISIGKIKI 210
>gi|363893127|ref|ZP_09320266.1| pseudouridine synthase [Eubacteriaceae bacterium CM2]
gi|361961651|gb|EHL14834.1| pseudouridine synthase [Eubacteriaceae bacterium CM2]
Length = 232
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
++ VGRLD ++GLI+VTNDGD A ++HP S + K YI T++G +++ + EG ++
Sbjct: 95 VYPVGRLDYDSSGLILVTNDGDIANKLTHPKSHISKTYIVTLNGRLSENQMKQFREGILL 154
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G P + L D R+V++EGRN ++R ++ G ++ LKR+ IG ++
Sbjct: 155 DGKKTLPAEISLY----DFSENSYRVVLYEGRNRQIRNMISALGREVKELKRISIGKIKI 210
>gi|225867942|ref|YP_002743890.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
equi subsp. zooepidemicus]
gi|225871142|ref|YP_002747089.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
equi subsp. equi 4047]
gi|225700546|emb|CAW95028.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
equi subsp. equi 4047]
gi|225701218|emb|CAW98156.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
equi subsp. zooepidemicus]
Length = 240
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP +++ K Y+A + G V K L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGVVTKESLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ +PD R + + +HEGR+H+V+++ + G + L R + G
Sbjct: 151 VVIDGKKTKPARYRIIRVEPDKNRSIVELTIHEGRHHQVKKMFEVVGHLVDKLSRTQFGS 210
Query: 140 F 140
Sbjct: 211 L 211
>gi|326692499|ref|ZP_08229504.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
argentinum KCTC 3773]
Length = 249
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG++++TNDG A + HP S++ K Y+A ++G L + G V
Sbjct: 99 RVYPVGRLDYDTTGVLLLTNDGVIANQLMHPKSRVDKVYMAKVEGIATDEKLAPLKRGVV 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + D +R+++HEGRNH+V+ +++ GL + L R + F
Sbjct: 159 IQGRKTAPARVSVERVDKDKKTSMVRVIIHEGRNHQVKNMLQKVGLPVAKLTREQYAFFD 218
Query: 142 LPSDLGIGMHVELKQSDLK 160
L + L G + +L +++K
Sbjct: 219 L-TGLQSGEYRKLTSAEVK 236
>gi|418112035|ref|ZP_12749038.1| hypothetical protein SPAR72_0733 [Streptococcus pneumoniae GA41538]
gi|419466818|ref|ZP_14006700.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05248]
gi|419512089|ref|ZP_14051723.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05578]
gi|419516373|ref|ZP_14055991.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02506]
gi|421233692|ref|ZP_15690314.1| hypothetical protein AMCSP02_000688 [Streptococcus pneumoniae
2061617]
gi|421248997|ref|ZP_15705460.1| hypothetical protein AMCSP19_000615 [Streptococcus pneumoniae
2082239]
gi|421282880|ref|ZP_15733669.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
gi|353785684|gb|EHD66102.1| hypothetical protein SPAR72_0733 [Streptococcus pneumoniae GA41538]
gi|379543531|gb|EHZ08680.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05248]
gi|379636559|gb|EIA01117.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05578]
gi|379640376|gb|EIA04915.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02506]
gi|395602589|gb|EJG62731.1| hypothetical protein AMCSP02_000688 [Streptococcus pneumoniae
2061617]
gi|395615626|gb|EJG75642.1| hypothetical protein AMCSP19_000615 [Streptococcus pneumoniae
2082239]
gi|395882746|gb|EJG93790.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
Length = 241
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|399923667|ref|ZP_10781025.1| pseudouridine synthase [Peptoniphilus rhinitidis 1-13]
Length = 235
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD+ TTGL+ +TNDG+ A + HP K+ K+YIAT++G N R L + EG
Sbjct: 94 RVYPVGRLDIDTTGLVFLTNDGELANILMHPKYKIGKKYIATVEGTPNARELSILREGLD 153
Query: 82 IEGTHCTPDVVELLPP--QPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I +P V++L Q I I I + EG+NH+++ + G K+ LKR+ +G
Sbjct: 154 IRDLKTSPANVKILKSFKQDSI----IEIEIFEGQNHQIKRMFDYIGHKVKKLKRISMGE 209
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L +L +G + L + ++K +
Sbjct: 210 IELL-NLDVGNYRYLSEKEIKYL 231
>gi|427392458|ref|ZP_18886463.1| pseudouridine synthase [Alloiococcus otitis ATCC 51267]
gi|425731419|gb|EKU94237.1| pseudouridine synthase [Alloiococcus otitis ATCC 51267]
Length = 239
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG +++TNDGD A + HP + +K Y A + G +++ L + +G V
Sbjct: 94 RIYPVGRLDYDTTGALLLTNDGDLANKLMHPRYEFEKTYRAKVKGLISQSSLAQLEQGLV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P +L+ + + + +HEG+NH+V++++ G + L RL G R
Sbjct: 154 IDGEKTAPAKAKLIEYDQASDKSMVELRIHEGKNHQVKKMLDRVGHPVVKLTRLAYGFLR 213
Query: 142 LPSDLGIGMHVELKQSDLK 160
+ DL G ELK ++++
Sbjct: 214 V-DDLDGGQWRELKNAEVR 231
>gi|340398322|ref|YP_004727347.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|418017337|ref|ZP_12656896.1| pseudouridine synthase [Streptococcus salivarius M18]
gi|338742315|emb|CCB92820.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|345528030|gb|EGX31338.1| pseudouridine synthase [Streptococcus salivarius M18]
Length = 243
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 82/141 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A +DG + + ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVDGIMEQEDILAFEKGIE 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ + ++I + EG+ H+V+ +V G ++ L+RL +G
Sbjct: 155 LKDHTCQPAKLEIVSVDRAVGTSLVQITIAEGKFHQVKRMVAACGKEVTELQRLSMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
LP+DL +G L + +L+ +
Sbjct: 215 LPNDLEVGAWRRLTEEELEAL 235
>gi|289428195|ref|ZP_06429891.1| pseudouridylate synthase [Propionibacterium acnes J165]
gi|295130922|ref|YP_003581585.1| pseudouridylate synthase [Propionibacterium acnes SK137]
gi|354607350|ref|ZP_09025320.1| hypothetical protein HMPREF1003_01887 [Propionibacterium sp.
5_U_42AFAA]
gi|365963079|ref|YP_004944645.1| pseudouridylate synthase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965320|ref|YP_004946885.1| pseudouridylate synthase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974253|ref|YP_004955812.1| pseudouridylate synthase [Propionibacterium acnes TypeIA2 P.acn33]
gi|386024345|ref|YP_005942650.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes 266]
gi|407935797|ref|YP_006851439.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes C1]
gi|417929290|ref|ZP_12572674.1| pseudouridylate synthase [Propionibacterium acnes SK182]
gi|422385784|ref|ZP_16465909.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL096PA3]
gi|422387598|ref|ZP_16467710.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL096PA2]
gi|422392396|ref|ZP_16472466.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL099PA1]
gi|422426225|ref|ZP_16503149.1| hypothetical protein HMPREF9570_02678 [Propionibacterium acnes
HL043PA1]
gi|422427681|ref|ZP_16504592.1| hypothetical protein HMPREF9579_01456 [Propionibacterium acnes
HL087PA1]
gi|422431417|ref|ZP_16508295.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
gi|422433579|ref|ZP_16510447.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
gi|422436151|ref|ZP_16513008.1| hypothetical protein HMPREF9586_02253 [Propionibacterium acnes
HL083PA2]
gi|422444458|ref|ZP_16521252.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
gi|422445160|ref|ZP_16521914.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
gi|422449474|ref|ZP_16526199.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
gi|422450845|ref|ZP_16527558.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
gi|422453720|ref|ZP_16530407.1| hypothetical protein HMPREF9581_01384 [Propionibacterium acnes
HL087PA3]
gi|422462252|ref|ZP_16538876.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
gi|422475476|ref|ZP_16551923.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
gi|422478637|ref|ZP_16555056.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
gi|422481012|ref|ZP_16557415.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
gi|422483519|ref|ZP_16559908.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
gi|422486197|ref|ZP_16562553.1| hypothetical protein HMPREF9571_02471 [Propionibacterium acnes
HL043PA2]
gi|422488250|ref|ZP_16564579.1| hypothetical protein HMPREF9568_01854 [Propionibacterium acnes
HL013PA2]
gi|422490353|ref|ZP_16566668.1| hypothetical protein HMPREF9563_01406 [Propionibacterium acnes
HL020PA1]
gi|422498122|ref|ZP_16574394.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
gi|422501724|ref|ZP_16577978.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
gi|422501926|ref|ZP_16578171.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
gi|422505883|ref|ZP_16582106.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
gi|422507328|ref|ZP_16583532.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
gi|422510247|ref|ZP_16586393.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
gi|422513770|ref|ZP_16589893.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
gi|422518985|ref|ZP_16595053.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
gi|422522242|ref|ZP_16598272.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
gi|422527628|ref|ZP_16603618.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
gi|422530154|ref|ZP_16606118.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
gi|422534730|ref|ZP_16610654.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
gi|422536996|ref|ZP_16612884.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
gi|422539049|ref|ZP_16614922.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
gi|422543289|ref|ZP_16619139.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
gi|422548213|ref|ZP_16624029.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
gi|422550102|ref|ZP_16625902.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
gi|422551853|ref|ZP_16627644.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
gi|422555906|ref|ZP_16631668.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
gi|422558622|ref|ZP_16634362.1| hypothetical protein HMPREF9588_02444 [Propionibacterium acnes
HL025PA2]
gi|422560604|ref|ZP_16636291.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
gi|422562656|ref|ZP_16638333.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
gi|422568265|ref|ZP_16643883.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
gi|422571686|ref|ZP_16647267.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
gi|422579207|ref|ZP_16654730.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
gi|289158576|gb|EFD06783.1| pseudouridylate synthase [Propionibacterium acnes J165]
gi|291375273|gb|ADD99127.1| pseudouridylate synthase [Propionibacterium acnes SK137]
gi|313764054|gb|EFS35418.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
gi|313771915|gb|EFS37881.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
gi|313807148|gb|EFS45643.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
gi|313809640|gb|EFS47376.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
gi|313816404|gb|EFS54118.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
gi|313819344|gb|EFS57058.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
gi|313819993|gb|EFS57707.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
gi|313823215|gb|EFS60929.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
gi|313824997|gb|EFS62711.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
gi|313827299|gb|EFS65013.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
gi|313829960|gb|EFS67674.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
gi|313833036|gb|EFS70750.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
gi|314914915|gb|EFS78746.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
gi|314917860|gb|EFS81691.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
gi|314919749|gb|EFS83580.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
gi|314924832|gb|EFS88663.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
gi|314930009|gb|EFS93840.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
gi|314956415|gb|EFT00727.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
gi|314957284|gb|EFT01387.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
gi|314960611|gb|EFT04713.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
gi|314967733|gb|EFT11832.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
gi|314972874|gb|EFT16971.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
gi|314975703|gb|EFT19798.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
gi|314978089|gb|EFT22183.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
gi|314984113|gb|EFT28205.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
gi|314986250|gb|EFT30342.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
gi|314989536|gb|EFT33627.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
gi|315080909|gb|EFT52885.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
gi|315084832|gb|EFT56808.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
gi|315086005|gb|EFT57981.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
gi|315088276|gb|EFT60252.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
gi|315095697|gb|EFT67673.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
gi|315098205|gb|EFT70181.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
gi|315101641|gb|EFT73617.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
gi|315109460|gb|EFT81436.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
gi|327327900|gb|EGE69674.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL096PA3]
gi|327330039|gb|EGE71792.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL096PA2]
gi|327442730|gb|EGE89384.1| hypothetical protein HMPREF9570_02678 [Propionibacterium acnes
HL043PA1]
gi|327443872|gb|EGE90526.1| hypothetical protein HMPREF9571_02471 [Propionibacterium acnes
HL043PA2]
gi|327443940|gb|EGE90594.1| hypothetical protein HMPREF9568_01854 [Propionibacterium acnes
HL013PA2]
gi|327452345|gb|EGE98999.1| hypothetical protein HMPREF9581_01384 [Propionibacterium acnes
HL087PA3]
gi|327452780|gb|EGE99434.1| hypothetical protein HMPREF9586_02253 [Propionibacterium acnes
HL083PA2]
gi|328752647|gb|EGF66263.1| hypothetical protein HMPREF9588_02444 [Propionibacterium acnes
HL025PA2]
gi|328753801|gb|EGF67417.1| hypothetical protein HMPREF9579_01456 [Propionibacterium acnes
HL087PA1]
gi|328755029|gb|EGF68645.1| hypothetical protein HMPREF9563_01406 [Propionibacterium acnes
HL020PA1]
gi|328761441|gb|EGF74967.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL099PA1]
gi|332675803|gb|AEE72619.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes 266]
gi|340773413|gb|EGR95905.1| pseudouridylate synthase [Propionibacterium acnes SK182]
gi|353557465|gb|EHC26834.1| hypothetical protein HMPREF1003_01887 [Propionibacterium sp.
5_U_42AFAA]
gi|365739760|gb|AEW83962.1| pseudouridylate synthase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365742001|gb|AEW81695.1| pseudouridylate synthase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744252|gb|AEW79449.1| pseudouridylate synthase [Propionibacterium acnes TypeIA2 P.acn33]
gi|407904378|gb|AFU41208.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes C1]
gi|456738509|gb|EMF63076.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes FZ1/2/0]
Length = 245
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 17 GLPRP-RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
G+PR RLF VGRLD T+GLI++TNDG+FA ++HPS K+ K Y+A ++G V+ + +
Sbjct: 96 GVPRGIRLFHVGRLDTETSGLILLTNDGEFANRMTHPSYKVLKTYLADVEGRVDDKVIRR 155
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+S+G +E PD V L+ Q + + +HEGRN VR ++ + + L R
Sbjct: 156 LSKGLTLEDGPVKPDAVRLV--QAGEEHSLVEVSLHEGRNRIVRRIMDSVAHPVRRLSRT 213
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
IG RL LG G EL +L
Sbjct: 214 AIGPVRLKR-LGRGDMRELTHEEL 236
>gi|387787853|ref|YP_006252921.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae ST556]
gi|379137595|gb|AFC94386.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae ST556]
Length = 241
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL++VT++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLVTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|359779471|ref|ZP_09282698.1| RNA-binding S4 domain-containing protein [Pseudomonas
psychrotolerans L19]
gi|359372087|gb|EHK72651.1| RNA-binding S4 domain-containing protein [Pseudomonas
psychrotolerans L19]
Length = 353
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LP+P R VGRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V + L+
Sbjct: 112 LPKPKQGRWINVGRLDINTTGLLLFTTDGELANRLMHPSYQMDREYAVRVRGEVTEEMLL 171
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G DV + P+ D VV EGRN EVR L ++ GL + LK
Sbjct: 172 RLKNGVILEDGPARFTDVQQA--PEGDGFNHWFHCVVMEGRNREVRRLWESQGLVVSRLK 229
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q ++ ++
Sbjct: 230 RVRFGPVFMTSDLPVGRWREMTQGEIDIL 258
>gi|419421535|ref|ZP_13961763.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes PRP-38]
gi|422396806|ref|ZP_16476837.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL097PA1]
gi|327330001|gb|EGE71755.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL097PA1]
gi|379978026|gb|EIA11351.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes PRP-38]
Length = 245
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 17 GLPRP-RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
G+PR RLF VGRLD T+GLI++TNDG+FA ++HPS K+ K Y+A ++G V+ + +
Sbjct: 96 GVPRGIRLFHVGRLDTETSGLILLTNDGEFANRMTHPSYKVLKTYLADVEGRVDDKVIHR 155
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+S+G +E PD V L+ Q + + +HEGRN VR ++ + + L R
Sbjct: 156 LSKGLTLEDGPVKPDAVRLV--QAGEEHSLVEVSLHEGRNRIVRRIMDSVAHPVRRLSRT 213
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
IG RL LG G EL +L
Sbjct: 214 AIGPVRLKR-LGRGDMRELTHEEL 236
>gi|152997397|ref|YP_001342232.1| RNA-binding S4 domain-containing protein [Marinomonas sp. MWYL1]
gi|150838321|gb|ABR72297.1| RNA-binding S4 domain protein [Marinomonas sp. MWYL1]
Length = 300
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R VGRLD+ T+GL++ T DG+ A + HPS+++ +EY+ + G V +L A
Sbjct: 93 PKLRGERWIAVGRLDINTSGLLLFTTDGELANRLMHPSTEIDREYLVRVMGEVTDENLAA 152
Query: 76 ISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ +G ++ +G D+V+ I R + + EGRN EVR L ++ G+K+ LKR
Sbjct: 153 LKKGVILDDGIAKFTDIVD--GGGEGINRW-FYVCLMEGRNREVRRLWESQGVKVNRLKR 209
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDL 159
+R G LPS +G VE++++D+
Sbjct: 210 VRFGPVFLPSKAKVGRWVEMEETDV 234
>gi|450143695|ref|ZP_21873572.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 1ID3]
gi|449151689|gb|EMB55415.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
mutans 1ID3]
Length = 240
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+I+TNDGDF + HP ++ K Y+A + G +K +L + +G
Sbjct: 91 KERIYPVGRLDWDTSGLLILTNDGDFTDKMLHPRHEIDKVYVARVKGLASKDNLRPLIKG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+G P ++ + R + + +HEGRNH+V+++ + GL + L R R G
Sbjct: 151 IVIDGKKTQPARYRIVKTDREKNRSVVELTIHEGRNHQVKKMFEAVGLMVDKLSRTRFGT 210
Query: 140 FRL 142
L
Sbjct: 211 LDL 213
>gi|50842867|ref|YP_056094.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes KPA171202]
gi|282853641|ref|ZP_06262978.1| pseudouridylate synthase [Propionibacterium acnes J139]
gi|335050747|ref|ZP_08543699.1| pseudouridylate synthase [Propionibacterium sp. 409-HC1]
gi|335053730|ref|ZP_08546561.1| pseudouridylate synthase [Propionibacterium sp. 434-HC2]
gi|342212479|ref|ZP_08705204.1| pseudouridylate synthase [Propionibacterium sp. CC003-HC2]
gi|386071104|ref|YP_005986000.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes ATCC 11828]
gi|387503763|ref|YP_005944992.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes 6609]
gi|422390276|ref|ZP_16470371.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL103PA1]
gi|422456965|ref|ZP_16533627.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
gi|422465283|ref|ZP_16541890.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
gi|422465606|ref|ZP_16542199.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
gi|422468067|ref|ZP_16544606.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
gi|422495398|ref|ZP_16571685.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
gi|422564366|ref|ZP_16640017.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
gi|422575541|ref|ZP_16651079.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
gi|50840469|gb|AAT83136.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes KPA171202]
gi|282583094|gb|EFB88474.1| pseudouridylate synthase [Propionibacterium acnes J139]
gi|313813285|gb|EFS50999.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
gi|314923703|gb|EFS87534.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
gi|314967055|gb|EFT11154.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
gi|314983150|gb|EFT27242.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
gi|315092372|gb|EFT64348.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
gi|315092741|gb|EFT64717.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
gi|315105956|gb|EFT77932.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
gi|327327189|gb|EGE68965.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes HL103PA1]
gi|333766399|gb|EGL43705.1| pseudouridylate synthase [Propionibacterium sp. 434-HC2]
gi|333769020|gb|EGL46174.1| pseudouridylate synthase [Propionibacterium sp. 409-HC1]
gi|335277808|gb|AEH29713.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes 6609]
gi|340768023|gb|EGR90548.1| pseudouridylate synthase [Propionibacterium sp. CC003-HC2]
gi|353455470|gb|AER05989.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
acnes ATCC 11828]
Length = 245
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 17 GLPRP-RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
G+PR RLF VGRLD T+GLI++TNDG+FA ++HPS K+ K Y+A ++G V+ + +
Sbjct: 96 GVPRGIRLFHVGRLDTETSGLILLTNDGEFANRMTHPSYKVLKTYLADVEGRVDDKVIHR 155
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+S+G +E PD V L+ Q + + +HEGRN VR ++ + + L R
Sbjct: 156 LSKGLTLEDGPVKPDAVRLV--QAGEEHSLVEVSLHEGRNRIVRRIMDSVAHPVRRLSRT 213
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
IG RL LG G EL +L
Sbjct: 214 AIGPVRLKR-LGRGDMRELTHEEL 236
>gi|15902641|ref|NP_358191.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae R6]
gi|116516226|ref|YP_816091.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae D39]
gi|421265715|ref|ZP_15716598.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR27]
gi|15458178|gb|AAK99401.1| Ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae R6]
gi|116076802|gb|ABJ54522.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae D39]
gi|395868451|gb|EJG79568.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR27]
Length = 241
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|417931956|ref|ZP_12575321.1| pseudouridylate synthase [Propionibacterium acnes SK182B-JCVI]
gi|340775899|gb|EGR97952.1| pseudouridylate synthase [Propionibacterium acnes SK182B-JCVI]
Length = 245
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 17 GLPRP-RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
G+PR RLF VGRLD T+GLI++TNDG+FA ++HPS K+ K Y+A ++G V+ + +
Sbjct: 96 GVPRGIRLFHVGRLDTETSGLILLTNDGEFANRMAHPSYKVLKTYLADVEGRVDDKVIHR 155
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+S+G +E PD V L+ Q + + +HEGRN VR ++ + + L R
Sbjct: 156 LSKGLTLEDGPVKPDAVRLV--QAGDEHSLVEVSLHEGRNRIVRRIMDSVAHPVRRLSRT 213
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
IG RL LG G EL +L
Sbjct: 214 AIGPVRLKR-LGRGDMRELTHEEL 236
>gi|402838189|ref|ZP_10886701.1| pseudouridylate synthase [Eubacteriaceae bacterium OBRC8]
gi|402273693|gb|EJU22888.1| pseudouridylate synthase [Eubacteriaceae bacterium OBRC8]
Length = 232
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
++ VGRLD ++GLI+VTNDGD A ++HP S + K YI T++G +++ + EG ++
Sbjct: 95 VYPVGRLDYDSSGLILVTNDGDIANKLTHPRSHISKTYIVTLNGRLSENQMKQFREGILL 154
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G P + L D R+V++EGRN ++R ++ G ++ LKR+ IG ++
Sbjct: 155 DGKKTLPAEISLY----DFSENSYRVVLYEGRNRQIRNMISALGREVKELKRISIGKIKI 210
>gi|302871660|ref|YP_003840296.1| pseudouridine synthase [Caldicellulosiruptor obsidiansis OB47]
gi|302574519|gb|ADL42310.1| pseudouridine synthase [Caldicellulosiruptor obsidiansis OB47]
Length = 236
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGLI++TNDG+FA V+HP ++K YIA I G +K + +G +
Sbjct: 96 RVFPVGRLDFDTTGLILLTNDGEFAYKVTHPKHDIEKTYIALIKGIPSKEEIERFEKGLL 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + I +HEGRN ++R++ G K+ LKR+ IG +
Sbjct: 156 IDGKMTAPAKFKVLKQIN--GNAMVEIKIHEGRNRQIRKMCDMIGHKVLKLKRIAIGKLQ 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|418324908|ref|ZP_12936127.1| pseudouridine synthase B, ribosomal large subunit [Staphylococcus
pettenkoferi VCU012]
gi|365223571|gb|EHM64855.1| pseudouridine synthase B, ribosomal large subunit [Staphylococcus
pettenkoferi VCU012]
Length = 246
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 79/137 (57%), Gaps = 8/137 (5%)
Query: 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYI 61
++ DY K + R++ VGRLD T+GL+I+TNDGDF ++HPS K+ K+Y+
Sbjct: 86 TVVTDYFKDIE--------TRIYPVGRLDYDTSGLLILTNDGDFTNLITHPSYKIPKKYV 137
Query: 62 ATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVREL 121
A ++G + + + A+ +G ++ P V++ + I +HEGRN +VR +
Sbjct: 138 AKLNGYLMREEVKALEKGIQLDDGWTQPAQVKIKRQDKQKETTLVEITIHEGRNRQVRRM 197
Query: 122 VKNAGLKLYSLKRLRIG 138
++ G K+ L+R+++G
Sbjct: 198 FEHLGYKVNKLQRIQVG 214
>gi|418148127|ref|ZP_12784892.1| hypothetical protein SPAR34_0615 [Streptococcus pneumoniae GA13856]
gi|353812802|gb|EHD93035.1| hypothetical protein SPAR34_0615 [Streptococcus pneumoniae GA13856]
Length = 241
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVQVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ +LKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTNLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYHPLNQKELQII 233
>gi|343520125|ref|ZP_08757094.1| pseudouridylate synthase [Parvimonas sp. oral taxon 393 str. F0440]
gi|343397083|gb|EGV09617.1| pseudouridylate synthase [Parvimonas sp. oral taxon 393 str. F0440]
Length = 230
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 5/143 (3%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD + GL+++TNDGD A ++HPS ++KEYI +D + + L +S G
Sbjct: 90 KERIYPVGRLDKDSFGLLLLTNDGDLAFKLTHPSHNVEKEYIVKVDKTLKESDLKKLSSG 149
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++EG E+ + +I +++ + EGRN ++R++ K G + SL+R+ G
Sbjct: 150 IMLEGRFTREARFEIFDFKNNI----VKVFLKEGRNRQIRKMFKTLGYNVISLERVAFGK 205
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL + +++ +
Sbjct: 206 IKLGK-LKLGSYRELNKEEIEYL 227
>gi|347521644|ref|YP_004779215.1| pseudouridine synthase [Lactococcus garvieae ATCC 49156]
gi|385832971|ref|YP_005870746.1| pseudouridine synthase [Lactococcus garvieae Lg2]
gi|343180212|dbj|BAK58551.1| pseudouridine synthase [Lactococcus garvieae ATCC 49156]
gi|343182124|dbj|BAK60462.1| pseudouridine synthase [Lactococcus garvieae Lg2]
Length = 238
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+F ++HP ++K YIA ++G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGLLLLTNDGEFTNLMTHPRHGVEKVYIAKVEGQANKENLRPLTLG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G +P E++ + + +HEG+NH+V+++ GL + L R++ G
Sbjct: 151 MTIDGKKVSPARYEIMKQDKAKNSSLVSLTIHEGQNHQVKKMFAAVGLPVQKLSRIQYGP 210
Query: 140 FRL 142
L
Sbjct: 211 LSL 213
>gi|312127407|ref|YP_003992281.1| pseudouridine synthase [Caldicellulosiruptor hydrothermalis 108]
gi|311777426|gb|ADQ06912.1| pseudouridine synthase [Caldicellulosiruptor hydrothermalis 108]
Length = 240
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGLI++TNDG+FA V+HP ++K YIA I G +K + +G +
Sbjct: 100 RVFPVGRLDFDTTGLILLTNDGEFAYKVTHPKHDIEKTYIALIKGIPSKEEIERFEKGLL 159
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + I +HEGRN ++R++ G K+ LKR+ IG +
Sbjct: 160 IDGKMTAPAKFKILKLIN--GNALVEIKIHEGRNRQIRKMCDQIGHKVLKLKRVAIGKLQ 217
Query: 142 L 142
L
Sbjct: 218 L 218
>gi|339498168|ref|ZP_08659144.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 253
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG +++TNDG A + HP S++ K Y+A + G + L + +G V
Sbjct: 103 RVYPVGRLDYDTTGALLLTNDGQVANQLMHPKSQVNKTYMAKVKGIATEAQLAPLKKGVV 162
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + D +R+ +HEGRNH+V+ ++ GL + LKR + F
Sbjct: 163 IKGRKTAPARVAITRVDHDKKTSMVRLTIHEGRNHQVKNMLAKVGLPVEKLKREQYAFFD 222
Query: 142 L 142
L
Sbjct: 223 L 223
>gi|445381056|ref|ZP_21427066.1| hypothetical protein IQ5_06942 [Streptococcus thermophilus MTCC
5460]
gi|445394180|ref|ZP_21428800.1| hypothetical protein IQ7_07020 [Streptococcus thermophilus MTCC
5461]
gi|444749024|gb|ELW73963.1| hypothetical protein IQ7_07020 [Streptococcus thermophilus MTCC
5461]
gi|444749103|gb|ELW74033.1| hypothetical protein IQ5_06942 [Streptococcus thermophilus MTCC
5460]
Length = 243
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 81/138 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A + G +++ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVAGIMDEEDILAFEKGIK 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ + ++I + EG+ H+V+ +V G ++ L+RL++G
Sbjct: 155 LKDHTCQPAKLEIVSVDRNASTSLVQITIAEGKFHQVKRMVAACGKEVADLQRLKMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDL 159
LP+DL +G L Q +L
Sbjct: 215 LPNDLELGAWRRLTQEEL 232
>gi|422845406|ref|ZP_16892116.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325684334|gb|EGD26503.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 241
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 7/155 (4%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D LK D+ P VGRLD TTGL+++TNDG A + P + K Y A +
Sbjct: 85 DLLKDQDRYQKIAP------VGRLDKDTTGLLLLTNDGQLAHQLLAPEYHVPKTYYALLA 138
Query: 66 GAVNKRHLIAISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKN 124
G ++ AI+ G T+ +GT P +++L D + I I + EG+ H+V+ + +
Sbjct: 139 GVADEETAKAIAAGLTLKDGTELKPGQLKILRQDKDQEQSEIEITITEGKYHQVKRMFAS 198
Query: 125 AGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
G+K+ LKRL +G LP+DL +G + L + ++
Sbjct: 199 QGMKVLKLKRLSMGPLTLPADLALGSYRPLTEEEM 233
>gi|309798849|ref|ZP_07693110.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
infantis SK1302]
gi|308117498|gb|EFO54913.1| ribosomal large subunit pseudouridine synthase B [Streptococcus
infantis SK1302]
Length = 199
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 67/104 (64%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDGDF + HP +++ K Y+A + G NK +L ++ G
Sbjct: 91 KERIYPVGRLDWDTSGVLILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVK 123
I+G P V E+L P R +++ +HEGRNH+V++ +K
Sbjct: 151 VEIDGKKTKPAVYEILKVDPVKNRSVVQLTIHEGRNHQVKKCLK 194
>gi|91200876|emb|CAJ73931.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 260
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RL+T+GRLD + GLII+TNDG+ + +SHP ++ K Y IDG ++ + A+ G
Sbjct: 94 KQRLYTIGRLDKQSEGLIIITNDGELSNKLSHPKYEVNKTYFIEIDGYLSNETITALQSG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ P V + + R +++ EG+N E+R ++ + G K+ +L+R++IG
Sbjct: 154 VWLAFGKTQP--VRIKKMHRSFKKSRFEMILCEGKNREIRRMLADHGHKVRTLRRIKIGS 211
Query: 140 FRLPSDLGIGMHVELKQSDLK 160
P DL +G + +L + ++K
Sbjct: 212 LCDP-DLKVGKYRKLTEQEIK 231
>gi|322373412|ref|ZP_08047948.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
C150]
gi|321278454|gb|EFX55523.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
C150]
Length = 243
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A + G +++ + A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPRKHVDKIYQAKVAGVMDEADMQAFEKGIE 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E+L + +++ + EG+ H+V+ +V G ++ L+RL +G
Sbjct: 155 LKDHTCQPAKLEILSVDQAVKTSTVQVTIAEGKFHQVKRMVAACGKEVTDLQRLSMGSLV 214
Query: 142 LPSDLGIGMHVELKQSDL 159
LP DL IG L Q +L
Sbjct: 215 LPDDLEIGTWRRLTQEEL 232
>gi|381336769|ref|YP_005174544.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
mesenteroides subsp. mesenteroides J18]
gi|356644735|gb|AET30578.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
mesenteroides subsp. mesenteroides J18]
Length = 259
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG++++TNDG A + HP +K+ K Y+A ++G + L + G V
Sbjct: 109 RVYPVGRLDYDTTGVLLLTNDGVVANQLMHPKTKVDKTYVAKVEGIATEEKLAPLKRGVV 168
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V + +P +R+ +HEGRNH+V+ ++ GL + LKR + F
Sbjct: 169 LKGRKTAPARVSIERIEPTKRTSMVRLTIHEGRNHQVKNMLAKVGLPVQKLKREQYAFFD 228
Query: 142 L----PSDLGIGMHVE---LKQSDLKLMGWK 165
+ P + VE LK D KL+ K
Sbjct: 229 VTGLQPGEYRKLTSVEIKRLKAQDYKLLRRK 259
>gi|418193330|ref|ZP_12829823.1| hypothetical protein SPAR119_0611 [Streptococcus pneumoniae
GA47439]
gi|353860053|gb|EHE40000.1| hypothetical protein SPAR119_0611 [Streptococcus pneumoniae
GA47439]
Length = 241
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ LKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTILKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|227431698|ref|ZP_03913728.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352522|gb|EEJ42718.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 224
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG++++TNDG A + HP +K+ K Y+A ++G + L + G V
Sbjct: 74 RVYPVGRLDYDTTGVLLLTNDGVVANQLMHPKTKVDKTYVAKVEGIATEEKLAPLKRGVV 133
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V + +P +R+ +HEGRNH+V+ ++ GL + LKR + F
Sbjct: 134 LKGRKTAPARVSIERIEPTKRTSMVRLTIHEGRNHQVKNMLAKVGLPVQKLKREQYAFFD 193
Query: 142 L----PSDLGIGMHVE---LKQSDLKLMGWK 165
+ P + VE LK D KL+ K
Sbjct: 194 VTGLQPGEYRKLTSVEIKRLKAQDYKLLRRK 224
>gi|326791171|ref|YP_004308992.1| pseudouridine synthase Rsu [Clostridium lentocellum DSM 5427]
gi|326541935|gb|ADZ83794.1| pseudouridine synthase Rsu [Clostridium lentocellum DSM 5427]
Length = 242
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD T GL+I+TNDG A + P + K Y A + G + + + +EG +
Sbjct: 101 VFPVGRLDKDTEGLLILTNDGKMAHGLLSPKRHVDKVYYARVAGKMTEEDIKMFAEGIAL 160
Query: 83 -EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+GT P +E++ + I + +HEG+ H+V+ +V+ G ++ LKR+++GG
Sbjct: 161 TDGTKYAPGKLEIIRSDEE---SEIYVTIHEGKFHQVKRMVQAVGKEVVYLKRIKMGGLE 217
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
LP DL +G + L + +L L+
Sbjct: 218 LPEDLSLGTYRTLTKEELDLL 238
>gi|444414610|ref|ZP_21210863.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0199]
gi|444281472|gb|ELU86789.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0199]
Length = 241
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ LKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTILKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|289425044|ref|ZP_06426821.1| pseudouridylate synthase [Propionibacterium acnes SK187]
gi|422438468|ref|ZP_16515312.1| hypothetical protein HMPREF9584_01968 [Propionibacterium acnes
HL092PA1]
gi|422493691|ref|ZP_16569991.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
gi|422516653|ref|ZP_16592762.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
gi|422523991|ref|ZP_16600000.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
gi|422531955|ref|ZP_16607901.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
gi|422545022|ref|ZP_16620852.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
gi|289154022|gb|EFD02710.1| pseudouridylate synthase [Propionibacterium acnes SK187]
gi|313792449|gb|EFS40542.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
gi|313801506|gb|EFS42755.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
gi|313838267|gb|EFS75981.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
gi|314963143|gb|EFT07243.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
gi|315078206|gb|EFT50249.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
gi|327453532|gb|EGF00187.1| hypothetical protein HMPREF9584_01968 [Propionibacterium acnes
HL092PA1]
Length = 245
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 17 GLPRP-RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
G+PR RLF VGRLD T+GLI++TNDG+FA ++HPS K+ K Y+A ++G V+ + +
Sbjct: 96 GVPRGIRLFHVGRLDTETSGLILLTNDGEFANRMTHPSYKVLKTYLADVEGRVDDKVIRR 155
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+S+G +E PD V L+ Q + + +HEGRN VR ++ + + L R
Sbjct: 156 LSKGLTLEDGPVKPDAVRLV--QAGEEHSLVEVSLHEGRNRIVRRIMDSVAHPVRRLSRT 213
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
IG RL LG G EL +L
Sbjct: 214 VIGPVRLKR-LGRGDMRELTHEEL 236
>gi|116618395|ref|YP_818766.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097242|gb|ABJ62393.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 249
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG++++TNDG A + HP +K+ K Y+A ++G + L + G V
Sbjct: 99 RVYPVGRLDYDTTGVLLLTNDGVVANQLMHPKTKVDKTYVAKVEGIATEEKLAPLKRGVV 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V + +P +R+ +HEGRNH+V+ ++ GL + LKR + F
Sbjct: 159 LKGRKTAPARVSIERIEPTKRTSMVRLTIHEGRNHQVKNMLAKVGLPVQKLKREQYAFFD 218
Query: 142 L----PSDLGIGMHVE---LKQSDLKLMGWK 165
+ P + VE LK D KL+ K
Sbjct: 219 VTGLQPGEYRKLTSVEIKRLKAQDYKLLRRK 249
>gi|255305403|ref|ZP_05349575.1| putative RNA pseudouridine synthase [Clostridium difficile ATCC
43255]
Length = 240
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG + V P + K Y A IDG V + + A EG V++
Sbjct: 101 FPVGRLDKDTEGLLVLTNDGKLSHRVLSPKKHVSKTYYAKIDGVVTEEDVEAFLEGVVLD 160
Query: 84 GTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T +P Q +I + I + +HEG+ H+V+ + ++ G K+ LKRL +G
Sbjct: 161 DGYKT------MPSQLNILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGN 214
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL ++KL+
Sbjct: 215 LKLDESLELGEYRELTDEEVKLI 237
>gi|406891180|gb|EKD36877.1| Pseudouridine synthase [uncultured bacterium]
Length = 241
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD+ T G +I+TNDG AQ + HPS + K Y A + G + L+++ +G +
Sbjct: 102 RLFPVGRLDLDTEGALILTNDGRLAQKIQHPSHETNKTYEALVRGTPDNGQLVSLQKGIL 161
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+EG +P V +L Q P + I +HEGR +V+++ + G + LKR G
Sbjct: 162 LEGKMTSPANVRILARQG--PNCLMEITIHEGRKRQVKKMFSHIGHPVLHLKRTAYGKLG 219
Query: 142 LPSDLGIGMHVELKQSDLK 160
L +L IG + L +DLK
Sbjct: 220 L-GNLPIGRYRRLNSADLK 237
>gi|375090459|ref|ZP_09736773.1| pseudouridine synthase [Facklamia languida CCUG 37842]
gi|374565220|gb|EHR36491.1| pseudouridine synthase [Facklamia languida CCUG 37842]
Length = 241
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 80/147 (54%)
Query: 12 DKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKR 71
D +P RP LF VGRLD+ TTGL+++TN G A++ P + K Y ATI G VN+
Sbjct: 85 DCLDPEDLRPDLFPVGRLDIDTTGLLLITNHGPLNHALTSPKKAIAKVYQATIQGIVNQE 144
Query: 72 HLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
+ +EG + P +E+L P+ + I++ + EG+ H+V+ + G+++
Sbjct: 145 MVEVFAEGIDLGDFTTQPAKLEILKVDPNQEQSAIQVTITEGKFHQVKRMFAACGVEVIR 204
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSD 158
L RL +G L S+L G + L S+
Sbjct: 205 LHRLSMGPLLLDSNLEAGSYRRLTASE 231
>gi|387784619|ref|YP_006070702.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
gi|338745501|emb|CCB95867.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
Length = 243
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 81/141 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A +DG +++ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVDGIMDQEDILAFEKGIE 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ ++I + EG+ H+V+ +V G ++ L+RL +G
Sbjct: 155 LKDHTCQPAKLEIISVDRATGTSLVQITIAEGKFHQVKRMVAACGKEVTDLQRLSMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
LP DL +G L + +L+ +
Sbjct: 215 LPDDLDLGAWRRLTEEELEAL 235
>gi|293365020|ref|ZP_06611737.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
oralis ATCC 35037]
gi|307702270|ref|ZP_07639230.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|291316470|gb|EFE56906.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
oralis ATCC 35037]
gi|307624283|gb|EFO03260.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 241
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 88 PDIQSDQLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGLLTPDHIQY 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
EG V ++GT C P +++L P R I + EG+ H+V+++ + G+K+ +LKR
Sbjct: 148 FKEGIVFLDGTTCKPAKLDILSASP--TESRASITISEGKFHQVKKMFLSVGVKVTTLKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L S+L G + L +L+++
Sbjct: 206 VQFGDFTLDSELAEGQYRPLNPEELEII 233
>gi|406667714|ref|ZP_11075468.1| Ribosomal large subunit pseudouridine synthase B [Bacillus
isronensis B3W22]
gi|405384490|gb|EKB43935.1| Ribosomal large subunit pseudouridine synthase B [Bacillus
isronensis B3W22]
Length = 247
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGL+++TNDG+F+ ++HP K+ K YIA + G K+ L+ + G
Sbjct: 95 RIFPVGRLDYDTTGLLLLTNDGEFSNLMTHPKFKIDKTYIARVKGIPTKQGLMKLQSGIK 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V + + + I +HEGRN +VR + + G + LKR R
Sbjct: 155 LEDGKTAPAKVSMTSFDENAGKAICEITIHEGRNRQVRRMFEAIGTPVVKLKRERFAFLD 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L + L G + +L + ++KL+
Sbjct: 215 L-TGLSPGEYRQLTKHEVKLL 234
>gi|326796234|ref|YP_004314054.1| pseudouridine synthase Rsu [Marinomonas mediterranea MMB-1]
gi|326546998|gb|ADZ92218.1| pseudouridine synthase Rsu [Marinomonas mediterranea MMB-1]
Length = 298
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 4/147 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLD+ T+GL++ T DG+ A + HPS+++ +EY+ + G V H+
Sbjct: 91 RLPKLRGERWIAVGRLDINTSGLLLFTTDGELANRLMHPSTEIDREYLVRVMGQVTDEHI 150
Query: 74 IAISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ +G ++ +G DVV+ + + + EGRN EVR L ++ GLK+ L
Sbjct: 151 ATLKKGVLLDDGMASFSDVVD---GGGEGINHWFYVCLMEGRNREVRRLWESQGLKVNRL 207
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDL 159
KR+R G LPS +G VE++++++
Sbjct: 208 KRVRFGPVFLPSKAKVGRWVEMEEAEV 234
>gi|295398585|ref|ZP_06808617.1| ribosomal large subunit pseudouridine synthase B [Aerococcus
viridans ATCC 11563]
gi|294973186|gb|EFG48981.1| ribosomal large subunit pseudouridine synthase B [Aerococcus
viridans ATCC 11563]
Length = 240
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PG+ + R++ VGRLD T+GL+++TNDG+FA + HP ++ K Y+A ++G +
Sbjct: 89 PGIEQ-RIYPVGRLDYNTSGLLLLTNDGEFANTLMHPRYEINKVYVAKVEGVITGEERKQ 147
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ G I+G P ++L D I +V+HEGRN +VR++++ G + LKR
Sbjct: 148 LERGVEIDGVKTAPAQAKILSVDKDKKTTIIELVIHEGRNRQVRKMLEAVGHPVTKLKRE 207
Query: 136 RIG 138
R G
Sbjct: 208 RYG 210
>gi|399515903|ref|ZP_10757536.1| Ribosomal small subunit pseudouridine synthase A ;RsuA-16S rRNA
pseudouridylate 516 synthase] [Leuconostoc
pseudomesenteroides 4882]
gi|398649337|emb|CCJ65563.1| Ribosomal small subunit pseudouridine synthase A ;RsuA-16S rRNA
pseudouridylate 516 synthase] [Leuconostoc
pseudomesenteroides 4882]
Length = 249
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG +++TNDG A + HP S++ K Y+A + G + L + +G V
Sbjct: 99 RVYPVGRLDYDTTGALLLTNDGQVANQLMHPKSQVNKTYMAKVKGIATEAQLAPLRKGVV 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + D +R+ +HEGRNH+V+ ++ GL + LKR + F
Sbjct: 159 IKGRKTAPARVAITRVDHDKKTSMVRLTIHEGRNHQVKNMLAKVGLPVEKLKREQYAFFD 218
Query: 142 L 142
L
Sbjct: 219 L 219
>gi|418184460|ref|ZP_12821008.1| hypothetical protein SPAR91_0649 [Streptococcus pneumoniae GA47283]
gi|353852058|gb|EHE32048.1| hypothetical protein SPAR91_0649 [Streptococcus pneumoniae GA47283]
Length = 225
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 78 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 137
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 138 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 195
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 196 TLNPDLAEGNYRPLNQKELQII 217
>gi|94263642|ref|ZP_01287451.1| Pseudouridine synthase, Rsu [delta proteobacterium MLMS-1]
gi|93455947|gb|EAT06102.1| Pseudouridine synthase, Rsu [delta proteobacterium MLMS-1]
Length = 240
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
+ PGL RLF VGRLD T G +++TNDGD A + HPS ++++ Y AT++G + L
Sbjct: 93 KEPGL---RLFPVGRLDFDTEGALLLTNDGDLAHRLLHPSFEIKRTYQATVEGTPGAQAL 149
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
A+ +G +EG P +V+ L + + + + I++HEGR +VR+++ G + LK
Sbjct: 150 RALRQGIELEGRRTHPAMVKTLRRRGE--QTVLEIIIHEGRKRQVRKMLAAVGHPVLHLK 207
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+ G RL L +G + L D+ L+
Sbjct: 208 RVAYGDLRL-GRLPLGSYRRLNHEDIALL 235
>gi|170288482|ref|YP_001738720.1| pseudouridine synthase [Thermotoga sp. RQ2]
gi|170175985|gb|ACB09037.1| pseudouridine synthase [Thermotoga sp. RQ2]
Length = 239
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
P +F VGRLD GL+I+TNDGDFA V P ++KEYI ++G V + + +
Sbjct: 88 PLKGIFPVGRLDKDAEGLLIITNDGDFAHRVISPKWSVEKEYIVKVEGEVTEDKIEKLKN 147
Query: 79 G-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
G T+ +G VE L ++IV+ EG+ H+++ + GLK LKR RI
Sbjct: 148 GVTLRDGFFAKAKCVEKLSNDT------LKIVITEGKYHQIKRMTAAVGLKTVHLKRTRI 201
Query: 138 GGFRLPSDLGIGMHVELKQSDLK 160
GG LP D+ G + L + ++K
Sbjct: 202 GGLVLPDDMKPGEYRFLSEEEVK 224
>gi|297570484|ref|YP_003691828.1| pseudouridine synthase [Desulfurivibrio alkaliphilus AHT2]
gi|296926399|gb|ADH87209.1| pseudouridine synthase [Desulfurivibrio alkaliphilus AHT2]
Length = 240
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PGL RLF VGRLD+ T G +++TNDG+ AQ + HPS ++ + Y AT+ G N+ L
Sbjct: 94 PGL---RLFPVGRLDLDTEGALLLTNDGELAQNILHPSRQINRTYHATVKGRPNREALQQ 150
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ G ++EG P + L + + + +++HEGR +VR++ + LKR+
Sbjct: 151 LRRGIMLEGRRTWPARIREL--RRNQESTTLEVIIHEGRKRQVRKMFAAINHPVLQLKRV 208
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLKLM 162
GG RL S L G + L DL+L+
Sbjct: 209 AYGGLRLGS-LPTGRYRRLSPEDLQLL 234
>gi|444391674|ref|ZP_21189486.1| pseudouridylate synthase, partial [Streptococcus pneumoniae
PCS81218]
gi|444265056|gb|ELU71087.1| pseudouridylate synthase, partial [Streptococcus pneumoniae
PCS81218]
Length = 229
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSD 158
L DL G + L Q +
Sbjct: 212 TLNPDLAEGNYRPLNQKE 229
>gi|168487228|ref|ZP_02711736.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC1087-00]
gi|419510146|ref|ZP_14049790.1| pseudouridine synthase family protein [Streptococcus pneumoniae
NP141]
gi|419529876|ref|ZP_14069407.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40028]
gi|421212695|ref|ZP_15669657.1| hypothetical protein AMCSP12_000573 [Streptococcus pneumoniae
2070108]
gi|421214882|ref|ZP_15671813.1| hypothetical protein AMCSP04_000597 [Streptococcus pneumoniae
2070109]
gi|421289318|ref|ZP_15740070.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|421304638|ref|ZP_15755294.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
gi|183569856|gb|EDT90384.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC1087-00]
gi|379574616|gb|EHZ39554.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40028]
gi|379633339|gb|EHZ97908.1| pseudouridine synthase family protein [Streptococcus pneumoniae
NP141]
gi|395581102|gb|EJG41575.1| hypothetical protein AMCSP12_000573 [Streptococcus pneumoniae
2070108]
gi|395582441|gb|EJG42903.1| hypothetical protein AMCSP04_000597 [Streptococcus pneumoniae
2070109]
gi|395890578|gb|EJH01584.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|395905300|gb|EJH16205.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
Length = 241
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|225858508|ref|YP_002740018.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae 70585]
gi|225721992|gb|ACO17846.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae 70585]
Length = 241
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVQVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|338999984|ref|ZP_08638607.1| ribosomal large subunit pseudouridine synthase B [Halomonas sp.
TD01]
gi|338763040|gb|EGP18049.1| ribosomal large subunit pseudouridine synthase B [Halomonas sp.
TD01]
Length = 289
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R +GRLD+ T+GL++ T DG+ A + HPS+++++EY + G V + H
Sbjct: 101 ERLPRLKGERWIAIGRLDINTSGLLLFTTDGELANRLMHPSTQVEREYAVRVMGEVKREH 160
Query: 73 LIAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
+IA+ +G ++E G DV E + +V+ EGRN EVR L ++ GL +
Sbjct: 161 IIAMVDGVMLEDGPARFTDVQEFGGEGINTW---FHVVILEGRNREVRRLWESQGLTVSR 217
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDL 159
LKR+R G L G VEL Q ++
Sbjct: 218 LKRVRYGNIFLDKRAKAGEWVELSQDEV 245
>gi|335047545|ref|ZP_08540566.1| pseudouridylate synthase [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761353|gb|EGL38908.1| pseudouridylate synthase [Parvimonas sp. oral taxon 110 str. F0139]
Length = 230
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
+ R++ VGRLD + GL+++TNDGD A ++HPS ++KEYI +D + + L +S
Sbjct: 89 SKERIYPVGRLDKDSFGLLLLTNDGDLAFKLTHPSHNVEKEYIVKVDKTLKESDLKKLSS 148
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
G ++EG E+ + +I +++ + EGRN ++R++ K G + SL+R+ G
Sbjct: 149 GIMLEGKITRKARFEIFDFKNNI----VKVFLKEGRNRQIRKMFKTLGYNVISLERIAFG 204
Query: 139 GFRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL + +++ +
Sbjct: 205 KIKLGK-LKLGNYRELSKEEIEYL 227
>gi|322516330|ref|ZP_08069256.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
vestibularis ATCC 49124]
gi|322125168|gb|EFX96557.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
vestibularis ATCC 49124]
Length = 243
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 82/141 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD+ T GL+++TN+GD A A+ P + K Y A + G +++ ++A +G
Sbjct: 95 RVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVAGVMDEEDILAFEKGIK 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ + ++I + EG+ H+V+ +V G ++ L+RL +G
Sbjct: 155 LKDHTCQPAKLEIVSVDRNESTSWVQITIAEGKFHQVKRMVAACGKEVTELQRLSMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
LP+DL +G L + +L+ +
Sbjct: 215 LPNDLELGTWRRLTEEELEAL 235
>gi|168492245|ref|ZP_02716388.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC0288-04]
gi|183573539|gb|EDT94067.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC0288-04]
Length = 241
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|312135342|ref|YP_004002680.1| pseudouridine synthase [Caldicellulosiruptor owensensis OL]
gi|311775393|gb|ADQ04880.1| pseudouridine synthase [Caldicellulosiruptor owensensis OL]
Length = 236
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGLI++TNDG+FA V+HP ++K YIA + G +K+ + G +
Sbjct: 96 RVFPVGRLDFDTTGLILLTNDGEFAYKVTHPKHDIEKTYIALVKGIPSKKEIEMFERGLL 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + I +HEGRN ++R++ G K+ LKR+ IG +
Sbjct: 156 IDGKMTAPAKFKILKLIN--GNALVEIKIHEGRNRQIRKMCDMIGHKVLKLKRIAIGKLQ 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|169834407|ref|YP_001694153.1| ribosomal small subunit pseudouridine synthase A, [Streptococcus
pneumoniae Hungary19A-6]
gi|168996909|gb|ACA37521.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae Hungary19A-6]
Length = 241
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|94267153|ref|ZP_01290785.1| Pseudouridine synthase, Rsu [delta proteobacterium MLMS-1]
gi|93452121|gb|EAT02795.1| Pseudouridine synthase, Rsu [delta proteobacterium MLMS-1]
Length = 240
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
+ PGL RLF VGRLD T G +++TNDGD A + HPS ++++ Y AT++G + L
Sbjct: 93 KEPGL---RLFPVGRLDFDTEGALLLTNDGDLAHRLLHPSFEIKRTYQATVEGTPGAQAL 149
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
A+ +G +EG P +V+ L + + + + I++HEGR +VR+++ G + LK
Sbjct: 150 RALRQGIELEGRRTHPAMVKTLRRRGE--QTVLEIIIHEGRKRQVRKMLAAVGHPVLHLK 207
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+ G RL L +G + L D+ L+
Sbjct: 208 RVAYGDLRL-GRLPLGSYRRLNHEDIALL 235
>gi|405760869|ref|YP_006701465.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SPNA45]
gi|404277758|emb|CCM08305.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae SPNA45]
Length = 241
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|418145896|ref|ZP_12782681.1| hypothetical protein SPAR32_0666 [Streptococcus pneumoniae GA13637]
gi|421217173|ref|ZP_15674074.1| hypothetical protein AMCSP13_000807 [Streptococcus pneumoniae
2070335]
gi|353815834|gb|EHD96047.1| hypothetical protein SPAR32_0666 [Streptococcus pneumoniae GA13637]
gi|395584659|gb|EJG45051.1| hypothetical protein AMCSP13_000807 [Streptococcus pneumoniae
2070335]
Length = 241
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|220929165|ref|YP_002506074.1| pseudouridine synthase [Clostridium cellulolyticum H10]
gi|219999493|gb|ACL76094.1| pseudouridine synthase [Clostridium cellulolyticum H10]
Length = 235
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GLI++TNDGDF ++HP ++ K Y A I G K + + G
Sbjct: 97 RLYPVGRLDYDTSGLILLTNDGDFTYRLTHPKHEINKVYEAVISGFPEKNEIKSFESGLK 156
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IE +P +L Q +RI +HEG+N +VR++ + G K+ +LKR++IG
Sbjct: 157 IENYQTSPAEFVVLEKQG--INTLVRITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIA 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L +L +G L +LK++
Sbjct: 215 L-DNLPVGKWRHLSLRELKML 234
>gi|374295870|ref|YP_005046061.1| pseudouridine synthase family protein [Clostridium clariflavum DSM
19732]
gi|359825364|gb|AEV68137.1| pseudouridine synthase family protein [Clostridium clariflavum DSM
19732]
Length = 237
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F VGRLD TTGL+I+TNDGDFA ++HP K++K Y+ATI G + +G
Sbjct: 95 KERVFPVGRLDYETTGLLILTNDGDFAYRMTHPKHKVEKTYLATIAGIPTGEEISRFEKG 154
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IE P +++ I +HEGRN +VR++ + G + SLKR+ IG
Sbjct: 155 LRIEDYITAPAKFKIVAKNKQ--NCVAEITIHEGRNRQVRKMCEAIGHPVLSLKRISIGK 212
Query: 140 FRLPSDLGIGMHVELKQSDLK 160
+ +L G EL Q ++K
Sbjct: 213 LSI-GNLAEGDWRELTQDEVK 232
>gi|55821481|ref|YP_139923.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
thermophilus LMG 18311]
gi|386087107|ref|YP_006002981.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
gi|387910206|ref|YP_006340512.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
thermophilus MN-ZLW-002]
gi|55737466|gb|AAV61108.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
thermophilus LMG 18311]
gi|312278820|gb|ADQ63477.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
gi|387575141|gb|AFJ83847.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
thermophilus MN-ZLW-002]
Length = 243
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 81/138 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A + G +++ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVAGIMDEEDILAFEKGIK 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ + ++I + EG+ H+V+ +V G ++ L+RL++G
Sbjct: 155 LKDHTCQPAKLEIVSVDRNASTSLVQITIAEGKFHQVKRMVAACGKEVADLQRLKMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDL 159
LP+DL +G L Q +L
Sbjct: 215 LPNDLELGDWRRLTQEEL 232
>gi|225018711|ref|ZP_03707903.1| hypothetical protein CLOSTMETH_02661 [Clostridium methylpentosum
DSM 5476]
gi|224948439|gb|EEG29648.1| hypothetical protein CLOSTMETH_02661 [Clostridium methylpentosum
DSM 5476]
Length = 255
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLDV + GL++ TNDG A + HPS + K Y T+ + ++EG V
Sbjct: 108 RLYPVGRLDVNSEGLLLFTNDGRLANDIMHPSRHVTKTYRVTVRPDITDEQAARLAEGVV 167
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V +L +P+ R + +V+ EGRN ++R++++ GL++ LKR +G +
Sbjct: 168 IDGRKTAPAQVHVLTKEPN--RVVMEVVIREGRNRQIRKMMEAVGLEVARLKRTSLGPIK 225
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G H +L +LK +
Sbjct: 226 LGM-LKPGAHRDLTAEELKAL 245
>gi|419706552|ref|ZP_14234071.1| Pseudouridine synthase [Streptococcus salivarius PS4]
gi|383283723|gb|EIC81668.1| Pseudouridine synthase [Streptococcus salivarius PS4]
Length = 243
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 77/138 (55%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A + G +++ + A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPRKHVDKIYQAKVAGVMDEADMQAFEKGIE 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E+L ++I + EG+ H+V+ +V G ++ L+RL +G
Sbjct: 155 LKDHTCQPAKLEILSVDQAAKTSTVQITIAEGKFHQVKRMVAACGKEVTDLQRLSMGSLV 214
Query: 142 LPSDLGIGMHVELKQSDL 159
LP DL IG L Q +L
Sbjct: 215 LPDDLEIGTWRRLTQEEL 232
>gi|222529534|ref|YP_002573416.1| pseudouridine synthase [Caldicellulosiruptor bescii DSM 6725]
gi|222456381|gb|ACM60643.1| pseudouridine synthase [Caldicellulosiruptor bescii DSM 6725]
Length = 230
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGLII+TNDG+FA V+HP ++K YI I G +K + +G +
Sbjct: 90 RVFPVGRLDFDTTGLIILTNDGEFAYKVTHPKHDIEKTYIVLIKGIPSKEEIERFEKGLL 149
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + I +HEGRN ++R++ G K+ LKR+ IG +
Sbjct: 150 IDGKMTAPAKFKILKLIN--GNALVEIKIHEGRNRQIRKMCDQIGHKVLKLKRVAIGKLQ 207
Query: 142 L 142
L
Sbjct: 208 L 208
>gi|421487698|ref|ZP_15935096.1| pseudouridylate synthase [Streptococcus oralis SK304]
gi|400369660|gb|EJP22657.1| pseudouridylate synthase [Streptococcus oralis SK304]
Length = 241
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +
Sbjct: 88 PDIQSDQLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQHHVDKSYQVVVNGLLTPDHIQS 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
EG V ++GT C P +E+L P I + EG+ H+V+++ + G+K+ +LKR
Sbjct: 148 FKEGIVFLDGTTCKPAQLEILDASP--TESHASITISEGKFHQVKKMFLSVGVKVTALKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L S+L G + L +L+++
Sbjct: 206 VQFGDFTLNSELSEGQYRPLNPEELEII 233
>gi|296449151|ref|ZP_06890938.1| ribosomal small subunit pseudouridine synthase A [Clostridium
difficile NAP08]
gi|296880870|ref|ZP_06904818.1| ribosomal small subunit pseudouridine synthase A [Clostridium
difficile NAP07]
gi|296261970|gb|EFH08778.1| ribosomal small subunit pseudouridine synthase A [Clostridium
difficile NAP08]
gi|296428157|gb|EFH14056.1| ribosomal small subunit pseudouridine synthase A [Clostridium
difficile NAP07]
Length = 240
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG + V P + K Y A IDG V + + A EG V++
Sbjct: 101 FPVGRLDKDTEGLLVLTNDGKLSHRVLSPKKHVPKTYYAKIDGVVTEEDVEAFLEGVVLD 160
Query: 84 GTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T +P Q +I + I + +HEG+ H+V+ + ++ G K+ LKRL +G
Sbjct: 161 DGYKT------MPSQLNILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGN 214
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL ++KL+
Sbjct: 215 LKLDESLELGEYRELTDEEIKLI 237
>gi|87119433|ref|ZP_01075330.1| ribosomal large subunit pseudouridine synthase B [Marinomonas sp.
MED121]
gi|86164909|gb|EAQ66177.1| ribosomal large subunit pseudouridine synthase B [Marinomonas sp.
MED121]
Length = 296
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 4/145 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R VGRLD+ T+GL++ T DG+ A + HPS+++ +EY+ + G +N H+
Sbjct: 93 PKLRGERWIAVGRLDINTSGLLLFTTDGELANKLMHPSTEIDREYLVRVMGEINDDHIET 152
Query: 76 ISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ +G ++ +G D+V+ I R + V EGRN EVR L ++ G+K+ LKR
Sbjct: 153 LKKGVLLDDGMANFTDIVD--GGGEGINRW-FYVCVMEGRNREVRRLWESQGVKVNRLKR 209
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDL 159
+R G LPS +G VE+ ++++
Sbjct: 210 VRFGPVFLPSKAKMGRSVEMDEAEV 234
>gi|126697974|ref|YP_001086871.1| ribosomal small subunit pseudouridine synthase A [Clostridium
difficile 630]
gi|115249411|emb|CAJ67226.1| Ribosomal small subunit pseudouridine synthase A [Clostridium
difficile 630]
Length = 240
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG + V P + K Y A IDG V + + A EG V++
Sbjct: 101 FPVGRLDKDTEGLLVLTNDGKLSHRVLSPKKHVPKTYYAKIDGVVTEEDVEAFLEGVVLD 160
Query: 84 GTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T +P Q +I + I + +HEG+ H+V+ + ++ G K+ LKRL +G
Sbjct: 161 DRYKT------MPSQLNILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGN 214
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL ++KL+
Sbjct: 215 LKLDESLELGEYRELTDEEVKLI 237
>gi|395203785|ref|ZP_10394878.1| pseudouridylate synthase [Propionibacterium humerusii P08]
gi|422439190|ref|ZP_16516013.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
gi|422470677|ref|ZP_16547177.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
gi|422574496|ref|ZP_16650050.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
gi|313837519|gb|EFS75233.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
gi|314927273|gb|EFS91104.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
gi|314972725|gb|EFT16822.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
gi|328907871|gb|EGG27634.1| pseudouridylate synthase [Propionibacterium humerusii P08]
Length = 245
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 17 GLPRP-RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
G+PR RLF VGRLD T+GLI++TNDG+FA ++HPS K+ K Y+A ++G V+ + +
Sbjct: 96 GVPRGIRLFHVGRLDTETSGLILLTNDGEFANRMTHPSYKVLKTYLADVEGRVDDKVIRR 155
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+S+G +E PD V L+ Q + + +HEGRN VR ++ + + L R
Sbjct: 156 LSKGLTLEDGPVKPDAVRLV--QAGDEHSLVEVSLHEGRNRIVRRMMDSVAHPVRRLSRT 213
Query: 136 RIGGFRL 142
IG RL
Sbjct: 214 AIGPVRL 220
>gi|254974047|ref|ZP_05270519.1| putative RNA pseudouridine synthase [Clostridium difficile
QCD-66c26]
gi|255091448|ref|ZP_05320926.1| putative RNA pseudouridine synthase [Clostridium difficile CIP
107932]
gi|255313181|ref|ZP_05354764.1| putative RNA pseudouridine synthase [Clostridium difficile
QCD-76w55]
gi|255515866|ref|ZP_05383542.1| putative RNA pseudouridine synthase [Clostridium difficile
QCD-97b34]
gi|255648959|ref|ZP_05395861.1| putative RNA pseudouridine synthase [Clostridium difficile
QCD-37x79]
gi|306519077|ref|ZP_07405424.1| pseudouridine synthase [Clostridium difficile QCD-32g58]
gi|384359714|ref|YP_006197566.1| pseudouridine synthase, partial [Clostridium difficile BI1]
Length = 172
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG + V P + K Y A IDG V + + A EG V++
Sbjct: 33 FPVGRLDKDTEGLLVLTNDGKLSHRVLSPKKHVPKTYYAKIDGVVTEEDVEAFLEGVVLD 92
Query: 84 GTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T +P Q +I + I + +HEG+ H+V+ + ++ G K+ LKRL +G
Sbjct: 93 DGYKT------MPSQLNILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGN 146
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL ++KL+
Sbjct: 147 LKLDESLELGEYRELTDEEVKLI 169
>gi|90021367|ref|YP_527194.1| ribosomal large subunit pseudouridine synthase B [Saccharophagus
degradans 2-40]
gi|89950967|gb|ABD80982.1| ribosomal large subunit pseudouridine synthase B [Saccharophagus
degradans 2-40]
Length = 398
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R +VGRLD T+GL++ TNDG+ A + HPSS + +EY+ + G V+ L
Sbjct: 102 PRLKSGRWISVGRLDFNTSGLLLFTNDGELAHKLMHPSSNIDREYLVRVQGEVDGDMLQR 161
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G ++E +++P + VV EG+N EVR L ++ ++ LKR+
Sbjct: 162 LRDGVLLEDGLAK--FTDIVPGAQEGSNRWFYCVVMEGKNREVRRLWESQECRVSRLKRV 219
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLKLM 162
R G +PS++ +G +EL+ +LK +
Sbjct: 220 RYGNIFIPSNVRVGQWIELEDKELKEL 246
>gi|418156976|ref|ZP_12793694.1| hypothetical protein SPAR41_0753 [Streptococcus pneumoniae GA16833]
gi|353824997|gb|EHE05164.1| hypothetical protein SPAR41_0753 [Streptococcus pneumoniae GA16833]
Length = 225
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T+ G + HP + K Y ++G + H+ A +G V
Sbjct: 78 KLYAVGRLDRDTTGLLLLTDSGPLGFQLLHPQYHVDKTYQVQVNGLLTPDHIQAFQKGIV 137
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 138 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 195
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 196 TLNPDLAESNYRPLNQKELQII 217
>gi|414564306|ref|YP_006043267.1| ribosomal small subunit pseudouridine synthase A RsuA
[Streptococcus equi subsp. zooepidemicus ATCC 35246]
gi|338847371|gb|AEJ25583.1| ribosomal small subunit pseudouridine synthase A RsuA
[Streptococcus equi subsp. zooepidemicus ATCC 35246]
Length = 237
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 78/140 (55%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD T GL++VTNDG A A+ P + K+Y+A +DG + + + ++G +
Sbjct: 96 VFPVGRLDKDTHGLLLVTNDGKLAHALLSPKKHVAKQYLAVVDGMMTQEDVKHFAQGITL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +++L + ++I + EG+ H+V+ +V G + L+R+ +G +L
Sbjct: 156 KDHQCMPAYLDILEINESLKTSLVKITIEEGKFHQVKRMVGACGKTVSDLQRISMGPLQL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
S L G + L ++L+ +
Sbjct: 216 DSALAPGAYCRLTAAELETL 235
>gi|421767279|ref|ZP_16204034.1| Ribosomal small subunit pseudouridine synthase A [Lactococcus
garvieae DCC43]
gi|407624199|gb|EKF50980.1| Ribosomal small subunit pseudouridine synthase A [Lactococcus
garvieae DCC43]
Length = 225
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+++TNDG + + P ++KEY A I G V + + + G
Sbjct: 82 RADIFPVGRLDKDTEGLLLLTNDGALSHNLLSPKKHVEKEYFAQIRGQVTEETIQQFAAG 141
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
T+ G P EL + D IR+++HEG+ H+V+ + + +K+ LKR+R+G
Sbjct: 142 LTLKSGEAVKPG--ELFIEKSDEESSEIRLIIHEGKFHQVKRMFEAVDMKVTYLKRIRMG 199
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
+L L +G + LK ++K
Sbjct: 200 SLQLAKTLNLGEYRPLKSEEIK 221
>gi|304440267|ref|ZP_07400157.1| ribosomal large subunit pseudouridine synthase B [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371316|gb|EFM24932.1| ribosomal large subunit pseudouridine synthase B [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 234
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD+ TTGL+I+TNDG+ A + HP ++ K YIAT++G +K L + G
Sbjct: 94 RIYPIGRLDIDTTGLLILTNDGELANKLMHPRKEIDKVYIATVEGTPSKSGLDKLRNGIT 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G + +++L +R+ +HEGRN +V+++ + G + LKR+ G
Sbjct: 154 IDGYKLSKSEIKILKSYE--SDSIVRVTIHEGRNRQVKKMFERIGNPVKKLKRISFGPIE 211
Query: 142 LPSDLGIGMHVELKQSDLK 160
L ++L IG + L ++K
Sbjct: 212 L-ANLEIGAYRYLTNEEIK 229
>gi|339498090|ref|ZP_08659066.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 238
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 67/113 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG++++TNDG A + HP +K+ K Y+A ++G + L + G V
Sbjct: 109 RVYPVGRLDYDTTGVLLLTNDGVVANQLMHPKTKVDKTYVAKVEGIATEEKLAPLKRGVV 168
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
++G P V + +P +R+ +HEGRNH+V+ ++ GL + LKR
Sbjct: 169 LKGRKTAPARVSIERIEPTKRTSMVRLTIHEGRNHQVKNMLAKVGLPVQKLKR 221
>gi|306825646|ref|ZP_07458985.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432007|gb|EFM34984.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 241
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 87/153 (56%), Gaps = 3/153 (1%)
Query: 11 WDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNK 70
D +P + +++ +GRLD TTGL+++T++G + HP + K Y ++G +
Sbjct: 83 MDLLSPDIQSDQIYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGPLTP 142
Query: 71 RHLIAISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKL 129
H+ EG V ++GT C P +E+L P + I I EG+ H+V+++ + G+K+
Sbjct: 143 DHIQRFKEGIVFLDGTTCKPATLEILSSSPSSSQATITI--SEGKFHQVKKMFFSVGVKV 200
Query: 130 YSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
SLKR++ G F L S+L G + L Q +L+++
Sbjct: 201 VSLKRVQFGDFTLDSELAEGQYRFLNQEELEII 233
>gi|55823410|ref|YP_141851.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
thermophilus CNRZ1066]
gi|55739395|gb|AAV63036.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
thermophilus CNRZ1066]
Length = 243
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 81/138 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A + G +++ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKRHVDKIYQAKVAGIMDEEDILAFEKGIK 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ + ++I + EG+ H+V+ +V G ++ L+RL++G
Sbjct: 155 LKDHTCQPAKLEIVSVDRNASTSLVQITIAEGKFHQVKRMVAACGKEVADLQRLKMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDL 159
LP+DL +G L Q +L
Sbjct: 215 LPNDLELGDWRRLTQEEL 232
>gi|423088928|ref|ZP_17077296.1| pseudouridylate synthase [Clostridium difficile 70-100-2010]
gi|357558839|gb|EHJ40313.1| pseudouridylate synthase [Clostridium difficile 70-100-2010]
Length = 240
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG + V P + K Y A IDG V + + A EG V++
Sbjct: 101 FPVGRLDKDTEGLLVLTNDGKLSHRVLSPKKHVPKTYYAKIDGVVTEEDVEAFLEGVVLD 160
Query: 84 GTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T +P Q +I + I + +HEG+ H+V+ + ++ G K+ LKRL +G
Sbjct: 161 DGYKT------MPSQLNILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGN 214
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL ++KL+
Sbjct: 215 LKLDESLELGEYRELTDEEVKLI 237
>gi|239827574|ref|YP_002950198.1| pseudouridine synthase [Geobacillus sp. WCH70]
gi|239807867|gb|ACS24932.1| pseudouridine synthase [Geobacillus sp. WCH70]
Length = 243
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 8/131 (6%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D+ K DKR ++ +GRLD T+G++++TNDGDFA + HP +++K YIA +
Sbjct: 86 DFFKDVDKR--------IYPIGRLDYDTSGILLLTNDGDFANLLMHPRYEIEKVYIAKVK 137
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G + L + G ++E P V+LL I I +HEGRN +VR + +
Sbjct: 138 GIPTREQLKQLERGIMLEDGMTAPAKVKLLSHNKQKQTAIIEIRIHEGRNRQVRRMFEAI 197
Query: 126 GLKLYSLKRLR 136
G K+ LKR R
Sbjct: 198 GCKVMKLKRER 208
>gi|220929584|ref|YP_002506493.1| pseudouridine synthase [Clostridium cellulolyticum H10]
gi|219999912|gb|ACL76513.1| pseudouridine synthase [Clostridium cellulolyticum H10]
Length = 245
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TV 81
LF GRLD+ T GL+++TNDG + + P + K+Y A + G VN+ A S G T+
Sbjct: 100 LFPAGRLDIDTEGLVLMTNDGQLSHEILSPKKHVPKQYYAKVMGRVNQEDAEAFSRGVTL 159
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+G P V+E+L D+ ++ IV EG+ H+V+ + + G K+ LKRL +G R
Sbjct: 160 DDGYQTLPAVLEILKSD-DLSEIKLTIV--EGKFHQVKRMFEAVGKKVIYLKRLSMGNLR 216
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L +G EL +SD++L+
Sbjct: 217 LDESLQLGECKELGESDIELL 237
>gi|393201503|ref|YP_006463345.1| 16S rRNA uridine-516 pseudouridylate synthase [Solibacillus
silvestris StLB046]
gi|327440834|dbj|BAK17199.1| 16S rRNA uridine-516 pseudouridylate synthase [Solibacillus
silvestris StLB046]
Length = 247
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGL+++TNDG+F+ ++HP K+ K YIA + G K+ L+ + G
Sbjct: 95 RIFPVGRLDYDTTGLLLLTNDGEFSNLMTHPKFKIDKTYIARVKGIPTKQGLMKLQSGIK 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V + + I +HEGRN +VR + + G + LKR R
Sbjct: 155 LEDGKTAPAKVSMTSFDEKAGKAICEITIHEGRNRQVRRMFEAIGTPVVKLKRERFAFLD 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L + L G + +L + ++KL+
Sbjct: 215 L-TGLSPGEYRQLTKHEVKLL 234
>gi|325679067|ref|ZP_08158661.1| pseudouridylate synthase [Ruminococcus albus 8]
gi|324109191|gb|EGC03413.1| pseudouridylate synthase [Ruminococcus albus 8]
Length = 244
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G+P R++ VGRLD + GL+++TNDG FA + HPS + K Y T+ +N L+ +
Sbjct: 95 GVPE-RVYPVGRLDKDSEGLLLLTNDGGFANDIMHPSRHVAKTYRVTVRPDINDEQLVKL 153
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+ G I+G V +L QP+ R +++ +HEGRN ++R++ + GL++ LKR
Sbjct: 154 ASGVEIDGRMTAECSVVVLDKQPN--RVVLQMTIHEGRNRQIRKMCEAVGLEVARLKRTA 211
Query: 137 IGGFRLPSDLGIGMHVELKQSDLK 160
+G RL L G ELK +L+
Sbjct: 212 VGPLRLGM-LKAGEWRELKPDELR 234
>gi|154497957|ref|ZP_02036335.1| hypothetical protein BACCAP_01937 [Bacteroides capillosus ATCC
29799]
gi|150272947|gb|EDN00104.1| pseudouridylate synthase [Pseudoflavonifractor capillosus ATCC
29799]
Length = 246
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD+ + GL+++T+DG+F Q + HPS +++KEY+ T++G V+ R + +S
Sbjct: 96 RVWPVGRLDLDSEGLLLMTDDGNFTQRLIHPSHQVEKEYLVTVEGDVD-RAIPVLSGPME 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P + +L + R R+ +V+HEGRN +VR + AGL++ LKR+R GG
Sbjct: 155 LDGIPLAPARIGVL-SREGADRARLSVVIHEGRNRQVRRMCALAGLEVKRLKRVREGGLA 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|255099545|ref|ZP_05328522.1| putative RNA pseudouridine synthase [Clostridium difficile
QCD-63q42]
Length = 240
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG + V P + K Y A IDG V + + A EG V++
Sbjct: 101 FPVGRLDKDTEGLLVLTNDGKLSHRVLSPKKHVPKTYYAKIDGVVTEEDVEAFLEGVVLD 160
Query: 84 GTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T +P Q +I + I + +HEG+ H+V+ + ++ G K+ LKRL +G
Sbjct: 161 DGYKT------MPSQLNILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGN 214
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL ++KL+
Sbjct: 215 LKLDESLELGEYRELTDEEVKLI 237
>gi|225860671|ref|YP_002742180.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae Taiwan19F-14]
gi|298229808|ref|ZP_06963489.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254812|ref|ZP_06978398.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae str. Canada MDR_19A]
gi|298502474|ref|YP_003724414.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|417312258|ref|ZP_12098974.1| hypothetical protein SPAR5_0652 [Streptococcus pneumoniae GA04375]
gi|418082565|ref|ZP_12719767.1| hypothetical protein SPAR81_0650 [Streptococcus pneumoniae GA44288]
gi|418084764|ref|ZP_12721950.1| hypothetical protein SPAR90_0666 [Streptococcus pneumoniae GA47281]
gi|418093528|ref|ZP_12730658.1| hypothetical protein SPAR110_0649 [Streptococcus pneumoniae
GA49138]
gi|418100549|ref|ZP_12737637.1| hypothetical protein SPAR128_0965 [Streptococcus pneumoniae
7286-06]
gi|418118623|ref|ZP_12755583.1| hypothetical protein SPAR54_0660 [Streptococcus pneumoniae GA18523]
gi|418141288|ref|ZP_12778101.1| hypothetical protein SPAR30_0666 [Streptococcus pneumoniae GA13455]
gi|418152427|ref|ZP_12789167.1| hypothetical protein SPAR38_0663 [Streptococcus pneumoniae GA16121]
gi|418164025|ref|ZP_12800699.1| hypothetical protein SPAR45_0659 [Streptococcus pneumoniae GA17371]
gi|418170903|ref|ZP_12807530.1| hypothetical protein SPAR58_0682 [Streptococcus pneumoniae GA19451]
gi|418195726|ref|ZP_12832206.1| hypothetical protein SPAR103_0919 [Streptococcus pneumoniae
GA47688]
gi|418197585|ref|ZP_12834050.1| hypothetical protein SPAR106_0671 [Streptococcus pneumoniae
GA47778]
gi|418222959|ref|ZP_12849604.1| hypothetical protein SPAR127_0654 [Streptococcus pneumoniae
5185-06]
gi|418227277|ref|ZP_12853897.1| hypothetical protein SPAR135_0654 [Streptococcus pneumoniae
3063-00]
gi|419424721|ref|ZP_13964922.1| pseudouridine synthase family protein [Streptococcus pneumoniae
7533-05]
gi|419426847|ref|ZP_13967030.1| pseudouridine synthase family protein [Streptococcus pneumoniae
5652-06]
gi|419428948|ref|ZP_13969117.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA11856]
gi|419435563|ref|ZP_13975659.1| pseudouridine synthase family protein [Streptococcus pneumoniae
8190-05]
gi|419437643|ref|ZP_13977716.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13499]
gi|419444303|ref|ZP_13984318.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA19923]
gi|419446424|ref|ZP_13986429.1| pseudouridine synthase family protein [Streptococcus pneumoniae
7879-04]
gi|419449121|ref|ZP_13989118.1| pseudouridine synthase family protein [Streptococcus pneumoniae
4075-00]
gi|419450665|ref|ZP_13990652.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP02]
gi|419501429|ref|ZP_14041115.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47628]
gi|419518497|ref|ZP_14058104.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA08825]
gi|419527527|ref|ZP_14067071.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17719]
gi|421287178|ref|ZP_15737944.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
gi|225728241|gb|ACO24092.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae Taiwan19F-14]
gi|298238069|gb|ADI69200.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|327390410|gb|EGE88751.1| hypothetical protein SPAR5_0652 [Streptococcus pneumoniae GA04375]
gi|353758002|gb|EHD38595.1| hypothetical protein SPAR81_0650 [Streptococcus pneumoniae GA44288]
gi|353759999|gb|EHD40581.1| hypothetical protein SPAR90_0666 [Streptococcus pneumoniae GA47281]
gi|353767093|gb|EHD47632.1| hypothetical protein SPAR110_0649 [Streptococcus pneumoniae
GA49138]
gi|353773258|gb|EHD53757.1| hypothetical protein SPAR128_0965 [Streptococcus pneumoniae
7286-06]
gi|353792208|gb|EHD72581.1| hypothetical protein SPAR54_0660 [Streptococcus pneumoniae GA18523]
gi|353805539|gb|EHD85813.1| hypothetical protein SPAR30_0666 [Streptococcus pneumoniae GA13455]
gi|353819072|gb|EHD99270.1| hypothetical protein SPAR38_0663 [Streptococcus pneumoniae GA16121]
gi|353832352|gb|EHE12470.1| hypothetical protein SPAR45_0659 [Streptococcus pneumoniae GA17371]
gi|353837073|gb|EHE17159.1| hypothetical protein SPAR58_0682 [Streptococcus pneumoniae GA19451]
gi|353862253|gb|EHE42186.1| hypothetical protein SPAR103_0919 [Streptococcus pneumoniae
GA47688]
gi|353864785|gb|EHE44696.1| hypothetical protein SPAR106_0671 [Streptococcus pneumoniae
GA47778]
gi|353880231|gb|EHE60047.1| hypothetical protein SPAR127_0654 [Streptococcus pneumoniae
5185-06]
gi|353883650|gb|EHE63456.1| hypothetical protein SPAR135_0654 [Streptococcus pneumoniae
3063-00]
gi|379540351|gb|EHZ05524.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13499]
gi|379552208|gb|EHZ17298.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA11856]
gi|379566472|gb|EHZ31460.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17719]
gi|379571996|gb|EHZ36953.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA19923]
gi|379601790|gb|EHZ66562.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47628]
gi|379613964|gb|EHZ78674.1| pseudouridine synthase family protein [Streptococcus pneumoniae
7879-04]
gi|379617232|gb|EHZ81925.1| pseudouridine synthase family protein [Streptococcus pneumoniae
8190-05]
gi|379618300|gb|EHZ82975.1| pseudouridine synthase family protein [Streptococcus pneumoniae
5652-06]
gi|379620621|gb|EHZ85276.1| pseudouridine synthase family protein [Streptococcus pneumoniae
7533-05]
gi|379624179|gb|EHZ88812.1| pseudouridine synthase family protein [Streptococcus pneumoniae
4075-00]
gi|379624564|gb|EHZ89195.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP02]
gi|379641476|gb|EIA06011.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA08825]
gi|395889587|gb|EJH00594.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
Length = 241
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T+ G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDSGPLGFQLLHPQYHVDKTYQVQVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|229084572|ref|ZP_04216842.1| Pseudouridine synthase [Bacillus cereus Rock3-44]
gi|228698722|gb|EEL51437.1| Pseudouridine synthase [Bacillus cereus Rock3-44]
Length = 242
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 69/117 (58%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A + G + + + +G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGDFANILMHPKYKVEKTYVAKVKGPLTGEKIRMLEKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
V+E P V+++ +++ +HEGRN +VR + + G K+ LKR R
Sbjct: 152 VVLEDGKTAPARVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALGCKVMKLKRER 208
>gi|306829140|ref|ZP_07462330.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
mitis ATCC 6249]
gi|304428226|gb|EFM31316.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
mitis ATCC 6249]
Length = 241
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+ EG V
Sbjct: 94 QLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGPLTSDHIQKFKEGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P R I + EG+ H+V+++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTTCKPAQLEILSSSP--TESRASITISEGKFHQVKKMFLSVGVKVTSLKRVQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L +L G + L +L+++
Sbjct: 212 TLDPELAEGQYRPLNPEELEII 233
>gi|222099396|ref|YP_002533964.1| Pseudouridine synthase [Thermotoga neapolitana DSM 4359]
gi|221571786|gb|ACM22598.1| Pseudouridine synthase [Thermotoga neapolitana DSM 4359]
Length = 240
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD GL++VTNDG+FA V P K++KEY+ ++G + + L + G +
Sbjct: 92 IFPVGRLDKDAEGLLLVTNDGEFAHRVISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSL 151
Query: 83 -EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+G VE I ++IV+ EG+ H+V+ ++ GLK LKR+RIGG R
Sbjct: 152 RDGFFAKAKHVE------KISNDTVKIVITEGKYHQVKRMMAAVGLKTIHLKRVRIGGLR 205
Query: 142 LPSDLGIGMHVELKQSDLK 160
LP ++ G + L + +++
Sbjct: 206 LPQEMKPGEYRFLSEEEVR 224
>gi|167038569|ref|YP_001666147.1| pseudouridine synthase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116965|ref|YP_004187124.1| pseudouridine synthase [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|345016510|ref|YP_004818863.1| pseudouridine synthase Rsu [Thermoanaerobacter wiegelii Rt8.B1]
gi|166857403|gb|ABY95811.1| pseudouridine synthase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319930056|gb|ADV80741.1| pseudouridine synthase [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|344031853|gb|AEM77579.1| pseudouridine synthase Rsu [Thermoanaerobacter wiegelii Rt8.B1]
Length = 241
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 10/150 (6%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
RNP F VGRLD T GL+++TNDGD A + P + K+Y A I G VN+ +
Sbjct: 97 RNP-------FPVGRLDKDTEGLLLITNDGDLAHQLLSPKKNVIKKYYAEILGFVNESDI 149
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
A +EG ++E G P +E+L D+ ++ + + EG+ H+++ + ++ G K+ L
Sbjct: 150 KAFNEGIILEDGYKTLPANLEILFSSSDV--SKVYVYIREGKYHQIKRMFESVGKKVIYL 207
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KRL +G L +L G EL + +L +
Sbjct: 208 KRLAMGSLTLDENLKPGEWRELSEEELSFL 237
>gi|260685750|ref|YP_003216883.1| pseudouridine synthase [Clostridium difficile R20291]
gi|260211766|emb|CBE02116.1| pseudouridine synthase [Clostridium difficile R20291]
Length = 258
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG + V P + K Y A IDG V + + A EG V++
Sbjct: 119 FPVGRLDKDTEGLLVLTNDGKLSHRVLSPKKHVPKTYYAKIDGVVTEEDVEAFLEGVVLD 178
Query: 84 GTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T +P Q +I + I + +HEG+ H+V+ + ++ G K+ LKRL +G
Sbjct: 179 DGYKT------MPSQLNILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGN 232
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL ++KL+
Sbjct: 233 LKLDESLELGEYRELTDEEVKLI 255
>gi|403252931|ref|ZP_10919236.1| 16S pseudouridylate synthase [Thermotoga sp. EMP]
gi|402811693|gb|EJX26177.1| 16S pseudouridylate synthase [Thermotoga sp. EMP]
Length = 239
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
P +F VGRLD GL+I+TNDGDFA V P ++KEYI ++G V + + +
Sbjct: 88 PLKGIFPVGRLDKDAEGLLIITNDGDFAHRVISPKWSVEKEYIVKVEGEVTEDKIEKLKN 147
Query: 79 G-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
G T+ +G VE L ++IV+ EG+ H+++ + GLK LKR RI
Sbjct: 148 GVTLRDGFFAKAKRVEKLSNDT------LKIVITEGKYHQIKRMTAAVGLKTVHLKRTRI 201
Query: 138 GGFRLPSDLGIGMHVELKQSDLK 160
GG LP D+ G + L + ++K
Sbjct: 202 GGLVLPDDMKPGEYRFLSEEEVK 224
>gi|313888050|ref|ZP_07821728.1| pseudouridine synthase B, ribosomal large subunit [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312846005|gb|EFR33388.1| pseudouridine synthase B, ribosomal large subunit [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 235
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD+ TTGL+ +TNDG A + HP K+ K+YI T+DG N R L + EG
Sbjct: 94 RVYPVGRLDIDTTGLVFLTNDGQLANIMMHPRYKIGKKYIVTVDGTPNARELSILREGLD 153
Query: 82 IEGTHCTPDVVELLPP--QPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I +P V +L Q I + I + EG+NH+V+ + G K+ LKR+ IG
Sbjct: 154 IRDLKTSPANVRILKSFKQDSI----LEIEIFEGQNHQVKRMFDYIGHKVKKLKRISIGE 209
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L DL G + L + ++K +
Sbjct: 210 IQL-LDLEPGNYRYLSEKEVKYL 231
>gi|300811357|ref|ZP_07091854.1| pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497721|gb|EFK32746.1| pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 241
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D LK D+ P VGRLD TTGL+++TNDG A + P + K Y A +
Sbjct: 85 DLLKDQDRYQKIAP------VGRLDKDTTGLLLLTNDGQLAHQLLAPEYHVPKTYYALLA 138
Query: 66 GAVNKRHLIAISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKN 124
G ++ AI+ G T+ +GT P +++L D + I I + EG+ H+V+ + +
Sbjct: 139 GVADEETAKAIAAGLTLKDGTELKPGQLKILRQDKDQEQSEIEITITEGKYHQVKRMFAS 198
Query: 125 AGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
G+K+ LKRL +G LP+DL G + L + +L
Sbjct: 199 QGMKVLKLKRLSMGPLTLPADLAPGSYRPLTEEEL 233
>gi|160947164|ref|ZP_02094331.1| hypothetical protein PEPMIC_01096 [Parvimonas micra ATCC 33270]
gi|158446298|gb|EDP23293.1| pseudouridylate synthase [Parvimonas micra ATCC 33270]
Length = 230
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
+ R++ VGRLD + GL+++TNDGD A ++HPS ++KEYI +D + + L +S
Sbjct: 89 SKERIYPVGRLDKDSFGLLLLTNDGDLAFRLTHPSHNVEKEYIVKVDKTLKESDLKKLSS 148
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
G ++EG E+L + +I +++ + EGRN ++R++ K + SL+R+ G
Sbjct: 149 GIMLEGKITRKARFEMLDFKSNI----VKVFLKEGRNRQIRKMFKTLDYNVISLERIAFG 204
Query: 139 GFRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL + +++ +
Sbjct: 205 KIKLGK-LKVGNYRELSKEEIEYL 227
>gi|423080917|ref|ZP_17069530.1| pseudouridylate synthase, partial [Clostridium difficile
002-P50-2011]
gi|423085398|ref|ZP_17073841.1| pseudouridylate synthase, partial [Clostridium difficile
050-P50-2011]
gi|357549719|gb|EHJ31559.1| pseudouridylate synthase, partial [Clostridium difficile
050-P50-2011]
gi|357551690|gb|EHJ33475.1| pseudouridylate synthase, partial [Clostridium difficile
002-P50-2011]
Length = 182
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG + V P + K Y A IDG V + + A EG V++
Sbjct: 43 FPVGRLDKDTEGLLVLTNDGKLSHRVLSPKKHVPKTYYAKIDGVVTEEDVEAFLEGVVLD 102
Query: 84 GTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T +P Q +I + I + +HEG+ H+V+ + ++ G K+ LKRL +G
Sbjct: 103 DGYKT------MPSQLNILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGN 156
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+L L +G + EL ++KL+
Sbjct: 157 LKLDESLELGEYRELTDEEVKLI 179
>gi|15643034|ref|NP_228077.1| 16S pseudouridylate synthase [Thermotoga maritima MSB8]
gi|418046200|ref|ZP_12684294.1| pseudouridine synthase Rsu [Thermotoga maritima MSB8]
gi|4980760|gb|AAD35352.1|AE001708_20 16S pseudouridylate synthase [Thermotoga maritima MSB8]
gi|351675753|gb|EHA58913.1| pseudouridine synthase Rsu [Thermotoga maritima MSB8]
Length = 239
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
P +F VGRLD GL+I+TNDGDFA V P ++KEYI ++G V + + +
Sbjct: 88 PLKGIFPVGRLDKDAEGLLIITNDGDFAHRVISPKWSVEKEYIVKVEGEVTEDKIEKLKN 147
Query: 79 G-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
G T+ +G VE L ++IV+ EG+ H+++ + GLK LKR RI
Sbjct: 148 GVTLRDGFFAKAKRVEKLSNDT------LKIVITEGKYHQIKRMTAAVGLKTVHLKRTRI 201
Query: 138 GGFRLPSDLGIGMHVELKQSDLK 160
GG LP D+ G + L + ++K
Sbjct: 202 GGLVLPDDMKPGEYRFLSEEEVK 224
>gi|228990582|ref|ZP_04150547.1| Pseudouridine synthase [Bacillus pseudomycoides DSM 12442]
gi|228996683|ref|ZP_04156320.1| Pseudouridine synthase [Bacillus mycoides Rock3-17]
gi|229004333|ref|ZP_04162121.1| Pseudouridine synthase [Bacillus mycoides Rock1-4]
gi|228756916|gb|EEM06173.1| Pseudouridine synthase [Bacillus mycoides Rock1-4]
gi|228763002|gb|EEM11912.1| Pseudouridine synthase [Bacillus mycoides Rock3-17]
gi|228769108|gb|EEM17706.1| Pseudouridine synthase [Bacillus pseudomycoides DSM 12442]
Length = 244
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A + G + + + +G V
Sbjct: 96 RLFPIGRLDYDTSGVLLMTNDGDFANILMHPKYKVEKTYVAKVKGPLTGEKIRMLEKGVV 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V++L +++ +HEGRN +VR + + G K+ LKR L
Sbjct: 156 LEDGKTAPARVKILSWDKRKEMAIVQLTIHEGRNRQVRRMFEALGCKVMKLKRERYAFLE 215
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 216 VGSLR-PGD 223
>gi|421210645|ref|ZP_15667634.1| hypothetical protein AMCSP03_000657 [Streptococcus pneumoniae
2070035]
gi|421231459|ref|ZP_15688106.1| hypothetical protein AMCSP16_000609 [Streptococcus pneumoniae
2080076]
gi|395575015|gb|EJG35587.1| hypothetical protein AMCSP03_000657 [Streptococcus pneumoniae
2070035]
gi|395596558|gb|EJG56774.1| hypothetical protein AMCSP16_000609 [Streptococcus pneumoniae
2080076]
Length = 241
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A + V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYYVDKTYQVEVNGLLTPDHIQAFQKRIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|297626538|ref|YP_003688301.1| pseudouridine synthase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296922303|emb|CBL56875.1| Pseudouridine synthase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 275
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD T GLII+TNDG+F +SHPS +++K Y+ +G ++ R + + +G
Sbjct: 132 RLFHVGRLDTETEGLIILTNDGEFGHRLSHPSYEVRKTYLVDAEGLMDNRTIRRLEKGLT 191
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E PD V+L+ P ++I +H GRN VR ++ + G + L R+ IG R
Sbjct: 192 LEDGPIKPDRVKLVSRGP--VHTMLQITLHSGRNRIVRRMMDSVGHPVRQLARIGIGPVR 249
Query: 142 LPSDLGIGMHVELKQSDL 159
L +L +G EL + +L
Sbjct: 250 L-GNLAVGETRELSREEL 266
>gi|195978395|ref|YP_002123639.1| ribosomal small subunit pseudouridine synthase A RsuA
[Streptococcus equi subsp. zooepidemicus MGCS10565]
gi|195975100|gb|ACG62626.1| ribosomal small subunit pseudouridine synthase A RsuA
[Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 237
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 78/140 (55%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD T GL++VTNDG A A+ P + K+Y+A +DG + + + ++G +
Sbjct: 96 VFPVGRLDKDTHGLLLVTNDGKLAHALLSPKKHVAKQYLAVVDGMMTQEDVKHFAQGITL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +++L + ++I + EG+ H+V+ +V G + L+R+ +G +L
Sbjct: 156 KDHQCMPAYLDILEINESLKTSLVKITIEEGKFHQVKRMVAACGKTVSDLQRISMGPLQL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
S L G + L ++L+ +
Sbjct: 216 DSALAPGAYRRLTAAELETL 235
>gi|319651400|ref|ZP_08005529.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
gi|317396931|gb|EFV77640.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
Length = 241
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++I+TNDG+FA + HPS++++K Y+A I G +K + ++ G
Sbjct: 92 KQRIYPVGRLDYDTSGILILTNDGEFANLLMHPSNEIEKVYVAKIKGIPSKEGMRSLQRG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
V+E P +LL + I +HEGRN +VR + + G + LKR R G
Sbjct: 152 VVLEDGKTAPAKTKLLSMDKKKQTAIVEISIHEGRNRQVRRMFEAIGHPVLKLKRERYGY 211
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 212 LTLQG-LSAGDARELTAHEVKQL 233
>gi|357638053|ref|ZP_09135926.1| pseudouridylate synthase [Streptococcus urinalis 2285-97]
gi|418416759|ref|ZP_12989958.1| pseudouridine synthase [Streptococcus urinalis FB127-CNA-2]
gi|357586507|gb|EHJ55915.1| pseudouridylate synthase [Streptococcus urinalis 2285-97]
gi|410874577|gb|EKS22508.1| pseudouridine synthase [Streptococcus urinalis FB127-CNA-2]
Length = 238
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D L + D +N +F VGRLD T GL+I+TNDG A + P ++KEYIA +
Sbjct: 85 DLLSNEDYKNG------IFPVGRLDKDTRGLLILTNDGALAHNMLSPKKHVEKEYIAEVK 138
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G + + + +G V++ C P +E++ + R++I + EG+ H+V+ +V
Sbjct: 139 GIMTEADKNSFEQGIVLKDFTCLPARLEIIAINQEKETSRVKITLKEGKFHQVKRMVLAC 198
Query: 126 GLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
G ++ LKR+++G L L G + L +L+L+
Sbjct: 199 GKEVSDLKRIKMGNLLLDKTLKEGSYRRLTSEELELL 235
>gi|281412320|ref|YP_003346399.1| pseudouridine synthase [Thermotoga naphthophila RKU-10]
gi|281373423|gb|ADA66985.1| pseudouridine synthase [Thermotoga naphthophila RKU-10]
Length = 239
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
P +F VGRLD GL+I+TNDGDFA V+ P ++KEYI ++G + + + +
Sbjct: 88 PLKGIFPVGRLDKDAEGLLIITNDGDFAHRVTSPKWSVEKEYIVKVEGEITEDKIEKLKN 147
Query: 79 G-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
G T+ +G VE L ++IV+ EGR H+V+ + GL+ LKR RI
Sbjct: 148 GVTLRDGFFAKAKCVEKLSNDT------LKIVITEGRYHQVKRMTAAVGLRTVHLKRTRI 201
Query: 138 GGFRLPSDLGIGMHVELKQSDLK 160
G LP D+ G + L + ++K
Sbjct: 202 GELVLPDDMKPGEYRFLSEEEVK 224
>gi|170017037|ref|YP_001727956.1| 16S rRNA uridine-516 pseudouridylate synthase [Leuconostoc citreum
KM20]
gi|414596448|ref|ZP_11446023.1| Pseudouridine synthase [Leuconostoc citreum LBAE E16]
gi|421876355|ref|ZP_16307913.1| Pseudouridine synthase [Leuconostoc citreum LBAE C10]
gi|421878105|ref|ZP_16309588.1| Pseudouridine synthase [Leuconostoc citreum LBAE C11]
gi|169803894|gb|ACA82512.1| 16S rRNA uridine-516 pseudouridylate synthase [Leuconostoc citreum
KM20]
gi|372557876|emb|CCF24033.1| Pseudouridine synthase [Leuconostoc citreum LBAE C10]
gi|390447980|emb|CCF25708.1| Pseudouridine synthase [Leuconostoc citreum LBAE C11]
gi|390482910|emb|CCF28084.1| Pseudouridine synthase [Leuconostoc citreum LBAE E16]
Length = 249
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 69/121 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG +++TNDG A + HP S++ K Y+A + G L + +G +
Sbjct: 99 RVYPVGRLDYDTTGALLLTNDGTIANQLMHPKSRVDKIYLAKVSGIATVEKLAPLKQGVI 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + D +RI++HEGRNH+V+++++ GL + L R + F
Sbjct: 159 IKGRKTAPARVTIERVDKDKKTSMVRIIIHEGRNHQVKDMLQKVGLPVDKLTREQYAFFD 218
Query: 142 L 142
L
Sbjct: 219 L 219
>gi|104773810|ref|YP_618790.1| pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513816|ref|YP_812722.1| 16S rRNA uridine-516 pseudouridylate synthase related
pseudouridylate synthase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|385815437|ref|YP_005851828.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
gi|418029188|ref|ZP_12667736.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|418035936|ref|ZP_12674374.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|103422891|emb|CAI97553.1| Pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093131|gb|ABJ58284.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|325125474|gb|ADY84804.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
gi|354689095|gb|EHE89107.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354690906|gb|EHE90848.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 241
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D LK D+ P VGRLD TTGL+++TNDG A + P + K Y A +
Sbjct: 85 DLLKDQDRYQKIAP------VGRLDKDTTGLLLLTNDGQLAHQLLAPEYHVPKTYYALLA 138
Query: 66 GAVNKRHLIAISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKN 124
G ++ AI+ G T+ +GT P + +L D + I I + EG+ H+V+ + +
Sbjct: 139 GVADEETAKAIAAGLTLKDGTELKPGQLNILRQDKDQEQSEIEITITEGKYHQVKRMFAS 198
Query: 125 AGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
G+K+ LKRL +G LP+DL G + L + +L
Sbjct: 199 QGMKVLKLKRLSMGPLTLPADLAPGSYRPLTEEEL 233
>gi|306830208|ref|ZP_07463392.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
mitis ATCC 6249]
gi|304427734|gb|EFM30830.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
mitis ATCC 6249]
Length = 240
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DDY ++ +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDYARA----------KEVFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A ++G +++ + ++G ++ C P +EL+ P+ + +R+ + EG+ H+V+
Sbjct: 134 LAQVEGIMSQEDVDTFAKGIPLKDFTCQPAKLELVSVDPEKNQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVAYCGKEVVDLQRLTMGTLALDENLERGEWRRLTKEELEVL 235
>gi|373494468|ref|ZP_09585071.1| hypothetical protein HMPREF0380_00709 [Eubacterium infirmum F0142]
gi|371968398|gb|EHO85857.1| hypothetical protein HMPREF0380_00709 [Eubacterium infirmum F0142]
Length = 233
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD T+G+II+TNDG+FA ++HP +L K Y A + G ++K+ + G
Sbjct: 94 RLFPVGRLDYNTSGMIILTNDGEFAYKLAHPKHELPKTYRAHVTGYLSKQKCHRLINGVD 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRI-RIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I G D VE++ D+P+ I I +HEG+N +VR++ G ++ L+R+ IG
Sbjct: 154 IGGFRVKADSVEIV---KDLPKSTIVDITIHEGKNRQVRKMFAAVGNQVQELQRIAIGDI 210
Query: 141 RLPSDLGIGMHVELKQSDL-KLMG 163
++ L +G + +L + ++ KL G
Sbjct: 211 KIGR-LSVGHYRKLTREEINKLQG 233
>gi|307704494|ref|ZP_07641403.1| conserved hypothetical protein [Streptococcus mitis SK597]
gi|307621963|gb|EFO00991.1| conserved hypothetical protein [Streptococcus mitis SK597]
Length = 241
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + R I I EG+ H+V+++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPARLEILSASPSLSRASITI--SEGKFHQVKKMFLSIGVKVTSLKRVQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L ++L G + L +L+++
Sbjct: 212 TLDTELTEGHYRPLNPEELEII 233
>gi|312793758|ref|YP_004026681.1| pseudouridine synthase [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180898|gb|ADQ41068.1| pseudouridine synthase [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 240
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGLI++TNDG+FA V+HP ++K YIA I G +K + +G +
Sbjct: 100 RVFPVGRLDFDTTGLILLTNDGEFAYKVTHPKHDIEKTYIALIRGIPSKEEIERFEKGLL 159
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + I +HEGRN ++R++ G ++ LKR+ IG +
Sbjct: 160 IDGKMTAPAKFKILKLIN--GNALVEIKIHEGRNRQIRKMCDQIGHEVLKLKRVAIGKLQ 217
Query: 142 L 142
L
Sbjct: 218 L 218
>gi|419781249|ref|ZP_14307081.1| pseudouridylate synthase [Streptococcus oralis SK100]
gi|383184641|gb|EIC77155.1| pseudouridylate synthase [Streptococcus oralis SK100]
Length = 241
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 88 PDIQSDQLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGLLTPEHIQK 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +E+L P R I + EG+ H+V+++ + G+K+ +LKR
Sbjct: 148 FKDGIVFLDGTTCKPAQLEILSSSP--TESRASITISEGKFHQVKKMFLSVGVKVTALKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L +L G + L +L+++
Sbjct: 206 VQFGDFTLNPELAEGQYRPLNPEELEII 233
>gi|322377564|ref|ZP_08052054.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
M334]
gi|321281329|gb|EFX58339.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
M334]
Length = 240
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDLARSKE----------VFPVGRLDIDTHGLLLLTNDGKLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + ++G ++ C P ++EL+ P+ + +IR+ + EG+ H+V+
Sbjct: 134 LAQVKGIMTQEDVETFAKGISLKDFTCQPAILELVSIDPEKNQSQIRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L L G L + +L+++
Sbjct: 194 MVTYCGKEVVDLQRLTMGTLVLDESLQRGEWRRLTKEELEIL 235
>gi|429334909|ref|ZP_19215556.1| RNA-binding S4 domain-containing protein [Pseudomonas putida CSV86]
gi|428760316|gb|EKX82583.1| RNA-binding S4 domain-containing protein [Pseudomonas putida CSV86]
Length = 353
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R VGRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 106 LPRPKEGRWINVGRLDINTTGLLLFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMIA 165
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ EG V+E +++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 166 RLKEGVVLEDGPARFTDIQVAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 224
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 225 VRFGPVFLNSDLPMGRWREMSQGEIDIL 252
>gi|312863597|ref|ZP_07723835.1| pseudouridylate synthase [Streptococcus vestibularis F0396]
gi|311101133|gb|EFQ59338.1| pseudouridylate synthase [Streptococcus vestibularis F0396]
Length = 243
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 82/141 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD+ T GL+++TN+GD A A+ P + K Y A + G +++ ++A +G
Sbjct: 95 QVFPVGRLDIDTHGLLLLTNNGDLAHAMLSPKKHVDKIYQAKVAGVMDEEDILAFEKGIK 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ C P +E++ + ++I + EG+ H+V+ +V G ++ L+RL +G
Sbjct: 155 LKDHTCQPAKLEIVSVDRNESTSWVQITIAEGKFHQVKRMVAACGKEVTELQRLSMGPLS 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
LP+DL +G L + +L+ +
Sbjct: 215 LPNDLELGTWRRLTEEELEAL 235
>gi|225856373|ref|YP_002737884.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae P1031]
gi|444409220|ref|ZP_21205817.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0076]
gi|444411975|ref|ZP_21208301.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0153]
gi|444422080|ref|ZP_21217744.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0446]
gi|225725742|gb|ACO21594.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae P1031]
gi|444275307|gb|ELU80934.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0153]
gi|444279954|gb|ELU85334.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0076]
gi|444288576|gb|ELU93468.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0446]
Length = 241
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ +LKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTNLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYHPLNQKELQII 233
>gi|344996238|ref|YP_004798581.1| pseudouridine synthase Rsu [Caldicellulosiruptor lactoaceticus 6A]
gi|343964457|gb|AEM73604.1| pseudouridine synthase Rsu [Caldicellulosiruptor lactoaceticus 6A]
Length = 230
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGLI++TNDG+FA V+HP ++K YIA I G +K + +G +
Sbjct: 90 RVFPVGRLDFDTTGLILLTNDGEFAYKVTHPKHDIEKTYIALIRGIPSKEEIDRFEKGLL 149
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P ++L + I +HEGRN ++R++ G ++ LKR+ IG +
Sbjct: 150 IDGKMTAPAKFKILKLIN--GNALVEIKIHEGRNRQIRKMCAQIGHEVLKLKRVAIGKLQ 207
Query: 142 L 142
L
Sbjct: 208 L 208
>gi|373856682|ref|ZP_09599426.1| pseudouridine synthase [Bacillus sp. 1NLA3E]
gi|372453661|gb|EHP27128.1| pseudouridine synthase [Bacillus sp. 1NLA3E]
Length = 242
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+G++++TNDG+FA + HP ++++K Y+A I G +K L + G
Sbjct: 92 KQRVYPVGRLDYDTSGVLLLTNDGEFANLLMHPRNEIEKVYVAKIKGVPSKEKLNILQRG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
V+E P V+++ I I +HEG+N +VR + + G + LKR R GG
Sbjct: 152 VVLEDGKTAPAKVKMISSDTKKETAIIEISIHEGKNRQVRRMFEAIGHPVLKLKRERYGG 211
Query: 140 FRL 142
L
Sbjct: 212 INL 214
>gi|350569100|ref|ZP_08937497.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
avidum ATCC 25577]
gi|348660678|gb|EGY77385.1| ribosomal large subunit pseudouridine synthase B [Propionibacterium
avidum ATCC 25577]
Length = 245
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 3/138 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD T+GLI++TNDG+F+ ++HPS K+ K Y+A ++G V+ + + +++G
Sbjct: 102 RLFHVGRLDTETSGLILLTNDGEFSNRMTHPSYKVLKTYLADVEGRVDAKVIRRLAKGIT 161
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E PD V L+ Q + + + +HEGRN VR ++ + + L R IG R
Sbjct: 162 LEDGPVKPDAVRLV--QANDEHSLVEVSLHEGRNRIVRRMMDSVAHPVRRLSRTAIGPVR 219
Query: 142 LPSDLGIGMHVELKQSDL 159
L LG G EL + +L
Sbjct: 220 L-GRLGRGDMRELTREEL 236
>gi|25011583|ref|NP_735978.1| hypothetical protein gbs1541 [Streptococcus agalactiae NEM316]
gi|77414111|ref|ZP_00790278.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae 515]
gi|24413122|emb|CAD47200.1| unknown [Streptococcus agalactiae NEM316]
gi|77159822|gb|EAO70966.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae 515]
Length = 240
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 74/127 (58%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ TTGL+++TN+G+ A + P + K Y A I G + + ++A +G ++
Sbjct: 96 VFPVGRLDIDTTGLLLITNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIIL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P ++E++ + ++I + EG+ H+V+ +V G ++ LKRLR+G +L
Sbjct: 156 KDFTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLRMGNLQL 215
Query: 143 PSDLGIG 149
L G
Sbjct: 216 DKQLESG 222
>gi|410459442|ref|ZP_11313193.1| pseudouridine synthase [Bacillus azotoformans LMG 9581]
gi|409930418|gb|EKN67419.1| pseudouridine synthase [Bacillus azotoformans LMG 9581]
Length = 242
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 70/121 (57%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+ R+F +GRLD T+GL+++TNDG+FA + HP ++KEY+A ++G + L +
Sbjct: 90 FEKRRIFPIGRLDYHTSGLLLLTNDGEFANVLMHPKYNIEKEYVAKVNGIPTREDLRKLE 149
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+G +E P ++L +++++HEG+N +VR + + G K+ LKR R
Sbjct: 150 KGVQLEEGKTAPAKAKMLSLDKKKGTSIVQLIIHEGKNRQVRRMFEAIGYKVQKLKRERY 209
Query: 138 G 138
G
Sbjct: 210 G 210
>gi|407718432|ref|YP_006795837.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
carnosum JB16]
gi|407242188|gb|AFT81838.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
carnosum JB16]
Length = 249
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 67/113 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG++++TNDG+ A + HP S++ K Y+A ++G + L + G V
Sbjct: 99 RVYPVGRLDYDTTGVLLLTNDGEMANQLMHPKSRVDKVYVAKVEGVASDDKLAPLKRGVV 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
I+G P V + IR+V+HEGRNH+V+ +++ GL + L R
Sbjct: 159 IKGRKTAPARVAIERIDKAKKTSMIRLVIHEGRNHQVKNMLQKVGLPVSKLTR 211
>gi|307706267|ref|ZP_07643081.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307618358|gb|EFN97511.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 241
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 88 PDIQSDKLYALGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVQVNGLLTPDHIQV 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +++L P + I + EG+ H+V+++ + G+K+ SLKR
Sbjct: 148 FQKGIVFLDGTVCKPARLKILAASPS--HSQASITISEGKFHQVKKMFLSVGVKVTSLKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L DL G + L Q +L+++
Sbjct: 206 IQFGDFTLKPDLAEGNYRPLNQKELQII 233
>gi|260583963|ref|ZP_05851711.1| ribosomal large subunit pseudouridine synthase B [Granulicatella
elegans ATCC 700633]
gi|260158589|gb|EEW93657.1| ribosomal large subunit pseudouridine synthase B [Granulicatella
elegans ATCC 700633]
Length = 241
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 9/159 (5%)
Query: 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYI 61
++ DY K +P+ R++ VGRLD TTGLI++TNDG+FA ++HP ++K+YI
Sbjct: 82 TVISDYFKD-------IPQ-RVYPVGRLDYDTTGLILLTNDGEFANLMTHPKHHVEKKYI 133
Query: 62 ATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVREL 121
A + G RH+ + G I+G + V +L + + + +HEG NH+V+++
Sbjct: 134 AKVKGVPTPRHMRQLERGIWIDGKKTSKAVARILSVDTEKNTGIVSLTIHEGWNHQVKKM 193
Query: 122 VKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+ L + LKR G L +L G + EL+ +++
Sbjct: 194 FEAVELPVQKLKREEFGFLTL-ENLRPGDYRELRAFEVQ 231
>gi|326204454|ref|ZP_08194312.1| pseudouridine synthase [Clostridium papyrosolvens DSM 2782]
gi|325985486|gb|EGD46324.1| pseudouridine synthase [Clostridium papyrosolvens DSM 2782]
Length = 247
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
LF GRLD+ T GL+++TNDG + + P + K+Y A + G VN+ A +G +
Sbjct: 100 LFPAGRLDIDTEGLVLMTNDGQLSHEILSPKKHVPKQYYAKVLGRVNQEDADAFRQGVTL 159
Query: 83 EGTHCT-PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+ + T P V+E+L I++ + EG+ H+V+ + + G K+ LKRL +G R
Sbjct: 160 DDGYSTLPAVLEVLKSD---ELSEIKLTIVEGKFHQVKRMFEAVGKKVIYLKRLSMGNLR 216
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L +L +G EL +SD++L+
Sbjct: 217 LDENLKLGECKELGESDIELL 237
>gi|221231495|ref|YP_002510647.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae ATCC 700669]
gi|225854205|ref|YP_002735717.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae JJA]
gi|415697580|ref|ZP_11456810.1| hypothetical protein CGSSp4595_0602 [Streptococcus pneumoniae
459-5]
gi|415749097|ref|ZP_11477041.1| hypothetical protein CGSSpSV35_0784 [Streptococcus pneumoniae SV35]
gi|415751778|ref|ZP_11478889.1| hypothetical protein CGSSpSV36_0501 [Streptococcus pneumoniae SV36]
gi|418122954|ref|ZP_12759889.1| hypothetical protein SPAR82_0619 [Streptococcus pneumoniae GA44378]
gi|418127540|ref|ZP_12764436.1| hypothetical protein SPAR144_0615 [Streptococcus pneumoniae NP170]
gi|418136712|ref|ZP_12773555.1| hypothetical protein SPAR24_0607 [Streptococcus pneumoniae GA11663]
gi|418177712|ref|ZP_12814296.1| hypothetical protein SPAR73_0638 [Streptococcus pneumoniae GA41565]
gi|419472736|ref|ZP_14012589.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13430]
gi|220673955|emb|CAR68464.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae ATCC 700669]
gi|225723188|gb|ACO19041.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae JJA]
gi|353798427|gb|EHD78757.1| hypothetical protein SPAR82_0619 [Streptococcus pneumoniae GA44378]
gi|353800001|gb|EHD80315.1| hypothetical protein SPAR144_0615 [Streptococcus pneumoniae NP170]
gi|353844486|gb|EHE24529.1| hypothetical protein SPAR73_0638 [Streptococcus pneumoniae GA41565]
gi|353902640|gb|EHE78168.1| hypothetical protein SPAR24_0607 [Streptococcus pneumoniae GA11663]
gi|379553638|gb|EHZ18722.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13430]
gi|381309474|gb|EIC50307.1| hypothetical protein CGSSpSV36_0501 [Streptococcus pneumoniae SV36]
gi|381317391|gb|EIC58116.1| hypothetical protein CGSSpSV35_0784 [Streptococcus pneumoniae SV35]
gi|381319178|gb|EIC59894.1| hypothetical protein CGSSp4595_0602 [Streptococcus pneumoniae
459-5]
Length = 241
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ LKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTILKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|168492837|ref|ZP_02716980.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC3059-06]
gi|418073529|ref|ZP_12710789.1| hypothetical protein SPAR19_0673 [Streptococcus pneumoniae GA11184]
gi|418078178|ref|ZP_12715401.1| hypothetical protein SPAR123_0618 [Streptococcus pneumoniae
4027-06]
gi|418081062|ref|ZP_12718272.1| hypothetical protein SPAR121_1358 [Streptococcus pneumoniae
6735-05]
gi|418089078|ref|ZP_12726236.1| hypothetical protein SPAR77_0664 [Streptococcus pneumoniae GA43265]
gi|418098053|ref|ZP_12735153.1| hypothetical protein SPAR122_0630 [Streptococcus pneumoniae
6901-05]
gi|418104730|ref|ZP_12741790.1| hypothetical protein SPAR85_0654 [Streptococcus pneumoniae GA44500]
gi|418114172|ref|ZP_12751163.1| hypothetical protein SPAR125_0570 [Streptococcus pneumoniae
5787-06]
gi|418116410|ref|ZP_12753384.1| hypothetical protein SPAR124_0622 [Streptococcus pneumoniae
6963-05]
gi|418134417|ref|ZP_12771275.1| hypothetical protein SPAR23_0688 [Streptococcus pneumoniae GA11426]
gi|418173043|ref|ZP_12809657.1| hypothetical protein SPAR67_0644 [Streptococcus pneumoniae GA41277]
gi|418216132|ref|ZP_12842856.1| hypothetical protein SPAR147_0641 [Streptococcus pneumoniae
Netherlands15B-37]
gi|419431083|ref|ZP_13971229.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP05]
gi|419433344|ref|ZP_13973463.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40183]
gi|419439896|ref|ZP_13979950.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40410]
gi|419464221|ref|ZP_14004114.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA04175]
gi|419497627|ref|ZP_14037335.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47522]
gi|419534121|ref|ZP_14073628.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17457]
gi|421280668|ref|ZP_15731467.1| pseudouridine synthase [Streptococcus pneumoniae GA04672]
gi|421309112|ref|ZP_15759741.1| pseudouridine synthase [Streptococcus pneumoniae GA62681]
gi|183576842|gb|EDT97370.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC3059-06]
gi|353747369|gb|EHD28025.1| hypothetical protein SPAR123_0618 [Streptococcus pneumoniae
4027-06]
gi|353751106|gb|EHD31739.1| hypothetical protein SPAR19_0673 [Streptococcus pneumoniae GA11184]
gi|353751801|gb|EHD32432.1| hypothetical protein SPAR121_1358 [Streptococcus pneumoniae
6735-05]
gi|353762765|gb|EHD43323.1| hypothetical protein SPAR77_0664 [Streptococcus pneumoniae GA43265]
gi|353770418|gb|EHD50931.1| hypothetical protein SPAR122_0630 [Streptococcus pneumoniae
6901-05]
gi|353779164|gb|EHD59630.1| hypothetical protein SPAR85_0654 [Streptococcus pneumoniae GA44500]
gi|353787470|gb|EHD67872.1| hypothetical protein SPAR125_0570 [Streptococcus pneumoniae
5787-06]
gi|353790248|gb|EHD70631.1| hypothetical protein SPAR124_0622 [Streptococcus pneumoniae
6963-05]
gi|353839742|gb|EHE19816.1| hypothetical protein SPAR67_0644 [Streptococcus pneumoniae GA41277]
gi|353873183|gb|EHE53044.1| hypothetical protein SPAR147_0641 [Streptococcus pneumoniae
Netherlands15B-37]
gi|353903007|gb|EHE78533.1| hypothetical protein SPAR23_0688 [Streptococcus pneumoniae GA11426]
gi|379539440|gb|EHZ04619.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA04175]
gi|379568155|gb|EHZ33137.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17457]
gi|379577474|gb|EHZ42393.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40183]
gi|379580507|gb|EHZ45397.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40410]
gi|379599891|gb|EHZ64673.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47522]
gi|379632327|gb|EHZ96903.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP05]
gi|395884025|gb|EJG95067.1| pseudouridine synthase [Streptococcus pneumoniae GA04672]
gi|395911856|gb|EJH22720.1| pseudouridine synthase [Streptococcus pneumoniae GA62681]
Length = 241
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + I I EG+ H+++++ + G+K+ LKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSISQASITI--SEGKFHQIKKMFLSVGVKVTILKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|385263244|ref|ZP_10041336.1| pseudouridylate synthase [Streptococcus sp. SK643]
gi|385188558|gb|EIF36043.1| pseudouridylate synthase [Streptococcus sp. SK643]
Length = 241
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 3/153 (1%)
Query: 11 WDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNK 70
D +P +L+ VGRLD TTGL+++T++G + HP + K Y ++G +
Sbjct: 83 MDLLSPKRQSDKLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTP 142
Query: 71 RHLIAISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKL 129
H+ A G V ++GT C P +E+L P + + I I EG+ H+++++ + G+K+
Sbjct: 143 DHIQAFQNGIVFLDGTVCKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKV 200
Query: 130 YSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+LKR++ G F L LG G + L +L+++
Sbjct: 201 TALKRVQFGDFTLDPKLGEGQYRHLNPEELEII 233
>gi|315611910|ref|ZP_07886829.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis ATCC 49296]
gi|315316088|gb|EFU64121.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis ATCC 49296]
Length = 240
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DDY ++ +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDYARA----------KEVFPVGRLDIDTHGLLLLTNDGKLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + A ++G ++ C P +EL+ P+ + +R+ + EG+ H+V+
Sbjct: 134 LAQVKGIMTQEDVDAFAKGIPLKDFTCQPARLELVSVDPEKNQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVAYCGKEVVDLQRLTMGTLVLDENLEQGEWRRLTKEELEVL 235
>gi|302338564|ref|YP_003803770.1| RNA-binding S4 domain-containing protein [Spirochaeta smaragdinae
DSM 11293]
gi|301635749|gb|ADK81176.1| RNA-binding S4 domain protein [Spirochaeta smaragdinae DSM 11293]
Length = 251
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 12/144 (8%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD ++GLI TNDG+FA+ ++HPS +++KEY+ ++ L +G V
Sbjct: 109 RLFNVGRLDFLSSGLIFFTNDGEFAKIITHPSHEIEKEYVVETAKRLSSELLEEFRKGVV 168
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+EG ++ P +++IV+ EG+N E+R+L + +K+ L R+RIG +
Sbjct: 169 VEGELYRIHAYNIISP------VKVKIVLREGKNREIRKLFTSKNIKVKRLHRVRIGPVQ 222
Query: 142 LPSDLGIGMHV-ELKQSDLKLMGW 164
+ GMH E + K + W
Sbjct: 223 IA-----GMHPGEFRNLKPKEIAW 241
>gi|429205280|ref|ZP_19196557.1| Pseudouridine synthase [Lactobacillus saerimneri 30a]
gi|428146352|gb|EKW98591.1| Pseudouridine synthase [Lactobacillus saerimneri 30a]
Length = 232
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RL+ VGRLD T+GL+++TNDGD A + HP K+ K Y+A + G L + G
Sbjct: 86 QQRLYPVGRLDYDTSGLLLMTNDGDLANKLMHPRYKVNKTYVAKVAGIPTNDELEKLRHG 145
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+I+G P ++L + + +HEGRNH+V+++++ G + LKR G
Sbjct: 146 IIIDGRKTAPAKSKVLSTDMKKQTAIVSLTIHEGRNHQVKKMLQAIGHPVKKLKR-ETYG 204
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
F L G + ELK +++L+
Sbjct: 205 FLTLKGLTSGEYRELKHDEIELL 227
>gi|302389711|ref|YP_003825532.1| ribosomal large subunit pseudouridine synthase B
[Thermosediminibacter oceani DSM 16646]
gi|302200339|gb|ADL07909.1| ribosomal large subunit pseudouridine synthase B
[Thermosediminibacter oceani DSM 16646]
Length = 237
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R R+F VGRLD T GL+I+TNDG+ + ++HP +++K Y+A + G ++ I + G
Sbjct: 95 RERVFPVGRLDKDTEGLLILTNDGELSYRLTHPKHEIEKTYVAKVVGTPDESDFIRLRRG 154
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
V+E P V +L D + I++HEGR +VR + K G + SLKR RIG
Sbjct: 155 IVLEDGRTAPAKVRILKAGRDF--TVLEIIIHEGRKRQVRRMCKAIGHPVISLKRTRIGK 212
Query: 140 FRL 142
L
Sbjct: 213 LNL 215
>gi|269119789|ref|YP_003307966.1| RNA-binding S4 domain-containing protein [Sebaldella termitidis
ATCC 33386]
gi|268613667|gb|ACZ08035.1| RNA-binding S4 domain protein [Sebaldella termitidis ATCC 33386]
Length = 228
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 80/144 (55%), Gaps = 7/144 (4%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
+ RLFT GRLD T G+I+V+NDGD V HP KL K YIA +D + + L + +
Sbjct: 89 SKKRLFTYGRLDYMTEGIILVSNDGDTYNKVMHPRKKLFKTYIAKLDKPIEDKDLARLEK 148
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
G +I+G P ++ +++ + EGRN ++R++ +N + LKR+ IG
Sbjct: 149 GILIDGQKTAPAKIKKTDD------AEVKVSIFEGRNRQIRKMFENLHYNVKELKRVTIG 202
Query: 139 GFRLPSDLGIGMHVELKQSDLKLM 162
F++ +L G + +L + +++ +
Sbjct: 203 EFKI-GNLKPGEYRKLTEDEIEYI 225
>gi|85057763|ref|YP_456679.1| 16S rRNA pseudouridylate synthase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789868|gb|ABC65600.1| 16S rRNA pseudouridylate synthase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 245
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 86/145 (59%), Gaps = 11/145 (7%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD TTGL+++TNDGD Q ++HPS + KEY I+ + K+ L +G +
Sbjct: 95 RLYPIGRLDFNTTGLLLITNDGDLTQKLTHPSFCIPKEYHVKINACLQKKDLSTFCKGII 154
Query: 82 IEGTH---CTP-DVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
I+ + C D++++ +P+P +++V+ EG+N +VR++++ G ++ LKR
Sbjct: 155 IDKKYLAVCKEIDILKI----SYMPKPSTWLKLVITEGKNRQVRKMMQALGYQVLKLKRY 210
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLK 160
R F +L IG + LK ++K
Sbjct: 211 RY-SFLTIENLTIGAYRPLKIHEIK 234
>gi|149020294|ref|ZP_01835186.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP23-BS72]
gi|418102379|ref|ZP_12739455.1| hypothetical protein SPAR143_0655 [Streptococcus pneumoniae NP070]
gi|419475053|ref|ZP_14014894.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA14688]
gi|419486164|ref|ZP_14025931.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA44128]
gi|421208515|ref|ZP_15665540.1| hypothetical protein AMCSP11_000696 [Streptococcus pneumoniae
2070005]
gi|421224534|ref|ZP_15681280.1| hypothetical protein AMCSP06_000662 [Streptococcus pneumoniae
2070768]
gi|147930596|gb|EDK81578.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP23-BS72]
gi|353776545|gb|EHD57020.1| hypothetical protein SPAR143_0655 [Streptococcus pneumoniae NP070]
gi|379561391|gb|EHZ26408.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA14688]
gi|379589073|gb|EHZ53913.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA44128]
gi|395576985|gb|EJG37539.1| hypothetical protein AMCSP11_000696 [Streptococcus pneumoniae
2070005]
gi|395591870|gb|EJG52165.1| hypothetical protein AMCSP06_000662 [Streptococcus pneumoniae
2070768]
Length = 241
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ +LKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSIGVKVTNLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYHPLNQKELQII 233
>gi|385840162|ref|YP_005863486.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
gi|300214283|gb|ADJ78699.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
Length = 240
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PG + LF VGRLD TTGL+I+TNDG FA + P + K Y A + G ++++ +
Sbjct: 93 PG-RKEDLFPVGRLDKETTGLLIITNDGKFAHDIISPKKHVSKTYEAVVTGKISEKEVKI 151
Query: 76 ISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
S+G + G P ++++ ++R+++HEG+ H+VR + ++ L R
Sbjct: 152 FSQGMELANGDKLQPAQLDIISYSEKDDTSKVRVIIHEGKYHQVRRMFGAVSQRVLELDR 211
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++IG L L G + EL + +L L+
Sbjct: 212 VKIGLLELDDTLERGEYRELTEEELNLI 239
>gi|310778392|ref|YP_003966725.1| ribosomal large subunit pseudouridine synthase B [Ilyobacter
polytropus DSM 2926]
gi|309747715|gb|ADO82377.1| ribosomal large subunit pseudouridine synthase B [Ilyobacter
polytropus DSM 2926]
Length = 236
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T GLI++TNDGDF + HP S++ KEY + G VNK + + G
Sbjct: 94 QERIYPVGRLDFDTEGLILLTNDGDFFNKIMHPKSEVYKEYHVDVMGKVNKLEIDKLKRG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E P VELL + ++RI + EGRN ++R + K G + LKR +IG
Sbjct: 154 VRLEDGITLPAKVELLDSSHET--SKLRISIREGRNRQIRRMCKAVGHPVTHLKREKIGE 211
Query: 140 FRL 142
L
Sbjct: 212 LSL 214
>gi|90961422|ref|YP_535338.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius UCC118]
gi|90820616|gb|ABD99255.1| Ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius UCC118]
Length = 240
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PG + LF VGRLD TTGL+I+TNDG FA + P + K Y A + G ++++ +
Sbjct: 93 PG-RKEDLFPVGRLDKETTGLLIITNDGKFAHDIISPKKHVSKTYEAVVTGKISEKEVKI 151
Query: 76 ISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
S+G + G P ++++ ++R+++HEG+ H+VR + ++ L R
Sbjct: 152 FSQGMELSNGDKLQPAQLDIISYSEKDDTSKVRVIIHEGKYHQVRRMFGAVSQRVLELDR 211
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++IG L L G + EL + +L L+
Sbjct: 212 VKIGLLELDDTLERGEYRELTEEELNLI 239
>gi|225620831|ref|YP_002722089.1| pseudouridine synthase [Brachyspira hyodysenteriae WA1]
gi|225215651|gb|ACN84385.1| pseudouridine synthase [Brachyspira hyodysenteriae WA1]
Length = 359
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLF GRLD + G++I+TNDG+FA ++HPS ++ K Y T++G ++ L+ S+G
Sbjct: 100 KERLFYAGRLDSESRGIMIITNDGEFANIITHPSYEILKVYDVTVNGKIDSEALLNASKG 159
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+ +P ++L + +IR+ ++EG+N E+R++ + G K+ L+R+ +G
Sbjct: 160 ITIKNVSYSPFKFKILSKGR--IQSKIRLTINEGKNREIRKIFDHLGYKVIDLERISVG 216
>gi|414864871|tpg|DAA43428.1| TPA: hypothetical protein ZEAMMB73_282035, partial [Zea mays]
Length = 57
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 49/53 (92%)
Query: 110 VHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
VHEGRNHEVRELV+NAGL++Y+LKR+RIG FRLP+DLGIG VELKQ+D+K +
Sbjct: 1 VHEGRNHEVRELVQNAGLQVYALKRVRIGRFRLPADLGIGKFVELKQADIKAL 53
>gi|289435297|ref|YP_003465169.1| ribosomal large subunit pseudouridine synthase B [Listeria
seeligeri serovar 1/2b str. SLCC3954]
gi|422419572|ref|ZP_16496527.1| ribosomal large subunit pseudouridine synthase B [Listeria
seeligeri FSL N1-067]
gi|422422665|ref|ZP_16499618.1| ribosomal large subunit pseudouridine synthase B [Listeria
seeligeri FSL S4-171]
gi|289171541|emb|CBH28087.1| ribosomal large subunit pseudouridine synthase B [Listeria
seeligeri serovar 1/2b str. SLCC3954]
gi|313632602|gb|EFR99592.1| ribosomal large subunit pseudouridine synthase B [Listeria
seeligeri FSL N1-067]
gi|313637139|gb|EFS02679.1| ribosomal large subunit pseudouridine synthase B [Listeria
seeligeri FSL S4-171]
Length = 243
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 94 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRELERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 154 IDGRKTAPAKVKIRSSDKAKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLN 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 214 LRG-LNAGERRELSHHEVKQL 233
>gi|347522522|ref|YP_004780093.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
garvieae ATCC 49156]
gi|385833906|ref|YP_005871681.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
garvieae Lg2]
gi|343181090|dbj|BAK59429.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
garvieae ATCC 49156]
gi|343183059|dbj|BAK61397.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
garvieae Lg2]
Length = 236
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+++TNDG + + P ++KEY A I G V + + + G
Sbjct: 93 REDLFPVGRLDKDTEGLLLLTNDGPLSHNLLSPKKHVEKEYFAQIQGQVTQETVREFAAG 152
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
T+ G + P +L + + + IR+++HEG+ H+V+ + + G+K+ LKR+R+G
Sbjct: 153 LTLKSGENVKPG--QLFIEKSEESKSDIRLIIHEGKFHQVKRMFEAVGMKVTYLKRIRMG 210
Query: 139 GFRLPSDLGIGMHVELKQSDL 159
+L L +G + L + ++
Sbjct: 211 SLKLDKALTLGAYRPLTEEEI 231
>gi|56420818|ref|YP_148136.1| ribosomal large subunit pseudouridine synthase B [Geobacillus
kaustophilus HTA426]
gi|261417880|ref|YP_003251562.1| pseudouridine synthase [Geobacillus sp. Y412MC61]
gi|297529548|ref|YP_003670823.1| pseudouridine synthase [Geobacillus sp. C56-T3]
gi|319767308|ref|YP_004132809.1| pseudouridine synthase [Geobacillus sp. Y412MC52]
gi|375009340|ref|YP_004982973.1| Pseudouridine synthase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|448238575|ref|YP_007402633.1| pseudouridine synthase [Geobacillus sp. GHH01]
gi|56380660|dbj|BAD76568.1| ribosomal large subunit pseudouridine synthaseB (pseudouridylate
synthase) (uracil hydrolyase) [Geobacillus kaustophilus
HTA426]
gi|261374337|gb|ACX77080.1| pseudouridine synthase [Geobacillus sp. Y412MC61]
gi|297252800|gb|ADI26246.1| pseudouridine synthase [Geobacillus sp. C56-T3]
gi|317112174|gb|ADU94666.1| pseudouridine synthase [Geobacillus sp. Y412MC52]
gi|359288189|gb|AEV19873.1| Pseudouridine synthase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|445207417|gb|AGE22882.1| pseudouridine synthase [Geobacillus sp. GHH01]
Length = 243
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 9/157 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D+ K DKR ++ +GRLD T+GL+++TNDGDFA + HP +++K YIA +
Sbjct: 86 DFFKDLDKR--------IYPIGRLDYDTSGLLLLTNDGDFANLLMHPRYEIEKVYIAKVK 137
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G L + +G +E P V+LL + I +HEGRN +VR + +
Sbjct: 138 GIPTHEQLKRLEQGVQLEDGMTAPAKVKLLSADRKKGTAIVEIRIHEGRNRQVRRMFEAI 197
Query: 126 GLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
G ++ LKR R L L G + EL ++KL+
Sbjct: 198 GCEVLKLKRERYAFLDLKG-LRPGEYRELTPHEVKLL 233
>gi|372269738|ref|ZP_09505786.1| pseudouridine synthase [Marinobacterium stanieri S30]
Length = 310
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L + R +GRLD+ TTGL+I T DG+ A + HPS ++ +EY + G V L
Sbjct: 95 PPLKQGRWVAIGRLDINTTGLLIFTTDGELANRMMHPSMQIDREYAVRVLGEVEDAMLTR 154
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
++EG ++E V + VV EGRN EVR L ++ G+++ LKR+
Sbjct: 155 LTEGVLLEDGMARFTDVRYFDGEG--ANKWYHCVVMEGRNREVRRLWESQGMQVNRLKRV 212
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLKLM 162
R G LPSD+ +G EL ++ L+
Sbjct: 213 RFGPVFLPSDVKVGTWRELGPKEVDLL 239
>gi|257453996|ref|ZP_05619272.1| RNA pseudouridine synthase family protein [Enhydrobacter aerosaccus
SK60]
gi|257448661|gb|EEV23628.1| RNA pseudouridine synthase family protein [Enhydrobacter aerosaccus
SK60]
Length = 287
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R VGRLD+ +TGL++ TNDG+ A + HPS+++++EY + G V
Sbjct: 92 ERLPPLNHDRWVMVGRLDINSTGLLLFTNDGELAHRLMHPSNEIEREYAVRVMGEVTPEI 151
Query: 73 LIAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
++ + G ++E G D+VE + ++ + EGRN EVR L ++ GLK+
Sbjct: 152 MLNLKRGVMLEDGMAQFDDIVE---KGGEGINKWYQVKLKEGRNREVRRLFESQGLKVSR 208
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDL 159
L R+R G LP +L G ++EL + ++
Sbjct: 209 LLRIRYGSVSLPRELRTGRYLELDRREI 236
>gi|388547812|ref|ZP_10151072.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas sp.
M47T1]
gi|388274101|gb|EIK93703.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas sp.
M47T1]
Length = 397
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 18 LPRPR---LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRPR +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPREGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E +++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQIAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G EL Q+++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWRELSQNEVDIL 253
>gi|347549348|ref|YP_004855676.1| hypothetical protein LIV_1929 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982419|emb|CBW86415.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 243
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 94 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRELERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 154 IDGRKTAPAKVKIRSSDKAKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLN 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 214 LRG-LNAGERRELSHHEVKQL 233
>gi|384210232|ref|YP_005595952.1| pseudouridine synthase [Brachyspira intermedia PWS/A]
gi|343387882|gb|AEM23372.1| pseudouridine synthase [Brachyspira intermedia PWS/A]
Length = 349
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLF GRLD + G++I+TNDG+FA ++HPS ++ K Y T++G ++ L+ S+G
Sbjct: 100 KERLFYAGRLDSESRGIMIITNDGEFANIITHPSYEILKVYDVTVNGKIDSEALLNASKG 159
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+ +P ++L + +IR+ ++EG+N E+R++ + G K+ L+R+ +G
Sbjct: 160 ITIKNVSYSPFKFKILSKGR--IQSKIRLTINEGKNREIRKIFDHLGYKVIDLERISVG 216
>gi|152974996|ref|YP_001374513.1| pseudouridine synthase [Bacillus cytotoxicus NVH 391-98]
gi|152023748|gb|ABS21518.1| pseudouridine synthase [Bacillus cytotoxicus NVH 391-98]
Length = 242
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A + G + + + +G +
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANILMHPKYKVEKTYVAKVKGPLTGEKIRMLEKGVI 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E +P V+++ +++ +HEGRN +VR + + G K+ LKR L
Sbjct: 154 LEDGKTSPARVKIISWDKRKEMSIVQLTIHEGRNRQVRRMFEAIGCKVMKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|322374684|ref|ZP_08049198.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
C300]
gi|406586885|ref|ZP_11061805.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD1S]
gi|419814574|ref|ZP_14339350.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD2S]
gi|419818637|ref|ZP_14342604.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD4S]
gi|321280184|gb|EFX57223.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
C300]
gi|404461552|gb|EKA07459.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD4S]
gi|404471636|gb|EKA16136.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD2S]
gi|404473627|gb|EKA17958.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD1S]
Length = 241
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 88 PDIQSDQLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGLLTSDHIQK 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++G C P +E+L P R I + EG+ H+V+++ + G+K+ +LKR
Sbjct: 148 FKDGIVFLDGITCKPAQLEILSSSP--TESRASITISEGKFHQVKKMFLSVGVKVTALKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L +L G + L +LK++
Sbjct: 206 VQFGDFTLDPELAKGQYRPLNPEELKII 233
>gi|92112979|ref|YP_572907.1| ribosomal large subunit pseudouridine synthase B [Chromohalobacter
salexigens DSM 3043]
gi|91796069|gb|ABE58208.1| ribosomal large subunit pseudouridine synthase B [Chromohalobacter
salexigens DSM 3043]
Length = 286
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R VGRLD+ T+GL++ T DG+ A + HP++++++EY + G V + H
Sbjct: 94 ERLPRLKGERWIAVGRLDINTSGLLLFTTDGELANRLMHPATQVEREYAVRVMGNVRQEH 153
Query: 73 LIAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
+ A+ EG ++E G DV E + +V+ EGRN EVR L ++ GL +
Sbjct: 154 VNAMVEGVMLEDGPARFTDVQEFGGEGINTW---FHVVILEGRNREVRRLWESQGLTVSR 210
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDL 159
LKR+R G L G VEL Q ++
Sbjct: 211 LKRVRYGNIFLDKRAKAGEWVELSQDEI 238
>gi|315282990|ref|ZP_07871273.1| ribosomal large subunit pseudouridine synthase B [Listeria marthii
FSL S4-120]
gi|313613361|gb|EFR87222.1| ribosomal large subunit pseudouridine synthase B [Listeria marthii
FSL S4-120]
Length = 244
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 94 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRQLERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 154 IDGRKTAPAKVKVRSSDKTKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLN 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 214 LRG-LNAGERRELSHHEVKQL 233
>gi|16803988|ref|NP_465473.1| hypothetical protein lmo1949 [Listeria monocytogenes EGD-e]
gi|46908183|ref|YP_014572.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes serotype 4b str. F2365]
gi|47093378|ref|ZP_00231145.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes str. 4b H7858]
gi|47097092|ref|ZP_00234662.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes str. 1/2a F6854]
gi|226224554|ref|YP_002758661.1| hypothetical protein Lm4b_01968 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254825555|ref|ZP_05230556.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL J1-194]
gi|254827166|ref|ZP_05231853.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL N3-165]
gi|254852851|ref|ZP_05242199.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL R2-503]
gi|254912507|ref|ZP_05262519.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes J2818]
gi|254931879|ref|ZP_05265238.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes HPB2262]
gi|254936834|ref|ZP_05268531.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes F6900]
gi|254992999|ref|ZP_05275189.1| hypothetical protein LmonocytoFSL_08071 [Listeria monocytogenes FSL
J2-064]
gi|255026085|ref|ZP_05298071.1| hypothetical protein LmonocytFSL_06510 [Listeria monocytogenes FSL
J2-003]
gi|255520090|ref|ZP_05387327.1| hypothetical protein LmonocFSL_02452 [Listeria monocytogenes FSL
J1-175]
gi|284802394|ref|YP_003414259.1| hypothetical protein LM5578_2150 [Listeria monocytogenes 08-5578]
gi|284995536|ref|YP_003417304.1| hypothetical protein LM5923_2101 [Listeria monocytogenes 08-5923]
gi|300763739|ref|ZP_07073736.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL N1-017]
gi|386044257|ref|YP_005963062.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes 10403S]
gi|386047601|ref|YP_005965933.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes J0161]
gi|386050925|ref|YP_005968916.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL R2-561]
gi|386054204|ref|YP_005971762.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes Finland 1998]
gi|386732691|ref|YP_006206187.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes 07PF0776]
gi|404281561|ref|YP_006682459.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2755]
gi|404284445|ref|YP_006685342.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2372]
gi|404287379|ref|YP_006693965.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|404411249|ref|YP_006696837.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC5850]
gi|404414027|ref|YP_006699614.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC7179]
gi|405750302|ref|YP_006673768.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes ATCC 19117]
gi|405753176|ref|YP_006676641.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2378]
gi|405756109|ref|YP_006679573.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2540]
gi|405758999|ref|YP_006688275.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2479]
gi|406704734|ref|YP_006755088.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes L312]
gi|417315593|ref|ZP_12102269.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes J1816]
gi|417318030|ref|ZP_12104628.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes J1-220]
gi|422810033|ref|ZP_16858444.1| Ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL J1-208]
gi|424823710|ref|ZP_18248723.1| Pseudouridine synthase [Listeria monocytogenes str. Scott A]
gi|16411402|emb|CAD00027.1| lmo1949 [Listeria monocytogenes EGD-e]
gi|46881453|gb|AAT04749.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes serotype 4b str. F2365]
gi|47014537|gb|EAL05500.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes str. 1/2a F6854]
gi|47018249|gb|EAL09015.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes str. 4b H7858]
gi|225877016|emb|CAS05725.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258599548|gb|EEW12873.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL N3-165]
gi|258606184|gb|EEW18792.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL R2-503]
gi|258609430|gb|EEW22038.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes F6900]
gi|284057956|gb|ADB68897.1| hypothetical protein LM5578_2150 [Listeria monocytogenes 08-5578]
gi|284061003|gb|ADB71942.1| hypothetical protein LM5923_2101 [Listeria monocytogenes 08-5923]
gi|293583430|gb|EFF95462.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes HPB2262]
gi|293590492|gb|EFF98826.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes J2818]
gi|293594796|gb|EFG02557.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL J1-194]
gi|300515475|gb|EFK42525.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL N1-017]
gi|328466297|gb|EGF37454.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes J1816]
gi|328472791|gb|EGF43640.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes J1-220]
gi|332312390|gb|EGJ25485.1| Pseudouridine synthase [Listeria monocytogenes str. Scott A]
gi|345534592|gb|AEO04033.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes J0161]
gi|345537491|gb|AEO06931.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes 10403S]
gi|346424771|gb|AEO26296.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL R2-561]
gi|346646855|gb|AEO39480.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes Finland 1998]
gi|378751697|gb|EHY62285.1| Ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL J1-208]
gi|384391449|gb|AFH80519.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes 07PF0776]
gi|404219502|emb|CBY70866.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes ATCC 19117]
gi|404222376|emb|CBY73739.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2378]
gi|404225309|emb|CBY76671.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2540]
gi|404228196|emb|CBY49601.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2755]
gi|404231075|emb|CBY52479.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC5850]
gi|404233947|emb|CBY55350.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2372]
gi|404236881|emb|CBY58283.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2479]
gi|404239726|emb|CBY61127.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC7179]
gi|404246308|emb|CBY04533.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|406361764|emb|CBY68037.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes L312]
gi|441471728|emb|CCQ21483.1| Ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes]
gi|441474860|emb|CCQ24614.1| Ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes N53-1]
Length = 244
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 94 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRQLERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 154 IDGRKTAPAKVKVRSSDKTKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLN 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 214 LRG-LNAGERRELSHHEVKQL 233
>gi|39938724|ref|NP_950490.1| 16S rRNA pseudouridylate synthase [Onion yellows phytoplasma OY-M]
gi|39721833|dbj|BAD04323.1| 16S rRNA pseudouridylate synthase [Onion yellows phytoplasma OY-M]
Length = 245
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD TTGL+++TNDGD Q ++HPS + KEY I+ + K+ L +G +
Sbjct: 95 RLYPIGRLDFNTTGLLLITNDGDLTQKLTHPSFCIPKEYHVKINACLQKKDLATFRKGII 154
Query: 82 IEGTHCT-PDVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+ + +++L P+P +++V+ EG+N +VR+++++ G ++ LKR R
Sbjct: 155 IDKNYLAFCKEIDILKSSYK-PKPSTWLKLVITEGKNRQVRKMMQSLGYQVLKLKRYRY- 212
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F +L IG + LK ++K
Sbjct: 213 SFLTIENLTIGAYRPLKIHEIK 234
>gi|313123424|ref|YP_004033683.1| pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312279987|gb|ADQ60706.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 241
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D LK D P VGRLD TTGL+++TNDG A + P + K Y A +
Sbjct: 85 DLLKDQDSYQKIAP------VGRLDKDTTGLLLLTNDGQLAHQLLAPEYHVPKPYYALLA 138
Query: 66 GAVNKRHLIAISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKN 124
G ++ AI+ G T+ +GT P +++L D + I I + EG+ H+V+ + +
Sbjct: 139 GVADEETAKAIAAGLTLKDGTELKPGQLKILRQDKDQEQSEIEITITEGKYHQVKRMFAS 198
Query: 125 AGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
G+K+ LKRL +G LP+DL G + L + +L
Sbjct: 199 QGMKVLKLKRLSMGPLTLPADLAPGSYRPLTEEEL 233
>gi|424714824|ref|YP_007015539.1| Ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes serotype 4b str. LL195]
gi|424014008|emb|CCO64548.1| Ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes serotype 4b str. LL195]
Length = 246
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 96 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRQLERGVV 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 156 IDGRKTAPAKVKVRSSDKTKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLN 215
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 216 LRG-LNAGERRELSHHEVKQL 235
>gi|227890506|ref|ZP_04008311.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius ATCC 11741]
gi|227867444|gb|EEJ74865.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius ATCC 11741]
Length = 238
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PG + LF VGRLD TTGL+I+TNDG FA + P + K Y A + G ++++ +
Sbjct: 91 PG-RKEDLFPVGRLDKDTTGLLIITNDGKFAHNIISPKKHVSKTYEAVVTGKISEKEVKI 149
Query: 76 ISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
S+G + G P ++++ ++R+++HEG+ H+VR + ++ L R
Sbjct: 150 FSQGMELANGDKLQPAQLDIISYSEKDDTSKVRVIIHEGKYHQVRRMFGAVSQRVLELDR 209
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++IG L L G + EL + +L L+
Sbjct: 210 VKIGLLELDDTLERGEYRELTEKELNLI 237
>gi|199598710|ref|ZP_03212124.1| 16S rRNA uridine-516 pseudouridylate synthase related enzyme
[Lactobacillus rhamnosus HN001]
gi|229552173|ref|ZP_04440898.1| pseudouridylate synthase [Lactobacillus rhamnosus LMS2-1]
gi|258508377|ref|YP_003171128.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus GG]
gi|258539588|ref|YP_003174087.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus Lc 705]
gi|385828046|ref|YP_005865818.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
gi|385835237|ref|YP_005873011.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus ATCC 8530]
gi|418070596|ref|ZP_12707871.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus R0011]
gi|423078082|ref|ZP_17066769.1| pseudouridine synthase B, ribosomal large subunit [Lactobacillus
rhamnosus ATCC 21052]
gi|199590398|gb|EDY98490.1| 16S rRNA uridine-516 pseudouridylate synthase related enzyme
[Lactobacillus rhamnosus HN001]
gi|229314475|gb|EEN80448.1| pseudouridylate synthase [Lactobacillus rhamnosus LMS2-1]
gi|257148304|emb|CAR87277.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus GG]
gi|257151264|emb|CAR90236.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus Lc 705]
gi|259649691|dbj|BAI41853.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
gi|355394728|gb|AER64158.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus ATCC 8530]
gi|357540016|gb|EHJ24033.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus R0011]
gi|357552462|gb|EHJ34235.1| pseudouridine synthase B, ribosomal large subunit [Lactobacillus
rhamnosus ATCC 21052]
Length = 248
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDG+ A + HP L+K+Y+A ++G N+ L + G
Sbjct: 98 RLYPVGRLDYDTSGLLVMTNDGELANHLMHPRYALEKKYVAKVEGIPNRPALAPLKTGVS 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P VE+L + + +H+G NH+V+++ K G + L R G
Sbjct: 158 IDGKMTAPAKVEILSTDKAKKTAIVALTIHQGMNHQVKKMFKAVGFPVIKLSREAYGNLT 217
Query: 142 LPSDLGIGMHVELKQSDL 159
L + L G H +K +L
Sbjct: 218 L-AGLQPGEHRPIKPQEL 234
>gi|417787967|ref|ZP_12435650.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius NIAS840]
gi|334308144|gb|EGL99130.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius NIAS840]
Length = 238
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PG + LF VGRLD TTGL+I+TNDG FA + P + K Y A + G ++++ +
Sbjct: 91 PG-RKEDLFPVGRLDKDTTGLLIITNDGKFAHNIISPKKHVSKTYEAVVTGKISEKEVKI 149
Query: 76 ISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
S+G + G P ++++ ++R+++HEG+ H+VR + ++ L R
Sbjct: 150 FSQGMELANGDKLQPAQLDIISYSEKDDTSKVRVIIHEGKYHQVRRMFGAVSQRVLELDR 209
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++IG L L G + EL + +L L+
Sbjct: 210 VKIGLLELDDTLERGEYRELTEKELNLI 237
>gi|125973211|ref|YP_001037121.1| ribosomal large subunit pseudouridine synthase B [Clostridium
thermocellum ATCC 27405]
gi|256003686|ref|ZP_05428674.1| pseudouridine synthase [Clostridium thermocellum DSM 2360]
gi|281417410|ref|ZP_06248430.1| pseudouridine synthase [Clostridium thermocellum JW20]
gi|385778879|ref|YP_005688044.1| pseudouridine synthase [Clostridium thermocellum DSM 1313]
gi|419723104|ref|ZP_14250239.1| pseudouridine synthase Rsu [Clostridium thermocellum AD2]
gi|419724992|ref|ZP_14252047.1| pseudouridine synthase Rsu [Clostridium thermocellum YS]
gi|125713436|gb|ABN51928.1| pseudouridine synthase [Clostridium thermocellum ATCC 27405]
gi|255992247|gb|EEU02341.1| pseudouridine synthase [Clostridium thermocellum DSM 2360]
gi|281408812|gb|EFB39070.1| pseudouridine synthase [Clostridium thermocellum JW20]
gi|316940559|gb|ADU74593.1| pseudouridine synthase [Clostridium thermocellum DSM 1313]
gi|380771612|gb|EIC05477.1| pseudouridine synthase Rsu [Clostridium thermocellum YS]
gi|380780871|gb|EIC10534.1| pseudouridine synthase Rsu [Clostridium thermocellum AD2]
Length = 239
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F VGRLD T+GL+++TNDGDFA ++HP +++K Y A + G +K ++ G
Sbjct: 95 KERIFPVGRLDYDTSGLLLLTNDGDFAYRLTHPKHEIKKVYEADLLGVPSKDDIMRFKNG 154
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+ +P E+L + D ++RI +HEG+N +VR++ G + LKR+ IG
Sbjct: 155 LWIDDYFTSPADFEIL--KSDGKTTKVRITIHEGKNRQVRKMCNKIGCPVIRLKRISIGE 212
Query: 140 FRL 142
L
Sbjct: 213 VSL 215
>gi|56963596|ref|YP_175327.1| ribosomal large subunit pseudouridine synthase B [Bacillus clausii
KSM-K16]
gi|56909839|dbj|BAD64366.1| ribosomal large subunit pseudouridine synthase B [Bacillus clausii
KSM-K16]
Length = 242
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 70/121 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD T+GL+++TNDG+FA + HP K++KEYIA + G ++ + + G V
Sbjct: 94 RIYPIGRLDYDTSGLLLLTNDGEFAHLLMHPRYKIEKEYIAKVKGIPERKRIKELETGIV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P ++L +R+++HEG+N +VR + + G + LKR R G
Sbjct: 154 LEDGKTAPAKAKVLSIDKKKQTAIVRLIIHEGKNRQVRRMFEAIGHPVVKLKRERYGFLT 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|315640594|ref|ZP_07895700.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
italicus DSM 15952]
gi|315483622|gb|EFU74112.1| ribosomal large subunit pseudouridine synthase B [Enterococcus
italicus DSM 15952]
Length = 236
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 73/121 (60%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD T+GL+++TNDG+F+Q ++HP ++++K+Y+A + G L ++ G
Sbjct: 94 RIYPIGRLDYNTSGLLLLTNDGEFSQLLTHPKNEIEKKYVAKVKGVALPHALKPLTRGLK 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+G P ++L +++ +HEG+NH+V+ +++ GL + LKR + G
Sbjct: 154 YKGEKYAPAKYDILSTDTRAETSIVQLTIHEGKNHQVKNMLEAVGLPVQKLKREQYGNLT 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|222151389|ref|YP_002560545.1| ribosomal large subunit pseudouridine synthase B [Macrococcus
caseolyticus JCSC5402]
gi|222120514|dbj|BAH17849.1| ribosomal large subunit pseudouridine synthase B [Macrococcus
caseolyticus JCSC5402]
Length = 245
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PGL R+F VGRLD T+GL+++TNDGDFA ++HP K++K+Y+A + G + + +
Sbjct: 93 PGL-NLRIFPVGRLDYDTSGLLLLTNDGDFANQMTHPKYKMKKKYVAKLKGFLLREQVKQ 151
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G ++E P +V++ + + I ++EGRN +VR + + G ++ L R+
Sbjct: 152 LEKGIMLEDGKTAPALVKVKSQDKEKNTTLVEITIYEGRNRQVRRMFAHFGHEVVKLSRI 211
Query: 136 RIGGFRL 142
G L
Sbjct: 212 EYGPLTL 218
>gi|15900581|ref|NP_345185.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae TIGR4]
gi|111658681|ref|ZP_01409324.1| hypothetical protein SpneT_02000187 [Streptococcus pneumoniae
TIGR4]
gi|418129850|ref|ZP_12766734.1| hypothetical protein SPAR14_0637 [Streptococcus pneumoniae GA07643]
gi|418186691|ref|ZP_12823221.1| hypothetical protein SPAR92_0658 [Streptococcus pneumoniae GA47360]
gi|418229420|ref|ZP_12856029.1| hypothetical protein SPAR136_0668 [Streptococcus pneumoniae
EU-NP01]
gi|419477349|ref|ZP_14017174.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA18068]
gi|421242676|ref|ZP_15699198.1| hypothetical protein AMCSP09_000905 [Streptococcus pneumoniae
2081074]
gi|421246934|ref|ZP_15703422.1| hypothetical protein AMCSP18_000877 [Streptococcus pneumoniae
2082170]
gi|421270105|ref|ZP_15720962.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR48]
gi|14972155|gb|AAK74825.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae TIGR4]
gi|353803142|gb|EHD83434.1| hypothetical protein SPAR14_0637 [Streptococcus pneumoniae GA07643]
gi|353853277|gb|EHE33260.1| hypothetical protein SPAR92_0658 [Streptococcus pneumoniae GA47360]
gi|353890559|gb|EHE70322.1| hypothetical protein SPAR136_0668 [Streptococcus pneumoniae
EU-NP01]
gi|379566731|gb|EHZ31718.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA18068]
gi|395609996|gb|EJG70077.1| hypothetical protein AMCSP09_000905 [Streptococcus pneumoniae
2081074]
gi|395615090|gb|EJG75107.1| hypothetical protein AMCSP18_000877 [Streptococcus pneumoniae
2082170]
gi|395870757|gb|EJG81870.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR48]
Length = 241
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++ T C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDDTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|315303907|ref|ZP_07874374.1| ribosomal large subunit pseudouridine synthase B, partial [Listeria
ivanovii FSL F6-596]
gi|313627724|gb|EFR96390.1| ribosomal large subunit pseudouridine synthase B [Listeria ivanovii
FSL F6-596]
Length = 217
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 68 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVAKTYIARIKGIPEREVIRELERGVV 127
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 128 IDGRKTAPAKVKIRSSDKAKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLN 187
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 188 LRG-LNAGERRELSHHEVKQL 207
>gi|225870791|ref|YP_002746738.1| ribosomal small subunit pseudouridine synthase B [Streptococcus
equi subsp. equi 4047]
gi|225700195|emb|CAW94370.1| putative ribosomal small subunit pseudouridine synthase B
[Streptococcus equi subsp. equi 4047]
Length = 237
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 78/140 (55%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD T GL++VTNDG A A+ P + K+Y+A +DG + + + ++G +
Sbjct: 96 VFPVGRLDKDTHGLLLVTNDGKLAHALLSPKKHVAKQYLAVVDGMMTQEDVKHFAQGITL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +++L + ++I + EG+ H+V+ +V G + L+R+ +G +L
Sbjct: 156 KDHQCMPAHLDILEINESLKTSLVKITIEEGKFHQVKRMVAACGKTVSDLQRISMGPLQL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
S L G + L ++L+ +
Sbjct: 216 DSALAPGAYRRLTAAELEAL 235
>gi|149002375|ref|ZP_01827317.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP14-BS69]
gi|149005797|ref|ZP_01829536.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP18-BS74]
gi|237650299|ref|ZP_04524551.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae CCRI 1974]
gi|237821983|ref|ZP_04597828.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae CCRI 1974M2]
gi|307126876|ref|YP_003878907.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 670-6B]
gi|417676442|ref|ZP_12325855.1| hypothetical protein SPAR148_0640 [Streptococcus pneumoniae
GA17545]
gi|418086411|ref|ZP_12723582.1| hypothetical protein SPAR87_0188 [Streptococcus pneumoniae GA47033]
gi|418095784|ref|ZP_12732900.1| hypothetical protein SPAR40_0712 [Streptococcus pneumoniae GA16531]
gi|418132348|ref|ZP_12769223.1| hypothetical protein SPAR22_0928 [Streptococcus pneumoniae GA11304]
gi|418143501|ref|ZP_12780301.1| hypothetical protein SPAR31_0683 [Streptococcus pneumoniae GA13494]
gi|418154722|ref|ZP_12791453.1| hypothetical protein SPAR39_0679 [Streptococcus pneumoniae GA16242]
gi|418201964|ref|ZP_12838395.1| hypothetical protein SPAR115_0679 [Streptococcus pneumoniae
GA52306]
gi|418225115|ref|ZP_12851744.1| hypothetical protein SPAR141_0641 [Streptococcus pneumoniae NP112]
gi|419455078|ref|ZP_13995038.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP04]
gi|419457840|ref|ZP_13997784.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02254]
gi|419525427|ref|ZP_14064992.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA14373]
gi|421285373|ref|ZP_15736150.1| pseudouridine synthase [Streptococcus pneumoniae GA60190]
gi|421298144|ref|ZP_15748834.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
gi|147759690|gb|EDK66681.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP14-BS69]
gi|147762737|gb|EDK69697.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP18-BS74]
gi|306483938|gb|ADM90807.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae 670-6B]
gi|332077107|gb|EGI87569.1| hypothetical protein SPAR148_0640 [Streptococcus pneumoniae
GA17545]
gi|353759674|gb|EHD40257.1| hypothetical protein SPAR87_0188 [Streptococcus pneumoniae GA47033]
gi|353772564|gb|EHD53070.1| hypothetical protein SPAR40_0712 [Streptococcus pneumoniae GA16531]
gi|353808014|gb|EHD88283.1| hypothetical protein SPAR22_0928 [Streptococcus pneumoniae GA11304]
gi|353809242|gb|EHD89502.1| hypothetical protein SPAR31_0683 [Streptococcus pneumoniae GA13494]
gi|353823014|gb|EHE03189.1| hypothetical protein SPAR39_0679 [Streptococcus pneumoniae GA16242]
gi|353868646|gb|EHE48532.1| hypothetical protein SPAR115_0679 [Streptococcus pneumoniae
GA52306]
gi|353882423|gb|EHE62234.1| hypothetical protein SPAR141_0641 [Streptococcus pneumoniae NP112]
gi|379531713|gb|EHY96947.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02254]
gi|379559818|gb|EHZ24845.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA14373]
gi|379629535|gb|EHZ94129.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP04]
gi|395887352|gb|EJG98367.1| pseudouridine synthase [Streptococcus pneumoniae GA60190]
gi|395903647|gb|EJH14575.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
Length = 241
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVQVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSFSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|169350449|ref|ZP_02867387.1| hypothetical protein CLOSPI_01217 [Clostridium spiroforme DSM 1552]
gi|169292769|gb|EDS74902.1| pseudouridylate synthase [Clostridium spiroforme DSM 1552]
Length = 239
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G LF VGRLD+ T GL++++NDGDFA + P+ K Y+A I G +N+ ++A
Sbjct: 91 GYENYDLFPVGRLDIDTEGLLLISNDGDFAHRLMSPNRNHAKVYVARIAGIMNEFDILAF 150
Query: 77 SEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+G +++ G C P +++L D + I + EG+ H+V+++V+ K+ LKR+
Sbjct: 151 KDGVILDNGYKCKPANLKILEVFDD--SCEVEIEIFEGKFHQVKKMVEACNKKVTYLKRI 208
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
I G + L +G EL + +
Sbjct: 209 SIKGLTIDRSLQLGDFRELTKEEF 232
>gi|419778071|ref|ZP_14303973.1| pseudouridylate synthase [Streptococcus oralis SK10]
gi|383187824|gb|EIC80268.1| pseudouridylate synthase [Streptococcus oralis SK10]
Length = 241
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +++ VGRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 88 PDIQSDKIYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGPLTSDHIQK 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +E+L P R I + EG+ H+V+++ + G+K+ +LKR
Sbjct: 148 FKDGIVFLDGTTCKPAQLEILSASP--TESRASITISEGKFHQVKKMFLSVGVKVTALKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L +L G + L +L+++
Sbjct: 206 VQFGDFTLDPELAEGHYRPLNPEELEII 233
>gi|217963899|ref|YP_002349577.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes HCC23]
gi|290892109|ref|ZP_06555105.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL J2-071]
gi|386008721|ref|YP_005926999.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes L99]
gi|386027329|ref|YP_005948105.1| putative 23S RNA-specific pseudouridine synthase B [Listeria
monocytogenes M7]
gi|404408394|ref|YP_006691109.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2376]
gi|422410206|ref|ZP_16487167.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL F2-208]
gi|217333169|gb|ACK38963.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes HCC23]
gi|290558232|gb|EFD91750.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL J2-071]
gi|307571531|emb|CAR84710.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes L99]
gi|313607907|gb|EFR84057.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes FSL F2-208]
gi|336023910|gb|AEH93047.1| putative 23S RNA-specific pseudouridine synthase B [Listeria
monocytogenes M7]
gi|404242543|emb|CBY63943.1| ribosomal large subunit pseudouridine synthase B [Listeria
monocytogenes SLCC2376]
Length = 244
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 94 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRQLERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 154 IDGRKTAPAKVKVRSSDKAKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLN 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 214 LRG-LNAGERRELSHHEVKQL 233
>gi|421306855|ref|ZP_15757501.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
gi|395908818|gb|EJH19695.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
Length = 241
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVQVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSFSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|319785914|ref|YP_004145389.1| pseudouridine synthase [Pseudoxanthomonas suwonensis 11-1]
gi|317464426|gb|ADV26158.1| pseudouridine synthase [Pseudoxanthomonas suwonensis 11-1]
Length = 236
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
P L TVGRLD TTGL+++T+DG + P SKL K Y A + + + GT
Sbjct: 93 PVLSTVGRLDRETTGLLLMTDDGQLLHRIVSPKSKLAKVYEADLAEDLRGDEAQLFASGT 152
Query: 81 VIEGTHCTPDVVELLPPQPDIPRP-RIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++ + TP LLP Q ++ P R R+V+HEGR H+VR + G + +L R RIGG
Sbjct: 153 LMLESETTP----LLPAQMEVLGPRRARVVLHEGRYHQVRRMFAAVGNNVVALHRPRIGG 208
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L DL G +L Q DL ++
Sbjct: 209 LAL-GDLAEGQWRQLGQDDLDVL 230
>gi|148997238|ref|ZP_01824892.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP11-BS70]
gi|168575350|ref|ZP_02721286.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae MLV-016]
gi|307067298|ref|YP_003876264.1| 16S rRNA uridine-516 pseudouridylate synthase-like pseudouridylate
synthase [Streptococcus pneumoniae AP200]
gi|419470656|ref|ZP_14010515.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA07914]
gi|419492822|ref|ZP_14032549.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47210]
gi|419503507|ref|ZP_14043178.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47760]
gi|421313867|ref|ZP_15764457.1| pseudouridine synthase [Streptococcus pneumoniae GA47562]
gi|147756938|gb|EDK63978.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP11-BS70]
gi|183578472|gb|EDT99000.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae MLV-016]
gi|306408835|gb|ADM84262.1| 16S rRNA uridine-516 pseudouridylate synthase-like pseudouridylate
synthase [Streptococcus pneumoniae AP200]
gi|379545372|gb|EHZ10511.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA07914]
gi|379594860|gb|EHZ59669.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47210]
gi|379609105|gb|EHZ73846.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47760]
gi|395914367|gb|EJH25211.1| pseudouridine synthase [Streptococcus pneumoniae GA47562]
Length = 241
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ LKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTILKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|225868275|ref|YP_002744223.1| ribosomal small subunit pseudouridine synthase B [Streptococcus
equi subsp. zooepidemicus]
gi|225701551|emb|CAW98765.1| putative ribosomal small subunit pseudouridine synthase B
[Streptococcus equi subsp. zooepidemicus]
Length = 237
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 78/140 (55%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD T GL+++TNDG A A+ P + K+Y+A +DG + + + ++G +
Sbjct: 96 VFPVGRLDKDTHGLLLLTNDGKLAHALLSPKKHVAKQYLAKVDGTMTQEDVKHFAQGITL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +++L + ++I + EG+ H+V+ +V G + L+R+ +G +L
Sbjct: 156 KDHQCMPAYLDILEINESLKTSLVKITIEEGKFHQVKRMVAACGKTVSDLQRISMGPLQL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
S L G + L ++L+ +
Sbjct: 216 DSALAPGAYRRLTAAELETL 235
>gi|116873391|ref|YP_850172.1| ribosomal large subunit pseudouridine synthase B [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|116742269|emb|CAK21393.1| ribosomal large subunit pseudouridine synthase B [Listeria
welshimeri serovar 6b str. SLCC5334]
Length = 244
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 94 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRELERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 154 IDGRKTAPAKVKVRSSDKAKNKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLN 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 214 LRG-LNAGERRELSHHEVKQL 233
>gi|421768978|ref|ZP_16205687.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus LRHMDP2]
gi|421771241|ref|ZP_16207901.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus LRHMDP3]
gi|411185374|gb|EKS52502.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus LRHMDP2]
gi|411185827|gb|EKS52953.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
rhamnosus LRHMDP3]
Length = 248
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RL+ VGRLD T+GL+++TNDG+ A + HP L+K+Y+A ++G N+ L + G
Sbjct: 96 QERLYPVGRLDYDTSGLLVMTNDGELANHLMHPRYALEKKYVAKVEGIPNRPALAPLKTG 155
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P VE+L + + +H+G NH+V+++ K G + L R G
Sbjct: 156 VSIDGKMTAPAKVEILSTDKAKKTAIVALTIHQGMNHQVKKMFKAVGFPVIKLSREAYGN 215
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L + L G H +K +L
Sbjct: 216 LTL-AGLQPGEHRPIKPQEL 234
>gi|385260245|ref|ZP_10038394.1| pseudouridylate synthase [Streptococcus sp. SK140]
gi|385192165|gb|EIF39575.1| pseudouridylate synthase [Streptococcus sp. SK140]
Length = 241
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L +L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 90 LQSEQLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVNKTYQVEVNGPLTSDHIQEFK 149
Query: 78 EGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+G V ++GT C P +E+L PD+ R I I EG+ H+V+++ + G+K+ +LKR++
Sbjct: 150 DGIVFLDGTVCKPAQLEILSSSPDLSRATITI--SEGKFHQVKKMFLSVGVKVTALKRVQ 207
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G F L +L G L + +L+++
Sbjct: 208 FGDFLLDPELAEGDCRLLNKEELQVI 233
>gi|421240250|ref|ZP_15696799.1| hypothetical protein AMCSP17_000648 [Streptococcus pneumoniae
2080913]
gi|395609808|gb|EJG69893.1| hypothetical protein AMCSP17_000648 [Streptococcus pneumoniae
2080913]
Length = 241
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ LKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTILKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + L Q +L+++
Sbjct: 212 TLNPDLAEGNYRPLNQKELQII 233
>gi|403667507|ref|ZP_10932812.1| ribosomal large subunit pseudouridine synthase B [Kurthia sp. JC8E]
Length = 243
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTG++++TNDG+F+ ++HP ++K Y+AT+ G + + + + G +
Sbjct: 94 RIFPVGRLDFDTTGVLLLTNDGEFSNVLTHPKYNVEKTYVATLQGVLKREEMRKLERGVM 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V ++ + + I +HEG+N +VR + + G ++ LKR + GF
Sbjct: 154 LEDGKTAPARVRIISSDDRKGKTIVAITIHEGKNRQVRRMFEAVGHRVSKLKREQF-GFL 212
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L G EL ++K +
Sbjct: 213 TTMGLNAGEWRELTPHEVKQL 233
>gi|404418710|ref|ZP_11000477.1| ribosomal large subunit pseudouridine synthase B [Staphylococcus
arlettae CVD059]
gi|403489303|gb|EJY94881.1| ribosomal large subunit pseudouridine synthase B [Staphylococcus
arlettae CVD059]
Length = 244
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 8/141 (5%)
Query: 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYI 61
++ DY K D R++ VGRLD T+GL+++TNDG+F ++HP K+QK+Y+
Sbjct: 86 TVVTDYFKELD--------TRIYPVGRLDYDTSGLLLLTNDGEFTNLMTHPRYKIQKKYV 137
Query: 62 ATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVREL 121
A + G + + + A+ +G ++E P +V++ + + I + EGRN +VR +
Sbjct: 138 AKLKGYLMREEVKALEKGIMLEDGLTQPAIVKVKNQDKEKNTTLVEITIAEGRNRQVRRM 197
Query: 122 VKNAGLKLYSLKRLRIGGFRL 142
++ G + L+R+ G L
Sbjct: 198 FEHFGHTISKLQRIEFGPLNL 218
>gi|16801129|ref|NP_471397.1| hypothetical protein lin2063 [Listeria innocua Clip11262]
gi|422413494|ref|ZP_16490453.1| ribosomal large subunit pseudouridine synthase B [Listeria innocua
FSL S4-378]
gi|423098855|ref|ZP_17086563.1| pseudouridine synthase B, ribosomal large subunit [Listeria innocua
ATCC 33091]
gi|16414564|emb|CAC97293.1| lin2063 [Listeria innocua Clip11262]
gi|313618115|gb|EFR90216.1| ribosomal large subunit pseudouridine synthase B [Listeria innocua
FSL S4-378]
gi|370794682|gb|EHN62445.1| pseudouridine synthase B, ribosomal large subunit [Listeria innocua
ATCC 33091]
Length = 244
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 94 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRELERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 154 IDGRKTAPAKVKVRSSDKAKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLAREEYSFLN 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 214 LRG-LNAGERRELSHHEVKQL 233
>gi|395242891|ref|ZP_10419879.1| Pseudouridine synthase [Lactobacillus hominis CRBIP 24.179]
gi|394484711|emb|CCI80887.1| Pseudouridine synthase [Lactobacillus hominis CRBIP 24.179]
Length = 239
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 26 VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI-EG 84
VGRLD TTGL+I+TNDG F + P+ + K Y A I G ++ + +EG + +G
Sbjct: 98 VGRLDKDTTGLLIITNDGQFTHELLAPNKHVDKVYWAKIAGVADENTVNKFAEGLELGDG 157
Query: 85 THCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPS 144
T P +E+L D I I + EG+ H+++ + + G+++ LKRL +G +L
Sbjct: 158 TQLKPAKLEILKQDIDRDSSEIEITISEGKYHQIKRMFASLGMQVVELKRLSMGSLKLDD 217
Query: 145 DLGIGMHVELKQSDLKLMGWKS 166
L G + EL +D +L G K+
Sbjct: 218 SLQRGQYREL--TDEELAGLKN 237
>gi|159486376|ref|XP_001701217.1| hypothetical protein CHLREDRAFT_179001 [Chlamydomonas reinhardtii]
gi|158271917|gb|EDO97727.1| predicted protein [Chlamydomonas reinhardtii]
Length = 235
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 20 RPRLFTVGRLDVATTGLIIV-TNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
RPRL V +A G+ +G A + L KE T+D A +K + S
Sbjct: 46 RPRLAKV----LAACGVASRRACEGLIADGRVRVNGNLVKEQGTTVDPARDKVEVFR-SP 100
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+ GT +P VE+L PR R+RIVV EG+ HEVRELVK AG+ L SL+R+RIG
Sbjct: 101 DAAVAGTFVSPLEVEVLGD----PR-RLRIVVAEGKKHEVRELVKAAGMNLLSLRRVRIG 155
Query: 139 GFRLPSDLGIGMHVELKQSDLKLM 162
GFRLP DLG+G L +DLKL+
Sbjct: 156 GFRLPRDLGLGGFKALTPADLKLI 179
>gi|118369895|ref|XP_001018150.1| conserved hypothetical protein [Tetrahymena thermophila]
gi|89299917|gb|EAR97905.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
Length = 484
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 15 NPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
N + P + VGRLD + GLI++TNDGD AQ + P S + ++Y + G +++R L+
Sbjct: 269 NTKIKEPHIIAVGRLDYNSEGLILLTNDGDIAQCLEQPESNIYRQYRVRVQGELDERKLL 328
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ +GTVI G P VE+ Q + + ++ G+N E+R++++ L++ LKR
Sbjct: 329 KLRQGTVINGVQYGPFNVEIDKRQS--SNTWLTVGLYTGKNREIRKVMQKFDLRVSRLKR 386
Query: 135 LRIGGFRLPSDL 146
L G +++ S L
Sbjct: 387 LSYGPYKIGSML 398
>gi|418961058|ref|ZP_13512945.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius SMXD51]
gi|380344725|gb|EIA33071.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius SMXD51]
Length = 241
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PG + LF VGRLD TTGL+I+TNDG FA + P + K Y A + G ++++ +
Sbjct: 94 PG-RKEDLFPVGRLDKDTTGLLIITNDGKFAHNIISPKKHVSKTYEAIVTGKISEKEVKI 152
Query: 76 ISEGT-VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
S+G + G P ++++ ++R+++HEG+ H+VR + ++ L R
Sbjct: 153 FSQGMELANGDKLQPAQLDIISYSEKDDTSKVRVIIHEGKYHQVRRMFGAVSQRVLELDR 212
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++IG L L G + EL + +L L+
Sbjct: 213 VKIGLLELDDTLERGEYRELTEKELNLI 240
>gi|417810660|ref|ZP_12457339.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius GJ-24]
gi|335349456|gb|EGM50956.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
salivarius GJ-24]
Length = 238
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PG + LF VGRLD TTGL+I+TNDG FA + P + K Y A + G ++++ +
Sbjct: 91 PG-RKEDLFPVGRLDKDTTGLLIITNDGKFAHNIISPKKHVSKTYEAIVTGKISEKEVKI 149
Query: 76 ISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
S+G + G P ++++ ++R+++HEG+ H+VR + ++ L R
Sbjct: 150 FSQGMELANGDKLQPAQLDIISYSEKDDTSKVRVIIHEGKYHQVRRMFGAVSQRVLELDR 209
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++IG L L G + EL + +L L+
Sbjct: 210 VKIGLLELDDTLERGEYRELTEKELNLI 237
>gi|414158122|ref|ZP_11414416.1| pseudouridine synthase [Streptococcus sp. F0441]
gi|410870667|gb|EKS18624.1| pseudouridine synthase [Streptococcus sp. F0441]
Length = 241
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 88 PDIQSDQLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVKVNGLITPDHIQK 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +E+L P I + EG+ H+V+++ + G+K+ +LKR
Sbjct: 148 FKDGIVFLDGTLCKPAKLEILSASP--TESHASITISEGKFHQVKKMFLSVGVKVTALKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L S+L G + L +L+++
Sbjct: 206 VQFGDFTLNSELSEGQYRPLNPEELEII 233
>gi|422416470|ref|ZP_16493427.1| ribosomal large subunit pseudouridine synthase B [Listeria innocua
FSL J1-023]
gi|313623106|gb|EFR93379.1| ribosomal large subunit pseudouridine synthase B [Listeria innocua
FSL J1-023]
Length = 244
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGDFA + HP +++ K YIA I G + + + G V
Sbjct: 94 RLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRELERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V++ + + I +HEGRN +VR++ + G ++ L R
Sbjct: 154 IDGRKTAPAKVKVRSSDKAKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLAREEYSFLN 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++K +
Sbjct: 214 LRG-LNAGERRELSHHEVKQL 233
>gi|254283917|ref|ZP_04958885.1| ribosomal large subunit pseudouridine synthase B [gamma
proteobacterium NOR51-B]
gi|219680120|gb|EED36469.1| ribosomal large subunit pseudouridine synthase B [gamma
proteobacterium NOR51-B]
Length = 265
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R +GRLD T+GL++ T DG+ A + HPSS++ +EY+ + G V+ L
Sbjct: 73 PALNNGRWIVIGRLDYTTSGLLLFTTDGELANGLMHPSSEIDREYLVRVMGEVDDAMLDR 132
Query: 76 ISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ +G ++ +G D+ E D +V+ EGRN EVR L ++ GL + LKR
Sbjct: 133 LRQGVLLDDGPARFTDIQE---GGGDGINRWFYVVLMEGRNREVRRLWESQGLTVSRLKR 189
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G +PS L G +EL + D++++
Sbjct: 190 VRFGEVFIPSKLKKGQWMELPEKDVEVL 217
>gi|148989054|ref|ZP_01820454.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP6-BS73]
gi|147925551|gb|EDK76628.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP6-BS73]
Length = 241
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVQVNGLLTPDHIQTFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTICKPARLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSD 158
L DL G + L Q +
Sbjct: 212 TLNPDLAEGNYRPLNQKE 229
>gi|406977723|gb|EKD99830.1| ribosomal large subunit pseudouridine synthase B [uncultured
bacterium]
Length = 227
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
LF +GRLD+ T GL+++TNDGDF+ ++HP +++KEY I+G + I +G
Sbjct: 97 LFPIGRLDIDTEGLLMLTNDGDFSYKLTHPKFEVEKEYYVLINGKLGLAEQREIEKGIKT 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+P +++L P + +++HEG+N E++ + + G K+ LKR+R+ + L
Sbjct: 157 PDLTTSPARIKILRSTPR--ETSLSMIIHEGQNREIKRIFAHFGYKVAYLKRIRVANYEL 214
Query: 143 PSDLGIGMHVEL 154
DL G +V+L
Sbjct: 215 -GDLPTGQYVKL 225
>gi|381182406|ref|ZP_09891215.1| ribosomal large subunit pseudouridine synthase B [Listeriaceae
bacterium TTU M1-001]
gi|380317714|gb|EIA21024.1| ribosomal large subunit pseudouridine synthase B [Listeriaceae
bacterium TTU M1-001]
Length = 246
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDG+FA + HP K++K YIA + G K L + G V
Sbjct: 94 RLYPVGRLDYETSGLLLMTNDGEFANLLMHPKFKVEKRYIARLKGIPEKVRLRQLERGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
I+G P V++ + + I++HEGRN +VR++ + G + L R
Sbjct: 154 IDGKKTAPAKVKMRSFDKGKNKAIVEIIIHEGRNRQVRKMFEAIGYPVQKLSR 206
>gi|303229867|ref|ZP_07316643.1| pseudouridine synthase B, ribosomal large subunit [Veillonella
atypica ACS-134-V-Col7a]
gi|303232045|ref|ZP_07318748.1| pseudouridine synthase B, ribosomal large subunit [Veillonella
atypica ACS-049-V-Sch6]
gi|401679930|ref|ZP_10811854.1| pseudouridine synthase B, ribosomal large subunit [Veillonella sp.
ACP1]
gi|302513151|gb|EFL55190.1| pseudouridine synthase B, ribosomal large subunit [Veillonella
atypica ACS-049-V-Sch6]
gi|302515423|gb|EFL57389.1| pseudouridine synthase B, ribosomal large subunit [Veillonella
atypica ACS-134-V-Col7a]
gi|400219057|gb|EJO49928.1| pseudouridine synthase B, ribosomal large subunit [Veillonella sp.
ACP1]
Length = 241
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 8/137 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY+K+ +KR R++ +GRLD+ T GL+++TNDG+ AQ ++HPS ++K Y I
Sbjct: 87 DYIKN-EKR-------RIYPIGRLDLHTEGLLLLTNDGELAQNLTHPSKGVEKTYEVRIK 138
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G VN L I++G +E P + L + I +HEGRN +VR + ++
Sbjct: 139 GRVNDTDLQVIADGVPLEDGVTAPATLVDLGFDDHNGVHEVEITIHEGRNRQVRRMFEHF 198
Query: 126 GLKLYSLKRLRIGGFRL 142
G ++++LKR+ GG L
Sbjct: 199 GYRIHNLKRIAYGGLTL 215
>gi|331266782|ref|YP_004326412.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
oralis Uo5]
gi|419782983|ref|ZP_14308779.1| pseudouridylate synthase [Streptococcus oralis SK610]
gi|326683454|emb|CBZ01072.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
oralis Uo5]
gi|383182717|gb|EIC75267.1| pseudouridylate synthase [Streptococcus oralis SK610]
Length = 241
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 88 PDIKSYQLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQMVVNGPLTSEHIQK 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +E+L P I + EG+ H+++++ + G+K+ SLKR
Sbjct: 148 FKDGIVFLDGTTCKPAQLEILSSSP--TESHASITISEGKFHQIKKMFLSVGVKVTSLKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L +L G L +L+L+
Sbjct: 206 VQFGDFTLDPELSEGQFRSLNPEELELI 233
>gi|429759348|ref|ZP_19291847.1| pseudouridine synthase B, ribosomal large subunit [Veillonella
atypica KON]
gi|429179624|gb|EKY20863.1| pseudouridine synthase B, ribosomal large subunit [Veillonella
atypica KON]
Length = 252
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 8/137 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY+K+ +KR R++ +GRLD+ T GL+++TNDG+ AQ ++HPS ++K Y I
Sbjct: 98 DYIKN-EKR-------RIYPIGRLDLHTEGLLLLTNDGELAQNLTHPSKGVEKTYEVRIK 149
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G VN L I++G +E P + L + I +HEGRN +VR + ++
Sbjct: 150 GRVNDTDLQVIADGVPLEDGVTAPATLVDLGFDDHNGVHEVEITIHEGRNRQVRRMFEHF 209
Query: 126 GLKLYSLKRLRIGGFRL 142
G ++++LKR+ GG L
Sbjct: 210 GYRIHNLKRIAYGGLTL 226
>gi|402836598|ref|ZP_10885134.1| pseudouridylate synthase [Mogibacterium sp. CM50]
gi|402271074|gb|EJU20330.1| pseudouridylate synthase [Mogibacterium sp. CM50]
Length = 234
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD T+GL+I+TNDGD A + HPS +L+K Y A + G + + + G
Sbjct: 94 RIFPVGRLDYNTSGLLILTNDGDVANKLMHPSKELEKTYRAVVSGILTCGKIARLECGVN 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I G +P VE+ + + + I +HEG+NH+VR + K G + L+R+RIG
Sbjct: 154 IGGFKTSPAKVEV--RKHNKKSTVVDITIHEGKNHQVRRMFKAVGAPVQELQRIRIGKLV 211
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
+ L IG + +L ++++ +
Sbjct: 212 I-GRLAIGGYRKLGPAEVEYL 231
>gi|313884122|ref|ZP_07817888.1| pseudouridine synthase B, ribosomal large subunit [Eremococcus
coleocola ACS-139-V-Col8]
gi|312620569|gb|EFR31992.1| pseudouridine synthase B, ribosomal large subunit [Eremococcus
coleocola ACS-139-V-Col8]
Length = 236
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 79/142 (55%), Gaps = 12/142 (8%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY K D+R ++ +GRLD TTGL+++TNDG+FA + HP ++ K Y+A +D
Sbjct: 86 DYFKHIDQR--------IYPIGRLDFDTTGLLLLTNDGEFANQLMHPRYQVDKVYVAKLD 137
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
++K L + G +I+G + ++L + +++ +HEG NH+V+++ +
Sbjct: 138 KILDKEALRKLERGIIIDGKKTSKARAKVLDTNLEKKMSVVQLTIHEGWNHQVKKMFEAV 197
Query: 126 GLKLYSLKRLRIGGFRLPSDLG 147
G + LKR + G P +LG
Sbjct: 198 GAHVVKLKREKFG----PLNLG 215
>gi|333998120|ref|YP_004530732.1| RNA pseudouridylate synthase family protein [Treponema primitia
ZAS-2]
gi|333741175|gb|AEF86665.1| RNA pseudouridylate synthase family protein [Treponema primitia
ZAS-2]
Length = 280
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 7/161 (4%)
Query: 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYI 61
S FD + K LP+ RL+ VGRLD ++GLII TNDGDFA +SHPS++++KEY+
Sbjct: 117 SAFDPQGRPLAKDLLPLPQERLYNVGRLDYRSSGLIIFTNDGDFAAKISHPSAEIEKEYL 176
Query: 62 ATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVREL 121
G + + G +EG +E R IR+V+ EG+N E+R +
Sbjct: 177 VEATGPIPDLMVEEFKRGLEVEGVFYKAAEIE------RQGRKAIRVVLIEGKNREIRRV 230
Query: 122 VKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+ L L R+RIG L ++L G L + +++++
Sbjct: 231 FTHFHLHPAKLHRIRIGPVLL-TNLKAGESRPLTEQEIQIL 270
>gi|88705955|ref|ZP_01103663.1| ribosomal large subunit pseudouridine synthase B (Pseudouridylate
synthase) [Congregibacter litoralis KT71]
gi|88699669|gb|EAQ96780.1| ribosomal large subunit pseudouridine synthase B (Pseudouridylate
synthase) [Congregibacter litoralis KT71]
Length = 332
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P + R ++GRLD T+GL++ T DG+ A A+ HPS+ +++EY+ + G V + H
Sbjct: 106 ERLPKVKSGRWISIGRLDYNTSGLLLFTTDGELANALMHPSANIEREYMVRVMGDVTEDH 165
Query: 73 LIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
L A+ EG ++E ++ D +V+ EGRN EVR L ++ GL + L
Sbjct: 166 LKAMLEGVMLE--DGVARFTDIQSGGGDGINSWYYVVLMEGRNREVRRLWESQGLTVSRL 223
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDL 159
KR+R G +PS + G EL +++
Sbjct: 224 KRVRYGDLFVPSKVKKGQWQELAPNEI 250
>gi|410454013|ref|ZP_11307956.1| pseudouridine synthase [Bacillus bataviensis LMG 21833]
gi|409932693|gb|EKN69651.1| pseudouridine synthase [Bacillus bataviensis LMG 21833]
Length = 245
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F VGRLD T+GL+++TNDG+FA + HP ++L K Y+A I G + +L + +G
Sbjct: 92 KERIFPVGRLDYDTSGLLLLTNDGEFANLLMHPKNELDKVYVAKIKGIPLRENLRKLEKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+E P V LL + I +HEGRN +VR + + G ++ LKR R G
Sbjct: 152 IRLEDGKTAPAKVNLLSVDKKKQTAIVEITIHEGRNRQVRRMFEAIGNEVLKLKRERYG 210
>gi|315646387|ref|ZP_07899505.1| pseudouridine synthase [Paenibacillus vortex V453]
gi|315278030|gb|EFU41350.1| pseudouridine synthase [Paenibacillus vortex V453]
Length = 251
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
+ DYLK + R++ +GRLD T GL+++TNDG+FA +SHP + K Y+A
Sbjct: 84 IVSDYLKGI--------KERVYPIGRLDYDTEGLLLLTNDGEFANLLSHPKYHVPKTYLA 135
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
T+ G + L + +G ++E +P VE PD + I I +HEGRN +VR +
Sbjct: 136 TVKGVPHGTELDKLRQGIMLEDGMTSPAEVEYKDVDPDNKQSVISITIHEGRNRQVRRMF 195
Query: 123 KNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+ + LKR+ G L +L G++ L ++
Sbjct: 196 EAISHPVLRLKRISYGDLLL-QNLKRGLYRHLTADEI 231
>gi|429122861|ref|ZP_19183394.1| pseudouridine synthase [Brachyspira hampsonii 30446]
gi|426281316|gb|EKV58315.1| pseudouridine synthase [Brachyspira hampsonii 30446]
Length = 346
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLF GRLD + G++I+TNDG+FA ++HPS ++ K Y T++G ++ L+ S+G
Sbjct: 100 KERLFYAGRLDSESRGIMIITNDGEFANIITHPSYEILKVYDVTVNGKIDSEALLNASKG 159
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+ +P ++L + +IR+ ++EG+N E+R++ G K+ L+R+ +G
Sbjct: 160 ITIKNVSYSPFKFKILSKGR--IQSKIRLTINEGKNREIRKIFDYLGYKVIDLERISVG 216
>gi|424863536|ref|ZP_18287448.1| pseudouridine synthase B, ribosomal large subunit [SAR86 cluster
bacterium SAR86A]
gi|400756857|gb|EJP71069.1| pseudouridine synthase B, ribosomal large subunit [SAR86 cluster
bacterium SAR86A]
Length = 245
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R ++GRLDV T+GL++ TNDG+FA HPSSK+ +EY+ G + G +
Sbjct: 98 RWISIGRLDVNTSGLMLFTNDGNFANFCMHPSSKIDREYLVRARGIFTNEKRRKLLNGVI 157
Query: 82 IEGT-HCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I+G H D+VE Q + + + G+N EVR+L ++ +++ LKR R G
Sbjct: 158 IDGVKHVFSDIVE---GQKNTTNQWFSVCLTSGKNREVRKLFQSIDMEVSRLKRTRFGPI 214
Query: 141 RLPSDLGIGMHVELKQSDL 159
LPS L G EL ++
Sbjct: 215 FLPSTLRKGDCKELGDQEI 233
>gi|352102562|ref|ZP_08959252.1| RNA-binding S4 domain protein [Halomonas sp. HAL1]
gi|350599936|gb|EHA16016.1| RNA-binding S4 domain protein [Halomonas sp. HAL1]
Length = 291
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R +GRLD+ T+GL++ T DG+ A + HPS+++++EY + G V + H
Sbjct: 101 ERLPRLKGERWIAIGRLDINTSGLLLFTTDGELANRLMHPSTQVEREYAVRVMGEVKREH 160
Query: 73 LIAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
++A+ +G ++E G DV E + +V+ EGRN EVR L ++ L +
Sbjct: 161 ILAMVDGVMLEDGPARFTDVQEFGGEGINTW---FHVVILEGRNREVRRLWESQALTVSR 217
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDL 159
LKR+R G L G VEL Q ++
Sbjct: 218 LKRVRYGNIFLDKRAKAGEWVELNQDEV 245
>gi|299143841|ref|ZP_07036921.1| ribosomal large subunit pseudouridine synthase B [Peptoniphilus sp.
oral taxon 386 str. F0131]
gi|298518326|gb|EFI42065.1| ribosomal large subunit pseudouridine synthase B [Peptoniphilus sp.
oral taxon 386 str. F0131]
Length = 235
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 5/142 (3%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD+ TTGLII+T+DG ++HP +++ K YIAT++G K L I +G
Sbjct: 94 RLYPIGRLDIDTTGLIILTDDGAITNKLTHPKNEINKTYIATVEGKPTKTELDMIRKGIK 153
Query: 82 IEGTHCTPDVVELLPP-QPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+ +P V++L + D I +++HEG+NHEV+ + + LKR+ IG
Sbjct: 154 VGAEKFSPAKVKILKSFEAD---SIIEVIIHEGKNHEVKLMFDKINHPVKKLKRISIGDI 210
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL IG L + ++ +
Sbjct: 211 EL-GDLEIGNFRYLTEDEINYL 231
>gi|196248745|ref|ZP_03147445.1| pseudouridine synthase [Geobacillus sp. G11MC16]
gi|196211621|gb|EDY06380.1| pseudouridine synthase [Geobacillus sp. G11MC16]
Length = 243
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD T+GL+++TNDGDFA + HP +++K Y+A + G + L + +G +
Sbjct: 94 RIYPIGRLDYDTSGLLLLTNDGDFANLLMHPRYEIEKVYVAKVKGIPTREQLKQLEKGVL 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V+LL + I +HEGRN +VR + + G ++ LKR R
Sbjct: 154 LEDGITAPAKVKLLSADRKKRTAIVEISIHEGRNRQVRRMFEAIGCEVLKLKRERYAFLD 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G + EL ++KL+
Sbjct: 214 LKG-LRPGEYRELSPHEVKLL 233
>gi|392531830|ref|ZP_10278967.1| 16S pseudouridylate synthase [Carnobacterium maltaromaticum ATCC
35586]
Length = 243
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL++VTNDG A + P + K Y ATI G V K + +G T+
Sbjct: 97 FPVGRLDKDTEGLLLVTNDGTLAHNLLSPKKHVAKCYQATIQGIVTKEDQVEFEKGLTLN 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +++L +I++ +HEG+ H+V+ + + K+ LKRL +G RL
Sbjct: 157 DGFLCQPAELDILEVDESQQISKIQVTIHEGKFHQVKRMFEAVDKKVTYLKRLSMGPIRL 216
Query: 143 PSDLGIGMHVELKQSDLKLM 162
L +G + L ++++ L+
Sbjct: 217 DESLDLGEYRALTEAEMDLL 236
>gi|377573374|ref|ZP_09802437.1| putative pseudouridine synthase [Mobilicoccus pelagius NBRC 104925]
gi|377537917|dbj|GAB47602.1| putative pseudouridine synthase [Mobilicoccus pelagius NBRC 104925]
Length = 278
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLDV T GL+++TNDG+ A + HPS + K Y+AT+ G VN+ + EG
Sbjct: 135 RLFHVGRLDVDTDGLLLLTNDGELANRLQHPSYGIPKTYVATVPGPVNRDVGRTLREGVE 194
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
+E D L+ P R + +VVHEGR H VR L++ G + +L R+++G
Sbjct: 195 LEDGPVAVDSFRLVDSAPG--RAIVEVVVHEGRKHVVRRLLEEVGHPVETLTRVQVG 249
>gi|431794280|ref|YP_007221185.1| pseudouridine synthase family protein [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784506|gb|AGA69789.1| pseudouridine synthase family protein [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 251
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G+P+ R++ VGRLD T+GL+++TNDG+ A + HPS ++K Y + + + +
Sbjct: 100 GVPQ-RVYPVGRLDYDTSGLLVLTNDGELAHRLMHPSYGVEKTYRVEVHEWIPTQVRQRL 158
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+G +E P V+ + + RP I +HEGRN +VR + K G L SLKR+R
Sbjct: 159 EKGVELEDGKTAPAKVQEVIQKSQGSRPCYEITIHEGRNRQVRRMFKAIGYPLTSLKRIR 218
Query: 137 IGGFRLPSDLGIG 149
G RL + G
Sbjct: 219 FGSLRLEEKMAPG 231
>gi|387626078|ref|YP_006062250.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae INV104]
gi|417693614|ref|ZP_12342803.1| hypothetical protein SPAR120_0662 [Streptococcus pneumoniae
GA47901]
gi|444381765|ref|ZP_21179971.1| pseudouridylate synthase [Streptococcus pneumoniae PCS8106]
gi|444385438|ref|ZP_21183511.1| pseudouridylate synthase [Streptococcus pneumoniae PCS8203]
gi|301793860|emb|CBW36253.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae INV104]
gi|332204697|gb|EGJ18762.1| hypothetical protein SPAR120_0662 [Streptococcus pneumoniae
GA47901]
gi|444250040|gb|ELU56524.1| pseudouridylate synthase [Streptococcus pneumoniae PCS8203]
gi|444254017|gb|ELU60464.1| pseudouridylate synthase [Streptococcus pneumoniae PCS8106]
Length = 241
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ VGRLD TTGL+++T++G + HP + K Y ++ + H+ A +G V
Sbjct: 94 KLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVQVNELLTPDHIQAFQKGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P + + I I EG+ H+++++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTVCKPAKLEILSASPSLSQASITI--SEGKFHQIKKMFLSVGVKVTSLKRIQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL + L Q +L+++
Sbjct: 212 TLNPDLAESNYRPLNQKELQII 233
>gi|119476913|ref|ZP_01617194.1| 16S rRNA uridine-516 pseudouridylate synthase and related
pseudouridylate synthases [marine gamma proteobacterium
HTCC2143]
gi|119449720|gb|EAW30957.1| 16S rRNA uridine-516 pseudouridylate synthase and related
pseudouridylate synthases [marine gamma proteobacterium
HTCC2143]
Length = 282
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R VGRLD T+GL+I T DG A A+ HPSS++ +EY+ + G V+
Sbjct: 97 ERLPKLTGSRWIAVGRLDFNTSGLMIFTTDGQLANALMHPSSEIDREYLCRVLGNVSDVV 156
Query: 73 LIAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
L +S+G ++E GT D+V+ + + + EGRN EVR L ++ +++
Sbjct: 157 LQRLSDGVLLEDGTAKFTDIVD---GGGEGANHWYYVALMEGRNREVRRLWESQEIQVSR 213
Query: 132 LKRLRIGGFRLPSDLGIGMHVEL 154
LKR+R GG LPS L G E+
Sbjct: 214 LKRVRFGGVFLPSKLRQGQWQEM 236
>gi|261406009|ref|YP_003242250.1| pseudouridine synthase [Paenibacillus sp. Y412MC10]
gi|329929803|ref|ZP_08283479.1| pseudouridine synthase B, ribosomal large subunit [Paenibacillus
sp. HGF5]
gi|261282472|gb|ACX64443.1| pseudouridine synthase [Paenibacillus sp. Y412MC10]
gi|328935781|gb|EGG32242.1| pseudouridine synthase B, ribosomal large subunit [Paenibacillus
sp. HGF5]
Length = 251
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
+ DYLK + R++ +GRLD T GL+++TNDG+FA +SHP + K Y+A
Sbjct: 84 IVSDYLKGI--------KERVYPIGRLDYDTEGLLLLTNDGEFANLLSHPKYHVPKTYLA 135
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
T+ G + L + +G ++E +P VE PD + I I +HEGRN +VR +
Sbjct: 136 TVKGVPHGTELDKLRQGIMLEDGMTSPAEVEYKDVDPDNKQSVISITIHEGRNRQVRRMF 195
Query: 123 KNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+ + LKR+ G L +L G++ L ++
Sbjct: 196 EAISHPVLRLKRISYGDLLL-QNLKRGLYRHLTADEI 231
>gi|421489483|ref|ZP_15936863.1| pseudouridylate synthase [Streptococcus oralis SK304]
gi|400365720|gb|EJP18770.1| pseudouridylate synthase [Streptococcus oralis SK304]
Length = 240
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DDY ++ +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDYARA----------KEVFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A ++G +++ + ++G ++ C P +EL+ + + +R+ + EG+ H+V+
Sbjct: 134 LAQVEGIMSQEDVDTFAKGISLKDFTCQPARLELVSTDTEKNQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVSYCGKEVVDLQRLTMGTLALDENLERGEWRRLTKEELEVL 235
>gi|331265615|ref|YP_004325245.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
oralis Uo5]
gi|326682287|emb|CBY99904.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
oralis Uo5]
Length = 240
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DDY ++ +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDYARA----------KEVFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A ++G +++ + ++G ++ C P +E + P+ + +R+ + EG+ H+V+
Sbjct: 134 LAQVEGIMSQEDVETFAKGIPLKDFTCQPAKLEFVSVDPEKNQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVAFCGKEVVDLQRLTMGTLVLDENLEQGEWRRLTKEELEVL 235
>gi|354582613|ref|ZP_09001514.1| pseudouridine synthase [Paenibacillus lactis 154]
gi|353198905|gb|EHB64371.1| pseudouridine synthase [Paenibacillus lactis 154]
Length = 251
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
+ DYLK + R++ +GRLD T GL+++TNDG+FA +SHP + K Y+A
Sbjct: 84 IVSDYLKGV--------KERVYPIGRLDYDTEGLLLLTNDGEFANLLSHPKYHVPKTYLA 135
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
T+ G + L + +G ++E P VE PD + I I +HEGRN +VR +
Sbjct: 136 TVKGVPHGTELDKLRQGIMLEDGMTAPAEVEYRDVDPDNKQSVITITIHEGRNRQVRRMF 195
Query: 123 KNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+ + LKR+ G L +L G++ L S++
Sbjct: 196 EAINHPVIRLKRIAYGDLLL-QNLKRGLYRHLTPSEV 231
>gi|301301292|ref|ZP_07207445.1| putative 16S pseudouridylate 516 synthase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851107|gb|EFK78838.1| putative 16S pseudouridylate 516 synthase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 238
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
PG + LF VGRLD TTGL+I+TNDG FA + P + K Y A + G ++++ +
Sbjct: 91 PG-RKEDLFPVGRLDKETTGLLIITNDGKFAHDIISPKKHVSKTYEAVVTGKISEKEVKT 149
Query: 76 ISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
S+G + G P ++++ ++R+++HEG+ H+VR + ++ L R
Sbjct: 150 FSQGMELANGDKLQPAQLDIISYSEKDDTSKVRVIIHEGKYHQVRRMFGAVSQRVLELDR 209
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++IG L L G + +L + +L L+
Sbjct: 210 VKIGLLELDDTLERGEYRKLTEEELNLI 237
>gi|296112011|ref|YP_003622393.1| pseudouridylate synthase [Leuconostoc kimchii IMSNU 11154]
gi|339490714|ref|YP_004705219.1| pseudouridylate synthase [Leuconostoc sp. C2]
gi|295833543|gb|ADG41424.1| pseudouridylate synthase [Leuconostoc kimchii IMSNU 11154]
gi|338852386|gb|AEJ30596.1| pseudouridylate synthase [Leuconostoc sp. C2]
Length = 249
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD TTG++++TNDG A + HP S++ K YIA + G L + G V
Sbjct: 99 RVYPIGRLDYDTTGVLLLTNDGVIANQLMHPKSRVDKVYIAKVAGIATDDKLAPLKHGVV 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + D +R+++HEGRNH+V+ +++ GL + L R + F
Sbjct: 159 IKGRKTAPARVTIERIDKDKKTSMVRVILHEGRNHQVKNMLQKVGLPVEKLTREQYAFFD 218
Query: 142 LPSDLGIGMHVELKQSDLK 160
L + L G + +L ++K
Sbjct: 219 L-TGLQSGEYRKLTSPEIK 236
>gi|254515164|ref|ZP_05127225.1| ribosomal large subunit pseudouridine synthase B [gamma
proteobacterium NOR5-3]
gi|219677407|gb|EED33772.1| ribosomal large subunit pseudouridine synthase B [gamma
proteobacterium NOR5-3]
Length = 327
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P + R ++GRLD T+GL++ T DG+ A A+ HPS+ +++EY+ + G V + +
Sbjct: 106 ERLPKVKSGRWISIGRLDYNTSGLLLFTTDGELANALMHPSANIEREYMVRVMGDVTEEN 165
Query: 73 LIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ A+ EG ++E ++ D +V+ EGRN EVR L ++ GL + L
Sbjct: 166 ISAMLEGVMLE--DGVARFTDIQSGGGDGINAWYYVVLMEGRNREVRRLWESQGLTVSRL 223
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDL 159
KR+R G +PS + G + EL +++
Sbjct: 224 KRVRYGDLFVPSKVKKGQYQELASNEI 250
>gi|339624202|ref|ZP_08659991.1| 16S rRNA uridine-516 pseudouridylate synthase [Fructobacillus
fructosus KCTC 3544]
Length = 249
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R++ VGRLD TTG++I+TNDGD A + HP K+ K Y A + G N L + G
Sbjct: 98 ARVYPVGRLDYDTTGVLIMTNDGDLANQLMHPKGKVDKVYTAKVKGLANMADLAPLKRGI 157
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
++ G P V + D I I +HEGRNH+V+++++ G + L+R R
Sbjct: 158 MLNGRKTAPARVAIEKVDQDRKVSFITITIHEGRNHQVKDMLQKVGYPVEKLRRDR 213
>gi|227485055|ref|ZP_03915371.1| pseudouridylate synthase [Anaerococcus lactolyticus ATCC 51172]
gi|227236888|gb|EEI86903.1| pseudouridylate synthase [Anaerococcus lactolyticus ATCC 51172]
Length = 231
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R F GRLD + GL+I+TNDG+F + HP KL KEYI +D + ++G
Sbjct: 91 KRFFAAGRLDKDSEGLLIITNDGEFTNNLIHPKYKLDKEYIVKVDKKLKDYQEKQFAQGL 150
Query: 81 VIEGTHCTPDV-VELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I T D +E L R+++H+G N ++R + K G+K+ SLKR+RIG
Sbjct: 151 DIGNGEKTSDAKIEYLENNT------YRVIIHQGYNRQIRRMFKVFGIKVVSLKRIRIGK 204
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L S+L + + +LK +
Sbjct: 205 ISL-SNLKEKEYRYFNEDELKFV 226
>gi|317506859|ref|ZP_07964631.1| RNA pseudouridylate synthase [Segniliparus rugosus ATCC BAA-974]
gi|316254787|gb|EFV14085.1| RNA pseudouridylate synthase [Segniliparus rugosus ATCC BAA-974]
Length = 278
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+ P LP LF VGRLD TTGL++V+NDG+ A ++HPS ++ K Y+AT+ GAV K
Sbjct: 107 REQPDLP-AGLFHVGRLDADTTGLLLVSNDGELAHRLAHPSYEIPKTYLATVRGAVGKGA 165
Query: 73 LIAISEGTVIEGTHCTPDVVELLPPQPDIP-------------RPRIRIVVHEGRNHEVR 119
L A+ G +E D V + P R + I +HEGRN VR
Sbjct: 166 LDALRRGVSLEDGPARADAVAVKGEARPAPLRKAQTGHASGGARSVVEITLHEGRNRIVR 225
Query: 120 ELVKNAGLKLYSLKRLRIGGFRL 142
+ G + L RLRIG RL
Sbjct: 226 RMFDAVGHPVVELARLRIGPIRL 248
>gi|422419916|ref|ZP_16496871.1| ribosomal small subunit pseudouridine synthase A [Listeria
seeligeri FSL N1-067]
gi|313632172|gb|EFR99245.1| ribosomal small subunit pseudouridine synthase A [Listeria
seeligeri FSL N1-067]
Length = 233
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+I+TNDG A + P + K Y A I+G V + A G T+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIEGDVTATDVEAFRTGITLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P IR+ + EG+ H+V+ + G + LKRL +G L
Sbjct: 157 DGYTCKPAHLEIMAPN------EIRVTIQEGKFHQVKRMFAATGKTVTYLKRLSMGKLML 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
LG+G + L + +L L+ K
Sbjct: 211 DESLGLGEYRSLTEDELALLQNK 233
>gi|289435619|ref|YP_003465491.1| ribosomal small subunit pseudouridine synthase A [Listeria
seeligeri serovar 1/2b str. SLCC3954]
gi|289171863|emb|CBH28409.1| ribosomal small subunit pseudouridine synthase A [Listeria
seeligeri serovar 1/2b str. SLCC3954]
Length = 233
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+I+TNDG A + P + K Y A I+G V + A G T+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIEGDVTATDVEAFRTGITLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P IR+ + EG+ H+V+ + G + LKRL +G L
Sbjct: 157 DGYTCKPAHLEIMAPN------EIRVTIQEGKFHQVKRMFAATGKTVIYLKRLSMGKLML 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
LG+G + L + +L L+ K
Sbjct: 211 DESLGLGEYRSLTEDELALLQNK 233
>gi|78045168|ref|YP_360757.1| ribosomal large subunit pseudouridine synthase B [Carboxydothermus
hydrogenoformans Z-2901]
gi|77997283|gb|ABB16182.1| ribosomal large subunit pseudouridine synthase B [Carboxydothermus
hydrogenoformans Z-2901]
Length = 241
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G + R+F VGRLD+ T GL+I+TNDGD A A++HP ++ K Y+A + G N+ L +
Sbjct: 90 GKVKERVFPVGRLDMNTEGLLILTNDGDLAMALTHPKHQVPKTYLALVRGTPNRAKLKEL 149
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
G ++E + P V +P+ I I +HEGR +VR + K G + L R R
Sbjct: 150 ERGVLLEDGYTAPAKVNF--KKPEGKNSWIEITIHEGRKRQVRRMFKKIGHPVLKLIRTR 207
Query: 137 IG 138
I
Sbjct: 208 IA 209
>gi|339006683|ref|ZP_08639258.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
gi|421874131|ref|ZP_16305738.1| conserved hypothetical protein [Brevibacillus laterosporus GI-9]
gi|338775892|gb|EGP35420.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
gi|372456786|emb|CCF15287.1| conserved hypothetical protein [Brevibacillus laterosporus GI-9]
Length = 242
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R ++ VGRLD+ T GL+++TNDG + ++ P K+ KEY A I G V + H+ A +G
Sbjct: 95 RHKVHPVGRLDIDTEGLLLLTNDGQLSHSLLSPKKKVDKEYFAQIQGRVTEEHIAAFKQG 154
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
T+ +G P +E+L DI I + + EG+ H+V+ + LK+ LKR+R+G
Sbjct: 155 VTLDDGYETMPATLEILHS-GDI--SEIHVTIMEGKYHQVKRMFAAFDLKVIYLKRVRMG 211
Query: 139 GFRLPSDLGIGMHVELKQSDL 159
L L +G EL + +L
Sbjct: 212 PLLLDESLELGEFRELTEEEL 232
>gi|329116700|ref|ZP_08245417.1| putative 16S pseudouridylate 516 synthase [Streptococcus parauberis
NCFD 2020]
gi|333905265|ref|YP_004479136.1| ribosomal small subunit pseudouridine synthase B [Streptococcus
parauberis KCTC 11537]
gi|326907105|gb|EGE54019.1| putative 16S pseudouridylate 516 synthase [Streptococcus parauberis
NCFD 2020]
gi|333120530|gb|AEF25464.1| ribosomal small subunit pseudouridine synthase B [Streptococcus
parauberis KCTC 11537]
gi|456371225|gb|EMF50121.1| Ribosomal small subunit pseudouridine synthase A [Streptococcus
parauberis KRS-02109]
Length = 238
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 73/130 (56%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ +F VGRLD T GL+++TN+G+ A + P + K Y+A I+G + K+ A G
Sbjct: 93 QKEVFPVGRLDKDTHGLLLLTNNGELAHQLLTPKKHVDKIYLAHIEGMMTKKDQEAFENG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ HC P +E+L +++I + EG+ H+V+ +VK G ++ L+RL +G
Sbjct: 153 IQLSDHHCLPATLEVLETDEHKQTCKVKITLKEGKFHQVKRMVKACGKEVTDLQRLTMGP 212
Query: 140 FRLPSDLGIG 149
+L + L +G
Sbjct: 213 LKLDNQLQLG 222
>gi|445064091|ref|ZP_21376197.1| pseudouridine synthase [Brachyspira hampsonii 30599]
gi|444504536|gb|ELV05192.1| pseudouridine synthase [Brachyspira hampsonii 30599]
Length = 245
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLF GRLD + G++I+TNDG+FA ++HPS ++ K Y T++G ++ L+ S+G
Sbjct: 100 KERLFYAGRLDSESRGIMIITNDGEFANIITHPSYEILKVYDVTVNGKIDSEALLNASKG 159
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+ +P ++L + +IR+ ++EG+N E+R++ G K+ L+R+ +G
Sbjct: 160 ITIKNVSYSPFKFKILSKGR--IQSKIRLTINEGKNREIRKIFDYLGYKVIDLERISVG 216
>gi|78485572|ref|YP_391497.1| pseudouridine synthase, Rsu [Thiomicrospira crunogena XCL-2]
gi|78363858|gb|ABB41823.1| ribosomal large subunit pseudouridine synthase B [Thiomicrospira
crunogena XCL-2]
Length = 317
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 18 LPR---PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPR R +VGRLD+ T+GL+I+TN+G+ A + HPS ++++EY + G V+ L
Sbjct: 108 LPRIINSRWISVGRLDINTSGLLILTNNGELANRLMHPSYEMEREYSVRVFGEVSDEILD 167
Query: 75 AISEGTVIEGTHCTPDVVELLPPQ-PDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ +G +E + + +P Q D R+V+ EGRN EVR + ++ G+++ L
Sbjct: 168 RLKKGVKLEDGFAKFESIGKIPQQEEDSINQWYRVVIKEGRNREVRRIWESQGVQVSRLV 227
Query: 134 RLRIGGFRLPSDLGIG 149
R R G F LP +L G
Sbjct: 228 RTRYGQFSLPRNLRRG 243
>gi|457095088|gb|EMG25583.1| Ribosomal small subunit pseudouridine synthase A [Streptococcus
parauberis KRS-02083]
Length = 238
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 73/130 (56%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ +F VGRLD T GL+++TN+G+ A + P + K Y+A I+G + K+ A G
Sbjct: 93 QKEVFPVGRLDKDTHGLLLLTNNGELAHQLLTPKKHVDKIYLAHIEGMMTKKDQEAFENG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ HC P +E+L +++I + EG+ H+V+ +VK G ++ L+RL +G
Sbjct: 153 IQLSDHHCLPATLEVLETDEHKQTCKVKITLKEGKFHQVKRMVKACGKEVTDLQRLTMGP 212
Query: 140 FRLPSDLGIG 149
+L + L +G
Sbjct: 213 LKLDNQLQLG 222
>gi|422423059|ref|ZP_16500012.1| ribosomal small subunit pseudouridine synthase A [Listeria
seeligeri FSL S4-171]
gi|313636574|gb|EFS02285.1| ribosomal small subunit pseudouridine synthase A [Listeria
seeligeri FSL S4-171]
Length = 233
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+I+TNDG A + P + K Y A I+G V + A G T+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIEGDVTATDVEAFRTGITLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P IR+ + EG+ H+V+ + G + LKRL +G L
Sbjct: 157 DGYTCKPAHLEIMAPN------EIRVTIQEGKFHQVKRMFAATGKTVTYLKRLSMGKLML 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
LG+G + L + +L L+ K
Sbjct: 211 DESLGLGEYRSLTEDELALLQNK 233
>gi|410662740|ref|YP_006915111.1| RNA pseudouridylate synthase family protein [Simiduia agarivorans
SA1 = DSM 21679]
gi|409025097|gb|AFU97381.1| RNA pseudouridylate synthase family protein [Simiduia agarivorans
SA1 = DSM 21679]
Length = 297
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R +VGRLD T+GL++ TNDG+ A + HPSS + +EY+ I G V+
Sbjct: 104 RLPPLRGERWISVGRLDFNTSGLLLFTNDGELANKLMHPSSVIDREYLVRIQGEVDDDMR 163
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPR-IRIVVHEGRNHEVRELVKNAGLKLYS 131
+ +G ++E G D+V+ R R VV EGRN EVR L ++ G+++
Sbjct: 164 QRLLDGVLLEDGVAKFTDIVDGAGE----GRNRWFYCVVMEGRNREVRRLWESQGVRVSR 219
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
LKR+R G +PS + +G +EL ++K
Sbjct: 220 LKRVRYGNCFIPSHVRVGQWIELNDKEIK 248
>gi|421276284|ref|ZP_15727107.1| pseudouridine synthase [Streptococcus mitis SPAR10]
gi|395878237|gb|EJG89304.1| pseudouridine synthase [Streptococcus mitis SPAR10]
Length = 240
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DDY ++ +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDYARA----------KEVFPVGRLDIDTHGLLLLTNDGKLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A ++G + + ++G ++ C P +EL+ + + +R+ + EG+ H+V+
Sbjct: 134 LAQVNGIMTDEDIETFAQGIPLKDFTCQPAKLELVSIDTEKDQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+V G ++ L+RL +G L DL G L + +L+
Sbjct: 194 MVAYCGKEVVDLQRLTMGTLTLDEDLKSGEWRRLSKEELE 233
>gi|326202112|ref|ZP_08191982.1| pseudouridine synthase [Clostridium papyrosolvens DSM 2782]
gi|325987907|gb|EGD48733.1| pseudouridine synthase [Clostridium papyrosolvens DSM 2782]
Length = 235
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GLI++TNDGDF ++HP ++ K Y A I G +K + G
Sbjct: 97 RLYPVGRLDYDTSGLILLTNDGDFTYRLTHPKHEVNKVYEAVISGFPDKNEITRFETGLK 156
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+ +P E+L + +RI +HEG+N +VR++ + G K+ +LKR++IG
Sbjct: 157 IDDYQTSPAEFEVLNKKG--INTLVRITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIA 214
Query: 142 LPS 144
L +
Sbjct: 215 LEN 217
>gi|420143097|ref|ZP_14650600.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
gi|391856902|gb|EIT67436.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
Length = 236
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD T GL+++TNDG + + P ++KEY A I G V + + + G
Sbjct: 93 REDLFPVGRLDKDTEGLLLLTNDGPLSHNLLSPKKHVEKEYFAQIQGQVTQETVREFAAG 152
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
T+ G + P +L + + IR+++HEG+ H+V+ + + G+K+ LKR+R+G
Sbjct: 153 LTLKSGENVKPG--QLFIEKSGESKSDIRLIIHEGKFHQVKRMFEAVGMKVTYLKRIRMG 210
Query: 139 GFRLPSDLGIGMHVELKQSDL 159
+L L +G + L + ++
Sbjct: 211 SLKLDKALTLGAYRPLTEEEI 231
>gi|431808400|ref|YP_007235298.1| ribosomal large subunit pseudouridine synthase B [Brachyspira
pilosicoli P43/6/78]
gi|430781759|gb|AGA67043.1| ribosomal large subunit pseudouridine synthase B [Brachyspira
pilosicoli P43/6/78]
Length = 351
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLF GRLD + G++I+TNDG+FA ++HPS ++ K Y T++G ++ L+ S G
Sbjct: 100 KERLFYAGRLDSESRGIMIITNDGEFANIITHPSYEILKVYDVTVNGKIDSEALLKASAG 159
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+ +P ++L + +IR+ ++EG+N E+R++ G K+ L+R+ +G
Sbjct: 160 ITIKNVTYSPFKFKILSKGR--VQSKIRLTINEGKNREIRKIFDYLGYKVIDLERISVG 216
>gi|376261827|ref|YP_005148547.1| pseudouridine synthase family protein [Clostridium sp. BNL1100]
gi|373945821|gb|AEY66742.1| pseudouridine synthase family protein [Clostridium sp. BNL1100]
Length = 247
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TV 81
LF GRLD+ T GL+++TNDG + + P + K+Y A + G VN+ A S G T+
Sbjct: 100 LFPAGRLDIDTEGLVLMTNDGQLSHEILSPKKHVPKQYYAKVLGRVNQDDAEAFSNGVTL 159
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+G P +E+L D+ ++ IV EG+ H+V+ + + G K+ LKRL +G R
Sbjct: 160 DDGYKTLPATLEILKSD-DLSEIKLTIV--EGKFHQVKRMFEAVGKKVIYLKRLSMGNLR 216
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L +L +G EL +SD++L+
Sbjct: 217 LDVNLKLGECKELGESDIELL 237
>gi|422630224|ref|ZP_16695423.1| ribosomal large subunit pseudouridine synthase B, partial
[Pseudomonas syringae pv. pisi str. 1704B]
gi|330939561|gb|EGH42880.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. pisi str. 1704B]
Length = 299
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKNGVILEDGPARFTDIQQ--APGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLMG 163
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRYGPVFLNSDLPMGRWREMSQYEVDILA 254
>gi|342217231|ref|ZP_08709878.1| pseudouridylate synthase [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341588121|gb|EGS31521.1| pseudouridylate synthase [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 236
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+I+TNDGDF ++HPS +++K Y T+ G + ++ L + +G
Sbjct: 94 RVYPVGRLDFNTTGLLILTNDGDFTYTMTHPSHEVEKCYRVTVQGRLEEKDLAPLKKGIR 153
Query: 82 IEGTHCTP-DVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
G P +LP + + + + +HEG+NH+V+++ + G + L RL +
Sbjct: 154 FHGESYAPAKFARVLPGK---SQSQFDLTIHEGKNHQVKKMCQALGFSVKKLHRLSLASL 210
Query: 141 RLPSDLGIGMHVELKQSDLK 160
L L IG + +L ++K
Sbjct: 211 DLKG-LEIGQYRKLTPEEVK 229
>gi|282882075|ref|ZP_06290716.1| ribosomal large subunit pseudouridine synthase B [Peptoniphilus
lacrimalis 315-B]
gi|300814964|ref|ZP_07095192.1| putative pseudouridine synthase B, ribosomal large subunit
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281298105|gb|EFA90560.1| ribosomal large subunit pseudouridine synthase B [Peptoniphilus
lacrimalis 315-B]
gi|300510934|gb|EFK38206.1| putative pseudouridine synthase B, ribosomal large subunit
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 235
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R++ VGRLD+ TTGL+++TNDG A + HP + + K YIAT++G N R L + G
Sbjct: 93 KRVYPVGRLDIDTTGLVLLTNDGTLANILMHPKNNIYKTYIATVEGKPNARELNLLRNGL 152
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+ + V++L I I +HEG+NH+V+ + G ++ LKR+ IG
Sbjct: 153 SLRDLKTSKAKVKILKNFD--KDSIIEISIHEGKNHQVKRMFSYIGHEVKKLKRISIGKI 210
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L +L IG + L ++K +
Sbjct: 211 EL-GNLEIGNYRYLNNEEVKYL 231
>gi|46908512|ref|YP_014901.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes serotype 4b str. F2365]
gi|47092440|ref|ZP_00230230.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes str. 4b H7858]
gi|226224887|ref|YP_002758994.1| 16S pseudouridylate synthase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254825083|ref|ZP_05230084.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL J1-194]
gi|254854294|ref|ZP_05243642.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL R2-503]
gi|254933330|ref|ZP_05266689.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes HPB2262]
gi|254992010|ref|ZP_05274200.1| 16S pseudouridylate synthase [Listeria monocytogenes FSL J2-064]
gi|255521704|ref|ZP_05388941.1| 16S pseudouridylate synthase [Listeria monocytogenes FSL J1-175]
gi|300763910|ref|ZP_07073906.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL N1-017]
gi|386733026|ref|YP_006206522.1| 16S pseudouridylate synthase [Listeria monocytogenes 07PF0776]
gi|404281898|ref|YP_006682796.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2755]
gi|404287711|ref|YP_006694297.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|405750676|ref|YP_006674142.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes ATCC 19117]
gi|405753550|ref|YP_006677015.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2378]
gi|405756456|ref|YP_006679920.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2540]
gi|406705072|ref|YP_006755426.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes L312]
gi|417316134|ref|ZP_12102788.1| 16S pseudouridylate synthase [Listeria monocytogenes J1816]
gi|417318332|ref|ZP_12104920.1| 16S pseudouridylate synthase [Listeria monocytogenes J1-220]
gi|424715159|ref|YP_007015874.1| Uncharacterized RNA pseudouridine synthase YtzG [Listeria
monocytogenes serotype 4b str. LL195]
gi|424824086|ref|ZP_18249099.1| Ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes str. Scott A]
gi|46881784|gb|AAT05078.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes serotype 4b str. F2365]
gi|47019217|gb|EAL09960.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes serotype 4b str. H7858]
gi|225877349|emb|CAS06063.1| Putative 16S pseudouridylate synthase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258607686|gb|EEW20294.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL R2-503]
gi|293584891|gb|EFF96923.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes HPB2262]
gi|293594326|gb|EFG02087.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL J1-194]
gi|300515251|gb|EFK42302.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL N1-017]
gi|328465377|gb|EGF36624.1| 16S pseudouridylate synthase [Listeria monocytogenes J1816]
gi|328471562|gb|EGF42442.1| 16S pseudouridylate synthase [Listeria monocytogenes J1-220]
gi|332312766|gb|EGJ25861.1| Ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes str. Scott A]
gi|384391784|gb|AFH80854.1| 16S pseudouridylate synthase [Listeria monocytogenes 07PF0776]
gi|404219876|emb|CBY71240.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes ATCC 19117]
gi|404222750|emb|CBY74113.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2378]
gi|404225656|emb|CBY77018.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2540]
gi|404228533|emb|CBY49938.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2755]
gi|404246640|emb|CBY04865.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|406362102|emb|CBY68375.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes L312]
gi|424014343|emb|CCO64883.1| Uncharacterized RNA pseudouridine synthase YtzG [Listeria
monocytogenes serotype 4b str. LL195]
Length = 233
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI- 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A + G +
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTLADVEAFAAGIELD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I + + EG+ H+V+ + G K+ LKR+ +G +L
Sbjct: 157 DGYTCKPARLEIITPN------EINVTIQEGKFHQVKRMFAARGKKVSYLKRISMGNLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
LG+G + L +S+L ++ K
Sbjct: 211 DESLGLGEYRPLTESELAILQNK 233
>gi|359396218|ref|ZP_09189270.1| Ribosomal large subunit pseudouridine synthase B [Halomonas
boliviensis LC1]
gi|357970483|gb|EHJ92930.1| Ribosomal large subunit pseudouridine synthase B [Halomonas
boliviensis LC1]
Length = 291
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R +GRLD+ T+GL++ T DG+ A + HPS+++++EY + G V + H+
Sbjct: 102 RLPRLKGERWIAIGRLDINTSGLLLFTTDGELANRLMHPSTQVEREYAVRVMGEVKREHI 161
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+A+ +G ++E G DV E + +V+ EGRN EVR L ++ L + L
Sbjct: 162 LAMVDGVMLEDGPARFTDVQEFGGEGINTW---FHVVILEGRNREVRRLWESQALTVSRL 218
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDL 159
KR+R G L G VEL Q ++
Sbjct: 219 KRVRYGNIFLDKRAKAGEWVELTQDEV 245
>gi|404477265|ref|YP_006708696.1| ribosomal large subunit pseudouridine synthase B [Brachyspira
pilosicoli B2904]
gi|434383354|ref|YP_006705137.1| ribosomal large subunit pseudouridine synthase B [Brachyspira
pilosicoli WesB]
gi|404432003|emb|CCG58049.1| ribosomal large subunit pseudouridine synthase B [Brachyspira
pilosicoli WesB]
gi|404438754|gb|AFR71948.1| ribosomal large subunit pseudouridine synthase B [Brachyspira
pilosicoli B2904]
Length = 351
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLF GRLD + G++I+TNDG+FA ++HPS ++ K Y T++G ++ L+ S G
Sbjct: 100 KERLFYAGRLDSESRGIMIITNDGEFANIITHPSYEILKVYDVTVNGKIDSEALLKASAG 159
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+ +P ++L + +IR+ ++EG+N E+R++ G K+ L+R+ +G
Sbjct: 160 ITIKNVTYSPFKFKILSKGR--VQSKIRLTINEGKNREIRKIFDYLGYKVIDLERISVG 216
>gi|300870781|ref|YP_003785652.1| ribosomal large subunit pseudouridine synthase B [Brachyspira
pilosicoli 95/1000]
gi|300688480|gb|ADK31151.1| ribosomal large subunit pseudouridine synthase B [Brachyspira
pilosicoli 95/1000]
Length = 351
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLF GRLD + G++I+TNDG+FA ++HPS ++ K Y T++G ++ L+ S G
Sbjct: 100 KERLFYAGRLDSESRGIMIITNDGEFANIITHPSYEILKVYDVTVNGKIDSEALLKASAG 159
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+ +P ++L + +IR+ ++EG+N E+R++ G K+ L+R+ +G
Sbjct: 160 ITIKNVTYSPFKFKILSKGR--VQSKIRLTINEGKNREIRKIFDYLGYKVIDLERISVG 216
>gi|448747162|ref|ZP_21728824.1| Pseudouridine synthase, RsuA/RluB/E/F [Halomonas titanicae BH1]
gi|445565322|gb|ELY21433.1| Pseudouridine synthase, RsuA/RluB/E/F [Halomonas titanicae BH1]
Length = 291
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R +GRLD+ T+GL++ T DG+ A + HPS+++++EY + G V + H+
Sbjct: 102 RLPRLKGERWIAIGRLDINTSGLLLFTTDGELANRLMHPSTQVEREYAVRVMGEVKREHI 161
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+A+ +G ++E G DV E + +V+ EGRN EVR L ++ L + L
Sbjct: 162 LAMVDGVMLEDGPARFTDVQEFGGEGINTW---FHVVILEGRNREVRRLWESQALTVSRL 218
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDL 159
KR+R G L G VEL Q ++
Sbjct: 219 KRVRYGNIFLDKRAKAGEWVELTQDEV 245
>gi|323144920|ref|ZP_08079483.1| pseudouridine synthase B, ribosomal large subunit [Succinatimonas
hippei YIT 12066]
gi|322415318|gb|EFY06089.1| pseudouridine synthase B, ribosomal large subunit [Succinatimonas
hippei YIT 12066]
Length = 340
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R VGRLD+ T+GL++ T DG+ A A+ HPS ++++ Y A I G V + +
Sbjct: 93 LPRPDGGRWIYVGRLDLNTSGLLLFTTDGELANALMHPSKEIERVYAARIYGEVTDKQIA 152
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
A+ +G ++E + D V + + + + EGRN EVR L + GL++ L R
Sbjct: 153 ALKQGVMLEDGKASFDKVVFVGGEG--RNQWYHVSLKEGRNREVRRLWEAVGLQVSRLIR 210
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDL 159
+R G L + L G + EL S++
Sbjct: 211 IRYAGVDLDNKLRAGKYRELTLSEI 235
>gi|289423805|ref|ZP_06425600.1| ribosomal large subunit pseudouridine synthase B
[Peptostreptococcus anaerobius 653-L]
gi|289155844|gb|EFD04514.1| ribosomal large subunit pseudouridine synthase B
[Peptostreptococcus anaerobius 653-L]
Length = 238
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDGD ++HP ++ K YIA++ G V + A G
Sbjct: 94 KERIYPVGRLDYETSGLLLMTNDGDLTYKITHPKHEMNKTYIASVRGIVTQEEKYAFENG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IE +++L + ++ +HEG+N +VR++ + +LKR+++G
Sbjct: 154 LKIEDYTTAKANLKILKTDTNKNYSVCKVTIHEGKNRQVRKMFQAINHPTMNLKRVQVGK 213
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+ DL +G + +L + +++ +
Sbjct: 214 INI-GDLELGKYRKLTKEEIEYL 235
>gi|418974353|ref|ZP_13522265.1| pseudouridylate synthase [Streptococcus oralis SK1074]
gi|383349257|gb|EID27203.1| pseudouridylate synthase [Streptococcus oralis SK1074]
Length = 240
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 85/160 (53%), Gaps = 10/160 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD+ ++ +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDFART----------KEVFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A ++G +++ + ++G ++ C P +E+L D +IR+ + EG+ H+V+
Sbjct: 134 LAQVEGIMSQEDVDTFAKGIPLKDFTCQPAKLEILSLDSDKGESQIRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+V G ++ L+RL +G L +L G L + +L+
Sbjct: 194 MVAYCGKEVVDLQRLTMGTLALDENLERGEWRRLTKEELE 233
>gi|417940012|ref|ZP_12583300.1| pseudouridylate synthase [Streptococcus oralis SK313]
gi|343388893|gb|EGV01478.1| pseudouridylate synthase [Streptococcus oralis SK313]
Length = 214
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 67 QLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVKVNGLLTPNHIQQFKDGIV 126
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P R I + EG+ H+V+++ + G+K+ SLKR++ G F
Sbjct: 127 FLDGTVCKPAQLEILSSSPT--ESRAFITISEGKFHQVKKMFLSVGVKVVSLKRVQFGDF 184
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L +L G + L +L+++
Sbjct: 185 TLDPELAEGQYRPLNPEELEII 206
>gi|326390305|ref|ZP_08211864.1| pseudouridine synthase [Thermoanaerobacter ethanolicus JW 200]
gi|325993582|gb|EGD52015.1| pseudouridine synthase [Thermoanaerobacter ethanolicus JW 200]
Length = 241
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 10/150 (6%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
RNP F VGRLD T GL+++TNDGD A + P + K+Y A I G VN+ +
Sbjct: 97 RNP-------FPVGRLDKDTEGLLLITNDGDLAHQLLSPKKNVIKKYYAEILGFVNESDI 149
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
A +EG ++E G P +E+L D+ ++ + + EG+ H+++ + ++ G K+ L
Sbjct: 150 KAFNEGIILEDGYKTLPANLEILFSSSDV--SKVYVYIREGKYHQIKRMFESVGKKVIYL 207
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KRL + L +L G EL + +L +
Sbjct: 208 KRLAMDNLTLDENLKPGEWRELSEKELSFL 237
>gi|339499996|ref|YP_004698031.1| pseudouridine synthase Rsu [Spirochaeta caldaria DSM 7334]
gi|338834345|gb|AEJ19523.1| pseudouridine synthase Rsu [Spirochaeta caldaria DSM 7334]
Length = 250
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 10/148 (6%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++T+GRLD ++GLI+ TNDGDFA A+ HPS++L+KEYI + + A S+G
Sbjct: 99 RVYTIGRLDYRSSGLILFTNDGDFAAALGHPSTELEKEYIVDSTVPIPDATIEAFSKGIE 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF- 140
I+G T +E L R +RIV+ EG+N E+R + + L L R+RIG
Sbjct: 159 IDGELYTCASIERL------GRKSVRIVLIEGKNREIRRVFSHFHLHPEKLHRIRIGPLM 212
Query: 141 --RLPSDLGIGMHV-ELKQSDLKLMGWK 165
LP G + V EL+ + L +K
Sbjct: 213 LGTLPEGKGRALSVEELRSFEPYLAAYK 240
>gi|296126235|ref|YP_003633487.1| RNA-binding S4 domain-containing protein [Brachyspira murdochii DSM
12563]
gi|296018051|gb|ADG71288.1| RNA-binding S4 domain protein [Brachyspira murdochii DSM 12563]
Length = 381
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RLF GRLD + G++I+TNDG+FA ++HPS ++ K Y T++G ++ L S+G
Sbjct: 100 KERLFYAGRLDSESRGIMIITNDGEFANIITHPSYEILKVYDVTVNGKIDSEKLYEASKG 159
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+ +P ++L + +IR+ ++EG+N E+R++ G K+ L+R+ +G
Sbjct: 160 ITIKNITYSPFKFKILSKGR--VQSKIRLTINEGKNREIRKIFDYLGYKVIDLERISVG 216
>gi|254468122|ref|ZP_05081528.1| ribosomal large subunit pseudouridine synthase B [beta
proteobacterium KB13]
gi|207086932|gb|EDZ64215.1| ribosomal large subunit pseudouridine synthase B [beta
proteobacterium KB13]
Length = 257
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + + ++GRLD+ T+GL+++TNDG A + HPS ++ +EY I G V + +
Sbjct: 106 PKVKNGKWISIGRLDINTSGLLLITNDGKLANHMMHPSQQIDREYSVRILGEVTEEIINN 165
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
I +G ++ D E + RI++ EGRN E+R LV++ LK+ L R
Sbjct: 166 IRKGVKLDDGVAHVDTFEHTGGEG--ANQWFRIILKEGRNREIRRLVESQNLKVSRLIRT 223
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLK 160
R G LPS L G +EL++ +L+
Sbjct: 224 RYGPLNLPSHLKRGQFMELEKKNLE 248
>gi|210623378|ref|ZP_03293775.1| hypothetical protein CLOHIR_01725 [Clostridium hiranonis DSM 13275]
gi|210153639|gb|EEA84645.1| hypothetical protein CLOHIR_01725 [Clostridium hiranonis DSM 13275]
Length = 241
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG A V P + K Y A IDG V + + A +G V++
Sbjct: 101 FPVGRLDKDTEGLLVLTNDGQLAHRVLSPKKHVPKTYYAKIDGKVTEEDIEAFKQGVVLD 160
Query: 84 GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLP 143
+ T ++ DI I + +HEG+ H+V+ + ++ G + LKRL +G +L
Sbjct: 161 DGYETMPSELVILKSDDI--SEIELTIHEGKFHQVKRMFESVGKTVVYLKRLSMGALKLD 218
Query: 144 SDLGIGMHVELKQSDLKLM 162
L +G + EL ++KL+
Sbjct: 219 ETLELGEYRELTDEEVKLI 237
>gi|329767586|ref|ZP_08259107.1| hypothetical protein HMPREF0428_00804 [Gemella haemolysans M341]
gi|328839213|gb|EGF88797.1| hypothetical protein HMPREF0428_00804 [Gemella haemolysans M341]
Length = 235
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD T GL+++TNDG+ A + P ++K+Y + G + ++ + G +
Sbjct: 94 KVFPVGRLDKDTEGLMLLTNDGELAHKLISPKKDVEKKYYVEVSGKLKDEYIELVENGII 153
Query: 82 IEGTH-CTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I+G + C +E+L + + R I + EG+ H+V+ ++K G + LKRL IG
Sbjct: 154 IDGGYKCKSARLEILESNEE--KSRASIFITEGKFHQVKRMMKALGTTVTYLKRLSIGSL 211
Query: 141 RLPSDLGIGMHVELKQSDLK 160
+L +L +G + L + +LK
Sbjct: 212 KLDENLKLGEYRYLTEKELK 231
>gi|417793506|ref|ZP_12440781.1| putative 16S pseudouridylate 516 synthase [Streptococcus oralis
SK255]
gi|334272791|gb|EGL91148.1| putative 16S pseudouridylate 516 synthase [Streptococcus oralis
SK255]
Length = 241
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 QLYAIGRLDRNTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVKVNGLITPEHIQQFQDGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + EG+ H+V+++ + G+K+ +LKR++ G F
Sbjct: 154 FLDGTLCKPAKLEILSASP--TESHASITISEGKFHQVKKMFLSVGVKVTALKRVQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L S+L G + L +L+++
Sbjct: 212 TLNSELSEGQYRPLNPEELEII 233
>gi|297584469|ref|YP_003700249.1| pseudouridine synthase [Bacillus selenitireducens MLS10]
gi|297142926|gb|ADH99683.1| pseudouridine synthase [Bacillus selenitireducens MLS10]
Length = 239
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD T+GLI++TNDG+FA + HP ++ K YIA + G + L + G V
Sbjct: 94 RVFPVGRLDFDTSGLIVLTNDGEFANLLMHPKYRIHKTYIAKVKGLPLREDLKKLDRGIV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P +++ + I +HEGRN +VR + G + LKR R G
Sbjct: 154 LEDGKTAPAKTKVIKTDKRKGTAVVEITIHEGRNRQVRRMFDAIGFPVMKLKRERYGILD 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G ELK ++K +
Sbjct: 214 LKG-LNAGDWRELKPHEVKTL 233
>gi|148244476|ref|YP_001219170.1| ribosomal large subunit pseudouridine synthase B [Candidatus
Vesicomyosocius okutanii HA]
gi|146326303|dbj|BAF61446.1| ribosomal large subunit pseudouridine synthase B [Candidatus
Vesicomyosocius okutanii HA]
Length = 241
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 18 LPR-PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
LP+ R VGRLD+ T+GL++VTN+GD A + HPSS++ +EY + G V + L +
Sbjct: 93 LPKESRWIMVGRLDLNTSGLLLVTNNGDLANKLMHPSSEIDREYAVRVLGQVKNKDLKKL 152
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
++G V + + + + ++V+ EG+ EVR L + G K+ L R+R
Sbjct: 153 TQGVVFDDGFSKFNQITFSGGKG--ANRWYKVVLREGKKREVRRLWEVLGFKVSRLIRIR 210
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G RLP +L + LK +KL+
Sbjct: 211 FGEIRLPDNLKANQYDYLKTVQIKLL 236
>gi|430377528|ref|ZP_19431661.1| ribosomal large subunit pseudouridine synthase B [Moraxella macacae
0408225]
gi|429540665|gb|ELA08694.1| ribosomal large subunit pseudouridine synthase B [Moraxella macacae
0408225]
Length = 286
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R VGRLD+ +TGL++ TNDG+ A + HPS+++++EY + G V
Sbjct: 97 ERLPPLSHDRWVMVGRLDINSTGLLLFTNDGELAHRLMHPSNEVEREYAVRVMGDVTTEI 156
Query: 73 LIAISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
L +++G + +G D+VE + ++ + EGRN EVR L ++ GLK+
Sbjct: 157 LHNLTKGVELDDGLAKFDDIVE---KGGEGINKWYQVKLKEGRNREVRRLFESQGLKVSR 213
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDL 159
L R+R G LP +L G ++EL +S++
Sbjct: 214 LLRVRYGTVSLPRELRTGRYIELDRSEI 241
>gi|359787533|ref|ZP_09290571.1| RNA-binding S4 domain protein [Halomonas sp. GFAJ-1]
gi|359295198|gb|EHK59482.1| RNA-binding S4 domain protein [Halomonas sp. GFAJ-1]
Length = 293
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R +GRLD+ T+GL++ T DG+ A + HPS+++++EY + G V + H
Sbjct: 101 ERLPRLKGERWIAIGRLDINTSGLLLFTTDGELANRLMHPSTQVEREYAVRVMGEVKREH 160
Query: 73 LIAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
++A+ +G ++E G DV E + +V+ EGRN EVR L ++ L +
Sbjct: 161 IVAMVDGVMLEDGPARFTDVQEFGGEGINTW---FHVVILEGRNREVRRLWESQELTVSR 217
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDL 159
LKR+R G L G VEL Q ++
Sbjct: 218 LKRVRYGNIFLDKRAKAGEWVELSQDEV 245
>gi|270293127|ref|ZP_06199338.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
M143]
gi|417934590|ref|ZP_12577910.1| pseudouridylate synthase [Streptococcus mitis bv. 2 str. F0392]
gi|270279106|gb|EFA24952.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
M143]
gi|340771160|gb|EGR93675.1| pseudouridylate synthase [Streptococcus mitis bv. 2 str. F0392]
Length = 241
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 88 PDIQSDSLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGPLTSDHIQQ 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
EG V ++ C P +++L P R I + EG+ H+V+++ + +K+ +LKR
Sbjct: 148 FKEGIVFLDEITCKPAKLDILSASP--TESRASITISEGKFHQVKKMFLSVSVKVTALKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ G F L S+L G + L Q +L+++
Sbjct: 206 VQFGDFTLDSELAEGQYRPLNQKELQII 233
>gi|409422666|ref|ZP_11259754.1| RNA-binding S4 domain-containing protein [Pseudomonas sp. HYS]
Length = 376
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V++ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDEDMIA 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLMG 163
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQQEVDILA 254
>gi|392374263|ref|YP_003206096.1| RNA pseudouridine synthase [Candidatus Methylomirabilis oxyfera]
gi|258591956|emb|CBE68261.1| Uncharacterized RNA pseudouridine synthase aq_1464 (RNA-uridine
isomerase) (RNA pseudouridylate synthase) [Candidatus
Methylomirabilis oxyfera]
Length = 282
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
PRLF VGRLD T GL+++TNDG A + HPS +++KEY+A + G L + G
Sbjct: 119 PRLFPVGRLDYQTEGLVLLTNDGVLAHGLMHPSFEVEKEYLAKVRGCPTPDDLARLKAGV 178
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
V EG ++ +P I ++++VH+GR HE+R + G + L+R+R+G
Sbjct: 179 VSEGEKLWATHAAIV--KPGIGSAWLKLIVHQGRYHEIRRMCDAIGHPVLRLQRIRVG 234
>gi|399053727|ref|ZP_10742526.1| pseudouridine synthase family protein [Brevibacillus sp. CF112]
gi|433546937|ref|ZP_20503230.1| ribosomal large subunit pseudouridine synthase B [Brevibacillus
agri BAB-2500]
gi|398048504|gb|EJL40976.1| pseudouridine synthase family protein [Brevibacillus sp. CF112]
gi|432181765|gb|ELK39373.1| ribosomal large subunit pseudouridine synthase B [Brevibacillus
agri BAB-2500]
Length = 249
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 72/123 (58%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDGD A ++HPS ++ K Y A + G ++ L ++ G
Sbjct: 93 KERVYPVGRLDYDTSGLLLLTNDGDLANKLAHPSYEIDKVYRAWVKGVPSQEKLKKLATG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E +P L+ +P + I + +HEGRN +VR + G + +L+R+R+G
Sbjct: 153 IRLEDGMTSPGASRLVKAEPGNAKALIELTIHEGRNRQVRRMCDAIGHPVLTLERIRLGF 212
Query: 140 FRL 142
L
Sbjct: 213 LTL 215
>gi|167040440|ref|YP_001663425.1| pseudouridine synthase [Thermoanaerobacter sp. X514]
gi|300913725|ref|ZP_07131042.1| pseudouridine synthase [Thermoanaerobacter sp. X561]
gi|307723259|ref|YP_003903010.1| pseudouridine synthase [Thermoanaerobacter sp. X513]
gi|166854680|gb|ABY93089.1| pseudouridine synthase [Thermoanaerobacter sp. X514]
gi|300890410|gb|EFK85555.1| pseudouridine synthase [Thermoanaerobacter sp. X561]
gi|307580320|gb|ADN53719.1| pseudouridine synthase [Thermoanaerobacter sp. X513]
Length = 240
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
RNP F VGRLD T GL+++TNDGD A + P + K+Y A I G VN+ +
Sbjct: 97 RNP-------FPVGRLDKDTEGLLLITNDGDLAHKLLSPKKNVIKKYYAKILGFVNESDI 149
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
A +EG V+E G P +E+L D+ ++ + + EG+ H+++ + ++ G K+ L
Sbjct: 150 KAFNEGIVLEDGYKTLPANLEIL-SSSDV--SKVYVYIREGKYHQIKRMFESVGKKVIYL 206
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KRL +G L +L G EL + +L +
Sbjct: 207 KRLAMGNLTLDENLKPGEWRELSEEELSFL 236
>gi|424780253|ref|ZP_18207133.1| Ribosomal large subunit pseudouridine synthase B [Catellicoccus
marimammalium M35/04/3]
gi|422843211|gb|EKU27652.1| Ribosomal large subunit pseudouridine synthase B [Catellicoccus
marimammalium M35/04/3]
Length = 239
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 70/121 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+F+Q ++HP +L K Y+A + G +K +L I+ G
Sbjct: 94 RIYPVGRLDYDTSGLLLLTNDGEFSQRLTHPKYELDKVYVAKVKGIADKYNLRPIAYGMK 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P E+L + + +HEGR H+V+ + + GL + L R + G
Sbjct: 154 LDGKKTAPARYEILSVDETKGSSVVSLTIHEGRYHQVKRMFEACGLPVQKLCREQYGFLT 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|289624030|ref|ZP_06456984.1| ribosomal large subunit pseudouridine synthase B, partial
[Pseudomonas syringae pv. aesculi str. NCPPB 3681]
Length = 308
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLMG 163
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDILA 254
>gi|256752686|ref|ZP_05493537.1| pseudouridine synthase [Thermoanaerobacter ethanolicus CCSD1]
gi|256748448|gb|EEU61501.1| pseudouridine synthase [Thermoanaerobacter ethanolicus CCSD1]
Length = 240
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
RNP F VGRLD T GL+++TNDGD A + P + K+Y A I G VN+ +
Sbjct: 97 RNP-------FPVGRLDKDTEGLLLITNDGDLAHKLLSPKKNVIKKYYAKILGFVNESDI 149
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
A +EG V+E G P +E+L D+ ++ + + EG+ H+++ + ++ G K+ L
Sbjct: 150 KAFNEGIVLEDGYKTLPANLEIL-SSSDV--SKVYVYIREGKYHQIKRMFESVGKKVIYL 206
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KRL +G L +L G EL + +L +
Sbjct: 207 KRLAMGNLTLDENLKPGEWRELSEEELSFL 236
>gi|255657972|ref|ZP_05403381.1| ribosomal large subunit pseudouridine synthase B [Mitsuokella
multacida DSM 20544]
gi|260850173|gb|EEX70180.1| ribosomal large subunit pseudouridine synthase B [Mitsuokella
multacida DSM 20544]
Length = 250
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R R++ VGRLD T GL+++TNDG + HP +++K Y A + G + + L + +G
Sbjct: 97 RERVYPVGRLDNNTEGLLLITNDGALMNGLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDG 156
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIR------IVVHEGRNHEVRELVKNAGLKLYSLK 133
++E P V LLP + P R+R I +HEGRN +VR + G + SLK
Sbjct: 157 LLLEDGMTAPAKVSLLPERE--PGERVRGLTRAAITIHEGRNRQVRRMFAAVGCDVKSLK 214
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDL 159
R+R G L + G H L + ++
Sbjct: 215 RVRFAGLTLKG-VARGQHRALTEEEV 239
>gi|118602371|ref|YP_903586.1| ribosomal large subunit pseudouridine synthase B [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567310|gb|ABL02115.1| ribosomal large subunit pseudouridine synthase B [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 242
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 18 LPR-PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
LP+ R VGRLD+ T+GL++ TN+GD A + HPSS++ +EY + G V L +
Sbjct: 93 LPKESRWVMVGRLDLNTSGLLLFTNNGDLANKLMHPSSQIDREYAVRVLGQVEDEDLKKL 152
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
++G ++ + Q ++V+ EGR HEVR L + G K+ L R+R
Sbjct: 153 TQGVKLDDGFAKFSQIIFGGGQG--ANRWYKVVLKEGRKHEVRRLWEELGFKVSRLIRIR 210
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G RLP++L + LK +KL+
Sbjct: 211 FGEIRLPNNLKANQYDYLKPRQVKLL 236
>gi|414083180|ref|YP_006991888.1| hypothetical protein BN424_1131 [Carnobacterium maltaromaticum
LMA28]
gi|412996764|emb|CCO10573.1| conserved hypothetical protein [Carnobacterium maltaromaticum
LMA28]
Length = 243
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL++VTNDG A + P + K Y ATI G V K + +G T+
Sbjct: 97 FPVGRLDKDTEGLLLVTNDGTLAHNLLSPKKHVAKCYQATIQGIVTKEDQVEFEKGLTLN 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +++L +I++ +HEG+ H+V+ + + K+ LKRL +G RL
Sbjct: 157 DGFLCQPAELDILEVDESQQISQIQVTIHEGKFHQVKRMFEAVDKKVTYLKRLSMGPIRL 216
Query: 143 PSDLGIGMHVELKQSDLKLM 162
L +G + L ++++ L+
Sbjct: 217 DERLDLGEYRALTEAEMDLL 236
>gi|330719107|ref|ZP_08313707.1| 16S rRNA uridine-516 pseudouridylate synthase [Leuconostoc fallax
KCTC 3537]
Length = 252
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG +++TNDG A + HP SK+ K YIA + G + L+ + +G +
Sbjct: 101 RVYPVGRLDYDTTGALLLTNDGTIANELMHPKSKVDKVYIAKVKGMATENDLLPLKKGVM 160
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
IEG P V + +++++HEG+NH+V+ ++ G + LKR
Sbjct: 161 IEGHKTQPARVSVESVDKTKKTSMVKLIIHEGKNHQVKNMLAKVGFPVEKLKR 213
>gi|387814528|ref|YP_005430014.1| 23S rRNA pseudouridylate synthase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339544|emb|CCG95591.1| 23S rRNA pseudouridylate synthase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 328
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R ++GRLD+ TTGL++ T DG+ A + HPSS++ +EY + G V+ +
Sbjct: 111 RLPRLKDQRWISIGRLDINTTGLVLFTTDGELANRLMHPSSQIDREYAVRVFGEVDDAMI 170
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ EG ++E ++ P + + EGRN EVR L ++ G+++ LK
Sbjct: 171 ERLKEGVLLE--DGMAKFTDISPAGGKGMNQWFHVTLLEGRNREVRRLWESQGVRVSRLK 228
Query: 134 RLRIGGFRLPSDLGIGMHVELKQ 156
R+R G LPS L +G EL Q
Sbjct: 229 RVRYGPIFLPSRLTMGRWEELDQ 251
>gi|15895934|ref|NP_349283.1| pseudouridylate synthase [Clostridium acetobutylicum ATCC 824]
gi|337737887|ref|YP_004637334.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
gi|384459397|ref|YP_005671817.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|15025707|gb|AAK80623.1|AE007765_5 Predicted pseudouridylate synthase [Clostridium acetobutylicum ATCC
824]
gi|325510086|gb|ADZ21722.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|336292492|gb|AEI33626.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
Length = 242
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI- 82
F +GRLD T GL+ +TNDGDF + P + K Y A ID V ++A EG V+
Sbjct: 98 FPIGRLDKDTVGLLFLTNDGDFNHRLISPKWHVDKVYYAKIDKDVTSEDVVAFKEGIVLD 157
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C +E+L + +++ V EG+ H+V+ + + G K+ LKR+ G +L
Sbjct: 158 DGYKCMSAKLEVLNNSKE--GSEVKVTVREGKYHQVKRMFEAQGKKVVYLKRISFAGIKL 215
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
+L G + EL + ++K + K
Sbjct: 216 DENLEEGEYRELTEDEMKAIKQK 238
>gi|418293379|ref|ZP_12905288.1| pseudouridine synthase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064771|gb|EHY77514.1| pseudouridine synthase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 375
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 105 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMID 164
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 165 RLKTGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 222
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ QS++ ++
Sbjct: 223 RVRFGPVFMTSDLPMGRWREMSQSEVDIL 251
>gi|120554089|ref|YP_958440.1| RNA-binding S4 domain-containing protein [Marinobacter aquaeolei
VT8]
gi|120323938|gb|ABM18253.1| ribosomal large subunit pseudouridine synthase B [Marinobacter
aquaeolei VT8]
Length = 328
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R ++GRLD+ TTGL++ T DG+ A + HPSS++ +EY + G V+ +
Sbjct: 111 RLPRLKDQRWISIGRLDINTTGLVLFTTDGELANRLMHPSSQIDREYAVRVFGEVDDAMI 170
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ EG ++E ++ P + + EGRN EVR L ++ G+++ LK
Sbjct: 171 ERLKEGVLLEDGMAK--FTDISPAGGKGMNQWFHVTLLEGRNREVRRLWESQGVRVSRLK 228
Query: 134 RLRIGGFRLPSDLGIGMHVELKQ 156
R+R G LPS L +G EL Q
Sbjct: 229 RVRYGPIFLPSRLTMGRWEELDQ 251
>gi|329769599|ref|ZP_08261003.1| hypothetical protein HMPREF0433_00767 [Gemella sanguinis M325]
gi|328838354|gb|EGF87963.1| hypothetical protein HMPREF0433_00767 [Gemella sanguinis M325]
Length = 243
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R+ VGRLD T+G +I++NDG+F ++HP K++K Y+A I G ++ RHL + G
Sbjct: 94 ERVVPVGRLDYDTSGALIMSNDGEFINLITHPRHKIKKTYVAKISGKLDDRHLKILRSGV 153
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
I+ P V ++ + +R+ +HEG+N ++R + + G ++ LKR
Sbjct: 154 RIDNYKTAPAEVNIVKNKNKSSNTLVRLTIHEGKNRQIRRMFETLGYEVLKLKR 207
>gi|291542267|emb|CBL15377.1| ribosomal large subunit pseudouridine synthase B [Ruminococcus
bromii L2-63]
Length = 249
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 11/137 (8%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD + G+++ TNDGDFA V HP + + K Y T+ ++++ L+ + G
Sbjct: 101 RVYPIGRLDKDSEGMLVFTNDGDFANKVMHPKNNVYKIYRVTVRPSIDEDQLVKLETGVE 160
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V ++ + R + +++HEG+N E+R + + GL++ LKR +IGG +
Sbjct: 161 LDGRKTAPAYVHVIHKEQG--RVVLEMILHEGKNREIRRMCEAVGLEVARLKRTQIGGVK 218
Query: 142 LPSDLGIGMHVELKQSD 158
+ GM LKQ D
Sbjct: 219 M------GM---LKQGD 226
>gi|22537618|ref|NP_688469.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae 2603V/R]
gi|76787384|ref|YP_330112.1| RNA pseudouridine synthase [Streptococcus agalactiae A909]
gi|76797639|ref|ZP_00779909.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae 18RS21]
gi|406709866|ref|YP_006764592.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae GD201008-001]
gi|424049072|ref|ZP_17786623.1| RNA pseudouridine synthase [Streptococcus agalactiae ZQ0910]
gi|22534503|gb|AAN00342.1|AE014259_13 ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae 2603V/R]
gi|76562441|gb|ABA45025.1| RNA pseudouridine synthase family protein [Streptococcus agalactiae
A909]
gi|76587000|gb|EAO63488.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae 18RS21]
gi|389649272|gb|EIM70754.1| RNA pseudouridine synthase [Streptococcus agalactiae ZQ0910]
gi|406650751|gb|AFS46152.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae GD201008-001]
Length = 240
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 73/127 (57%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ TTGL+++TN+G+ A + P + K Y I G + + ++A +G ++
Sbjct: 96 VFPVGRLDIDTTGLLLLTNNGELAHKMLSPKKHVDKCYEVKISGIMTEDDILAFDKGIIL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P ++E++ + ++I + EG+ H+V+ +V G ++ LKRLR+G +L
Sbjct: 156 KDFTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLRMGNLQL 215
Query: 143 PSDLGIG 149
L G
Sbjct: 216 DKQLESG 222
>gi|354580542|ref|ZP_08999447.1| pseudouridine synthase [Paenibacillus lactis 154]
gi|353202973|gb|EHB68422.1| pseudouridine synthase [Paenibacillus lactis 154]
Length = 253
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG A + P + K Y A ++G V++ + S G ++
Sbjct: 105 FPVGRLDKDTEGLLLLTNDGKLAHELLSPRKHVPKTYQAIVEGRVDEEDIRQFSRGVTLD 164
Query: 84 GTHCT-PD--VVELLPPQPDIP-RPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T P V++ L Q D R RI + +HEG+ H+V+ + + G K+ LKR+ +G
Sbjct: 165 DGYVTLPSELVIDALEEQGDGSIRSRITLTIHEGKFHQVKRMFEAVGKKVIYLKRISMGT 224
Query: 140 FRLPSDLGIGMHVELKQSDLKLMG 163
RL L IG + EL +++L +G
Sbjct: 225 LRLDESLEIGSYRELTKAELAGIG 248
>gi|387625763|ref|YP_006061935.1| putative ribosomal small subunit pseudouridine synthase B
[Streptococcus pneumoniae INV104]
gi|421224160|ref|ZP_15680906.1| hypothetical protein AMCSP06_000280 [Streptococcus pneumoniae
2070768]
gi|444383899|ref|ZP_21182075.1| pseudouridylate synthase [Streptococcus pneumoniae PCS8106]
gi|444385782|ref|ZP_21183851.1| pseudouridylate synthase [Streptococcus pneumoniae PCS8203]
gi|301793545|emb|CBW35921.1| putative ribosomal small subunit pseudouridine synthase B
[Streptococcus pneumoniae INV104]
gi|395591496|gb|EJG51791.1| hypothetical protein AMCSP06_000280 [Streptococcus pneumoniae
2070768]
gi|444248041|gb|ELU54561.1| pseudouridylate synthase [Streptococcus pneumoniae PCS8106]
gi|444249099|gb|ELU55594.1| pseudouridylate synthase [Streptococcus pneumoniae PCS8203]
Length = 240
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
M L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 MDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|77405184|ref|ZP_00782282.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae H36B]
gi|77411049|ref|ZP_00787403.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae CJB111]
gi|77162872|gb|EAO73829.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae CJB111]
gi|77176186|gb|EAO78957.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae H36B]
Length = 240
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 73/127 (57%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ TTGL+++TN+G+ A + P + K Y A I G + + ++A +G ++
Sbjct: 96 VFPVGRLDIDTTGLLLITNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIIL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P ++E++ + ++I + EG+ H+V+ +V G ++ LKRL +G +L
Sbjct: 156 KDFTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLSMGNLQL 215
Query: 143 PSDLGIG 149
L G
Sbjct: 216 DKQLESG 222
>gi|251779623|ref|ZP_04822543.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243083938|gb|EES49828.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 236
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R++ +GRLD ++GLI++TNDGD + HP +L K+YIA + G V+K+ + A ++G
Sbjct: 95 ERIYPIGRLDYDSSGLILLTNDGDIYNKIIHPREELNKKYIAVVKGEVSKKDIDAFNKGI 154
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I G P +E+L + + + + +HEG+N ++R++ ++ SL R+ IG
Sbjct: 155 DIGGYVTAPASLEVLSYEN--GKSTVEVCIHEGKNRQIRKMCTAINHEVLSLNRVSIGEI 212
Query: 141 RL 142
+L
Sbjct: 213 QL 214
>gi|431927134|ref|YP_007240168.1| pseudouridine synthase family protein [Pseudomonas stutzeri RCH2]
gi|431825421|gb|AGA86538.1| pseudouridine synthase family protein [Pseudomonas stutzeri RCH2]
Length = 377
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 105 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 164
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 165 RLKTGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 222
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ QS++ ++
Sbjct: 223 RVRFGPVFMTSDLPMGRWREMSQSEVDIL 251
>gi|15606629|ref|NP_214009.1| hypothetical protein aq_1464 [Aquifex aeolicus VF5]
gi|3915445|sp|O67444.1|Y1464_AQUAE RecName: Full=Uncharacterized RNA pseudouridine synthase aq_1464;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|2983856|gb|AAC07410.1| hypothetical protein aq_1464 [Aquifex aeolicus VF5]
Length = 249
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD T GL+I+TNDG+ A + HP KL K Y+A ++G V+++ L + +G
Sbjct: 98 RVFPVGRLDYNTEGLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIE 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E PD + ++ + + + I HEGR H V+ + G K+ LKR+ IG +
Sbjct: 158 LEDGFAKPDNIRIV--RYEGKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIK 215
Query: 142 LPSDLGIGMHVELKQSDL 159
L L G EL Q +L
Sbjct: 216 L-GKLSPGKWRELNQGEL 232
>gi|313893433|ref|ZP_07827005.1| pseudouridine synthase B, ribosomal large subunit [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442074|gb|EFR60494.1| pseudouridine synthase B, ribosomal large subunit [Veillonella sp.
oral taxon 158 str. F0412]
Length = 242
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY+K+ KR ++ VGRLD+ T GL+++TNDG+ AQ ++HPS ++K Y I
Sbjct: 87 DYIKNESKR--------IYPVGRLDLYTEGLLLLTNDGELAQNLTHPSKGVEKTYEVRIK 138
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G V L I+ G +E P + L + I +HEGRN +VR + ++
Sbjct: 139 GRVRDEDLQVIANGVKLEDGMTAPATIVDLGFDDHNGVHEVEITIHEGRNRQVRRMFEHF 198
Query: 126 GLKLYSLKRLRIGGFRL 142
G ++++LKR+ G L
Sbjct: 199 GYRIHNLKRIAYAGLTL 215
>gi|407008667|gb|EKE23989.1| hypothetical protein ACD_6C00271G0001, partial [uncultured
bacterium]
Length = 271
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P +P R VGRLD+ +TGL++ TNDG+ A + HPS+++++EY + G V +
Sbjct: 94 PAIPGDRWVMVGRLDINSTGLLLFTNDGELANRLMHPSNEIEREYAVRVMGEVTPQIRNN 153
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G V++ + L D ++VV EGRN EVR + ++ GLK+ L R
Sbjct: 154 MLKGVVLDDGPAKFESFSELG--GDGINRWFQVVVKEGRNREVRRIFESQGLKVSRLLRT 211
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
R G LP +L G +EL ++D+
Sbjct: 212 RYGTVILPRELRTGRWIELDKNDI 235
>gi|146306872|ref|YP_001187337.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
mendocina ymp]
gi|421503640|ref|ZP_15950586.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
mendocina DLHK]
gi|145575073|gb|ABP84605.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
mendocina ymp]
gi|400345467|gb|EJO93831.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
mendocina DLHK]
Length = 385
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V + L
Sbjct: 102 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYQMDREYAVRVRGEVTEEMLE 161
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ +G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 162 NLKKGVMLEDGPAKFTDIKEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 219
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 220 RVRFGPVFLTSDLTMGRWREMDQREVDIL 248
>gi|191638365|ref|YP_001987531.1| pseudouridine synthase [Lactobacillus casei BL23]
gi|385820066|ref|YP_005856453.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei LC2W]
gi|385823267|ref|YP_005859609.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei BD-II]
gi|409997230|ref|YP_006751631.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei W56]
gi|417986735|ref|ZP_12627300.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei 32G]
gi|190712667|emb|CAQ66673.1| Pseudouridine synthase [Lactobacillus casei BL23]
gi|327382393|gb|AEA53869.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei LC2W]
gi|327385594|gb|AEA57068.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei BD-II]
gi|406358242|emb|CCK22512.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei W56]
gi|410524469|gb|EKP99377.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei 32G]
Length = 247
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGD A + HP L+K+Y+A + G N+ L + G
Sbjct: 98 RLYPVGRLDYDTSGLLVMTNDGDLANHLMHPRYALEKKYVAKVQGVPNRPALAPLKTGVE 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V+++ + + +H+G NH+V+++ K G + L R G
Sbjct: 158 VDGKMTAPAKVDIISTDKAKKTAIVSLTIHQGMNHQVKKMFKAVGFPVLKLSREAYGNLT 217
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G H +K +L+ +
Sbjct: 218 LVG-LQPGEHRPIKPQELQAL 237
>gi|163783757|ref|ZP_02178743.1| hypothetical protein HG1285_01633 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881003|gb|EDP74521.1| hypothetical protein HG1285_01633 [Hydrogenivirga sp. 128-5-R1-1]
Length = 244
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD T GL+++TNDG+ A V HP KL K Y+A + G V+K L + G
Sbjct: 97 RVFPVGRLDYNTEGLLLLTNDGELANRVLHPRYKLPKVYLALVKGKVSKNTLRKMKHGAE 156
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E PD V ++ + D + IV HEGR H V+ + + G + LKR+ +G +
Sbjct: 157 LEDGFAKPDDVRIVRYEGD--NTLLEIVFHEGRKHIVKRFLASFGHPVIKLKRIALGTLK 214
Query: 142 LPSDLGIGMHVELKQSDLK 160
L L G EL Q +L+
Sbjct: 215 L-GKLPPGKWRELSQRELR 232
>gi|322376975|ref|ZP_08051468.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
M334]
gi|321282782|gb|EFX59789.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
M334]
Length = 241
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Query: 12 DKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKR 71
D +P + +L+ VGRLD TTGL++VT++G + HP + K Y ++G +
Sbjct: 84 DLLSPDIQSDKLYAVGRLDRDTTGLLLVTDNGPLGFQLLHPQYHVDKTYRVEVNGLLTPD 143
Query: 72 HLIAISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLY 130
H+ A +G V ++GT C P +E+L P + + I I EG+ H+V+++ + G+K+
Sbjct: 144 HIQAFQKGIVFLDGTVCKPARLEILSASPSLSQASITI--SEGKFHQVKKMFLSVGVKVT 201
Query: 131 SLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
SLKR G + L +L G + L +L
Sbjct: 202 SLKRTHFGPWSLDENLQAGDYRPLNSEEL 230
>gi|268610237|ref|ZP_06143964.1| pseudouridine synthase [Ruminococcus flavefaciens FD-1]
Length = 247
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD + GL++ TNDG+FA ++ HPS + K Y T+ ++ LI +SEG
Sbjct: 102 RVYPVGRLDRNSEGLLLFTNDGEFANSIMHPSRHISKTYRVTVRPDISDEQLIQLSEGVE 161
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + QP R + + + EGRN ++R++ + GL++ L+R IG +
Sbjct: 162 IDGKRTLPATVIVKDKQPG--RVVLLMTIKEGRNRQIRKMCEAVGLEVARLRRTSIGPIK 219
Query: 142 L 142
L
Sbjct: 220 L 220
>gi|77409420|ref|ZP_00786117.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae COH1]
gi|421147214|ref|ZP_15606905.1| hypothetical protein GB112_04980 [Streptococcus agalactiae GB00112]
gi|77171978|gb|EAO75150.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae COH1]
gi|401686159|gb|EJS82148.1| hypothetical protein GB112_04980 [Streptococcus agalactiae GB00112]
Length = 240
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 73/127 (57%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ TTGL+++TN+G+ A + P + K Y A I G + + ++A +G ++
Sbjct: 96 VFPVGRLDIDTTGLLLITNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIIL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P ++E++ + ++I + EG+ H+V+ +V G ++ LKRL +G +L
Sbjct: 156 KDFTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLSMGNLQL 215
Query: 143 PSDLGIG 149
L G
Sbjct: 216 DKQLESG 222
>gi|419780580|ref|ZP_14306427.1| pseudouridylate synthase [Streptococcus oralis SK100]
gi|383185178|gb|EIC77677.1| pseudouridylate synthase [Streptococcus oralis SK100]
Length = 245
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 77/137 (56%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ T GL+++TNDG A A+ P + K Y+A + G + + + A ++G +
Sbjct: 96 VFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTYLAQVKGIMTQEDVDAFAKGIPL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +EL+ P+ + +R+ + EG+ H+V+ +V G ++ L+RL +G L
Sbjct: 156 KDFTCQPTRLELVSVDPEKNQSLVRVTIAEGKFHQVKRMVAYCGKEVVDLQRLTMGTLAL 215
Query: 143 PSDLGIGMHVELKQSDL 159
+L G L + +L
Sbjct: 216 DENLERGEWRRLTKEEL 232
>gi|339448315|ref|ZP_08651871.1| pseudouridylate synthase [Lactobacillus fructivorans KCTC 3543]
Length = 241
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+I+TNDG ++HP +++K Y+ + G +N L I EG +
Sbjct: 95 RIYPVGRLDYDTSGLLILTNDGTLDFQLTHPKYEIKKTYLVKVIGKLNHEELKKIREGVL 154
Query: 82 IEGTH-CTPDVVELLPPQPDIP-RPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I G + P VE++ + +R+ +HEG+NHEV+E++K G + LKR G
Sbjct: 155 INGKYKSAPAEVEVIAKAGNSKNNSMLRLTIHEGKNHEVKEMLKAVGHPVEKLKREEFAG 214
Query: 140 FRLPS 144
L +
Sbjct: 215 IGLEN 219
>gi|427414344|ref|ZP_18904534.1| pseudouridine synthase [Veillonella ratti ACS-216-V-Col6b]
gi|425714720|gb|EKU77723.1| pseudouridine synthase [Veillonella ratti ACS-216-V-Col6b]
Length = 284
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 13/159 (8%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DYLK D +N R++ VGRLD T GL++ TNDG AQA+ HPS + K Y +
Sbjct: 89 DYLK--DIKN------RVYPVGRLDYNTEGLLLFTNDGALAQALMHPSQGVTKTYEVKLK 140
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVK 123
G V HL A+S G +E +P E++ D+ + + +HEGRN +VR + +
Sbjct: 141 GRVLDEHLEALSTGVTLEDGPTSP--AEIVDYGFDVKTNTTLVEVTIHEGRNRQVRRMFE 198
Query: 124 NAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+ +Y+LKR+ GG L + L G + +L +L+ +
Sbjct: 199 HFKYSVYNLKRIAYGGLTL-TGLKRGAYRKLTGEELRQL 236
>gi|288818760|ref|YP_003433108.1| pseudouridine synthase [Hydrogenobacter thermophilus TK-6]
gi|384129510|ref|YP_005512123.1| pseudouridine synthase [Hydrogenobacter thermophilus TK-6]
gi|288788160|dbj|BAI69907.1| pseudouridine synthase [Hydrogenobacter thermophilus TK-6]
gi|308752347|gb|ADO45830.1| pseudouridine synthase [Hydrogenobacter thermophilus TK-6]
Length = 253
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ GRLD GL+++TNDG+ A + HP KL+K Y+ ++G VN + L +++G
Sbjct: 102 RVYPAGRLDYNAEGLLVLTNDGELANRIMHPRYKLKKTYLVWVEGRVNPKTLKEMAKGAH 161
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E PD V ++ Q D + +V HEGR H V+ + G K+ +LKR IG +
Sbjct: 162 LEDGFARPDKVRIVKMQKD--STLLEVVFHEGRKHIVKRFMAKFGHKVKALKRTAIGPIK 219
Query: 142 L 142
L
Sbjct: 220 L 220
>gi|269797888|ref|YP_003311788.1| pseudouridine synthase [Veillonella parvula DSM 2008]
gi|269094517|gb|ACZ24508.1| pseudouridine synthase [Veillonella parvula DSM 2008]
Length = 242
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 8/137 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY+K+ KR ++ +GRLD+ T GL+++TNDG+FAQ ++HPS ++K Y I
Sbjct: 87 DYIKNETKR--------IYPIGRLDLYTEGLLLLTNDGEFAQNLTHPSKGVEKTYEVRIK 138
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G V L I+ G +E P + L + I +HEGRN +VR + ++
Sbjct: 139 GRVRDDDLQIIANGVELEDGITAPATIVDLGFDDHNGVHEVEITIHEGRNRQVRRMFEHF 198
Query: 126 GLKLYSLKRLRIGGFRL 142
G ++++LKR+ G L
Sbjct: 199 GYRIHNLKRIAYAGLTL 215
>gi|119716723|ref|YP_923688.1| ribosomal large subunit pseudouridine synthase B [Nocardioides sp.
JS614]
gi|119537384|gb|ABL82001.1| ribosomal large subunit pseudouridine synthase B [Nocardioides sp.
JS614]
Length = 251
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Query: 20 RP-RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
RP RLF VGRLD T+GL+++TNDGDFA ++HPS ++ K Y+A ++G V +R + + E
Sbjct: 105 RPERLFHVGRLDTDTSGLLLLTNDGDFAHRMAHPSYEVDKTYVAEVEGEVYRRTIKQLLE 164
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
G ++ T ++ + + + +V+HEGRN VR L+ G + L R IG
Sbjct: 165 GVTLDDGPVTVSKARIV--EATAAKSIVELVIHEGRNRIVRRLLDQVGHPVRRLTRTAIG 222
Query: 139 GF---RLPS 144
RLPS
Sbjct: 223 PVSLGRLPS 231
>gi|407892663|ref|ZP_11151693.1| ribosomal large subunit pseudouridine synthase B [Diplorickettsia
massiliensis 20B]
Length = 244
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLD+ T GL++ TNDG+ A +SHPS ++++EY I G+V+K L
Sbjct: 91 RLPTLIGQRWIMVGRLDINTLGLLLFTNDGELAHRLSHPSYEIEREYAVRILGSVDKVML 150
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ EG +E +E Q +V+ EGRN EVR L ++ G+ + L
Sbjct: 151 RRLKEGVHLEDGLAAFTQIEAQEGQG--ANRWYHVVLKEGRNREVRRLWESQGVVVSRLI 208
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLMG 163
R+R LP+ L G +EL S++ +
Sbjct: 209 RIRFASIGLPNHLKRGQWLELSASEVNQLA 238
>gi|116494858|ref|YP_806592.1| 16S rRNA uridine-516 pseudouridylate synthase related enzyme
[Lactobacillus casei ATCC 334]
gi|227535145|ref|ZP_03965194.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|417983445|ref|ZP_12624082.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei 21/1]
gi|417989623|ref|ZP_12630125.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei A2-362]
gi|417992880|ref|ZP_12633232.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei CRF28]
gi|417996234|ref|ZP_12636516.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei M36]
gi|417999063|ref|ZP_12639276.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei T71499]
gi|418002001|ref|ZP_12642128.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei UCD174]
gi|418005074|ref|ZP_12645073.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei UW1]
gi|418007965|ref|ZP_12647836.1| pseudouridylate synthase [Lactobacillus casei UW4]
gi|418015241|ref|ZP_12654816.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei Lpc-37]
gi|116105008|gb|ABJ70150.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei ATCC 334]
gi|227187190|gb|EEI67257.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|410528192|gb|EKQ03051.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei 21/1]
gi|410532671|gb|EKQ07373.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei CRF28]
gi|410535692|gb|EKQ10307.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei M36]
gi|410537716|gb|EKQ12286.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei A2-362]
gi|410540003|gb|EKQ14525.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei T71499]
gi|410545152|gb|EKQ19457.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei UCD174]
gi|410547724|gb|EKQ21950.1| pseudouridylate synthase [Lactobacillus casei UW4]
gi|410547852|gb|EKQ22076.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei UW1]
gi|410551717|gb|EKQ25760.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei Lpc-37]
Length = 247
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGD A + HP L+K+Y+A + G N+ L + G
Sbjct: 98 RLYPVGRLDYDTSGLLVMTNDGDLANHLMHPRYALEKKYVAKVQGVPNRPALAPLKTGVE 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V+++ + + +H+G NH+V+++ K G + L R G
Sbjct: 158 VDGKMTAPAKVDIISTDKAKKTAIVSLTIHQGMNHQVKKMFKAVGFPVLKLSREAYGNLT 217
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G H +K +L+ +
Sbjct: 218 LVG-LQPGEHRPIKPQELQAL 237
>gi|389817622|ref|ZP_10208215.1| pseudouridine synthase [Planococcus antarcticus DSM 14505]
gi|388464390|gb|EIM06721.1| pseudouridine synthase [Planococcus antarcticus DSM 14505]
Length = 243
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+I+TNDG+FA ++HP ++ K Y+A + G K L + G
Sbjct: 94 RIYPVGRLDYDTSGLLIMTNDGEFANMLTHPKFEIDKTYVARLKGIPEKDDLKKLERGIK 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V+LL + ++I +HEGRN +VR + + G + L R +
Sbjct: 154 LEDGMTAPAKVKLLSGDKKTGKAIVQITIHEGRNRQVRRMFEAIGYPVQKLSREQFAFLT 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G EL ++KL+
Sbjct: 214 LHG-LNAGESRELSAHEVKLL 233
>gi|312110375|ref|YP_003988691.1| pseudouridine synthase [Geobacillus sp. Y4.1MC1]
gi|336234837|ref|YP_004587453.1| pseudouridine synthase Rsu [Geobacillus thermoglucosidasius
C56-YS93]
gi|423719393|ref|ZP_17693575.1| ribosomal large subunit pseudouridine synthase B [Geobacillus
thermoglucosidans TNO-09.020]
gi|311215476|gb|ADP74080.1| pseudouridine synthase [Geobacillus sp. Y4.1MC1]
gi|335361692|gb|AEH47372.1| pseudouridine synthase Rsu [Geobacillus thermoglucosidasius
C56-YS93]
gi|383367698|gb|EID44974.1| ribosomal large subunit pseudouridine synthase B [Geobacillus
thermoglucosidans TNO-09.020]
Length = 243
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D+ K DKR ++ VGRLD T+G++++TNDGDFA + HP +++K YIA +
Sbjct: 86 DFFKDIDKR--------IYPVGRLDYDTSGILLLTNDGDFANLLMHPRYEIEKVYIAKVK 137
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
+ L + +G ++E P V+LL I I +HEGRN +VR + +
Sbjct: 138 KIPTREQLKQLEKGIMLEDGMTAPAKVKLLSHDKQKQTAIIEIRIHEGRNRQVRRMFEAI 197
Query: 126 GLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
G + LKR R L L G + EL ++K
Sbjct: 198 GCNVMKLKRERYAFLDLKG-LNPGEYRELTPHEVK 231
>gi|239631549|ref|ZP_04674580.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|301066420|ref|YP_003788443.1| 16S rRNA uridine-516 pseudouridylate synthase [Lactobacillus casei
str. Zhang]
gi|417980657|ref|ZP_12621337.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei 12A]
gi|239526014|gb|EEQ65015.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|300438827|gb|ADK18593.1| 16S rRNA uridine-516 pseudouridylate synthase related enzyme
[Lactobacillus casei str. Zhang]
gi|410524980|gb|EKP99887.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei 12A]
Length = 247
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGD A + HP L+K+Y+A + G N+ L + G
Sbjct: 98 RLYPVGRLDYDTSGLLVMTNDGDLANHLMHPRYALEKKYVAKVQGVPNRPALAPLKTGVE 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V+++ + + +H+G NH+V+++ K G + L R G
Sbjct: 158 VDGKMTAPAKVDIISTDKAKKTAIVSLTIHQGMNHQVKKMFKAVGFPVLKLSREAYGNLT 217
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G H +K +L+ +
Sbjct: 218 LVG-LQPGEHRPIKPQELQAL 237
>gi|258645939|ref|ZP_05733408.1| ribosomal large subunit pseudouridine synthase B [Dialister invisus
DSM 15470]
gi|260403308|gb|EEW96855.1| ribosomal large subunit pseudouridine synthase B [Dialister invisus
DSM 15470]
Length = 239
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 2/141 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R R+F VGRLD + GL++VTNDG ++HP ++QKEY + G +++ + +G
Sbjct: 94 RERVFPVGRLDYHSEGLLLVTNDGQLDFILTHPCHEVQKEYEVVVRGKFSEKLAKKMEKG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+ P +E+L + + R+R+V+HEG+N E+R++++ ++ LKR+R
Sbjct: 154 VKIDSGVTAPCEIEVLGYDAEKNKTRLRMVLHEGKNREIRKMMEIFHYPVFELKRIRYSF 213
Query: 140 FRLPSDLGIGMHVELKQSDLK 160
L D+ G + L +++K
Sbjct: 214 LTL--DVNRGQYRRLTAAEVK 232
>gi|90961915|ref|YP_535831.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
salivarius UCC118]
gi|301299322|ref|ZP_07205607.1| pseudouridine synthase B, ribosomal large subunit [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|385840517|ref|YP_005863841.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
gi|90821109|gb|ABD99748.1| Ribosomal large subunit pseudouridine synthase B [Lactobacillus
salivarius UCC118]
gi|300214638|gb|ADJ79054.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
gi|300853062|gb|EFK80661.1| pseudouridine synthase B, ribosomal large subunit [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 242
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+I+TNDGDFA + HP K+ K Y+A ++G + + + G V
Sbjct: 96 RLYPVGRLDYDTSGLLILTNDGDFANQMMHPRYKVDKTYVAKVEGLITPDSIKKLRNGVV 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G + ++L + + +HEGR H+V+++ G K+ L R G
Sbjct: 156 IDGKPTSRARAKILSRDAKKNTSIVSLTIHEGRYHQVKKMFDAVGHKVQKLSRTTYGTLT 215
Query: 142 LPSDLGIGMHVELKQSDLK 160
L L G + EL ++++
Sbjct: 216 LDG-LTSGEYRELSHNEVR 233
>gi|241889378|ref|ZP_04776679.1| ribosomal small subunit pseudouridine synthase A [Gemella
haemolysans ATCC 10379]
gi|241863921|gb|EER68302.1| ribosomal small subunit pseudouridine synthase A [Gemella
haemolysans ATCC 10379]
Length = 235
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
++F VGRLD T GL+++TNDG+ A + P + K+Y + G + + HL I G
Sbjct: 94 KVFPVGRLDKDTEGLMLLTNDGELAHRLISPKKDVVKKYYVEVSGELKEEHLPIIEAGVT 153
Query: 82 IE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+E G C +E+L D + I I EG+ H+V+ ++K+ G + LKRL IG
Sbjct: 154 LEDGYKCKAAKLEILESNEDESKANIYIT--EGKFHQVKRMMKSLGTTVTYLKRLSIGSL 211
Query: 141 RLPSDLGIGMHVELKQSDL 159
+L +L +G + L + +L
Sbjct: 212 KLDENLKLGDYRYLTEEEL 230
>gi|295426293|ref|ZP_06818953.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
amylolyticus DSM 11664]
gi|295064032|gb|EFG54980.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
amylolyticus DSM 11664]
Length = 239
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDG A + HP +++ K Y+A I+G + ++ + +G
Sbjct: 96 RLYPVGRLDYDTSGLLLMTNDGKLANLLMHPKNEVPKVYVAKIEGILEPDQIMTLKKGVK 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G C P V++L +++ +HEG HEV+ + K G + L R R
Sbjct: 156 VDGRKCAPAKVKILKTNQKKNNQIVQLTIHEGHYHEVKRMFKAVGHPVEKLSRERYAFLD 215
Query: 142 LPSDLGIGMHVELKQSDL 159
L + L G + EL + ++
Sbjct: 216 LHA-LTYGQYRELTREEV 232
>gi|309798788|ref|ZP_07693052.1| RNA pseudouridine synthase family protein [Streptococcus infantis
SK1302]
gi|308117605|gb|EFO55017.1| RNA pseudouridine synthase family protein [Streptococcus infantis
SK1302]
Length = 241
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L +L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+
Sbjct: 90 LQSDQLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGPLTPDHIQEFK 149
Query: 78 EGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+G + ++GT C P +E+L P + + I I EG+ H+V+++ + G+K+ +LKR++
Sbjct: 150 DGIIFLDGTICKPAQLEILSSSPSLSKATITI--SEGKFHQVKKMFLSVGVKVTALKRVQ 207
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G F L DL G L + +L+L+
Sbjct: 208 FGNFILNPDLAEGDFRLLNKEELQLI 233
>gi|169334035|ref|ZP_02861228.1| hypothetical protein ANASTE_00428 [Anaerofustis stercorihominis DSM
17244]
gi|169258752|gb|EDS72718.1| pseudouridylate synthase [Anaerofustis stercorihominis DSM 17244]
Length = 238
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G RLF VGRLD TTGLII+TNDGDFA ++HP + +K Y A + G V+ + L +
Sbjct: 94 GKKEHRLFPVGRLDKDTTGLIILTNDGDFAYKLTHPKYEKEKTYEALVKGKVDSKSLDKL 153
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+G VI+G + V L+ + I + EGR +V+++ + G K+ L R
Sbjct: 154 KQGVVIDGKKTSRAKVRLVKMIG--VNSLVEITLIEGRKRQVKKMCEKVGHKVIKLNRTM 211
Query: 137 IGGFRLPSDLGIGMHVELKQSDL 159
G L DL IG + +L ++++
Sbjct: 212 ENGLSL-GDLEIGEYRKLTKNEV 233
>gi|238019398|ref|ZP_04599824.1| hypothetical protein VEIDISOL_01262 [Veillonella dispar ATCC 17748]
gi|237864097|gb|EEP65387.1| hypothetical protein VEIDISOL_01262 [Veillonella dispar ATCC 17748]
Length = 242
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY+K+ KR ++ +GRLD+ T GL+++TNDG+ AQ ++HPS ++K Y I
Sbjct: 87 DYIKNESKR--------IYPIGRLDLYTEGLLLLTNDGELAQNLTHPSKGVEKTYEVRIK 138
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G V L I+ G +E P + L + I +HEGRN +VR + ++
Sbjct: 139 GRVRDEDLQVIANGVKLEDGMTAPATIVDLGFDDHNGVHEVEITIHEGRNRQVRRMFEHF 198
Query: 126 GLKLYSLKRLRIGGFRL 142
G ++++LKR+ G L
Sbjct: 199 GYRIHNLKRIAYAGLTL 215
>gi|270292060|ref|ZP_06198275.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
M143]
gi|270279588|gb|EFA25430.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
M143]
Length = 240
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDVARSKE----------VFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A ++G + + + +EG ++ C P +EL+ P+ + +R+ + EG+ H+V+
Sbjct: 134 LAQVEGIMTQEDVETFAEGIPLKDFTCQPARLELVSVDPEKNQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIG 149
+V G ++ L+RL +G L L G
Sbjct: 194 MVAYCGKEVVDLQRLTMGALILDEKLKRG 222
>gi|163791509|ref|ZP_02185915.1| RluB [Carnobacterium sp. AT7]
gi|159873232|gb|EDP67330.1| RluB [Carnobacterium sp. AT7]
Length = 244
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG +++TNDG+ +Q + HP ++ K Y+A + G V+++ L + +G V
Sbjct: 94 RIYPVGRLDYDTTGALMLTNDGELSQLLMHPKYQINKTYVAKVKGLVDRKALNKLEKGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+EG P ++L + + +HEGRN +V+ + + G + LKR G
Sbjct: 154 VEGKKTAPAKAKILSADRAKDITMVELTIHEGRNRQVKNMFQAIGHPVEKLKRESYGTLN 213
Query: 142 LPSDLGIGMHVELKQSDL 159
L L G ELK ++
Sbjct: 214 LDG-LQTGEWRELKTFEI 230
>gi|259046873|ref|ZP_05737274.1| ribosomal large subunit pseudouridine synthase B [Granulicatella
adiacens ATCC 49175]
gi|259036496|gb|EEW37751.1| ribosomal large subunit pseudouridine synthase B [Granulicatella
adiacens ATCC 49175]
Length = 241
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Query: 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYI 61
++ DY K ++R ++ VGRLD TTGL+++TNDG+F+ ++HP ++K+YI
Sbjct: 82 TVVTDYFKDVEQR--------VYPVGRLDYDTTGLLLLTNDGEFSNLMTHPKHHVEKKYI 133
Query: 62 ATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVREL 121
A + G R + + G V++G + + ++L D + + +HEG NH+V+ +
Sbjct: 134 AKVKGIPTPRQMRQLERGIVLDGKKTSNAIAQILSVDTDKGTGIVALTIHEGWNHQVKRM 193
Query: 122 VKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+ L + LKR GF +L G + EL+ +++
Sbjct: 194 FEAVELPVMKLKREEF-GFLTLENLRPGDYRELRSFEVQ 231
>gi|420157396|ref|ZP_14664231.1| pseudouridylate synthase [Clostridium sp. MSTE9]
gi|394756214|gb|EJF39328.1| pseudouridylate synthase [Clostridium sp. MSTE9]
Length = 245
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 15/157 (9%)
Query: 9 KSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAV 68
+ W +R LF GRLD T GL+I+TNDGD+A + P K++K Y A +D +
Sbjct: 92 QEWQRRG-------LFPAGRLDKDTEGLLILTNDGDYAHKMLSPKKKVEKIYDAVLDLPI 144
Query: 69 NKRHLIAISEGTVIEGTHCTPDVVELLPP----QPDIPRPR-IRIVVHEGRNHEVRELVK 123
+ + ++A S G ++ P + +LPP + P R +R+ +HEG+ H+V+ +
Sbjct: 145 DSQDILAFSVGVKMKDFEALPAKLSVLPPELADEKITPLQRQVRVCIHEGKFHQVKRMFM 204
Query: 124 NAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
G + +L+R++IG +L +L G E++Q K
Sbjct: 205 ARGKTVLALRRVQIGSLKLDPNLSPG---EIRQMTAK 238
>gi|335048394|ref|ZP_08541414.1| putative 16S pseudouridylate 516 synthase [Parvimonas sp. oral
taxon 110 str. F0139]
gi|333758194|gb|EGL35752.1| putative 16S pseudouridylate 516 synthase [Parvimonas sp. oral
taxon 110 str. F0139]
Length = 235
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
LF VGRLD+ TTG +I+TNDG F+ V++P K+ K+Y T+ + + + G
Sbjct: 97 ELFPVGRLDIDTTGFLILTNDGKFSYNVTNPKKKVNKKYFVTLRDEITSEQIEKLENGIY 156
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
E T + ++ I I + + EG+ H+V+ +++ G ++ LKR+ IG
Sbjct: 157 FEKEDFTTENAKV----EKISEKEINLTISEGKFHQVKRMLEYVGNEVVELKRVCIGNLN 212
Query: 142 LPSDLGIGMHVELKQSDLK 160
L L +G + E+ S+L+
Sbjct: 213 LDDSLQLGEYREITNSELE 231
>gi|323489657|ref|ZP_08094884.1| pseudouridine synthase [Planococcus donghaensis MPA1U2]
gi|323396788|gb|EGA89607.1| pseudouridine synthase [Planococcus donghaensis MPA1U2]
gi|456012539|gb|EMF46227.1| Ribosomal large subunit pseudouridine synthase B [Planococcus
halocryophilus Or1]
Length = 243
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+I+TNDG+FA ++HP ++ K Y+A + G K L + G
Sbjct: 94 RIYPVGRLDYDTSGLLIMTNDGEFANMLTHPKFEIDKTYVARLKGIPEKDDLRKLERGIK 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V+LL + ++I +HEGRN +VR + + G + L R + F
Sbjct: 154 LEDGMTAPAKVKLLSGDKKTGKAIVQITIHEGRNRQVRRMFEAIGYPVQKLSREQF-AFL 212
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L G EL ++KL+
Sbjct: 213 TLHGLNAGESRELSAHEVKLL 233
>gi|398814603|ref|ZP_10573283.1| pseudouridine synthase family protein [Brevibacillus sp. BC25]
gi|398036312|gb|EJL29528.1| pseudouridine synthase family protein [Brevibacillus sp. BC25]
Length = 239
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 26 VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGT 85
VGRLD+ T GL+++TNDG + ++ P K+ KEY A IDG V + H+ ++G +E
Sbjct: 101 VGRLDIDTEGLLLLTNDGQLSHSLLSPKKKVDKEYFAHIDGRVTEHHVQEFAKGVELEDF 160
Query: 86 HCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSD 145
P +E+L IR+ + EG+ H+V+ + L++ L+R+R+G L
Sbjct: 161 TTLPAKLEILSSG---ETSEIRVTIMEGKFHQVKRMFAAFDLQVTYLQRIRMGPLHLDPS 217
Query: 146 LGIGMHVELKQSDLKLM 162
L G + EL + +L ++
Sbjct: 218 LAPGEYRELTEEELHML 234
>gi|312865980|ref|ZP_07726201.1| putative 16S pseudouridylate 516 synthase [Streptococcus downei
F0415]
gi|311098384|gb|EFQ56607.1| putative 16S pseudouridylate 516 synthase [Streptococcus downei
F0415]
Length = 242
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ ++F VGRLD+ TTGL+++TN+G A A+ P + K Y A ++G + ++A +G
Sbjct: 93 QKQVFPVGRLDIDTTGLLLLTNNGPLAHAMLSPKKHVAKVYQAKVEGLMTDEDVVAFGQG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++ C P +++L ++I + EG+ H+V+ +V + G K+ LKR+ +G
Sbjct: 153 IRLKDFVCRPAQLQILESDQAQGSCLVQIEIAEGKFHQVKRMVASRGKKVLELKRISMGP 212
Query: 140 FRLPSDLGIGMHVELKQSDL 159
LP DL G + L +L
Sbjct: 213 LHLPHDLSEGHYRRLSAQEL 232
>gi|222153299|ref|YP_002562476.1| ribosomal small subunit pseudouridine synthase B [Streptococcus
uberis 0140J]
gi|222114112|emb|CAR42564.1| putative ribosomal small subunit pseudouridine synthase B
[Streptococcus uberis 0140J]
Length = 239
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+++TNDG+ A + P + K Y+A +DG + ++ + A ++G
Sbjct: 93 RKSVFPVGRLDKDTHGLLLLTNDGELAHRLLSPKKHVDKVYMARVDGIMTEQDVEAFAKG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRP--RIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+ C P +L + D+ R ++RI + EG+ H+++ +V G ++ L+R+ +
Sbjct: 153 ITLSDHQCLP--AQLQIEEVDVERTCCKVRITIREGKFHQIKRMVLACGKEVTDLQRISM 210
Query: 138 GGFRLPSDLGIGMHVELKQSDLKLM 162
G +L L +G L ++++K +
Sbjct: 211 GPIQLDDSLALGAFRRLNETEMKAL 235
>gi|421532372|ref|ZP_15978735.1| hypothetical protein M3M_05112 [Streptococcus agalactiae
STIR-CD-17]
gi|403642383|gb|EJZ03232.1| hypothetical protein M3M_05112 [Streptococcus agalactiae
STIR-CD-17]
Length = 248
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 73/127 (57%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ TTGL+++TN+G+ A + P + K Y A I G + + ++A +G ++
Sbjct: 96 VFPVGRLDIDTTGLLLLTNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIIL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P ++E++ + ++I + EG+ H+V+ +V G ++ LKRL +G +L
Sbjct: 156 KDFTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLSMGNLQL 215
Query: 143 PSDLGIG 149
L G
Sbjct: 216 DKQLESG 222
>gi|343525465|ref|ZP_08762420.1| pseudouridylate synthase [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343395735|gb|EGV08273.1| pseudouridylate synthase [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 199
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 64/102 (62%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+G +I+TNDGDF + HP +++ K Y+A + G +K L +++G
Sbjct: 93 RIYPVGRLDWDTSGALILTNDGDFTDEMIHPRNEIDKVYVARVKGVADKEILRPLTKGVK 152
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVK 123
I+G P V E+L P R I++ +HEGRNH+V+ ++
Sbjct: 153 IDGKKTKPAVYEILKVDPVKNRSIIQLTIHEGRNHQVKRCLR 194
>gi|262375673|ref|ZP_06068905.1| 16S rRNA uridine-516 pseudouridylate synthase [Acinetobacter
lwoffii SH145]
gi|262309276|gb|EEY90407.1| 16S rRNA uridine-516 pseudouridylate synthase [Acinetobacter
lwoffii SH145]
Length = 350
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P +P R VGRLD+ +TGL++ TNDG+ A + HPS+++++EY + G V +
Sbjct: 94 PAIPGDRWVMVGRLDINSTGLLLFTNDGELANRLMHPSNEIEREYAVRVMGEVTPQIRNN 153
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G V++ + L D ++VV EGRN EVR + ++ GLK+ L R
Sbjct: 154 MLKGVVLDDGPAKFESFSELG--GDGINRWFQVVVKEGRNREVRRIFESQGLKVSRLLRT 211
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
R G LP +L G +EL ++D+
Sbjct: 212 RYGTVILPRELRTGRWIELDKNDI 235
>gi|366162354|ref|ZP_09462109.1| ribosomal large subunit pseudouridine synthase B [Acetivibrio
cellulolyticus CD2]
Length = 235
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGL+++TNDGDF ++HP +++K Y ATI G K + + G
Sbjct: 95 RVFPVGRLDYETTGLLVLTNDGDFTHKMTHPRHEIEKTYQATIAGTPTKDEIHSFESGLE 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IE +P ++++ + I + +HEGRN +VR++ + G + +LKR+ +G
Sbjct: 155 IEDYVTSPAKLKIISTKERT--CVIEVTIHEGRNRQVRKMCEAIGHPVLALKRISLGKVT 212
Query: 142 L 142
L
Sbjct: 213 L 213
>gi|405761537|ref|YP_006702133.1| ribosomal small subunit pseudouridine synthase B [Streptococcus
pneumoniae SPNA45]
gi|404278426|emb|CCM09043.1| putative ribosomal small subunit pseudouridine synthase B
[Streptococcus pneumoniae SPNA45]
Length = 240
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEIFPVGRLDIDTYGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|317495282|ref|ZP_07953652.1| RNA pseudouridylate synthase [Gemella morbillorum M424]
gi|316914704|gb|EFV36180.1| RNA pseudouridylate synthase [Gemella morbillorum M424]
Length = 243
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 10/132 (7%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R+ VGRLD T+G +I++NDG+F ++HP K++K Y+A I+G + + HL + G
Sbjct: 94 ERVVPVGRLDYDTSGALIMSNDGEFINLITHPKHKIKKTYVAKINGKLEEHHLKILRSGV 153
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR------ 134
I+ +P V ++ + +R+ +HEG+N +VR + + G ++ LKR
Sbjct: 154 RIDNYKTSPAEVNIVKNKNKSGNTLVRLTIHEGKNRQVRRMFEALGYEVMKLKRESIEDL 213
Query: 135 ----LRIGGFRL 142
LR G +R+
Sbjct: 214 TLDGLRKGEYRI 225
>gi|423397715|ref|ZP_17374916.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG2X1-1]
gi|423408573|ref|ZP_17385722.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG2X1-3]
gi|401649761|gb|EJS67339.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG2X1-1]
gi|401657663|gb|EJS75171.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG2X1-3]
Length = 242
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P V+++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VTLEDGKTAPANVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|383937548|ref|ZP_09990801.1| pseudouridylate synthase [Streptococcus pseudopneumoniae SK674]
gi|383715564|gb|EID71517.1| pseudouridylate synthase [Streptococcus pseudopneumoniae SK674]
Length = 240
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDIARSKE----------IFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + ++G ++ C P +E+L + + +IR+ + EG+ H+V+
Sbjct: 134 LAQVKGIMTQEDVEIFAKGIPLKDFTCQPARLEILSTDAEKNQSQIRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + DL+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEDLEIL 235
>gi|328957343|ref|YP_004374729.1| ribosomal large subunit pseudouridine synthase B [Carnobacterium
sp. 17-4]
gi|328673667|gb|AEB29713.1| ribosomal large subunit pseudouridine synthase B [Carnobacterium
sp. 17-4]
Length = 251
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG +++TNDG+ +Q + HP ++ K Y+A + G V+++ L + +G V
Sbjct: 100 RIYPVGRLDYDTTGALMLTNDGELSQLLMHPKYQIDKTYVAKVKGLVDRKALNKLEKGIV 159
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG P ++L + + +HEGRN +V+ + + G + LKR G
Sbjct: 160 IEGKKTAPAKAKILSADRAKDITMVELTIHEGRNRQVKNMFQAIGHPVEKLKRESYGTLT 219
Query: 142 LPSDLGIGMHVELKQSDL 159
L L G ELK ++
Sbjct: 220 LDG-LQTGEWRELKTFEI 236
>gi|300173429|ref|YP_003772595.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
gasicomitatum LMG 18811]
gi|299887808|emb|CBL91776.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
gasicomitatum LMG 18811]
Length = 249
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD TTG++++TNDG A + HP S++ K Y+A ++G L + G V
Sbjct: 99 RVYPIGRLDYDTTGVLLLTNDGVVANQLMHPKSRVDKVYVAKVEGIATDEKLAPLKHGVV 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + D +R+++HEGRNH+++ +++ L + L R + F
Sbjct: 159 IKGRKTAPARVTIERVDKDKKTSMVRVIIHEGRNHQIKNMLQKVHLPVVKLTREQYAFFD 218
Query: 142 L 142
L
Sbjct: 219 L 219
>gi|410866614|ref|YP_006981225.1| Pseudouridine synthase [Propionibacterium acidipropionici ATCC
4875]
gi|410823255|gb|AFV89870.1| Pseudouridine synthase [Propionibacterium acidipropionici ATCC
4875]
Length = 247
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 17 GLPR-PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
G+PR RLF VGRLD T GLI++TNDG+F +SHPS K+ K Y+A ++G ++ + +
Sbjct: 98 GIPRHERLFHVGRLDTETEGLILLTNDGEFGHRLSHPSYKVLKTYLADVEGRIDAKVMRR 157
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G ++ PD V L+ Q + I +HEGRN VR ++ + + L R
Sbjct: 158 LEKGLTLDDGPVRPDKVRLV--QATDEHSLVEISLHEGRNRIVRRMMDSVAHPVRRLSRT 215
Query: 136 RIGGFRLPSDLGIG 149
IG R+ LG+G
Sbjct: 216 AIGPVRV-GRLGVG 228
>gi|317496566|ref|ZP_07954915.1| RNA pseudouridylate synthase [Gemella morbillorum M424]
gi|316913369|gb|EFV34866.1| RNA pseudouridylate synthase [Gemella morbillorum M424]
Length = 235
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG+ ++ P ++K+Y ++G + H+ + EG ++E
Sbjct: 96 FPVGRLDKDTEGLMLLTNDGNLGHQLTSPKKDVEKQYYVEVNGVLKVEHIPYLKEGIILE 155
Query: 84 -GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
G C +++L D+ + I V EG+ H+V+ ++K G ++ LKRL IG L
Sbjct: 156 DGYKCKSAKLDILT--SDVSKSTAYIYVTEGKFHQVKRMMKALGCEVTYLKRLSIGELVL 213
Query: 143 PSDLGIGMHVELKQSDLK 160
L +G + L + +LK
Sbjct: 214 DETLELGKYRYLTEQELK 231
>gi|410594877|ref|YP_006951604.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae SA20-06]
gi|410518516|gb|AFV72660.1| Ribosomal large subunit pseudouridine synthase B [Streptococcus
agalactiae SA20-06]
Length = 248
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 73/127 (57%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ TTGL+++TN+G+ A + P + K Y A I G + + ++A +G ++
Sbjct: 96 VFPVGRLDIDTTGLLLLTNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIIL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P ++E++ + ++I + EG+ H+V+ +V G ++ LKRL +G +L
Sbjct: 156 KDFTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLSMGNLQL 215
Query: 143 PSDLGIG 149
L G
Sbjct: 216 DKQLESG 222
>gi|138895852|ref|YP_001126305.1| pseudouridylate synthase [Geobacillus thermodenitrificans NG80-2]
gi|134267365|gb|ABO67560.1| Pseudouridylate synthase [Geobacillus thermodenitrificans NG80-2]
Length = 243
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD T+GL+++TNDGDFA + HP +++K Y+A + G + L +G +
Sbjct: 94 RIYPIGRLDYDTSGLLLLTNDGDFANLLMHPRYEIEKVYVAKVKGIPTREQLKQPEKGVL 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V+LL + I +HEGRN +VR + + G ++ LKR R
Sbjct: 154 LEDGITAPAKVKLLSADRKKRAAIVEISIHEGRNRQVRRMFEAIGCEVLKLKRERYAFLD 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G + EL ++KL+
Sbjct: 214 LKG-LRPGEYRELSPHEVKLL 233
>gi|270308102|ref|YP_003330160.1| RsuA family pseudouridine synthase [Dehalococcoides sp. VS]
gi|270153994|gb|ACZ61832.1| pseudouridine synthase, RsuA family [Dehalococcoides sp. VS]
Length = 249
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
LF VGRLD ATTGL+++TNDG+ ++HPS +++KEY+ +ID A+ + ++ +G ++
Sbjct: 107 LFPVGRLDEATTGLLLLTNDGELTNRLTHPSYQIEKEYLISIDAALTQADKESLEKGMLL 166
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ +P + + +P ++++HEG+ VR + + G ++ +LKR RI RL
Sbjct: 167 DDGLTSPARLSRVTDEPPY---NYKLIIHEGKKRIVRRMFAHLGYQIKALKRSRIATLRL 223
>gi|392964041|ref|ZP_10329462.1| ribosomal large subunit pseudouridine synthase B [Fibrisoma limi
BUZ 3]
gi|387846936|emb|CCH51506.1| ribosomal large subunit pseudouridine synthase B [Fibrisoma limi
BUZ 3]
Length = 615
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD TTGL+++TNDG+ A ++HPS+ ++K Y A +D + + H AI +G
Sbjct: 476 RLYPVGRLDRNTTGLLLMTNDGELADKLTHPSNNIRKIYQAELDKPITEEHFEAIQQGVE 535
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E PD + ++ P + I I +H GRN VR + ++ G ++ L R G
Sbjct: 536 LEDGFIKPDALSIVTPDAQV----IGIELHSGRNRIVRRIFEHFGYEVAKLDRTTYAG 589
>gi|376261340|ref|YP_005148060.1| pseudouridine synthase family protein [Clostridium sp. BNL1100]
gi|373945334|gb|AEY66255.1| pseudouridine synthase family protein [Clostridium sp. BNL1100]
Length = 235
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GLI++TNDGDF ++HP ++ K Y A I G K + G
Sbjct: 97 RLYPVGRLDYDTSGLILLTNDGDFTYRLTHPKHEINKVYEAVISGFPEKDEIKRFESGLK 156
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
IE +P E L +RI +HEG+N +VR++ + G K+ +LKR++IG
Sbjct: 157 IEDYQTSP--AEFLVLGKQGINTLVRITIHEGKNRQVRKMCEAIGHKVLTLKRIQIG 211
>gi|15895126|ref|NP_348475.1| pseudouridylate synthase [Clostridium acetobutylicum ATCC 824]
gi|337737068|ref|YP_004636515.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
gi|384458576|ref|YP_005670996.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|15024828|gb|AAK79815.1|AE007694_1 Predicted pseudouridylate synthase [Clostridium acetobutylicum ATCC
824]
gi|325509265|gb|ADZ20901.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|336292075|gb|AEI33209.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
Length = 236
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F VGRLD TTGL+IVTNDG+ + HP + K Y+AT+ G +HL A+ +G
Sbjct: 94 KERVFPVGRLDFNTTGLLIVTNDGEIFNRIMHPRQNVNKCYLATVKGKPQFKHLDALRKG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I G + T + E+ D ++IV+HEG+ +VR + G + LKR+ IG
Sbjct: 154 IDI-GGYITKE-AEVSVVSFDGKNSILKIVIHEGKKRQVRRMCAAVGFPVEELKRISIGN 211
Query: 140 FRL 142
+L
Sbjct: 212 IKL 214
>gi|297170719|gb|ADI21742.1| 16S rRNA uridine-516 pseudouridylate synthase and related
pseudouridylate synthases [uncultured actinobacterium
HF0130_15N16]
Length = 239
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD + GLII+TNDG+ ++HPS + KEY+ ++G ++ L + EG
Sbjct: 99 RIFPVGRLDADSEGLIILTNDGELTHRLTHPSFGVSKEYLVHVEGVPSRSSLRLLREGVE 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V + PQ + +RI +HEGRN +VR + G + L R+RIG +
Sbjct: 159 LEDGCTAPANVAM--PQDGV----MRITIHEGRNRQVRRMCAAIGHPVQRLVRVRIGSIK 212
Query: 142 LPS 144
PS
Sbjct: 213 DPS 215
>gi|83647424|ref|YP_435859.1| 16S rRNA uridine-516 pseudouridylate synthase-like protein [Hahella
chejuensis KCTC 2396]
gi|83635467|gb|ABC31434.1| 16S rRNA uridine-516 pseudouridylate synthase and related
pseudouridylate synthases [Hahella chejuensis KCTC 2396]
Length = 323
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLD+ TTGL+I T DG+ A + HPSS++ +EY + G V + +
Sbjct: 99 RLPKLKSGRWVAVGRLDINTTGLLIFTTDGELANRLMHPSSQIDREYAVRVHGEVTEEMV 158
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ +G ++E G D+ E + +V+ EGRN EVR L ++ G+ + L
Sbjct: 159 TRLQDGVLLEDGLAKFSDIKEAGGSGSN---RWFHVVLQEGRNREVRRLWESQGVTVSRL 215
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KR+R G LPS + +G Q D+ ++
Sbjct: 216 KRVRYGYMFLPSRVRLGNWEMAGQKDVNVL 245
>gi|322388650|ref|ZP_08062250.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
infantis ATCC 700779]
gi|419843035|ref|ZP_14366360.1| pseudouridylate synthase [Streptococcus infantis ATCC 700779]
gi|321140570|gb|EFX36075.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
infantis ATCC 700779]
gi|385703244|gb|EIG40369.1| pseudouridylate synthase [Streptococcus infantis ATCC 700779]
Length = 240
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DDY ++ +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDYARA----------KEVFPVGRLDIDTHGLLLLTNDGKLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + ++G ++ C P +EL+ + + +R+ + EG+ H+V+
Sbjct: 134 LAQVKGIMTDTDVETFAKGIPLKDFTCQPAKLELVSIDTEKDQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L DL G L + +L+++
Sbjct: 194 MVAYCGKEVVDLQRLTMGTLTLDEDLKRGEWRRLSKEELEVL 235
>gi|254975638|ref|ZP_05272110.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile QCD-66c26]
gi|255093025|ref|ZP_05322503.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile CIP 107932]
gi|255314767|ref|ZP_05356350.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile QCD-76w55]
gi|255517442|ref|ZP_05385118.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile QCD-97b34]
gi|255650552|ref|ZP_05397454.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile QCD-37x79]
gi|260683650|ref|YP_003214935.1| 23S RNA and tRNA pseudouridine synthase [Clostridium difficile
CD196]
gi|260687310|ref|YP_003218444.1| 23S RNA and tRNA pseudouridine synthase [Clostridium difficile
R20291]
gi|306520500|ref|ZP_07406847.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile QCD-32g58]
gi|384361277|ref|YP_006199129.1| 23S RNA and tRNA pseudouridine synthase [Clostridium difficile BI1]
gi|260209813|emb|CBA63664.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile CD196]
gi|260213327|emb|CBE04906.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile R20291]
Length = 238
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R R++ +GRLD T+GL+I+TNDGD ++HP ++ K Y+A++ G ++ + G
Sbjct: 93 RERVYPIGRLDYETSGLLILTNDGDLTYKLTHPKHEIDKTYVASVKGIISDDEIRQFETG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IE P + + + I +HEGRN +VR++ K + +L+R+ +G
Sbjct: 153 LKIEDYTTAPAKIRVTKENKEKNYSVCEITIHEGRNRQVRKMCKAINHPVLNLRRISVGK 212
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L D +G + L + ++K +
Sbjct: 213 IVL-KDTKVGEYRYLTEDEIKYL 234
>gi|423609998|ref|ZP_17585859.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD107]
gi|401249315|gb|EJR55621.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD107]
Length = 242
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A + G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKVKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P V+++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPAQVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVMKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|374702036|ref|ZP_09708906.1| pseudouridine synthase [Pseudomonas sp. S9]
Length = 387
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V++ +
Sbjct: 103 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYQMDREYAVRVRGEVDEEMIE 162
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 163 RLKAGVMLEDGPAKFTDIKEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 220
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q ++ ++
Sbjct: 221 RVRFGPVFMTSDLTMGRWREMSQREVDIL 249
>gi|94499317|ref|ZP_01305855.1| hypothetical protein RED65_11024 [Bermanella marisrubri]
gi|94428949|gb|EAT13921.1| hypothetical protein RED65_11024 [Oceanobacter sp. RED65]
Length = 290
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSK-LQKEYIATIDGAVNKRH 72
R P L R VGRLD+ T+GL++ T DG+ A + HPS+ + +EY + G V
Sbjct: 90 RLPKLHGERWIAVGRLDINTSGLLLFTTDGELANKLMHPSTNTVDREYAVRVAGEVTDEA 149
Query: 73 LIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ A++EG ++E V+ D + + EGRN EVR L ++ G K+ L
Sbjct: 150 VKAMTEGVLLEDGMAKFTDVQYF--DGDGFNQWYHVCIMEGRNREVRRLWESQGFKVSRL 207
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSD 158
KR+R G LP + G EL Q+D
Sbjct: 208 KRVRYGCVFLPKRVSAGKWTELNQAD 233
>gi|423082765|ref|ZP_17071354.1| pseudouridylate synthase [Clostridium difficile 002-P50-2011]
gi|423086941|ref|ZP_17075331.1| pseudouridylate synthase [Clostridium difficile 050-P50-2011]
gi|357545524|gb|EHJ27495.1| pseudouridylate synthase [Clostridium difficile 050-P50-2011]
gi|357547883|gb|EHJ29758.1| pseudouridylate synthase [Clostridium difficile 002-P50-2011]
Length = 238
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R R++ +GRLD T+GL+I+TNDGD ++HP ++ K Y+A++ G ++ + G
Sbjct: 93 RERVYPIGRLDYETSGLLILTNDGDLTYKLTHPKHEIDKTYVASVKGIISDDEIRKFETG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IE P + + + I +HEGRN +VR++ K + +L+R+ +G
Sbjct: 153 LKIEDYTTAPAKIRVTKENKEKNYSVCEITIHEGRNRQVRKMCKAINHPVLNLRRISVGK 212
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L D +G + L + ++K +
Sbjct: 213 IVL-KDTKVGEYRYLTEDEIKYL 234
>gi|375288567|ref|YP_005123108.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
3/99-5]
gi|379715278|ref|YP_005303615.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
316]
gi|384504575|ref|YP_005681245.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1002]
gi|384508754|ref|YP_005685422.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
I19]
gi|385807447|ref|YP_005843844.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
267]
gi|387136506|ref|YP_005692486.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
42/02-A]
gi|387138579|ref|YP_005694558.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|387140577|ref|YP_005696555.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1/06-A]
gi|389850331|ref|YP_006352566.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
258]
gi|392400516|ref|YP_006437116.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
Cp162]
gi|302330665|gb|ADL20859.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1002]
gi|308276349|gb|ADO26248.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
I19]
gi|348606951|gb|AEP70224.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
42/02-A]
gi|349735057|gb|AEQ06535.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|355392368|gb|AER69033.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1/06-A]
gi|371575856|gb|AEX39459.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
3/99-5]
gi|377653984|gb|AFB72333.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
316]
gi|383804840|gb|AFH51919.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
267]
gi|388247637|gb|AFK16628.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
258]
gi|390531594|gb|AFM07323.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
Cp162]
Length = 286
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HP ++ K Y+AT+ G +KR + + +G
Sbjct: 143 RLFHVGRLDAATEGLLLLTNDGELANRLMHPKYEVTKTYLATVLGEADKRLIKQLRDGIE 202
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ D V+++ + IRI +HEGR H VR ++K AG + L R +I +
Sbjct: 203 LDDGPAKADFVQIVDAHQG--KSLIRIELHEGRKHIVRRMLKTAGFPVERLVRTKIHTIQ 260
Query: 142 L 142
L
Sbjct: 261 L 261
>gi|358465396|ref|ZP_09175345.1| putative 16S pseudouridylate 516 synthase [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357065694|gb|EHI75872.1| putative 16S pseudouridylate 516 synthase [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 240
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 77/140 (55%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ T GL+++TNDG A A+ P + K Y+A + G + + + S+G +
Sbjct: 96 VFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTYLAQVKGIMTQEDVETFSKGIPL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +E+L ++R+ + EG+ H+V+ +V G ++ L+RL +G L
Sbjct: 156 KDFTCQPAKLEILSVDSGKDESKVRVTIAEGKFHQVKRMVAYCGKEVVDLQRLTMGTLVL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
+L G + Q +L+L+
Sbjct: 216 DENLKRGEWRRVSQEELELL 235
>gi|342163091|ref|YP_004767730.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pseudopneumoniae IS7493]
gi|341932973|gb|AEL09870.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pseudopneumoniae IS7493]
Length = 240
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDIARSKE----------VFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + ++G ++ C P +E+L + + +IR+ + EG+ H+V+
Sbjct: 134 LAQVKGIMTQEDVEIFAKGIPLKDFTCQPARLEILSTDAEKNQSQIRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + DL+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEDLEIL 235
>gi|417793621|ref|ZP_12440893.1| 16S pseudouridylate 516 synthase [Streptococcus oralis SK255]
gi|334272276|gb|EGL90642.1| 16S pseudouridylate 516 synthase [Streptococcus oralis SK255]
Length = 240
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 78/140 (55%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ T GL+++TNDG A A+ P + K Y+A + G ++ + ++G +
Sbjct: 96 VFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTYLAQVKGITSQEDVETFAKGIPL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +E+L D ++R+ + EG+ H+V+ +V G ++ L+RL +G L
Sbjct: 156 KDFTCQPAKLEILSVDSDKDESQVRVTIAEGKFHQVKRMVAYCGKEVVDLQRLTMGTLAL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
+L G L + +L+++
Sbjct: 216 DENLERGEWRHLTKEELEVL 235
>gi|328948658|ref|YP_004365995.1| RNA-binding S4 domain-containing protein [Treponema succinifaciens
DSM 2489]
gi|328448982|gb|AEB14698.1| RNA-binding S4 domain protein [Treponema succinifaciens DSM 2489]
Length = 247
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 11/143 (7%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA--ISEG 79
RL+ VGRLD+ ++GLII TNDGDFA +SHPS++L+KEYI +D ++ +A +G
Sbjct: 108 RLYNVGRLDMFSSGLIIFTNDGDFAAKLSHPSAELEKEYI--VDTSLPMPRFLADDFMDG 165
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G V ++ R+RIV+ EG+N E+R + + + + SL R+RIG
Sbjct: 166 IRIDG------VFYRCKDARELNSHRMRIVLVEGKNREIRRVFEKYEVGIKSLMRIRIGC 219
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+ +L G +L Q ++K +
Sbjct: 220 VGV-GELQFGQFRDLTQDEVKAL 241
>gi|365924929|ref|ZP_09447692.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
mali KCTC 3596 = DSM 20444]
gi|420266385|ref|ZP_14768859.1| Pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394425533|gb|EJE98485.1| Pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 249
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY K+ ++R ++ VGRLD T+GL+++TNDGD A + HP +K+ K Y+A +
Sbjct: 99 DYFKNIEQR--------IYPVGRLDYDTSGLLLMTNDGDLANKLMHPKNKVDKTYVAKVS 150
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G + G +IEG P LL + + +V+HEGR H+V+++
Sbjct: 151 GIPENEDFKKLRLGVMIEGKKTAPAKARLLSADQKKKKALVSLVIHEGRYHQVKKMFDAI 210
Query: 126 GLKLYSLKRLRIGGFRL 142
G + LKR G L
Sbjct: 211 GHPVEKLKRETYGFLTL 227
>gi|313113861|ref|ZP_07799427.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310623827|gb|EFQ07216.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 276
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD + GL+++TNDG FAQAV+HPS + K Y T+ ++ ++ +S G V
Sbjct: 99 RLYPVGRLDKDSEGLLLMTNDGAFAQAVTHPSGGISKLYRVTVQPRADESQILKLSSGVV 158
Query: 82 I-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+ +GT P + ++ +P R + + + EG+N E+R + + GL++ LKR G
Sbjct: 159 LDDGTKTMPCAINVVTDEPG--RTVMEMTLKEGKNREIRRMCETVGLEVVRLKRNAEGVV 216
Query: 141 RLPSDLGIGMHVELKQSDL 159
+L L G + EL ++++
Sbjct: 217 KL-GMLKPGTYRELTKAEI 234
>gi|89099078|ref|ZP_01171957.1| ribosomal large subunit pseudouridine synthaseB (pseudouridylate
synthase) (uracil hydrolyase) [Bacillus sp. NRRL
B-14911]
gi|89086208|gb|EAR65330.1| ribosomal large subunit pseudouridine synthaseB (pseudouridylate
synthase) (uracil hydrolyase) [Bacillus sp. NRRL
B-14911]
Length = 224
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+FA + HP ++++K Y+A I G + L ++ G
Sbjct: 70 KERVYPVGRLDFDTSGLLLMTNDGEFANLLMHPKNEVEKVYVAKIKGIPAREKLKSLERG 129
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E P V++L + +V+HEGRN +VR +++ G + LKR R G
Sbjct: 130 VRLEDGKTAPARVKVLSIDKQKNTAIVELVIHEGRNRQVRRMLEAIGHPVMKLKRERYGF 189
Query: 140 FRLPSDLGIGMHVELKQSDLK 160
L L G EL ++K
Sbjct: 190 LTLQG-LSAGDARELTAHEVK 209
>gi|126699667|ref|YP_001088564.1| ribosomal large subunit pseudouridine synthase B [Clostridium
difficile 630]
gi|255101182|ref|ZP_05330159.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile QCD-63q42]
gi|255307056|ref|ZP_05351227.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile ATCC 43255]
gi|423089141|ref|ZP_17077503.1| pseudouridylate synthase [Clostridium difficile 70-100-2010]
gi|115251104|emb|CAJ68935.1| Ribosomal large subunit pseudouridine synthase B [Clostridium
difficile 630]
gi|357558612|gb|EHJ40101.1| pseudouridylate synthase [Clostridium difficile 70-100-2010]
Length = 238
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R R++ +GRLD T+GL+I+TNDGD ++HP ++ K Y+A++ G ++ + G
Sbjct: 93 RERVYPIGRLDYETSGLLILTNDGDLTYKLTHPKHEIDKTYVASVKGIISDDEIRQFETG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IE P + + + I +HEGRN +VR++ K + +L+R+ +G
Sbjct: 153 LKIEDYTTAPAKIRVTKENKEKNYSVCEITIHEGRNRQVRKMCKAINHPVLNLRRISVGK 212
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L D +G + L + ++K +
Sbjct: 213 IVL-KDTKVGEYRYLTEDEIKYL 234
>gi|418010823|ref|ZP_12650594.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei Lc-10]
gi|410553402|gb|EKQ27405.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
casei Lc-10]
Length = 247
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+++TNDGD A + HP L+K+Y+A + G N+ L + G
Sbjct: 98 RLYPVGRLDYDTSGLLVMTNDGDLANHLMHPRYALEKKYVAKVQGVPNRPALAPLKTGVE 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P V+++ + + +H+G NH+V+++ K G + L R G
Sbjct: 158 VDGKMTAPAKVDIISTDKAKKTAIVSLTIHQGMNHQVKKMFKAVGFPVLKLFREAYGNLT 217
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L G H +K +L+ +
Sbjct: 218 LVG-LQPGEHRPIKPQELQAL 237
>gi|421205755|ref|ZP_15662821.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2090008]
gi|421210294|ref|ZP_15667286.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070035]
gi|421228964|ref|ZP_15685642.1| RNA pseudouridylate synthase [Streptococcus pneumoniae 2061376]
gi|421231112|ref|ZP_15687762.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2080076]
gi|421291092|ref|ZP_15741836.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|421310988|ref|ZP_15761601.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
gi|395575993|gb|EJG36553.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070035]
gi|395577782|gb|EJG38316.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2090008]
gi|395597309|gb|EJG57516.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2080076]
gi|395598631|gb|EJG58832.1| RNA pseudouridylate synthase [Streptococcus pneumoniae 2061376]
gi|395896892|gb|EJH07857.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|395913948|gb|EJH24797.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
Length = 240
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARSKE----------VFPVGRLDINTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCKPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|357235987|ref|ZP_09123330.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
criceti HS-6]
gi|356883969|gb|EHI74169.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
criceti HS-6]
Length = 242
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ ++F VGRLD+ TTGL+++TN+G A A+ P + K Y A + G + + A S+G
Sbjct: 93 QKQVFPVGRLDIDTTGLLLLTNNGPLAHAMLSPKRHVFKVYQAKVAGLMTAEDVEAFSQG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++ C P +++L + I + EG+ H+++ +V + G K+ LKRL +G
Sbjct: 153 IELKDLDCQPAELQILETDQTSQTSLVHIRIAEGKFHQIKRMVASRGKKVVELKRLSMGP 212
Query: 140 FRLPSDLGIGMHVELKQSDLK-LMGWK 165
LP DL G + L DL L G++
Sbjct: 213 LTLPKDLPPGHYQRLTGQDLADLSGFQ 239
>gi|217963560|ref|YP_002349238.1| RNA pseudouridine synthase family protein [Listeria monocytogenes
HCC23]
gi|290893629|ref|ZP_06556611.1| rsuA protein [Listeria monocytogenes FSL J2-071]
gi|386009054|ref|YP_005927332.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes L99]
gi|386027667|ref|YP_005948443.1| RNA pseudouridine synthase family protein [Listeria monocytogenes
M7]
gi|404408720|ref|YP_006691435.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2376]
gi|217332830|gb|ACK38624.1| RNA pseudouridine synthase family protein [Listeria monocytogenes
HCC23]
gi|290556831|gb|EFD90363.1| rsuA protein [Listeria monocytogenes FSL J2-071]
gi|307571864|emb|CAR85043.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes L99]
gi|336024248|gb|AEH93385.1| RNA pseudouridine synthase family protein [Listeria monocytogenes
M7]
gi|404242869|emb|CBY64269.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2376]
Length = 233
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A ++G T+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVVAEDVTAFADGITLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I++ + EG+ H+V+ + G + LKR+ +G +L
Sbjct: 157 DGYTCKPARLEIINPN------EIKVTIQEGKFHQVKRMFAARGKTVSYLKRISMGNLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DESLELGEYRPLTETELAILQNK 233
>gi|366053185|ref|ZP_09450907.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
suebicus KCTC 3549]
Length = 237
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTGL+++TNDGD A ++HP ++ K Y+A + G V L + G +
Sbjct: 95 RIYPVGRLDYDTTGLLLLTNDGDLANKLTHPKYEVDKTYVAKVQGIVTNDDLKQLRLGVM 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P ++ +++ +HEGRNH+V++++K G ++ L R G
Sbjct: 155 VDGRKTKPAKTKITNVDQKKKTTIVQVTIHEGRNHQVKKMLKAVGHEVIKLHRESYGFLT 214
Query: 142 LP 143
L
Sbjct: 215 LA 216
>gi|452746115|ref|ZP_21945942.1| pseudouridine synthase [Pseudomonas stutzeri NF13]
gi|452010019|gb|EME02225.1| pseudouridine synthase [Pseudomonas stutzeri NF13]
Length = 377
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 105 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 164
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 165 RLKAGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 222
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q+++ ++
Sbjct: 223 RVRFGPVFMTSDLPMGRWREMSQTEVDIL 251
>gi|421619212|ref|ZP_16060174.1| pseudouridine synthase [Pseudomonas stutzeri KOS6]
gi|409778763|gb|EKN58447.1| pseudouridine synthase [Pseudomonas stutzeri KOS6]
Length = 379
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 105 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 164
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 165 RLKTGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 222
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q+++ ++
Sbjct: 223 RVRFGPVFMTSDLPMGRWREMSQTEVDIL 251
>gi|392940082|ref|ZP_10305726.1| LOW QUALITY PROTEIN: pseudouridine synthase family protein
[Thermoanaerobacter siderophilus SR4]
gi|392291832|gb|EIW00276.1| LOW QUALITY PROTEIN: pseudouridine synthase family protein
[Thermoanaerobacter siderophilus SR4]
Length = 240
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
RNP F VGRLD T GL+++TNDGD A + P + K+Y A I G VN+ +
Sbjct: 97 RNP-------FPVGRLDKDTEGLLLITNDGDLAHQLLSPKKNVIKKYYAEILGFVNESDI 149
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
A +EG ++E G P +E+L D+ ++ + + EG+ H+++ + ++ G K+ L
Sbjct: 150 KAFNEGIILEDGYKTLPANLEIL-FSSDV--SKVYVYIREGKYHQIKRMFESVGKKVIYL 206
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KRL +G L +L G EL + +L +
Sbjct: 207 KRLAMGSLTLDENLKPGEWRELSEEELSFL 236
>gi|419481327|ref|ZP_14021123.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40563]
gi|379582734|gb|EHZ47612.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40563]
Length = 240
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Query: 17 GLPRPR-LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
L R + +F VGRLD+ T GL+++TNDG A + P + K Y+A + G + + +
Sbjct: 89 ALARSKEVFPVGRLDINTHGLLLLTNDGQLAHVLLSPKRHVDKTYLAQVKGIMTQEDVET 148
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+EG ++ C P ++EL+ + + +IR+ + EG+ H+++ +V G ++ L+RL
Sbjct: 149 FAEGIPLKDFTCKPAILELVSIDTEKNQSQIRVTIAEGKFHQIKRMVGYCGKEVVDLQRL 208
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLKLM 162
+G L +L G L + +L+++
Sbjct: 209 TMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|386020954|ref|YP_005938978.1| pseudouridine synthase [Pseudomonas stutzeri DSM 4166]
gi|327480926|gb|AEA84236.1| pseudouridine synthase [Pseudomonas stutzeri DSM 4166]
Length = 375
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 105 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 164
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 165 RLKTGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 222
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q+++ ++
Sbjct: 223 RVRFGPVFMTSDLPMGRWREMSQAEVDIL 251
>gi|227890935|ref|ZP_04008740.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
salivarius ATCC 11741]
gi|417810189|ref|ZP_12456868.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
salivarius GJ-24]
gi|227867344|gb|EEJ74765.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
salivarius ATCC 11741]
gi|335348985|gb|EGM50485.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
salivarius GJ-24]
Length = 242
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+I+TNDGDFA + HP K+ K Y+A ++G + + + G V
Sbjct: 96 RLYPVGRLDYDTSGLLILTNDGDFANQMMHPRYKVDKTYVAKVEGLITPDSIKKLRNGVV 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G + +++ + + +HEGR H+V+++ G K+ L R G
Sbjct: 156 IDGKPTSRARAKIISRDAKKNTSIVSLTIHEGRYHQVKKMFDAVGHKVQKLSRTTYGTLT 215
Query: 142 LPSDLGIGMHVELKQSDLK 160
L L G + EL ++++
Sbjct: 216 LDG-LTSGEYRELSHNEVR 233
>gi|15900214|ref|NP_344818.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae TIGR4]
gi|111656756|ref|ZP_01407636.1| hypothetical protein SpneT_02001953 [Streptococcus pneumoniae
TIGR4]
gi|148988021|ref|ZP_01819484.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP6-BS73]
gi|149011151|ref|ZP_01832456.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP19-BS75]
gi|168493975|ref|ZP_02718118.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC3059-06]
gi|225856037|ref|YP_002737548.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae P1031]
gi|225858129|ref|YP_002739639.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae 70585]
gi|225860315|ref|YP_002741824.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae Taiwan19F-14]
gi|298229569|ref|ZP_06963250.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254034|ref|ZP_06977620.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502097|ref|YP_003724037.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|387787488|ref|YP_006252556.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae ST556]
gi|418075416|ref|ZP_12712658.1| hypothetical protein SPAR98_0335 [Streptococcus pneumoniae GA47502]
gi|418077824|ref|ZP_12715048.1| hypothetical protein SPAR123_0265 [Streptococcus pneumoniae
4027-06]
gi|418079982|ref|ZP_12717198.1| hypothetical protein SPAR121_0276 [Streptococcus pneumoniae
6735-05]
gi|418084387|ref|ZP_12721575.1| hypothetical protein SPAR90_0291 [Streptococcus pneumoniae GA47281]
gi|418088690|ref|ZP_12725851.1| hypothetical protein SPAR77_0272 [Streptococcus pneumoniae GA43265]
gi|418093147|ref|ZP_12730278.1| hypothetical protein SPAR110_0269 [Streptococcus pneumoniae
GA49138]
gi|418097697|ref|ZP_12734799.1| hypothetical protein SPAR122_0276 [Streptococcus pneumoniae
6901-05]
gi|418099880|ref|ZP_12736969.1| hypothetical protein SPAR128_0295 [Streptococcus pneumoniae
7286-06]
gi|418113877|ref|ZP_12750870.1| hypothetical protein SPAR125_0277 [Streptococcus pneumoniae
5787-06]
gi|418116044|ref|ZP_12753021.1| hypothetical protein SPAR124_0253 [Streptococcus pneumoniae
6963-05]
gi|418118236|ref|ZP_12755197.1| hypothetical protein SPAR54_0274 [Streptococcus pneumoniae GA18523]
gi|418129461|ref|ZP_12766345.1| hypothetical protein SPAR14_0248 [Streptococcus pneumoniae GA07643]
gi|418134008|ref|ZP_12770868.1| hypothetical protein SPAR23_0273 [Streptococcus pneumoniae GA11426]
gi|418140910|ref|ZP_12777724.1| hypothetical protein SPAR30_0289 [Streptococcus pneumoniae GA13455]
gi|418149869|ref|ZP_12786625.1| hypothetical protein SPAR37_0277 [Streptococcus pneumoniae GA14798]
gi|418152047|ref|ZP_12788787.1| hypothetical protein SPAR38_0283 [Streptococcus pneumoniae GA16121]
gi|418163641|ref|ZP_12800317.1| hypothetical protein SPAR45_0276 [Streptococcus pneumoniae GA17371]
gi|418170518|ref|ZP_12807148.1| hypothetical protein SPAR58_0299 [Streptococcus pneumoniae GA19451]
gi|418186300|ref|ZP_12822831.1| hypothetical protein SPAR92_0268 [Streptococcus pneumoniae GA47360]
gi|418197215|ref|ZP_12833681.1| hypothetical protein SPAR106_0302 [Streptococcus pneumoniae
GA47778]
gi|418222600|ref|ZP_12849246.1| hypothetical protein SPAR127_0296 [Streptococcus pneumoniae
5185-06]
gi|418229028|ref|ZP_12855638.1| hypothetical protein SPAR136_0276 [Streptococcus pneumoniae
EU-NP01]
gi|419424360|ref|ZP_13964563.1| pseudouridine synthase family protein [Streptococcus pneumoniae
7533-05]
gi|419426493|ref|ZP_13966677.1| pseudouridine synthase family protein [Streptococcus pneumoniae
5652-06]
gi|419428566|ref|ZP_13968737.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA11856]
gi|419435206|ref|ZP_13975302.1| pseudouridine synthase family protein [Streptococcus pneumoniae
8190-05]
gi|419439526|ref|ZP_13979583.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40410]
gi|419443944|ref|ZP_13983959.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA19923]
gi|419446054|ref|ZP_13986060.1| pseudouridine synthase family protein [Streptococcus pneumoniae
7879-04]
gi|419448210|ref|ZP_13988208.1| pseudouridine synthase family protein [Streptococcus pneumoniae
4075-00]
gi|419450306|ref|ZP_13990295.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP02]
gi|419476947|ref|ZP_14016773.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA18068]
gi|419494625|ref|ZP_14034345.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47461]
gi|419501056|ref|ZP_14040743.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47628]
gi|419518119|ref|ZP_14057729.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA08825]
gi|419527312|ref|ZP_14066859.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17719]
gi|421226457|ref|ZP_15683171.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2072047]
gi|421235479|ref|ZP_15692080.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2071004]
gi|421242115|ref|ZP_15698643.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2081074]
gi|421246531|ref|ZP_15703021.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2082170]
gi|421248646|ref|ZP_15705109.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2082239]
gi|421267511|ref|ZP_15718386.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR95]
gi|421269718|ref|ZP_15720575.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR48]
gi|421286820|ref|ZP_15737587.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
gi|421288961|ref|ZP_15739713.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|421297747|ref|ZP_15748441.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
gi|421302144|ref|ZP_15752809.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|421304277|ref|ZP_15754935.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
gi|421306485|ref|ZP_15757132.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
gi|444410242|ref|ZP_21206787.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0076]
gi|444413713|ref|ZP_21210028.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0153]
gi|444414005|ref|ZP_21210311.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0199]
gi|444421693|ref|ZP_21217363.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0446]
gi|14971752|gb|AAK74458.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae TIGR4]
gi|147764787|gb|EDK71717.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP19-BS75]
gi|147926485|gb|EDK77558.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP6-BS73]
gi|183576148|gb|EDT96676.1| putative ribosomal small subunit pseudouridine synthase A
[Streptococcus pneumoniae CDC3059-06]
gi|225721053|gb|ACO16907.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae 70585]
gi|225725053|gb|ACO20905.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae P1031]
gi|225728111|gb|ACO23962.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae Taiwan19F-14]
gi|298237692|gb|ADI68823.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|353748846|gb|EHD29497.1| hypothetical protein SPAR123_0265 [Streptococcus pneumoniae
4027-06]
gi|353751430|gb|EHD32062.1| hypothetical protein SPAR98_0335 [Streptococcus pneumoniae GA47502]
gi|353754301|gb|EHD34914.1| hypothetical protein SPAR121_0276 [Streptococcus pneumoniae
6735-05]
gi|353760690|gb|EHD41266.1| hypothetical protein SPAR90_0291 [Streptococcus pneumoniae GA47281]
gi|353764431|gb|EHD44980.1| hypothetical protein SPAR77_0272 [Streptococcus pneumoniae GA43265]
gi|353767500|gb|EHD48034.1| hypothetical protein SPAR110_0269 [Streptococcus pneumoniae
GA49138]
gi|353771853|gb|EHD52360.1| hypothetical protein SPAR122_0276 [Streptococcus pneumoniae
6901-05]
gi|353773879|gb|EHD54374.1| hypothetical protein SPAR128_0295 [Streptococcus pneumoniae
7286-06]
gi|353788541|gb|EHD68938.1| hypothetical protein SPAR125_0277 [Streptococcus pneumoniae
5787-06]
gi|353791682|gb|EHD72056.1| hypothetical protein SPAR124_0253 [Streptococcus pneumoniae
6963-05]
gi|353793085|gb|EHD73455.1| hypothetical protein SPAR54_0274 [Streptococcus pneumoniae GA18523]
gi|353802753|gb|EHD83045.1| hypothetical protein SPAR14_0248 [Streptococcus pneumoniae GA07643]
gi|353807397|gb|EHD87668.1| hypothetical protein SPAR30_0289 [Streptococcus pneumoniae GA13455]
gi|353818011|gb|EHD98211.1| hypothetical protein SPAR37_0277 [Streptococcus pneumoniae GA14798]
gi|353818692|gb|EHD98890.1| hypothetical protein SPAR38_0283 [Streptococcus pneumoniae GA16121]
gi|353833067|gb|EHE13179.1| hypothetical protein SPAR45_0276 [Streptococcus pneumoniae GA17371]
gi|353838812|gb|EHE18889.1| hypothetical protein SPAR58_0299 [Streptococcus pneumoniae GA19451]
gi|353854122|gb|EHE34102.1| hypothetical protein SPAR92_0268 [Streptococcus pneumoniae GA47360]
gi|353865752|gb|EHE45659.1| hypothetical protein SPAR106_0302 [Streptococcus pneumoniae
GA47778]
gi|353881688|gb|EHE61501.1| hypothetical protein SPAR127_0296 [Streptococcus pneumoniae
5185-06]
gi|353890865|gb|EHE70624.1| hypothetical protein SPAR136_0276 [Streptococcus pneumoniae
EU-NP01]
gi|353903995|gb|EHE79509.1| hypothetical protein SPAR23_0273 [Streptococcus pneumoniae GA11426]
gi|379137230|gb|AFC94021.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae ST556]
gi|379553817|gb|EHZ18900.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA11856]
gi|379567746|gb|EHZ32729.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA18068]
gi|379568475|gb|EHZ33455.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17719]
gi|379571637|gb|EHZ36594.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA19923]
gi|379582011|gb|EHZ46894.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40410]
gi|379596989|gb|EHZ61792.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47461]
gi|379603301|gb|EHZ68070.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47628]
gi|379615512|gb|EHZ80218.1| pseudouridine synthase family protein [Streptococcus pneumoniae
7879-04]
gi|379616875|gb|EHZ81568.1| pseudouridine synthase family protein [Streptococcus pneumoniae
8190-05]
gi|379619453|gb|EHZ84125.1| pseudouridine synthase family protein [Streptococcus pneumoniae
5652-06]
gi|379621164|gb|EHZ85813.1| pseudouridine synthase family protein [Streptococcus pneumoniae
7533-05]
gi|379625022|gb|EHZ89650.1| pseudouridine synthase family protein [Streptococcus pneumoniae
4075-00]
gi|379625451|gb|EHZ90078.1| pseudouridine synthase family protein [Streptococcus pneumoniae
EU-NP02]
gi|379642332|gb|EIA06864.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA08825]
gi|395597527|gb|EJG57733.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2072047]
gi|395604398|gb|EJG64530.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2071004]
gi|395611687|gb|EJG71751.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2081074]
gi|395615275|gb|EJG75291.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2082239]
gi|395616141|gb|EJG76154.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2082170]
gi|395870370|gb|EJG81483.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR48]
gi|395872600|gb|EJG83698.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR95]
gi|395890221|gb|EJH01227.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|395891079|gb|EJH02082.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
gi|395902958|gb|EJH13890.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|395904412|gb|EJH15328.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
gi|395906668|gb|EJH17566.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
gi|395910195|gb|EJH21069.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
gi|444272884|gb|ELU78571.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0153]
gi|444278000|gb|ELU83485.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0076]
gi|444283307|gb|ELU88505.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0199]
gi|444288902|gb|ELU93790.1| pseudouridylate synthase [Streptococcus pneumoniae PNI0446]
Length = 240
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|452976722|gb|EME76537.1| ribosomal large subunit pseudouridine synthase RluB [Bacillus
sonorensis L12]
Length = 244
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD T+GL+++TNDGDFA + HP ++ K Y+A + G K +L + G
Sbjct: 94 RIYPIGRLDYETSGLLLLTNDGDFANKLMHPKYEIDKTYVAKLKGIPAKENLKKLERGIR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+E P V+LL ++I +HEGRN +VR + + G ++ LKR
Sbjct: 154 LEEGKTAPAKVKLLSLDKKKQTSIVQITIHEGRNRQVRRMFEAIGHQVLKLKR 206
>gi|339635164|ref|YP_004726805.1| pseudouridylate synthase [Weissella koreensis KACC 15510]
gi|338854960|gb|AEJ24126.1| pseudouridylate synthase [Weissella koreensis KACC 15510]
Length = 248
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTG +++TNDG+ A + HP K+ K Y+A + G L A+ G
Sbjct: 94 KERVYPVGRLDYDTTGALLLTNDGELANQLMHPRYKIDKVYVAKVKGVPTNDELKALRLG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
V++G ++L I++ +HEGR H+V+E++K G + L R R G
Sbjct: 154 VVVDGKKTAEARADILRTDRKKGTSTIQLTIHEGRYHQVKEMLKTVGHPVIKLHRERYGM 213
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+ +DL G + L+ +++ +
Sbjct: 214 LEV-TDLASGEYRALRHDEVQYL 235
>gi|339494283|ref|YP_004714576.1| pseudouridine synthase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338801655|gb|AEJ05487.1| pseudouridine synthase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 375
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 105 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 164
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 165 RLKTGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 222
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q+++ ++
Sbjct: 223 RVRFGPVFMTSDLPMGRWREMSQAEVDIL 251
>gi|422413840|ref|ZP_16490799.1| RNA pseudouridine synthase family protein [Listeria innocua FSL
S4-378]
gi|313617518|gb|EFR89863.1| RNA pseudouridine synthase family protein [Listeria innocua FSL
S4-378]
Length = 233
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A S G T+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGEVTAEDVEAFSAGVTLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I++ + EG+ H+V+ + G + LKR+ +G +L
Sbjct: 157 DGYTCKPAHLEIITPN------EIKVTIQEGKFHQVKRMFAARGKTVSYLKRISMGNLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DESLELGEYRPLTENELLILQNK 233
>gi|442610605|ref|ZP_21025316.1| Similar to ribosomal large subunit pseudouridine synthase F, group
RluF2 [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441747822|emb|CCQ11378.1| Similar to ribosomal large subunit pseudouridine synthase F, group
RluF2 [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 225
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD + GL+++TNDG+ ++HP S ++KEY T+D A ++R +++G
Sbjct: 91 RLYPIGRLDKDSRGLLLITNDGELCHRLNHPDSHVEKEYHVTLDRAFDERFCQKMAKGIP 150
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P E+ P + + RIV+ +G N ++R++ K G ++ L R+RIG F+
Sbjct: 151 VDGQITLP--CEVTP----LSTRQFRIVLKQGLNRQIRKMAKYCGYRVIDLMRVRIGAFQ 204
Query: 142 L 142
L
Sbjct: 205 L 205
>gi|420161159|ref|ZP_14667930.1| pseudouridylate synthase [Weissella koreensis KCTC 3621]
gi|394745909|gb|EJF34727.1| pseudouridylate synthase [Weissella koreensis KCTC 3621]
Length = 248
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTG +++TNDG+ A + HP K+ K Y+A + G L A+ G
Sbjct: 94 KERVYPVGRLDYDTTGALLLTNDGELANQLMHPRYKIDKVYVAKVKGVPTNDELKALRLG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
V++G ++L I++ +HEGR H+V+E++K G + L R R G
Sbjct: 154 VVVDGKKTAEARADILRTDRKKGTSTIQLTIHEGRYHQVKEMLKTVGHPVIKLHRERYGM 213
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+ +DL G + L+ +++ +
Sbjct: 214 LEV-TDLASGEYRALRHDEVQYL 235
>gi|169832770|ref|YP_001693807.1| RNA pseudouridine synthase [Streptococcus pneumoniae Hungary19A-6]
gi|418192977|ref|ZP_12829473.1| hypothetical protein SPAR119_0261 [Streptococcus pneumoniae
GA47439]
gi|168995272|gb|ACA35884.1| RNA pseudouridine synthase family protein [Streptococcus pneumoniae
Hungary19A-6]
gi|353861124|gb|EHE41063.1| hypothetical protein SPAR119_0261 [Streptococcus pneumoniae
GA47439]
Length = 240
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|146282670|ref|YP_001172823.1| pseudouridine synthase [Pseudomonas stutzeri A1501]
gi|145570875|gb|ABP79981.1| pseudouridine synthase [Pseudomonas stutzeri A1501]
Length = 297
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 27 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 86
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 87 RLKTGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 144
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q+++ ++
Sbjct: 145 RVRFGPVFMTSDLPMGRWREMSQAEVDIL 173
>gi|307244534|ref|ZP_07526639.1| pseudouridylate synthase [Peptostreptococcus stomatis DSM 17678]
gi|306492061|gb|EFM64109.1| pseudouridylate synthase [Peptostreptococcus stomatis DSM 17678]
Length = 244
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG + V P + K Y A ID V R + A S+G I
Sbjct: 97 FPVGRLDKDTEGLLVITNDGQLSHRVLSPKKHVPKIYYAEIDHEVLARDIEAFSKGVYIG 156
Query: 84 GTHCTP----DVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T +V++ + I + + EG+ H+V+ + + G + LKR+++GG
Sbjct: 157 DDYTTKPAKLEVIKSFEAEDGAIHSEIYVTISEGKFHQVKRMFEAVGKSVLYLKRIQMGG 216
Query: 140 FRLPSDLGIGMHVELKQSDLKLMGWK 165
+L LG+G + EL + ++ L+ K
Sbjct: 217 LKLDESLGLGEYRELTEEEIDLLEKK 242
>gi|237785455|ref|YP_002906160.1| putative pseudouridylate synthase [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758367|gb|ACR17617.1| putative pseudouridylate synthase [Corynebacterium kroppenstedtii
DSM 44385]
Length = 278
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HP ++K Y+AT+ G V+K+ L +++G
Sbjct: 135 RLFHVGRLDAATQGLLLLTNDGELANRLIHPKYGIKKTYLATVLGEVDKKDLRRLTQGIE 194
Query: 82 IEGTHCTPDVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++ D +++ D+ + R +++V+HEGR H VR ++K AG + L R +I
Sbjct: 195 LDDGTARADDADII----DVWQGRSLVKVVLHEGRKHIVRRMLKAAGFPVQELVRTKIHT 250
Query: 140 FRL 142
+L
Sbjct: 251 VQL 253
>gi|429730386|ref|ZP_19265033.1| pseudouridylate synthase [Corynebacterium durum F0235]
gi|429147542|gb|EKX90566.1| pseudouridylate synthase [Corynebacterium durum F0235]
Length = 281
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A ++HP+ ++ K Y+AT+ G N+R + + G
Sbjct: 138 RLFHVGRLDAATEGLLLLTNDGELANRLTHPTYEIAKTYLATVIGEANRRLIRTLKNGIE 197
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ D V+++ + IR+ +HEGR H VR ++K G + L R RI +
Sbjct: 198 LDDGPARADYVQIVDVHDG--KSLIRVELHEGRKHIVRRMLKEVGYPVERLVRTRIHTVQ 255
Query: 142 L 142
L
Sbjct: 256 L 256
>gi|418961466|ref|ZP_13513352.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
salivarius SMXD51]
gi|380343998|gb|EIA32345.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
salivarius SMXD51]
Length = 242
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T+GL+I+TNDGDFA + HP K+ K Y+A ++G + + + G V
Sbjct: 96 RLYPVGRLDYDTSGLLILTNDGDFANQMMHPRYKVDKTYVAKVEGLITPDSIKKLRNGVV 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G + +++ + + +HEGR H+V+++ G K+ L R G
Sbjct: 156 IDGKPTSRARAKIISRDAKKNTSIVSLTIHEGRYHQVKKMFDAVGHKVQKLSRTTYGTLT 215
Query: 142 LPSDLGIGMHVELKQSDLK 160
L L G + EL ++++
Sbjct: 216 LDG-LTSGEYRELSHNEVR 233
>gi|389855660|ref|YP_006357904.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris NZ9000]
gi|300072082|gb|ADJ61482.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris NZ9000]
Length = 242
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+I+TNDG ++ P ++KEY A IDG V + +EG
Sbjct: 93 RKDIFPVGRLDKNTEGLLILTNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFAEG 152
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
T+ G P + + + IR+++HEG+ H+V+ + + + + LKR
Sbjct: 153 LTLKNGEKARPGELFVEKTYKGDSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKR 212
Query: 135 LRIGGFRLPSDLGIGMH 151
+R+G L SDL +G +
Sbjct: 213 IRMGNLALDSDLALGAY 229
>gi|187918008|ref|YP_001883571.1| ribosomal large subunit pseudouridine synthase B [Borrelia hermsii
DAH]
gi|119860856|gb|AAX16651.1| ribosomal large subunit pseudouridine synthase B [Borrelia hermsii
DAH]
Length = 253
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 6/127 (4%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L + RLF++GRLD ++GL++ TNDG FA ++ HP S+++KEYI VN+ LI
Sbjct: 102 LFKERLFSIGRLDFKSSGLLLFTNDGQFANSIVHPRSEVEKEYIVESKKDVNEDLLINFK 161
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
G IE E+L +++V+ EG+N E+R++ + + L + R+RI
Sbjct: 162 HGIKIEREIFKLKSYEMLGNNS------VKLVLTEGKNREIRKVFLSKNIFLKKVHRIRI 215
Query: 138 GGFRLPS 144
G +L +
Sbjct: 216 GNIKLDN 222
>gi|423392129|ref|ZP_17369355.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG1X1-3]
gi|423420479|ref|ZP_17397568.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG3X2-1]
gi|401102388|gb|EJQ10375.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG3X2-1]
gi|401637962|gb|EJS55715.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG1X1-3]
Length = 242
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
++E P V++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VMLEDGKTAPANVKITSWDKRKETAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|392421520|ref|YP_006458124.1| pseudouridine synthase [Pseudomonas stutzeri CCUG 29243]
gi|390983708|gb|AFM33701.1| pseudouridine synthase [Pseudomonas stutzeri CCUG 29243]
Length = 377
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 105 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 164
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 165 RLKTGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 222
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q+++ ++
Sbjct: 223 RVRFGPVFMTSDLPMGRWREMSQTEVDIL 251
>gi|323342117|ref|ZP_08082350.1| pseudouridylate synthase [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464542|gb|EFY09735.1| pseudouridylate synthase [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 246
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTG +I+TNDGDFA ++HP L K Y ++ G ++ ++ EG
Sbjct: 99 RVFPVGRLDRETTGALILTNDGDFAYYMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGIT 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG + + + + I +HEG+N ++R++ + GL + L R +IG
Sbjct: 159 IEGVEYKGVEISRVKYDAAKDKTQFSITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLD 218
Query: 142 LPSDLGIGMHVELKQSDLK 160
+ +L IG + ELK ++K
Sbjct: 219 I-DELKIGQYRELKPFEVK 236
>gi|418156526|ref|ZP_12793245.1| hypothetical protein SPAR41_0304 [Streptococcus pneumoniae GA16833]
gi|353825803|gb|EHE05967.1| hypothetical protein SPAR41_0304 [Streptococcus pneumoniae GA16833]
Length = 202
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 46 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 95
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 96 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 155
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 156 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 197
>gi|260584045|ref|ZP_05851793.1| ribosomal small subunit pseudouridine synthase A [Granulicatella
elegans ATCC 700633]
gi|260158671|gb|EEW93739.1| ribosomal small subunit pseudouridine synthase A [Granulicatella
elegans ATCC 700633]
Length = 243
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TV 81
+F VGRLD+ T G +++TN+G + A+ P ++K Y+A I+G + + ++ +G T+
Sbjct: 96 VFPVGRLDIDTHGFLLLTNNGALSHAMLSPKKHVEKTYVAKIEGIMTQEDQVSFEKGITL 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+G C P +E+L + ++I + EG+ H+V+ +VK G + L+R+ +G
Sbjct: 156 DDGYECMPAHLEILSVDKNHQASLVQIKIKEGKFHQVKRMVKACGKTVIDLQRISMGPLH 215
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L L +G LK S+L+ +
Sbjct: 216 LDKSLKLGEFRSLKDSELEAL 236
>gi|336066230|ref|YP_004561088.1| pseudouridine synthase [Erysipelothrix rhusiopathiae str. Fujisawa]
gi|334296176|dbj|BAK32047.1| pseudouridine synthase [Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 246
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTG +I+TNDGDFA ++HP L K Y ++ G ++ ++ EG
Sbjct: 99 RVFPVGRLDRETTGALILTNDGDFAYYMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGIT 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG + + + + I +HEG+N ++R++ + GL + L R +IG
Sbjct: 159 IEGVEYKGVEISRVKYDAAKDKTQFSITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLD 218
Query: 142 LPSDLGIGMHVELKQSDLK 160
+ +L IG + ELK ++K
Sbjct: 219 I-DELKIGQYRELKPFEVK 236
>gi|410475776|ref|YP_006742535.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae gamPNI0373]
gi|444386812|ref|ZP_21184839.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PCS125219]
gi|444390560|ref|ZP_21188475.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PCS70012]
gi|444392830|ref|ZP_21190518.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PCS81218]
gi|444395050|ref|ZP_21192598.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0002]
gi|444396751|ref|ZP_21194238.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0006]
gi|444398817|ref|ZP_21196293.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0007]
gi|444402127|ref|ZP_21199301.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0008]
gi|444404077|ref|ZP_21201040.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0009]
gi|444407121|ref|ZP_21203788.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0010]
gi|444417502|ref|ZP_21213532.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0360]
gi|444420460|ref|ZP_21216248.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0427]
gi|406368721|gb|AFS42411.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae gamPNI0373]
gi|444254563|gb|ELU60996.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PCS125219]
gi|444257023|gb|ELU63361.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PCS70012]
gi|444259019|gb|ELU65336.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0002]
gi|444261982|gb|ELU68280.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0006]
gi|444262797|gb|ELU69067.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PCS81218]
gi|444266999|gb|ELU72921.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0008]
gi|444269934|gb|ELU75731.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0007]
gi|444270717|gb|ELU76468.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0010]
gi|444277503|gb|ELU83009.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0009]
gi|444283418|gb|ELU88615.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0360]
gi|444284722|gb|ELU89840.1| putative 16S pseudouridylate 516 synthase [Streptococcus pneumoniae
PNI0427]
Length = 240
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|397653905|ref|YP_006494588.1| hypothetical protein CULC0102_1154 [Corynebacterium ulcerans 0102]
gi|393402861|dbj|BAM27353.1| hypothetical protein CULC0102_1154 [Corynebacterium ulcerans 0102]
Length = 267
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HP ++ K Y+AT+ G +KR + + +G
Sbjct: 124 RLFHVGRLDAATEGLLLLTNDGELANRLMHPKYEVAKTYLATVLGEADKRLVKQLRDGIE 183
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ D V+++ + IRI +HEGR H VR ++K AG + L R +I +
Sbjct: 184 LDDGPAKADFVQIVDTHQ--GKSLIRIELHEGRKHIVRRMLKTAGFPVERLVRTKIHTIQ 241
Query: 142 L 142
L
Sbjct: 242 L 242
>gi|315612784|ref|ZP_07887695.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis ATCC 49296]
gi|315314894|gb|EFU62935.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis ATCC 49296]
Length = 241
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+ +
Sbjct: 88 PDIQSDQLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVNKSYQVVVNGPLTSDHIQS 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
EG V ++GT C P +E+L I + EG+ H+++++ + G+K+ +LKR
Sbjct: 148 FKEGIVFLDGTTCKPAQLEIL--SSSPSESHASITISEGKFHQIKKMFLSVGVKVTALKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLMGW 164
++ G F L +L G + L +L+++ +
Sbjct: 206 VQFGDFTLDPELAEGQYRPLNPEELEIIKY 235
>gi|385839575|ref|YP_005877205.1| Ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris A76]
gi|358750803|gb|AEU41782.1| Ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris A76]
Length = 242
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+I++NDG ++ P ++KEY A IDG V + SEG
Sbjct: 93 RKDIFPVGRLDKNTEGLLILSNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFSEG 152
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
T+ G P + + + IR+++HEG+ H+V+ + + + + LKR
Sbjct: 153 LTLKNGEKARPGELFVEKTYKGDSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKR 212
Query: 135 LRIGGFRLPSDLGIGMH 151
+R+G L SDL +G +
Sbjct: 213 IRMGNLALDSDLALGAY 229
>gi|125625272|ref|YP_001033755.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris MG1363]
gi|124494080|emb|CAL99081.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris MG1363]
Length = 328
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+I+TNDG ++ P ++KEY A IDG V + +EG
Sbjct: 179 RKDIFPVGRLDKNTEGLLILTNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFAEG 238
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
T+ G P + + + IR+++HEG+ H+V+ + + + + LKR
Sbjct: 239 LTLKNGEKARPGELFVEKTYKGDSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKR 298
Query: 135 LRIGGFRLPSDLGIGMH 151
+R+G L SDL +G +
Sbjct: 299 IRMGNLALDSDLALGAY 315
>gi|400287770|ref|ZP_10789802.1| ribosomal large subunit pseudouridine synthase B [Psychrobacter sp.
PAMC 21119]
Length = 315
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R VGRLD+ +TGL++ TNDG+ A + HPS ++ +EY + G V
Sbjct: 92 ERLPKLTHDRWVMVGRLDINSTGLLLFTNDGEMAHRLMHPSGEVTREYAVRVLGEVTSDI 151
Query: 73 LIAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
A++ G ++E GT D+ E + + + EGRN EVR L ++ GLK+
Sbjct: 152 ARALTAGVMLEDGTAKFEDIKE---GGGEGVNKWYHVQLKEGRNREVRRLFESQGLKVSR 208
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
L R R G LP +L G +EL + D+ +
Sbjct: 209 LLRTRYGTIALPKELRTGRFLELDRKDINTL 239
>gi|348029543|ref|YP_004872229.1| pseudouridine synthase [Glaciecola nitratireducens FR1064]
gi|347946886|gb|AEP30236.1| pseudouridine synthase [Glaciecola nitratireducens FR1064]
Length = 167
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 13/149 (8%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+P P ++ GRLD + GL+++TNDG A +S P +K K Y ++GA + L +
Sbjct: 19 IPIPNIYAAGRLDRDSEGLLVLTNDGKLANTISSPKNKTSKTYWVQVEGAPSSSDLDKLR 78
Query: 78 EGTVI-EGTHCT--------PDVVELLPP---QPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G V+ +G T PDV E PP + +IP + I + EGRN +VR + +
Sbjct: 79 NGVVLNDGPTLTAKVEKMEVPDVWERTPPVRFRANIPTTWLSITITEGRNRQVRRMTAHI 138
Query: 126 GLKLYSLKRLRIGGFRLPSDLGIGMHVEL 154
G L R RIG + L ++ G +VEL
Sbjct: 139 GFPTLRLIRYRIGNWTL-DNIANGEYVEL 166
>gi|422940322|ref|ZP_16967659.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
gi|339890016|gb|EGQ79209.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
Length = 234
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R+F++GRLD T+GLI++TNDG+ + HP S++ K+Y I G + K + + +G
Sbjct: 93 KRIFSIGRLDYMTSGLILLTNDGELFNRIVHPKSEIYKKYYVKIFGEIKKEEIDELKKGV 152
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++ P ++ + D + + I + EGRN ++R +++ G K+ L+R +IG
Sbjct: 153 LLNDGKTLP--AKISGIKYDKNKTSMYISIREGRNRQIRRMIEKFGYKVLMLRREKIGEL 210
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + EL + +++ +
Sbjct: 211 SL-GDLEEGKYRELTKQEIEYL 231
>gi|284048580|ref|YP_003398919.1| pseudouridine synthase [Acidaminococcus fermentans DSM 20731]
gi|283952801|gb|ADB47604.1| pseudouridine synthase [Acidaminococcus fermentans DSM 20731]
Length = 244
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 67/121 (55%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD T GL+++TNDG+ AQ ++HPS + K Y + G V + L + G
Sbjct: 99 RLYPVGRLDYLTEGLLLMTNDGELAQHLTHPSHHVDKTYEVEVHGRVPEEKLDVLRLGVP 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P VV + P+ R + +HEGRN +VR + G + SLKR+++G
Sbjct: 159 LEDGLTAPAVVYVKKWDPEKNLTRFTVTIHEGRNRQVRRMCDFIGFPVKSLKRIQVGTLT 218
Query: 142 L 142
L
Sbjct: 219 L 219
>gi|253576375|ref|ZP_04853705.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844268|gb|EES72286.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 256
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
+ DYLK + R++ VGRLD T GL+++TNDG+FA ++HP + K Y+A
Sbjct: 92 IVTDYLKGI--------KERVYPVGRLDYDTEGLLLLTNDGEFAHLLTHPKHHVPKTYLA 143
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
T+ G + L + +G ++E P VE P+ I I +HEGRN +VR +
Sbjct: 144 TVKGVPHGTALDKLKQGVMLEDGMTAPAEVEYYDIDPEEKYATISITIHEGRNRQVRRMF 203
Query: 123 KNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+ LKR+ G L +L G++ L + ++
Sbjct: 204 DAISHPVTRLKRISFGDLVL-GNLKRGLYRHLTKEEV 239
>gi|148994694|ref|ZP_01823798.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP9-BS68]
gi|168489757|ref|ZP_02713956.1| RNA pseudouridine synthase family protein [Streptococcus pneumoniae
SP195]
gi|417678254|ref|ZP_12327654.1| hypothetical protein SPAR50_0282 [Streptococcus pneumoniae GA17570]
gi|418124912|ref|ZP_12761834.1| hypothetical protein SPAR86_0282 [Streptococcus pneumoniae GA44511]
gi|418190756|ref|ZP_12827261.1| hypothetical protein SPAR96_0279 [Streptococcus pneumoniae GA47388]
gi|418213491|ref|ZP_12840226.1| hypothetical protein SPAR118_0282 [Streptococcus pneumoniae
GA54644]
gi|418233509|ref|ZP_12860090.1| hypothetical protein SPAR17_0283 [Streptococcus pneumoniae GA08780]
gi|419483555|ref|ZP_14023331.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA43257]
gi|419507380|ref|ZP_14047036.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA49542]
gi|421219523|ref|ZP_15676385.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070425]
gi|421221840|ref|ZP_15678641.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070531]
gi|421278082|ref|ZP_15728894.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17301]
gi|421293420|ref|ZP_15744147.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|421300010|ref|ZP_15750682.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
gi|147927094|gb|EDK78134.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP9-BS68]
gi|183571795|gb|EDT92323.1| RNA pseudouridine synthase family protein [Streptococcus pneumoniae
SP195]
gi|332075138|gb|EGI85608.1| hypothetical protein SPAR50_0282 [Streptococcus pneumoniae GA17570]
gi|353801201|gb|EHD81508.1| hypothetical protein SPAR86_0282 [Streptococcus pneumoniae GA44511]
gi|353858355|gb|EHE38315.1| hypothetical protein SPAR96_0279 [Streptococcus pneumoniae GA47388]
gi|353870774|gb|EHE50645.1| hypothetical protein SPAR118_0282 [Streptococcus pneumoniae
GA54644]
gi|353890093|gb|EHE69860.1| hypothetical protein SPAR17_0283 [Streptococcus pneumoniae GA08780]
gi|379583066|gb|EHZ47943.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA43257]
gi|379613515|gb|EHZ78227.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA49542]
gi|395590931|gb|EJG51231.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070531]
gi|395591323|gb|EJG51619.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070425]
gi|395883201|gb|EJG94244.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA17301]
gi|395896474|gb|EJH07441.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|395901107|gb|EJH12044.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
Length = 240
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEIFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVEIFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|449106795|ref|ZP_21743457.1| pseudouridine synthase [Treponema denticola ASLM]
gi|451968495|ref|ZP_21921724.1| pseudouridine synthase [Treponema denticola US-Trep]
gi|448964145|gb|EMB44818.1| pseudouridine synthase [Treponema denticola ASLM]
gi|451702508|gb|EMD56910.1| pseudouridine synthase [Treponema denticola US-Trep]
Length = 234
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 8/143 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD+ + G+I+ TNDGDF+ V HPSS+++KEY L G
Sbjct: 99 RLYNIGRLDMLSGGVILFTNDGDFSAKVEHPSSEIEKEYEVITVFEYPDEILQKFLRGVR 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG + E I + ++RIV+ EG+N E+R ++K +K+ L R+RIG
Sbjct: 159 IEGVFYKALLAE------RISKNKMRIVLIEGKNREIRRVLKFFNIKIKKLTRVRIGCVH 212
Query: 142 LPSDLGIGMHVELKQSDLK-LMG 163
L SDL G H L ++K L+G
Sbjct: 213 L-SDLPSGKHRPLTSEEIKGLLG 234
>gi|339301115|ref|ZP_08650235.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae ATCC 13813]
gi|417005879|ref|ZP_11944449.1| hypothetical protein FSLSAGS3026_08765 [Streptococcus agalactiae
FSL S3-026]
gi|319745443|gb|EFV97749.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
agalactiae ATCC 13813]
gi|341576060|gb|EGS26471.1| hypothetical protein FSLSAGS3026_08765 [Streptococcus agalactiae
FSL S3-026]
Length = 240
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 72/127 (56%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ TTG +++TN+G+ A + P + K Y A I G + + ++A +G ++
Sbjct: 96 VFPVGRLDIDTTGFLLLTNNGELAHKILSPKKHVDKCYEAKISGIMTEDDILAFDKGIIL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P ++E++ + ++I + EG+ H+V+ +V G ++ LKRL +G +L
Sbjct: 156 KDFTCLPALLEIVEVNQVKNQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLSMGNLQL 215
Query: 143 PSDLGIG 149
L G
Sbjct: 216 DKQLESG 222
>gi|409397783|ref|ZP_11248646.1| pseudouridine synthase [Pseudomonas sp. Chol1]
gi|409117917|gb|EKM94343.1| pseudouridine synthase [Pseudomonas sp. Chol1]
Length = 378
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 104 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 163
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 164 RLKTGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 221
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q+++ ++
Sbjct: 222 RVRFGPVFMTSDLPMGRWREMSQAEVDIL 250
>gi|422605560|ref|ZP_16677573.1| ribosomal large subunit pseudouridine synthase B, partial
[Pseudomonas syringae pv. mori str. 301020]
gi|330889215|gb|EGH21876.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. mori str. 301020]
Length = 396
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|323141768|ref|ZP_08076638.1| pseudouridylate synthase [Phascolarctobacterium succinatutens YIT
12067]
gi|322413757|gb|EFY04606.1| pseudouridylate synthase [Phascolarctobacterium succinatutens YIT
12067]
Length = 241
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD T GL+++TNDG AQA+ HPS ++ K Y + G V + L + G
Sbjct: 96 RVFPVGRLDFNTEGLLLLTNDGALAQALMHPSHEVNKTYFVKVPGIVPQEKLDQLRLGVK 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P +V L + I +HEGRN ++R + G + LKR+++G +
Sbjct: 156 LEDGPTAPAIVNLRDYDHERGFTLFDITIHEGRNRQIRRMCDAIGFPVRDLKRIKLGPLQ 215
Query: 142 LPSDLGIGMHVELKQSDL 159
L +LG G L + +L
Sbjct: 216 L-QNLGRGKFRSLSEQEL 232
>gi|387929587|ref|ZP_10132264.1| Pseudouridine synthase [Bacillus methanolicus PB1]
gi|387586405|gb|EIJ78729.1| Pseudouridine synthase [Bacillus methanolicus PB1]
Length = 239
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+FA + HP ++++K Y+A G +K L ++ +G
Sbjct: 92 KQRVYPVGRLDYDTSGLLLLTNDGEFANLLMHPRNEIEKVYVAKTKGIPSKEKLKSLEKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E P +LL I I +HEGRN +VR + + G + LKR R G
Sbjct: 152 IHLEDGKTAPAKTKLLSLDKRKQTAIIEITIHEGRNRQVRRMFEAIGHSVLKLKRERYGF 211
Query: 140 FRL 142
L
Sbjct: 212 LTL 214
>gi|149006033|ref|ZP_01829762.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP18-BS74]
gi|307126496|ref|YP_003878527.1| RNA pseudouridine synthase family protein [Streptococcus pneumoniae
670-6B]
gi|417676061|ref|ZP_12325474.1| hypothetical protein SPAR148_0259 [Streptococcus pneumoniae
GA17545]
gi|418111639|ref|ZP_12748644.1| hypothetical protein SPAR72_0336 [Streptococcus pneumoniae GA41538]
gi|418154335|ref|ZP_12791066.1| hypothetical protein SPAR39_0292 [Streptococcus pneumoniae GA16242]
gi|418224735|ref|ZP_12851365.1| hypothetical protein SPAR141_0259 [Streptococcus pneumoniae NP112]
gi|419465938|ref|ZP_14005824.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05248]
gi|419511742|ref|ZP_14051376.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05578]
gi|419516013|ref|ZP_14055631.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02506]
gi|421282530|ref|ZP_15733320.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
gi|147762389|gb|EDK69350.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP18-BS74]
gi|306483558|gb|ADM90427.1| RNA pseudouridine synthase family protein [Streptococcus pneumoniae
670-6B]
gi|332076726|gb|EGI87188.1| hypothetical protein SPAR148_0259 [Streptococcus pneumoniae
GA17545]
gi|353786696|gb|EHD67107.1| hypothetical protein SPAR72_0336 [Streptococcus pneumoniae GA41538]
gi|353822627|gb|EHE02802.1| hypothetical protein SPAR39_0292 [Streptococcus pneumoniae GA16242]
gi|353883379|gb|EHE63187.1| hypothetical protein SPAR141_0259 [Streptococcus pneumoniae NP112]
gi|379547510|gb|EHZ12647.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05248]
gi|379636212|gb|EIA00770.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA05578]
gi|379640016|gb|EIA04555.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02506]
gi|395884500|gb|EJG95538.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
Length = 240
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEIFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVEIFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|422598917|ref|ZP_16673170.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|330989187|gb|EGH87290.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 408
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|422581364|ref|ZP_16656507.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330866214|gb|EGH00923.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. aesculi str. 0893_23]
Length = 408
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|237799081|ref|ZP_04587542.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331021935|gb|EGI01992.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 409
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|375309070|ref|ZP_09774351.1| pseudouridine synthase [Paenibacillus sp. Aloe-11]
gi|390453443|ref|ZP_10238971.1| ribosomal large subunit pseudouridine synthase B [Paenibacillus
peoriae KCTC 3763]
gi|375078379|gb|EHS56606.1| pseudouridine synthase [Paenibacillus sp. Aloe-11]
Length = 252
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
+ DYLK + R++ VGRLD T GL+++TNDG+FA ++HP + K Y+A
Sbjct: 84 IVSDYLKGV--------KERVYPVGRLDYDTEGLLLLTNDGEFANLLTHPKHHVPKTYVA 135
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
T+ G + L + +G V+E P VE PD I+I ++EGRN +VR +
Sbjct: 136 TVKGVPHGTELDKLKKGIVLEDGITAPAEVEYKDVDPDGKESVIQITIYEGRNRQVRRMF 195
Query: 123 KNAGLKLYSLKRLRIGGFRL 142
+ + LKR+ G L
Sbjct: 196 EAISHPVIRLKRIAFGDLLL 215
>gi|310642601|ref|YP_003947359.1| pseudouridine synthase [Paenibacillus polymyxa SC2]
gi|386041662|ref|YP_005960616.1| ribosomal large subunit pseudouridine synthase B [Paenibacillus
polymyxa M1]
gi|309247551|gb|ADO57118.1| Pseudouridine synthase [Paenibacillus polymyxa SC2]
gi|343097700|emb|CCC85909.1| ribosomal large subunit pseudouridine synthase B [Paenibacillus
polymyxa M1]
Length = 252
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
+ DYLK + R++ VGRLD T GL+++TNDG+FA ++HP + K Y+A
Sbjct: 84 IVSDYLKGV--------KERVYPVGRLDYDTEGLLLLTNDGEFANLLTHPKHHVPKTYVA 135
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
T+ G + L + +G V+E P VE PD I+I ++EGRN +VR +
Sbjct: 136 TVKGVPHGTELDKLKKGIVLEDGITAPAEVEYKDVDPDGKESVIQITIYEGRNRQVRRMF 195
Query: 123 KNAGLKLYSLKRLRIGGFRL 142
+ + LKR+ G L
Sbjct: 196 EAISHPVIRLKRIAFGDLLL 215
>gi|71735145|ref|YP_275686.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|289650389|ref|ZP_06481732.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. aesculi str. 2250]
gi|422682979|ref|ZP_16741242.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|71555698|gb|AAZ34909.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|331012316|gb|EGH92372.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
Length = 408
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|422668017|ref|ZP_16727877.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|330980378|gb|EGH78489.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 408
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|121535833|ref|ZP_01667633.1| pseudouridine synthase [Thermosinus carboxydivorans Nor1]
gi|121305605|gb|EAX46547.1| pseudouridine synthase [Thermosinus carboxydivorans Nor1]
Length = 241
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T GL+++TNDGD A++HPS +++K Y++ I G N+ L + G
Sbjct: 96 RVYPVGRLDYNTEGLLLLTNDGDLTHALTHPSHEIKKTYVSKIAGLPNEEQLDRLRAGIK 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+ +P V LL P + I +HEGRN +VR + + G + SLKR +
Sbjct: 156 LSDGMTSPAAVRLLDFDPVKQVAVVEITIHEGRNRQVRRMFEAIGHPVKSLKRTKYAFLT 215
Query: 142 L 142
L
Sbjct: 216 L 216
>gi|399520797|ref|ZP_10761569.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399111286|emb|CCH38128.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 385
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V + L
Sbjct: 102 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYQMDREYAVRVRGEVTEEMLE 161
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 162 NLKNGVMLEDGPAKFTDIKEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 219
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L S+L +G E+ Q ++ ++
Sbjct: 220 RVRFGPVFLTSELTMGRWREMDQREVDIL 248
>gi|417939143|ref|ZP_12582436.1| pseudouridylate synthase [Streptococcus infantis SK970]
gi|343390588|gb|EGV03168.1| pseudouridylate synthase [Streptococcus infantis SK970]
Length = 240
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DDY ++ +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLMDDYARA----------KEVFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + ++G ++ C P +EL+ + +R+ + EG+ H+V+
Sbjct: 134 LALVKGMMTNADVETFAQGIPLKDFTCQPAKLELVSVDTGKSQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+V G ++ L+RL +G L DL G L + +L+
Sbjct: 194 MVAYCGKEVVDLQRLTMGTLTLDEDLQRGEWRRLSKEELE 233
>gi|311030759|ref|ZP_07708849.1| pseudouridine synthase [Bacillus sp. m3-13]
Length = 242
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 70/121 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+FA + HP+S+++K Y+A + G ++ + ++ G
Sbjct: 94 RIYPVGRLDYDTSGLLLMTNDGEFANVLMHPASEVEKVYVAKLKGIPSREAIKSLERGIK 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P ++LL + I +HEGRN +VR + + G + LKR R G
Sbjct: 154 LEDGKTAPARIKLLSMERTKNTSIFEISIHEGRNRQVRRMFEAIGHPVMKLKRERYGFLN 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|348172657|ref|ZP_08879551.1| pseudouridylate synthase ribosomal large subunit [Saccharopolyspora
spinosa NRRL 18395]
Length = 255
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DYL+ + +LF VGRLD T GL+++TNDG+ A + HPS K++K Y+A +
Sbjct: 104 DYLRERE--------GKLFHVGRLDQDTEGLLLITNDGELANRLMHPSYKVRKTYLAEVL 155
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G++ K + EG +E D +L+ + R + IV+HEGRN VR L+K+
Sbjct: 156 GSIPKDLGQQLREGVELEDGLVKVDRFKLVDMNQN--RSLVEIVLHEGRNRIVRRLLKHV 213
Query: 126 GLKLYSLKRLRIGGFRLPSD 145
G + L R RIG RL ++
Sbjct: 214 GYPVQRLVRTRIGDVRLTNE 233
>gi|192360200|ref|YP_001982275.1| RNA pseudouridylate synthase family protein [Cellvibrio japonicus
Ueda107]
gi|190686365|gb|ACE84043.1| RNA pseudouridylate synthase family protein [Cellvibrio japonicus
Ueda107]
Length = 376
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R +VGRLD T+GL++ TNDG+ A + HPSS + +EY+ I G V+
Sbjct: 179 PSLKGERWISVGRLDFNTSGLLLFTNDGELANKLMHPSSVIDREYLVRIQGDVDDDMKER 238
Query: 76 ISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ EG ++ +G D+V+ + VV EGRN EVR L ++ G+K+ LKR
Sbjct: 239 LLEGVLLDDGVARFTDIVDGAGEGKN---RWFYCVVMEGRNREVRRLWESQGVKVSRLKR 295
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLK 160
+R +PS + +G EL + +++
Sbjct: 296 VRYANIFIPSHVRVGQWTELTEQEIR 321
>gi|443642977|ref|ZP_21126827.1| Ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. syringae B64]
gi|443282994|gb|ELS41999.1| Ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. syringae B64]
Length = 409
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|116873710|ref|YP_850491.1| ribosomal small subunit pseudouridine synthase A [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|116742588|emb|CAK21712.1| ribosomal small subunit pseudouridine synthase A [Listeria
welshimeri serovar 6b str. SLCC5334]
Length = 233
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI- 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A +EG V+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGEVLLEDVKAFAEGIVLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I++ + EG+ H+V+ + G + LKR+ +G +L
Sbjct: 157 DGYICKPARLEIINPN------EIKVTIQEGKFHQVKRMFAARGKTVSYLKRISMGQLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DESLELGEYRPLTETELAILQNK 233
>gi|56808585|ref|ZP_00366316.1| COG1187: 16S rRNA uridine-516 pseudouridylate synthase and related
pseudouridylate synthases [Streptococcus pyogenes M49
591]
Length = 141
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 66/110 (60%)
Query: 29 LDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGTHCT 88
+D T+G++I+TNDGDF + HP +++ K Y+A + G K +L ++ G VI+G
Sbjct: 1 MDWDTSGVLILTNDGDFTDTMIHPRNEIDKVYLARVKGIATKENLRPLTRGIVIDGKKTK 60
Query: 89 PDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
P ++ + D R + + +HEGRNH+V+++ ++ GL + L R R G
Sbjct: 61 PARYNIVRVEADKNRSIVELTIHEGRNHQVKKMFESVGLLVDKLSRTRFG 110
>gi|42780671|ref|NP_977918.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
ATCC 10987]
gi|47569145|ref|ZP_00239833.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
G9241]
gi|206978260|ref|ZP_03239138.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
H3081.97]
gi|217959048|ref|YP_002337596.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
AH187]
gi|222095202|ref|YP_002529262.1| ribosomal large subunit pseudouridine synthase b [Bacillus cereus
Q1]
gi|228984651|ref|ZP_04144824.1| Pseudouridine synthase [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|229138265|ref|ZP_04266860.1| Pseudouridine synthase [Bacillus cereus BDRD-ST26]
gi|229155139|ref|ZP_04283251.1| Pseudouridine synthase [Bacillus cereus ATCC 4342]
gi|229195772|ref|ZP_04322532.1| Pseudouridine synthase [Bacillus cereus m1293]
gi|300117500|ref|ZP_07055290.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
SJ1]
gi|301053111|ref|YP_003791322.1| pseudouridylate synthase [Bacillus cereus biovar anthracis str. CI]
gi|375283546|ref|YP_005103984.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
NC7401]
gi|384179504|ref|YP_005565266.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|402553047|ref|YP_006594318.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
FRI-35]
gi|423353947|ref|ZP_17331573.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
IS075]
gi|423371552|ref|ZP_17348892.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
AND1407]
gi|423569514|ref|ZP_17545760.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
MSX-A12]
gi|423576712|ref|ZP_17552831.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
MSX-D12]
gi|423606725|ref|ZP_17582618.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD102]
gi|42736591|gb|AAS40526.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
ATCC 10987]
gi|47554216|gb|EAL12579.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
G9241]
gi|206743509|gb|EDZ54938.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
H3081.97]
gi|217066494|gb|ACJ80744.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
AH187]
gi|221239260|gb|ACM11970.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
Q1]
gi|228587669|gb|EEK45727.1| Pseudouridine synthase [Bacillus cereus m1293]
gi|228628266|gb|EEK84981.1| Pseudouridine synthase [Bacillus cereus ATCC 4342]
gi|228645157|gb|EEL01394.1| Pseudouridine synthase [Bacillus cereus BDRD-ST26]
gi|228775045|gb|EEM23438.1| Pseudouridine synthase [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|298725335|gb|EFI65987.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
SJ1]
gi|300375280|gb|ADK04184.1| pseudouridylate synthase [Bacillus cereus biovar anthracis str. CI]
gi|324325588|gb|ADY20848.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|358352072|dbj|BAL17244.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
NC7401]
gi|401088293|gb|EJP96484.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
IS075]
gi|401101263|gb|EJQ09253.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
AND1407]
gi|401206502|gb|EJR13293.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
MSX-A12]
gi|401207708|gb|EJR14487.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
MSX-D12]
gi|401241550|gb|EJR47938.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD102]
gi|401794257|gb|AFQ08116.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
FRI-35]
Length = 242
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G +
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERGVM 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V+++ +++ +HEGRN +VR + + K+ LKR L
Sbjct: 154 LEDGKTAPARVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|423454972|ref|ZP_17431825.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG5X1-1]
gi|423472548|ref|ZP_17449291.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG6O-2]
gi|401135251|gb|EJQ42854.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG5X1-1]
gi|402428080|gb|EJV60178.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG6O-2]
Length = 242
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDG+FA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGEFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P V+++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPAQVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVMKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|392428295|ref|YP_006469306.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
intermedius JTH08]
gi|419777722|ref|ZP_14303632.1| pseudouridylate synthase [Streptococcus intermedius SK54]
gi|383844746|gb|EID82158.1| pseudouridylate synthase [Streptococcus intermedius SK54]
gi|391757441|dbj|BAM23058.1| ribosomal small subunit pseudouridine synthase A homolog
[Streptococcus intermedius JTH08]
Length = 241
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV- 81
L++VGRLD T+GL+++T++G + HP + K Y ++G ++ + + A +G V
Sbjct: 95 LYSVGRLDRDTSGLLLITDNGPLGFQLLHPQYHIAKTYEVEVNGLLDNQMIKAFQKGIVF 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++GT C P ++ + P+ + + + EG+ H+++++ G+K+ SLKR G F
Sbjct: 155 LDGTICKPALLTIHSSTPN--KSTATVTISEGKFHQIKKMFLTVGVKVLSLKRTHFGAFE 212
Query: 142 LPSDLGIGMHVELKQSDLK 160
L +L G + L Q++L+
Sbjct: 213 LDQNLAAGEYRALNQTELE 231
>gi|418969314|ref|ZP_13520443.1| pseudouridylate synthase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383352215|gb|EID29940.1| pseudouridylate synthase [Streptococcus pseudopneumoniae ATCC
BAA-960]
Length = 240
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVEIFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|16801498|ref|NP_471766.1| hypothetical protein lin2436 [Listeria innocua Clip11262]
gi|16414958|emb|CAC97663.1| lin2436 [Listeria innocua Clip11262]
Length = 233
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A S G T+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTAEDVEAFSAGVTLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I++ + EG+ H+V+ + G + LKR+ +G +L
Sbjct: 157 DGYTCKPAHLEIITPN------EIKVTIQEGKFHQVKRMFAARGKTVSYLKRISMGNLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DDSLELGEYRPLTENELLILQNK 233
>gi|419955836|ref|ZP_14471957.1| pseudouridine synthase [Pseudomonas stutzeri TS44]
gi|387967339|gb|EIK51643.1| pseudouridine synthase [Pseudomonas stutzeri TS44]
Length = 381
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 104 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 163
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 164 RLKTGVMLEDGPARFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 221
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q+++ ++
Sbjct: 222 RVRFGPVFMTSDLPMGRWREMSQAEVDIL 250
>gi|257438983|ref|ZP_05614738.1| ribosomal large subunit pseudouridine synthase B [Faecalibacterium
prausnitzii A2-165]
gi|257198568|gb|EEU96852.1| pseudouridylate synthase [Faecalibacterium prausnitzii A2-165]
Length = 294
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD + GL+++TNDG FAQAV+HPS + K Y T+ ++ ++ +S G V
Sbjct: 116 RLYPVGRLDKDSEGLLLMTNDGAFAQAVTHPSGGISKLYRVTVQPRADESQILKMSSGVV 175
Query: 82 I-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+ +GT P + ++ +P R + + + EG+N E+R + + GL++ LKR G
Sbjct: 176 LDDGTKTMPCAINVVTDEPG--RTVMEMTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVV 233
Query: 141 RLPSDLGIGMHVELKQSDL 159
+L L G + EL ++++
Sbjct: 234 KL-GMLKPGTYRELTKAEV 251
>gi|254481782|ref|ZP_05095025.1| conserved hypothetical protein, putative [marine gamma
proteobacterium HTCC2148]
gi|214037911|gb|EEB78575.1| conserved hypothetical protein, putative [marine gamma
proteobacterium HTCC2148]
Length = 298
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L R ++GRLD T+GL++ T DGD A + HPSS +++EY+ + G +
Sbjct: 107 ERLPKLKSGRWISIGRLDYNTSGLLLFTTDGDLANKLMHPSSNIEREYMVRVMGEWKEDM 166
Query: 73 LIAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
L + +G ++E G D+ + D +V+ EGRN EVR L ++ GL +
Sbjct: 167 LQRLLDGVMLEDGVARFSDIQD---GGGDGINHWFYVVIMEGRNREVRRLWESQGLTVSR 223
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
LKR+R G +PS + G VEL ++K
Sbjct: 224 LKRVRYGEVFIPSKVKQGQWVELAGKEIK 252
>gi|418131693|ref|ZP_12768569.1| hypothetical protein SPAR22_0269 [Streptococcus pneumoniae GA11304]
gi|353808485|gb|EHD88751.1| hypothetical protein SPAR22_0269 [Streptococcus pneumoniae GA11304]
Length = 240
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVEIFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|333398558|ref|ZP_08480371.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
gelidum KCTC 3527]
gi|406600097|ref|YP_006745443.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
gelidum JB7]
gi|406371632|gb|AFS40557.1| ribosomal large subunit pseudouridine synthase B [Leuconostoc
gelidum JB7]
Length = 249
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD TTG +++TNDG A + HP S++ K Y+A ++G L + G V
Sbjct: 99 RVYPIGRLDYDTTGALLLTNDGVVANQLMHPKSRVDKVYLAKVEGIATDEKLAPLKHGVV 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P V + D +R+++HEGRNH+++ +++ L + L R + F
Sbjct: 159 IKGRKTAPARVAIERVDKDKKTSMVRVIIHEGRNHQIKNMLQKVHLPVVKLTREQYAFFD 218
Query: 142 L 142
L
Sbjct: 219 L 219
>gi|52143877|ref|YP_082953.1| pseudouridylate synthase [Bacillus cereus E33L]
gi|51977346|gb|AAU18896.1| pseudouridylate synthase [Bacillus cereus E33L]
Length = 242
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G +
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERGVM 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V+++ +++ +HEGRN +VR + + K+ LKR L
Sbjct: 154 LEDGKTAPARVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|166031891|ref|ZP_02234720.1| hypothetical protein DORFOR_01592 [Dorea formicigenerans ATCC
27755]
gi|166028344|gb|EDR47101.1| pseudouridylate synthase [Dorea formicigenerans ATCC 27755]
Length = 243
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G R LF VGRLD T GL+++TNDG+ A + P + K Y A + G V K
Sbjct: 95 GQKRKDLFPVGRLDKDTVGLLLITNDGNLAHRLLSPKHHVDKCYFAKVQGNVTKDDAEKF 154
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+EG I GT P++ +P + DI + IR+ + EG+ H+V+ + + G ++ L
Sbjct: 155 AEGVNI-GTEDEPEIT--MPGKLDIIKSDDLSEIRLTIQEGKFHQVKRMFQAVGKEVVYL 211
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLK 160
KR R+G L +L G + L + +LK
Sbjct: 212 KRERMGSLILDDNLAEGEYRMLTEEELK 239
>gi|423366688|ref|ZP_17344121.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD142]
gi|401087167|gb|EJP95376.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD142]
Length = 242
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDG+FA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGEFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P V+++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPAQVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVMKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|346306219|ref|ZP_08848381.1| hypothetical protein HMPREF9457_00090 [Dorea formicigenerans
4_6_53AFAA]
gi|345905940|gb|EGX75675.1| hypothetical protein HMPREF9457_00090 [Dorea formicigenerans
4_6_53AFAA]
Length = 238
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
G R LF VGRLD T GL+++TNDG+ A + P + K Y A + G V K
Sbjct: 90 GQKRKDLFPVGRLDKDTVGLLLITNDGNLAHRLLSPKHHVDKCYFAKVQGNVTKDDAEKF 149
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+EG I GT P++ +P + DI + IR+ + EG+ H+V+ + + G ++ L
Sbjct: 150 AEGVNI-GTEDEPEIT--MPGKLDIIKSDDLSEIRLTIQEGKFHQVKRMFQAVGKEVVYL 206
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLK 160
KR R+G L +L G + L + +LK
Sbjct: 207 KRERMGSLILDDNLAEGEYRMLTEEELK 234
>gi|170660220|ref|YP_001740050.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. tomato str. DC3000]
gi|422658809|ref|ZP_16721240.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|170652970|gb|ACB22026.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. tomato str. DC3000]
gi|331017433|gb|EGH97489.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 408
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKNGVILEDGPARFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|452880766|ref|ZP_21957685.1| hypothetical protein G039_32326, partial [Pseudomonas aeruginosa
VRFPA01]
gi|452182864|gb|EME09882.1| hypothetical protein G039_32326, partial [Pseudomonas aeruginosa
VRFPA01]
Length = 279
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V++ +
Sbjct: 103 RLPRLRTGRWINVGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVSEEMI 162
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ +G ++E ++ P VV EGRN EVR L ++ GL + LK
Sbjct: 163 ERLLDGVMLEDGPAKFSDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLK 221
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L S+L +G + E+ Q ++ ++
Sbjct: 222 RVRFGPVFLTSELTMGRYREMDQREIDIL 250
>gi|440722464|ref|ZP_20902845.1| pseudouridine synthase, Rsu [Pseudomonas syringae BRIP34876]
gi|440727556|ref|ZP_20907785.1| pseudouridine synthase, Rsu [Pseudomonas syringae BRIP34881]
gi|440361316|gb|ELP98548.1| pseudouridine synthase, Rsu [Pseudomonas syringae BRIP34876]
gi|440363694|gb|ELQ00855.1| pseudouridine synthase, Rsu [Pseudomonas syringae BRIP34881]
Length = 409
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|66046810|ref|YP_236651.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. syringae
B728a]
gi|422616886|ref|ZP_16685591.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. japonica str.
M301072]
gi|422674555|ref|ZP_16733907.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. aceris str.
M302273]
gi|424068726|ref|ZP_17806175.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|424073144|ref|ZP_17810563.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|63257517|gb|AAY38613.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. syringae B728a]
gi|330897271|gb|EGH28690.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. japonica str.
M301072]
gi|330972281|gb|EGH72347.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. aceris str.
M302273]
gi|407996490|gb|EKG36960.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|407996616|gb|EKG37080.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
Length = 409
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|416017760|ref|ZP_11564797.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. glycinea str. B076]
gi|416025853|ref|ZP_11569501.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422406255|ref|ZP_16483287.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. glycinea str. race 4]
gi|320323233|gb|EFW79321.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. glycinea str. B076]
gi|320329736|gb|EFW85725.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330881434|gb|EGH15583.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 408
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|418977963|ref|ZP_13525770.1| pseudouridylate synthase [Streptococcus mitis SK575]
gi|383349164|gb|EID27114.1| pseudouridylate synthase [Streptococcus mitis SK575]
Length = 241
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A
Sbjct: 88 PDIQSDKLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYRVEVNGLLTPDHIQA 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +E+L P + + I I EG+ H+V+++ + G+K+ SLKR
Sbjct: 148 FQKGIVFLDGTICKPARLEILSASPSLSQASITI--SEGKFHQVKKMFLSVGVKVTSLKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDL 159
G + L +L G + L +L
Sbjct: 206 THFGPWSLDENLQAGDYRPLNSEEL 230
>gi|422653710|ref|ZP_16716470.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|330966753|gb|EGH67013.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 408
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKNGVILEDGPARFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|300858398|ref|YP_003783381.1| hypothetical protein cpfrc_00980 [Corynebacterium
pseudotuberculosis FRC41]
gi|383314155|ref|YP_005375010.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
P54B96]
gi|384506667|ref|YP_005683336.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
C231]
gi|384510846|ref|YP_005690424.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
PAT10]
gi|300685852|gb|ADK28774.1| hypothetical protein cpfrc_00980 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206111|gb|ADL10453.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
C231]
gi|341824785|gb|AEK92306.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
PAT10]
gi|380869656|gb|AFF22130.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
P54B96]
Length = 373
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HP ++ K Y+AT+ G +KR + + +G
Sbjct: 230 RLFHVGRLDAATEGLLLLTNDGELANRLMHPKYEVTKTYLATVLGEADKRLIKQLRDGIE 289
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
++ D V+++ + IRI +HEGR H VR ++K AG + L R +I
Sbjct: 290 LDDGPAKADFVQIVDAHQG--KSLIRIELHEGRKHIVRRMLKTAGFPVERLVRTKI 343
>gi|149017975|ref|ZP_01834434.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP23-BS72]
gi|418102003|ref|ZP_12739080.1| hypothetical protein SPAR143_0280 [Streptococcus pneumoniae NP070]
gi|419474681|ref|ZP_14014523.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA14688]
gi|419485788|ref|ZP_14025555.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA44128]
gi|421208160|ref|ZP_15665185.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070005]
gi|147931539|gb|EDK82517.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP23-BS72]
gi|353777715|gb|EHD58187.1| hypothetical protein SPAR143_0280 [Streptococcus pneumoniae NP070]
gi|379562188|gb|EHZ27202.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA14688]
gi|379588697|gb|EHZ53537.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA44128]
gi|395576630|gb|EJG37184.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070005]
Length = 240
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARSKE----------VFPVGRLDINTHGLLLLTNDGQLAHVLLSPKRHVGKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCKPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|385262233|ref|ZP_10040347.1| pseudouridylate synthase [Streptococcus sp. SK643]
gi|385191229|gb|EIF38647.1| pseudouridylate synthase [Streptococcus sp. SK643]
Length = 240
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDLARSKE----------VFPVGRLDIDTHGLLLLTNDGKLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
A + G + + + ++G ++ C P +EL+ P+ + +IR+ + EG+ H+V+
Sbjct: 134 QAQVKGMMTQEDVETFAKGIPLKDFTCQPAKLELVSIDPEKNQSQIRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+V G ++ L+RL +G L +L G L + +L+
Sbjct: 194 MVAYCGKEVMDLQRLTMGTLVLDENLERGEWRRLTKEELE 233
>gi|291563383|emb|CBL42199.1| ribosomal small subunit pseudouridine synthase A
[butyrate-producing bacterium SS3/4]
Length = 265
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 7/150 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD+ T GL+++TNDG A + P + K Y A G V + EG
Sbjct: 113 RKDLFPVGRLDIDTEGLLLITNDGALAHRLLAPGHHVDKVYEARCKGFVPDEAVQRFREG 172
Query: 80 -TVIEGTHCTPDVVELLPPQPDIP------RPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
T+ +G C P +E+L +P+ P +R+ +HEG+ H+V+ +++ G + L
Sbjct: 173 MTLADGLSCMPSELEILERKPEDPETGTAAESLVRLTLHEGKFHQVKRMMEETGCPVLHL 232
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KRL +G +L L G + +L + +L+
Sbjct: 233 KRLSMGPLKLDDALKTGEYRKLTDKERELL 262
>gi|213968651|ref|ZP_03396793.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. tomato T1]
gi|301384619|ref|ZP_07233037.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. tomato Max13]
gi|302059631|ref|ZP_07251172.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. tomato K40]
gi|302130734|ref|ZP_07256724.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|422591965|ref|ZP_16666599.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|213926584|gb|EEB60137.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. tomato T1]
gi|330879716|gb|EGH13865.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
syringae pv. morsprunorum str. M302280]
Length = 408
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKNGVILEDGPARFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|89094110|ref|ZP_01167053.1| ribosomal large subunit pseudouridine synthase B [Neptuniibacter
caesariensis]
gi|89081585|gb|EAR60814.1| ribosomal large subunit pseudouridine synthase B [Oceanospirillum
sp. MED92]
Length = 276
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R +GRLD+ T+GL++ T DG+ A A+ HPS+++ +EY + G V++ L
Sbjct: 95 PPLKEGRWIAIGRLDINTSGLLLFTTDGELANALMHPSAQIDREYAVRVLGDVDEAMLQR 154
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ +G ++E V+ + VV EGRN EVR L ++ +++ LKR+
Sbjct: 155 LKDGVLLEDGMARFTDVQFFDGEG--ANKWYHCVVMEGRNREVRRLWESQEIQVNRLKRV 212
Query: 136 RIGGFRLPSDLGIGMHVEL 154
R G LPSD+ G EL
Sbjct: 213 RFGPLFLPSDVRSGTWKEL 231
>gi|50084073|ref|YP_045583.1| ribosomal large subunit pseudouridine synthase B (pseudouridylate
synthase) (Uracil hydrolyase) [Acinetobacter sp. ADP1]
gi|49530049|emb|CAG67761.1| putative ribosomal large subunit pseudouridine synthase B
(Pseudouridylate synthase) (Uracil hydrolyase)
[Acinetobacter sp. ADP1]
Length = 313
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + R VGRLD+ +TGL++ TNDG+ A + HPS+++++EY + G V +
Sbjct: 94 PQIANDRWVMVGRLDINSTGLLLFTNDGELANRLMHPSNEIEREYAVRVMGEVTPQIRQT 153
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ G V++ + L D ++VV EGRN EVR L ++ GLK+ L R
Sbjct: 154 LLNGVVLDDGPAKFESFSELG--GDGINRWYQVVVKEGRNREVRRLFESQGLKVSRLLRT 211
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
R G LP +L G +EL + D+
Sbjct: 212 RYGSVILPRELRTGRWIELDKGDI 235
>gi|302188863|ref|ZP_07265536.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. syringae 642]
Length = 409
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|451343137|ref|ZP_21912213.1| pseudouridine synthase [Eggerthia catenaformis OT 569 = DSM 20559]
gi|449338133|gb|EMD17285.1| pseudouridine synthase [Eggerthia catenaformis OT 569 = DSM 20559]
Length = 244
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTG+++VTNDG+FA + HPSS L K Y +IDG +N + + +G
Sbjct: 94 RVFPVGRLDYDTTGVLLVTNDGEFANLMMHPSSHLPKIYEVSIDGILNHQEKRMLEQGIY 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+EG P ++++ + I + EG+N +++++ ++ G + L RL IG +
Sbjct: 154 LEGVKTLPCEIKIVGVDEKHGTTMLMIRLIEGKNRQIKKMFESIGFNIKRLHRLSIGDIK 213
Query: 142 L 142
L
Sbjct: 214 L 214
>gi|429728268|ref|ZP_19262998.1| pseudouridylate synthase [Peptostreptococcus anaerobius VPI 4330]
gi|429150141|gb|EKX93087.1| pseudouridylate synthase [Peptostreptococcus anaerobius VPI 4330]
Length = 238
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDGD ++HP ++ K YIA++ G + + A G
Sbjct: 94 KERIYPVGRLDYETSGLLLMTNDGDLTYKITHPKHEMNKIYIASVRGIITEEEKYAFENG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IE +++L + ++ +HEG+N +VR++ + +LKR+++G
Sbjct: 154 LKIEDYITAKANLKILKTDTNKNYSVCKVTIHEGKNRQVRKMFQAINHPTMNLKRVQVGK 213
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
+ DL +G + +L + +++ +
Sbjct: 214 INI-GDLELGKYRKLTKEEIEYL 235
>gi|418082200|ref|ZP_12719402.1| hypothetical protein SPAR81_0285 [Streptococcus pneumoniae GA44288]
gi|418195096|ref|ZP_12831577.1| hypothetical protein SPAR103_0288 [Streptococcus pneumoniae
GA47688]
gi|353757637|gb|EHD38230.1| hypothetical protein SPAR81_0285 [Streptococcus pneumoniae GA44288]
gi|353863215|gb|EHE43144.1| hypothetical protein SPAR103_0288 [Streptococcus pneumoniae
GA47688]
Length = 240
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQDDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|333900198|ref|YP_004474071.1| pseudouridine synthase Rsu [Pseudomonas fulva 12-X]
gi|333115463|gb|AEF21977.1| pseudouridine synthase Rsu [Pseudomonas fulva 12-X]
Length = 384
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V++ +
Sbjct: 102 LPRPKDGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYQMDREYAVRVRGEVDEEMIE 161
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + LK
Sbjct: 162 RLKAGVMLEDGPAKFTDIQEA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 219
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G + SDL +G E+ Q ++ ++
Sbjct: 220 RVRFGPVFMTSDLPMGRWREMGQREVDIL 248
>gi|16804380|ref|NP_465865.1| hypothetical protein lmo2342 [Listeria monocytogenes EGD-e]
gi|386051313|ref|YP_005969304.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL R2-561]
gi|404284834|ref|YP_006685731.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2372]
gi|405759389|ref|YP_006688665.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2479]
gi|16411830|emb|CAD00420.1| lmo2342 [Listeria monocytogenes EGD-e]
gi|346425159|gb|AEO26684.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL R2-561]
gi|404234336|emb|CBY55739.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2372]
gi|404237271|emb|CBY58673.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes SLCC2479]
Length = 233
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI- 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A + G +
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTAEDVEAFAAGIELD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I++ + EG+ H+V+ + G + LKR+ +G +L
Sbjct: 157 DGYTCKPARLEIITPN------EIKVTIQEGKFHQVKRMFAARGKSVSYLKRISMGNLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DESLALGEYRPLTEAELAILQNK 233
>gi|422297809|ref|ZP_16385436.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
avellanae BPIC 631]
gi|407990670|gb|EKG32708.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
avellanae BPIC 631]
Length = 408
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKNGVILEDGPARFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|386813925|ref|ZP_10101149.1| putative pseudouridine synthase [planctomycete KSU-1]
gi|386403422|dbj|GAB64030.1| putative pseudouridine synthase [planctomycete KSU-1]
Length = 260
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++TVGRLD + GLI++TNDGDFA +SHP ++ K Y +DG + + + ++ G
Sbjct: 96 RIYTVGRLDKESEGLIVLTNDGDFANKLSHPRYEVNKTYFVEVDGYLTDQAIKSLESGVW 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+ P V + R R +++ EG+N E+R ++ + G K+ L+R++IG
Sbjct: 156 LSFGKTRP--VRIKNVHKGKLRSRFEMMLKEGKNREIRRMLADHGYKVRILRRIKIGNLS 213
Query: 142 LPSDLGIGMHVEL 154
+L IG + +L
Sbjct: 214 -DYNLKIGKYRKL 225
>gi|440745225|ref|ZP_20924521.1| pseudouridine synthase, Rsu [Pseudomonas syringae BRIP39023]
gi|440372901|gb|ELQ09679.1| pseudouridine synthase, Rsu [Pseudomonas syringae BRIP39023]
Length = 409
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKNGVILEVGPARFTDIQQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|407696147|ref|YP_006820935.1| S4 domain-containing protein [Alcanivorax dieselolei B5]
gi|407253485|gb|AFT70592.1| S4 domain protein [Alcanivorax dieselolei B5]
Length = 280
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 74/145 (51%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R VGRLD+ TTGL++ T DG+ A + HPS+ +EY I G + + A
Sbjct: 94 PRLQGMRWVQVGRLDINTTGLMLFTTDGELAHRLMHPSNGFVREYAVRIRGELADQQRSA 153
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ EG ++E D +E D ++ + G+ EVR L ++ GL + L R+
Sbjct: 154 LLEGVMLEDGVSKFDSIEEAGHNEDAANRWYKVSLTGGKYREVRRLFQSQGLDVSRLMRI 213
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLK 160
R G LPS L +G EL + +++
Sbjct: 214 RFGDLTLPSSLRMGRWQELTEEEIR 238
>gi|28211002|ref|NP_781946.1| ribosomal large subunit pseudouridine synthase B [Clostridium
tetani E88]
gi|28203441|gb|AAO35883.1| ribosomal large subunit pseudouridine synthase B [Clostridium
tetani E88]
Length = 234
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ +GRLD T+GLI++TNDGDF V HP + +K Y+ATI G N L +G
Sbjct: 93 KERIYPIGRLDYDTSGLILLTNDGDFYNKVIHPREEKEKVYVATIKGIPNSSELQDFKKG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
VI+ +P ++++ + + + I + EGRN +VR++ + + LKR+ +G
Sbjct: 153 LVIDDYLTSPSKIKIISVKNN--NAEVIITIMEGRNRQVRKMCEKINHPVIKLKRISVGH 210
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L DL IG L Q ++
Sbjct: 211 VGL-GDLPIGSWRYLTQKEI 229
>gi|406587967|ref|ZP_11062732.1| ribosomal small subunit pseudouridine synthase A, partial
[Streptococcus sp. GMD1S]
gi|404471035|gb|EKA15598.1| ribosomal small subunit pseudouridine synthase A, partial
[Streptococcus sp. GMD1S]
Length = 170
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 23 QLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGPLTSDHIQKFKDGIV 82
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + EG+ H+V+++ + G+K+ +LKR++ G F
Sbjct: 83 FLDGTTCKPAQLEILDISP--TESHASITISEGKFHQVKKMFLSVGVKVTALKRVQFGDF 140
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L +L G + L +L+++
Sbjct: 141 TLDPELAEGQYRPLNPEELEII 162
>gi|229029250|ref|ZP_04185341.1| Pseudouridine synthase [Bacillus cereus AH1271]
gi|229172210|ref|ZP_04299774.1| Pseudouridine synthase [Bacillus cereus MM3]
gi|423403916|ref|ZP_17381089.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG2X1-2]
gi|423460549|ref|ZP_17437346.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG5X2-1]
gi|423475454|ref|ZP_17452169.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG6X1-1]
gi|228611198|gb|EEK68456.1| Pseudouridine synthase [Bacillus cereus MM3]
gi|228732063|gb|EEL82954.1| Pseudouridine synthase [Bacillus cereus AH1271]
gi|401140602|gb|EJQ48158.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG5X2-1]
gi|401648060|gb|EJS65663.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG2X1-2]
gi|402435324|gb|EJV67358.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG6X1-1]
Length = 242
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDG+FA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGEFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P V+++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPAQVKIISWDKRKETAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|149181685|ref|ZP_01860178.1| RluB [Bacillus sp. SG-1]
gi|148850663|gb|EDL64820.1| RluB [Bacillus sp. SG-1]
Length = 243
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 69/119 (57%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GLI++TNDG+FA ++HP + K Y+A + G K L + +G
Sbjct: 92 QERIYPVGRLDYDTSGLILLTNDGEFANLLTHPRYNIDKTYVARLKGIPPKFKLKELEKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
++E P V++L + + + I +HEG+N +V+ + + G ++ LKR R
Sbjct: 152 IMLEDGKTAPAKVKVLKIEKKQDKSIVEITIHEGKNRQVKRMFEAIGYQVQKLKRERFA 210
>gi|15902300|ref|NP_357850.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae R6]
gi|116516048|ref|YP_815778.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae D39]
gi|421265358|ref|ZP_15716242.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR27]
gi|15457806|gb|AAK99060.1| Ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae R6]
gi|116076624|gb|ABJ54344.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae D39]
gi|395869380|gb|EJG80495.1| pseudouridine synthase family protein [Streptococcus pneumoniae
SPAR27]
Length = 240
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARSKE----------VFPVGRLDINTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P +E+L + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCQPARLEILSTDAEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|226943690|ref|YP_002798763.1| Pseudouridine synthase [Azotobacter vinelandii DJ]
gi|226718617|gb|ACO77788.1| Pseudouridine synthase [Azotobacter vinelandii DJ]
Length = 382
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V + L
Sbjct: 104 RLPRLKEGRWVNIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVTEEML 163
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ G ++E G D+ E P + VV EGRN EVR L ++ GL + L
Sbjct: 164 ETLKRGVMLEDGPARFTDIQEA--PGGEGLNHWFHCVVMEGRNREVRRLWESQGLVVSRL 221
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KR+R G + SDL +G E+ Q ++ ++
Sbjct: 222 KRVRFGPVFMTSDLAMGRWREMTQDEVDIL 251
>gi|421529852|ref|ZP_15976369.1| RNA-binding S4 domain-containing protein [Pseudomonas putida S11]
gi|402212713|gb|EJT84093.1| RNA-binding S4 domain-containing protein [Pseudomonas putida S11]
Length = 334
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V++ +
Sbjct: 86 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDEEMIE 145
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ G+ + LKR
Sbjct: 146 RLKAGVMLEDGPAKFTDIQKAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGMVVSRLKR 204
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 205 VRFGPVFLNSDLPMGRWREMTQGEIDIL 232
>gi|329768850|ref|ZP_08260278.1| hypothetical protein HMPREF0433_00042 [Gemella sanguinis M325]
gi|328837213|gb|EGF86850.1| hypothetical protein HMPREF0433_00042 [Gemella sanguinis M325]
Length = 235
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG+ A + P + K+Y +DG + H+ I +G V+E
Sbjct: 96 FPVGRLDKDTEGLMLLTNDGELAHKLISPKKDVIKKYYVEVDGELKVEHVTIIRDGVVLE 155
Query: 84 G---THCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
T C +E+L + R I I EG+ H+V+ ++K+ G+ + LKRL IG
Sbjct: 156 DGYKTKCAA--LEILTSNTEKSRAYISIT--EGKFHQVKRMMKSLGVNVTYLKRLSIGSL 211
Query: 141 RLPSDLGIGMHVELKQSDLK 160
L L +G + L ++LK
Sbjct: 212 VLDESLKLGEYRYLTDTELK 231
>gi|319949182|ref|ZP_08023271.1| pseudouridylate synthase [Dietzia cinnamea P4]
gi|319437168|gb|EFV92199.1| pseudouridylate synthase [Dietzia cinnamea P4]
Length = 252
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD T GL++VTNDG+ A + HPS ++ K Y+AT+ G V K + EG
Sbjct: 109 RLFHVGRLDADTEGLLLVTNDGELAHRLMHPSYEVSKTYMATVTGVVGKGIGKQLREGVE 168
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E D LL R +++V+HEGR H VR L+ G + SL R R G
Sbjct: 169 LEDGPAKVDQFSLLDVHD--GRSLVKVVLHEGRKHIVRRLLAEVGHPVESLVRTRFGSVA 226
Query: 142 L 142
L
Sbjct: 227 L 227
>gi|164687721|ref|ZP_02211749.1| hypothetical protein CLOBAR_01363 [Clostridium bartlettii DSM
16795]
gi|164603495|gb|EDQ96960.1| pseudouridylate synthase [Clostridium bartlettii DSM 16795]
Length = 258
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 12/162 (7%)
Query: 10 SWDKRNP----GLPRPRL----FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYI 61
++DKR+P + + L F VGRLD T GL+++TNDG A V P + K Y
Sbjct: 96 TFDKRDPIVLDLIDKEDLVFEPFPVGRLDKDTEGLLVLTNDGQLAHRVLSPKKHVPKTYY 155
Query: 62 ATIDGAVNKRHLIAISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
A I+G V + + A ++G T+ +G P EL+ + D I + +HEG+ H+V+
Sbjct: 156 AKIEGIVTEEDIKAFAKGVTLDDGYETMP--AELIILKSD-EISEIELTIHEGKFHQVKR 212
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+ ++ K+ LKRL +G +L +L +G + EL ++K++
Sbjct: 213 MFESVDKKVIYLKRLSMGKLKLDENLALGEYRELTDEEVKMI 254
>gi|419815302|ref|ZP_14339919.1| ribosomal small subunit pseudouridine synthase A, partial
[Streptococcus sp. GMD2S]
gi|404468533|gb|EKA13476.1| ribosomal small subunit pseudouridine synthase A, partial
[Streptococcus sp. GMD2S]
Length = 171
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 24 QLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGPLTSDHIQKFKDGIV 83
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + EG+ H+V+++ + G+K+ +LKR++ G F
Sbjct: 84 FLDGTTCKPAQLEILDISPT--ESHASITISEGKFHQVKKMFLSVGVKVTALKRVQFGDF 141
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L +L G + L +L+++
Sbjct: 142 TLDPELAEGQYRPLNPEELEII 163
>gi|374674313|dbj|BAL52204.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. lactis IO-1]
Length = 280
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+I+TNDG ++ P ++KEY A IDG V + +EG
Sbjct: 131 REDIFPVGRLDKNTEGLLILTNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIVNKFAEG 190
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
T+ G P + + + IR+++HEG+ H+V+ + + + + LKR
Sbjct: 191 LTLKNGEKARPGELFIESIYKGESQSGWISEIRVIIHEGKFHQVKRMFEAVEMYVLYLKR 250
Query: 135 LRIGGFRLPSDLGIGMH 151
+R+G L SDL +G +
Sbjct: 251 IRMGNLALDSDLALGAY 267
>gi|326331280|ref|ZP_08197572.1| ribosomal large subunit pseudouridine synthase B [Nocardioidaceae
bacterium Broad-1]
gi|325950913|gb|EGD42961.1| ribosomal large subunit pseudouridine synthase B [Nocardioidaceae
bacterium Broad-1]
Length = 255
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD T GLII+TNDGDFA ++HPS ++ K Y+A + G + + G
Sbjct: 112 RLFHVGRLDTDTEGLIILTNDGDFAHRLAHPSYEVDKTYVAEVKGEIFPNVRKRLLAGVT 171
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E T ++ + D + I +V+HEGRN VR L+ + G + L R RIG R
Sbjct: 172 LEDGPVTVTKARIMETRKD--KSIIELVIHEGRNRIVRRLLDHLGHPVTRLTRTRIGPVR 229
Query: 142 L 142
L
Sbjct: 230 L 230
>gi|365925302|ref|ZP_09448065.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
mali KCTC 3596 = DSM 20444]
gi|420266475|ref|ZP_14768938.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
mali KCTC 3596 = DSM 20444]
gi|394425244|gb|EJE98240.1| ribosomal small subunit pseudouridine synthase A [Lactobacillus
mali KCTC 3596 = DSM 20444]
Length = 240
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
R LF VGRLD TTGL+++TNDG+ A + P + K Y A I G V ++ + ++
Sbjct: 91 KRKGLFPVGRLDKDTTGLLLLTNDGELAHKLLSPKKHVTKIYRALIAGEVTEKTIQIFAK 150
Query: 79 G-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
G T+ +G P ++++L ++ I + EG+ H+++ + +K+ LKR+++
Sbjct: 151 GITLRDGETTKPAILKILATNSKKKETKVEISITEGKYHQIKRMFGAVSMKVQELKRVQM 210
Query: 138 GGFRLPSDLGIGMHVELKQSDL 159
G +L + +G + EL +L
Sbjct: 211 GNLKLDEKVNLGEYRELTSEEL 232
>gi|422646929|ref|ZP_16710060.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330960474|gb|EGH60734.1| pseudouridine synthase, Rsu [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 408
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKNGVILEDGPARFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|334563855|ref|ZP_08516846.1| hypothetical protein CbovD2_04717 [Corynebacterium bovis DSM 20582]
Length = 331
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HPS ++ K Y+AT+ G V++ + + +G
Sbjct: 188 RLFHVGRLDAATEGLLLLTNDGELANRLMHPSYEISKTYLATVLGEVDRDFITHLKKGVQ 247
Query: 82 IEGTHCTPDVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+E D V+++ D+ + + +++ +HEGR H VR ++K AG + +L R +I
Sbjct: 248 LEDGVAKADYVQIV----DVWQGKSLVKVELHEGRKHIVRRMLKEAGFPVQALVRTKI 301
>gi|442804236|ref|YP_007372385.1| ribosomal large subunit pseudouridine synthase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442740086|gb|AGC67775.1| ribosomal large subunit pseudouridine synthase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 212
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R R++ VGRLD T+GL+++TNDGDFA + HP +++ K Y+ T+ G ++ L + G
Sbjct: 64 RERVYPVGRLDYDTSGLLLLTNDGDFANLLMHPRNEILKVYVVTVKGRPSEEALEKLRTG 123
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I+G P V +L + + ++ I +HEG+N ++R++ + G + LKR+ G
Sbjct: 124 IRIDGYVTAPAFVRVLDEYEN--KTKLEITIHEGKNRQIRKMCEKIGHPVVRLKRIAYGT 181
Query: 140 FRL 142
L
Sbjct: 182 LEL 184
>gi|422641217|ref|ZP_16704641.1| pseudouridine synthase, Rsu, partial [Pseudomonas syringae Cit 7]
gi|330953605|gb|EGH53865.1| pseudouridine synthase, Rsu [Pseudomonas syringae Cit 7]
Length = 343
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 41 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 100
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 101 RLKNGVILEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 159
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 160 VRYGPVFLNSDLPMGRWREMSQYEVDIL 187
>gi|295105527|emb|CBL03071.1| ribosomal large subunit pseudouridine synthase B [Faecalibacterium
prausnitzii SL3/3]
Length = 275
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 83/139 (59%), Gaps = 4/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD + GL+++TNDG FAQAV+HPS + K Y T+ ++ ++ +S G V
Sbjct: 99 RLYPVGRLDKDSEGLLLMTNDGAFAQAVTHPSGGISKLYRVTVQPRADEATILKLSSGVV 158
Query: 82 I-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+ +GT P + ++ +P R + + + EG+N E+R + ++ GL++ LKR G
Sbjct: 159 LDDGTKTMPCAINVVTDEPG--RTVMEMTLKEGKNREIRRMCESVGLEVVRLKRNAEGVV 216
Query: 141 RLPSDLGIGMHVELKQSDL 159
+L L G + EL ++++
Sbjct: 217 KL-GMLKPGTYRELTKAEV 234
>gi|226309632|ref|YP_002769526.1| pseudouridine synthase [Brevibacillus brevis NBRC 100599]
gi|226092580|dbj|BAH41022.1| pseudouridine synthase [Brevibacillus brevis NBRC 100599]
Length = 239
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 26 VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGT 85
VGRLD+ T GL+++TNDG + ++ P K+ KEY A I+G V +RH+ ++G +E
Sbjct: 101 VGRLDIDTEGLLLLTNDGHLSHSLLSPKKKVDKEYFARIEGRVTERHVQEFAKGVELEDF 160
Query: 86 HCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSD 145
P +E++ IR+ + EG+ H+V+ + L + L+R+R+G L
Sbjct: 161 TTLPAKLEIISSGET---SEIRVTIMEGKFHQVKRMFAAFDLHVVYLQRIRMGPLHLDPS 217
Query: 146 LGIGMHVELKQSDLKLM 162
L G + EL + +L ++
Sbjct: 218 LAPGEYRELTEEELHML 234
>gi|330818049|ref|YP_004361754.1| Pseudouridine synthase, Rsu [Burkholderia gladioli BSR3]
gi|327370442|gb|AEA61798.1| Pseudouridine synthase, Rsu [Burkholderia gladioli BSR3]
Length = 238
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 25 TVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEG 84
VGRLD TTGL+++++DG F A + P K+ K Y+A + A++ R L A+ EG ++ G
Sbjct: 98 CVGRLDQDTTGLLLLSDDGQFVHAYTSPKKKVPKTYLAEVKHALDDRQLAALREGVLLHG 157
Query: 85 THCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPS 144
P + + + R + + V EG+ H+V+ +V +G ++ +L R R+GG+ LP+
Sbjct: 158 ---EPKPIAAVAARARELRS-LELTVLEGKYHQVKRMVAASGNRVEALHRERVGGYTLPA 213
Query: 145 DLGIG 149
DL G
Sbjct: 214 DLAPG 218
>gi|38233785|ref|NP_939552.1| pseudouridine synthase [Corynebacterium diphtheriae NCTC 13129]
gi|376248476|ref|YP_005140420.1| putative pseudouridine synthase B [Corynebacterium diphtheriae
HC04]
gi|376251267|ref|YP_005138148.1| putative pseudouridine synthase B [Corynebacterium diphtheriae
HC03]
gi|376257084|ref|YP_005144975.1| putative pseudouridine synthase B [Corynebacterium diphtheriae
VA01]
gi|38200046|emb|CAE49722.1| Putative pseudouridine synthase B [Corynebacterium diphtheriae]
gi|372112771|gb|AEX78830.1| putative pseudouridine synthase B [Corynebacterium diphtheriae
HC03]
gi|372115044|gb|AEX81102.1| putative pseudouridine synthase B [Corynebacterium diphtheriae
HC04]
gi|372119601|gb|AEX83335.1| putative pseudouridine synthase B [Corynebacterium diphtheriae
VA01]
Length = 321
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HP ++ K Y+AT+ G +KR + + +G
Sbjct: 178 RLFHVGRLDAATEGLLLLTNDGELANRLMHPRYEVSKTYLATVLGEADKRLVKQLRDGIE 237
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
++ D+V+++ + IRI +HEGR H VR ++K AG + L R +I
Sbjct: 238 LDDGPAKADLVQIIDTFQG--KSLIRIELHEGRKHIVRRMLKTAGFPVQRLVRTKI 291
>gi|307544267|ref|YP_003896746.1| RNA-binding S4 domain-containing protein [Halomonas elongata DSM
2581]
gi|307216291|emb|CBV41561.1| RNA-binding S4 domain protein [Halomonas elongata DSM 2581]
Length = 287
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R +GRLD+ T+GL++ T DG+ A + HPS+++++EY + G V H+
Sbjct: 95 RLPRLKGERWIAIGRLDINTSGLLLFTTDGELANRLMHPSTQIEREYAVRVMGEVTMDHI 154
Query: 74 IAISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
A+ EG ++ +G DV E + +V+ EGRN EVR L ++ L + L
Sbjct: 155 KAMVEGVMLDDGPARFTDVQEFGGEGINTW---FHVVIMEGRNREVRRLWESQNLTVSRL 211
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDL 159
KR+R G L G VEL Q ++
Sbjct: 212 KRVRYGNIFLDKRAKAGEWVELGQDEI 238
>gi|160945258|ref|ZP_02092484.1| hypothetical protein FAEPRAM212_02777 [Faecalibacterium prausnitzii
M21/2]
gi|158442989|gb|EDP19994.1| pseudouridylate synthase [Faecalibacterium prausnitzii M21/2]
Length = 275
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 83/139 (59%), Gaps = 4/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD + GL+++TNDG FAQAV+HPS + K Y T+ ++ ++ +S G V
Sbjct: 99 RLYPVGRLDKDSEGLLLMTNDGAFAQAVTHPSGGISKLYRVTVQPRADEATILKLSSGVV 158
Query: 82 I-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+ +GT P + ++ +P R + + + EG+N E+R + ++ GL++ LKR G
Sbjct: 159 LDDGTKTMPCAINVVTDEPG--RTVMEMTLKEGKNREIRRMCESVGLEVVRLKRNAEGVV 216
Query: 141 RLPSDLGIGMHVELKQSDL 159
+L L G + EL ++++
Sbjct: 217 KL-GMLKPGTYRELTKAEV 234
>gi|307708856|ref|ZP_07645316.1| conserved hypothetical protein [Streptococcus mitis SK564]
gi|307620192|gb|EFN99308.1| conserved hypothetical protein [Streptococcus mitis SK564]
Length = 241
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A
Sbjct: 88 PDIQSDKLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYRVEVNGLLTLDHIQA 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +E+L P + + I I EG+ H+V+++ + G+K+ SLKR
Sbjct: 148 FQKGIVFLDGTICKPARLEILSASPSLSQASITI--SEGKFHQVKKMFLSVGVKVTSLKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDL 159
G + L +L G + L +L
Sbjct: 206 THFGPWSLDENLQAGDYRPLNSEEL 230
>gi|376284699|ref|YP_005157909.1| putative pseudouridine synthase B [Corynebacterium diphtheriae 31A]
gi|371578214|gb|AEX41882.1| putative pseudouridine synthase B [Corynebacterium diphtheriae 31A]
Length = 321
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HP ++ K Y+AT+ G +KR + + +G
Sbjct: 178 RLFHVGRLDAATEGLLLLTNDGELANRLMHPRYEVSKTYLATVLGEADKRLVKQLRDGIE 237
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ D+V+++ + IRI +HEGR H VR ++K AG + L R +I +
Sbjct: 238 LDDGPAKADLVQIIDTFQG--KSLIRIELHEGRKHIVRRMLKTAGFPVQRLVRTKIHTIQ 295
Query: 142 L 142
L
Sbjct: 296 L 296
>gi|197294800|ref|YP_001799341.1| 16S rRNA pseudouridylate synthase [Candidatus Phytoplasma
australiense]
gi|171854127|emb|CAM12116.1| 16S rRNA pseudouridylate synthase [Candidatus Phytoplasma
australiense]
Length = 243
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 81/134 (60%), Gaps = 14/134 (10%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL++VGRLD TTGLI++TNDG+ Q ++HP + KEY I+ + K+ L + +G +
Sbjct: 95 RLYSVGRLDFNTTGLILITNDGEMTQKLTHPCFGIPKEYHVKINVFLTKKDLSLLLKGVI 154
Query: 82 IEGTHCT-PDVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVKNAGLKLYSLKR---- 134
I+ + + P + +L Q +P+P ++IV+ EG+N ++R++++ G ++ L+R
Sbjct: 155 IDHNYLSIPKEINIL-KQRYLPKPSTWLKIVITEGKNRQIRKMMEALGYQVLKLRRYSYA 213
Query: 135 ------LRIGGFRL 142
L+ G +RL
Sbjct: 214 FLTIEGLKTGAYRL 227
>gi|225851129|ref|YP_002731363.1| RNA pseudouridine synthase family protein [Persephonella marina
EX-H1]
gi|225645852|gb|ACO04038.1| RNA pseudouridine synthase family protein [Persephonella marina
EX-H1]
Length = 180
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS-EGT 80
+LF VGRLD+ T GL+I+T+DG A ++HP +++KEY A + G ++ L EG
Sbjct: 32 KLFPVGRLDIDTEGLLIITDDGQLAHRIAHPKWEIEKEYYAVVKGDISDLDLSRFEKEGI 91
Query: 81 VI--EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
V+ E P + ++ + R I I V EG+ H V+ +++ G + LKR+RIG
Sbjct: 92 VLKKEKYRTKPFKINIISTSEE--RSEIYITVREGKYHIVKRIMEELGHPVLYLKRVRIG 149
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
RL DL G EL +++
Sbjct: 150 PLRLDEDLEEGDFRELTDEEIE 171
>gi|417311876|ref|ZP_12098593.1| hypothetical protein SPAR5_0271 [Streptococcus pneumoniae GA04375]
gi|418226899|ref|ZP_12853520.1| hypothetical protein SPAR135_0277 [Streptococcus pneumoniae
3063-00]
gi|419437249|ref|ZP_13977325.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13499]
gi|327390694|gb|EGE89034.1| hypothetical protein SPAR5_0271 [Streptococcus pneumoniae GA04375]
gi|353884104|gb|EHE63906.1| hypothetical protein SPAR135_0277 [Streptococcus pneumoniae
3063-00]
gi|379541385|gb|EHZ06551.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13499]
Length = 240
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARSKE----------VFPVGRLDIDTHGLLLLTNDGKLAHTLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
A + G + + + +EG ++ C P +EL+ + + +IR+ + EG+ H+++
Sbjct: 134 QAQVKGMMTREDVETFAEGIPLKDFTCQPAKLELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+V G ++ L+RL +G L +LG G L + +L+
Sbjct: 194 MVAYCGKEVMDLQRLTMGTLVLDENLGRGEWRRLTKEELE 233
>gi|335042061|ref|ZP_08535088.1| pseudouridylate synthase-like protein [Methylophaga
aminisulfidivorans MP]
gi|333788675|gb|EGL54557.1| pseudouridylate synthase-like protein [Methylophaga
aminisulfidivorans MP]
Length = 299
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R +VGRLD+ T+GLII+T DG+ A + HPS ++ +EY + G V + + +G +
Sbjct: 101 RWVSVGRLDLNTSGLIILTTDGELANRLMHPSHEMDREYAVRVLGEVTSEMMQTLRDGVM 160
Query: 82 IE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+E G D+ E + +V+ EGRN EVR L ++ G+++ L R+R G
Sbjct: 161 LEDGEAKFADIQE---SGGEGANKWYHVVIQEGRNREVRRLWESQGVQVSRLMRVRYGPI 217
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
+P++L +G +L+ SDL +
Sbjct: 218 IIPNNLRMGHWTKLEGSDLDYL 239
>gi|49184399|ref|YP_027651.1| RNA pseudouridine [Bacillus anthracis str. Sterne]
gi|165872651|ref|ZP_02217281.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0488]
gi|167634452|ref|ZP_02392773.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0442]
gi|167641611|ref|ZP_02399857.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0193]
gi|170689224|ref|ZP_02880420.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0465]
gi|170706366|ref|ZP_02896827.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0389]
gi|177651473|ref|ZP_02934262.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0174]
gi|190568102|ref|ZP_03021012.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. Tsiankovskii-I]
gi|227815681|ref|YP_002815690.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. CDC 684]
gi|229602768|ref|YP_002865978.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0248]
gi|254682364|ref|ZP_05146225.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. CNEVA-9066]
gi|254733779|ref|ZP_05191493.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. Western North America USA6153]
gi|254740530|ref|ZP_05198221.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. Kruger B]
gi|254753919|ref|ZP_05205954.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. Vollum]
gi|254759015|ref|ZP_05211042.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. Australia 94]
gi|270000599|ref|YP_003329038.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. Ames]
gi|291612213|ref|YP_003541027.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. 'Ames Ancestor']
gi|386735275|ref|YP_006208456.1| Ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. H9401]
gi|421507253|ref|ZP_15954174.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. UR-1]
gi|421638581|ref|ZP_16079176.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. BF1]
gi|49178326|gb|AAT53702.1| RNA pseudouridine [Bacillus anthracis str. Sterne]
gi|164711595|gb|EDR17142.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0488]
gi|167510404|gb|EDR85804.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0193]
gi|167530340|gb|EDR93066.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0442]
gi|170128900|gb|EDS97766.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0389]
gi|170666779|gb|EDT17546.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0465]
gi|172082751|gb|EDT67814.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0174]
gi|190560836|gb|EDV14811.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. Tsiankovskii-I]
gi|224552864|gb|ACN55073.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. 'Ames Ancestor']
gi|227004794|gb|ACP14537.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. CDC 684]
gi|229267176|gb|ACQ48813.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A0248]
gi|269850258|gb|ACZ49988.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. Ames]
gi|384385127|gb|AFH82788.1| Ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. H9401]
gi|401822905|gb|EJT22054.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. UR-1]
gi|403394108|gb|EJY91349.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. BF1]
Length = 242
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERGVT 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V+++ +++ +HEGRN +VR + + K+ LKR L
Sbjct: 154 LEDGKTAPARVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|65318840|ref|ZP_00391799.1| COG1187: 16S rRNA uridine-516 pseudouridylate synthase and related
pseudouridylate synthases [Bacillus anthracis str.
A2012]
Length = 242
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERGVT 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V+++ +++ +HEGRN +VR + + K+ LKR L
Sbjct: 154 LEDGKTAPARVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|150015235|ref|YP_001307489.1| pseudouridine synthase [Clostridium beijerinckii NCIMB 8052]
gi|149901700|gb|ABR32533.1| pseudouridine synthase [Clostridium beijerinckii NCIMB 8052]
Length = 238
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F +GRLD T GL+++TNDG+ + P + K Y A ID +V+++ + A +G T+
Sbjct: 98 FPIGRLDKDTVGLLLLTNDGELNHRLISPKWHVDKVYYAEIDKSVDEKDIKAFKDGITLD 157
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C +E+L D IR+ + EG+ H+V+ + + G K+ LKR GG L
Sbjct: 158 DGYKCLEANLEILSSSND--GSEIRLTIQEGKFHQVKRMFEAVGKKVTYLKREEFGGLLL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
DL G + EL +L L+
Sbjct: 216 DPDLEEGEYRELTDEELSLL 235
>gi|255656021|ref|ZP_05401430.1| putative 23S RNA and tRNA pseudouridine synthase [Clostridium
difficile QCD-23m63]
gi|296450550|ref|ZP_06892304.1| ribosomal large subunit pseudouridine synthase B [Clostridium
difficile NAP08]
gi|296879328|ref|ZP_06903323.1| ribosomal large subunit pseudouridine synthase B [Clostridium
difficile NAP07]
gi|296260625|gb|EFH07466.1| ribosomal large subunit pseudouridine synthase B [Clostridium
difficile NAP08]
gi|296429871|gb|EFH15723.1| ribosomal large subunit pseudouridine synthase B [Clostridium
difficile NAP07]
Length = 238
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ +GRLD T+GL+I+TNDGD ++HP ++ K Y+A++ G ++ + G
Sbjct: 93 KERVYPIGRLDYETSGLLILTNDGDLTYKLTHPKHEIDKTYVASVKGIISGDEIRKFETG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IE P +++ + I +HEGRN +VR++ K + +L+R+ +G
Sbjct: 153 LKIEDYTTAPAKIKVTKENKEKNYSVCEITIHEGRNRQVRKMCKAINHPVLNLRRISVGK 212
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L D +G + L + ++K +
Sbjct: 213 IVL-KDTKVGEYRYLTEDEIKYL 234
>gi|30019620|ref|NP_831251.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
ATCC 14579]
gi|49477247|ref|YP_035689.1| pseudouridylate synthase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118477028|ref|YP_894179.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis str. Al Hakam]
gi|196036830|ref|ZP_03104219.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
W]
gi|196039034|ref|ZP_03106341.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
NVH0597-99]
gi|196047636|ref|ZP_03114843.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
03BB108]
gi|206968047|ref|ZP_03229003.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
AH1134]
gi|218232708|ref|YP_002366253.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
B4264]
gi|218902682|ref|YP_002450516.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
AH820]
gi|225863435|ref|YP_002748813.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
03BB102]
gi|228914146|ref|ZP_04077764.1| Pseudouridine synthase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228920281|ref|ZP_04083629.1| Pseudouridine synthase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228926603|ref|ZP_04089672.1| Pseudouridine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228932858|ref|ZP_04095725.1| Pseudouridine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228945172|ref|ZP_04107528.1| Pseudouridine synthase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228951948|ref|ZP_04114046.1| Pseudouridine synthase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228957847|ref|ZP_04119587.1| Pseudouridine synthase [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|229043313|ref|ZP_04191033.1| Pseudouridine synthase [Bacillus cereus AH676]
gi|229069124|ref|ZP_04202416.1| Pseudouridine synthase [Bacillus cereus F65185]
gi|229078754|ref|ZP_04211308.1| Pseudouridine synthase [Bacillus cereus Rock4-2]
gi|229090533|ref|ZP_04221769.1| Pseudouridine synthase [Bacillus cereus Rock3-42]
gi|229109026|ref|ZP_04238627.1| Pseudouridine synthase [Bacillus cereus Rock1-15]
gi|229121114|ref|ZP_04250351.1| Pseudouridine synthase [Bacillus cereus 95/8201]
gi|229126886|ref|ZP_04255898.1| Pseudouridine synthase [Bacillus cereus BDRD-Cer4]
gi|229144171|ref|ZP_04272585.1| Pseudouridine synthase [Bacillus cereus BDRD-ST24]
gi|229149770|ref|ZP_04278000.1| Pseudouridine synthase [Bacillus cereus m1550]
gi|229177979|ref|ZP_04305351.1| Pseudouridine synthase [Bacillus cereus 172560W]
gi|229183767|ref|ZP_04310984.1| Pseudouridine synthase [Bacillus cereus BGSC 6E1]
gi|229189653|ref|ZP_04316668.1| Pseudouridine synthase [Bacillus cereus ATCC 10876]
gi|254721252|ref|ZP_05183042.1| ribosomal large subunit pseudouridine synthase B [Bacillus
anthracis str. A1055]
gi|296502142|ref|YP_003663842.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis BMB171]
gi|365162266|ref|ZP_09358397.1| ribosomal large subunit pseudouridine synthase B [Bacillus sp.
7_6_55CFAA_CT2]
gi|376265413|ref|YP_005118125.1| Ribosomal large subunit pseudouridine synthase B [Bacillus cereus
F837/76]
gi|423414741|ref|ZP_17391861.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG3O-2]
gi|423423647|ref|ZP_17400678.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG3X2-2]
gi|423429477|ref|ZP_17406481.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG4O-1]
gi|423435058|ref|ZP_17412039.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG4X12-1]
gi|423504837|ref|ZP_17481428.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HD73]
gi|423552694|ref|ZP_17529021.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
ISP3191]
gi|423579764|ref|ZP_17555875.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD014]
gi|423588046|ref|ZP_17564133.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD045]
gi|423629568|ref|ZP_17605316.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD154]
gi|423637777|ref|ZP_17613430.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD156]
gi|423643384|ref|ZP_17619002.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD166]
gi|423654352|ref|ZP_17629651.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD200]
gi|449088359|ref|YP_007420800.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|29895164|gb|AAP08452.1| Ribosomal large subunit pseudouridine synthase B [Bacillus cereus
ATCC 14579]
gi|49328803|gb|AAT59449.1| pseudouridylate synthase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118416253|gb|ABK84672.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis str. Al Hakam]
gi|195990559|gb|EDX54538.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
W]
gi|196021550|gb|EDX60250.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
03BB108]
gi|196030179|gb|EDX68779.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
NVH0597-99]
gi|206736967|gb|EDZ54114.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
AH1134]
gi|218160665|gb|ACK60657.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
B4264]
gi|218539452|gb|ACK91850.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
AH820]
gi|225790880|gb|ACO31097.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
03BB102]
gi|228593917|gb|EEK51721.1| Pseudouridine synthase [Bacillus cereus ATCC 10876]
gi|228599616|gb|EEK57219.1| Pseudouridine synthase [Bacillus cereus BGSC 6E1]
gi|228605467|gb|EEK62916.1| Pseudouridine synthase [Bacillus cereus 172560W]
gi|228633801|gb|EEK90400.1| Pseudouridine synthase [Bacillus cereus m1550]
gi|228639179|gb|EEK95595.1| Pseudouridine synthase [Bacillus cereus BDRD-ST24]
gi|228656826|gb|EEL12652.1| Pseudouridine synthase [Bacillus cereus BDRD-Cer4]
gi|228662233|gb|EEL17836.1| Pseudouridine synthase [Bacillus cereus 95/8201]
gi|228674495|gb|EEL29738.1| Pseudouridine synthase [Bacillus cereus Rock1-15]
gi|228692800|gb|EEL46523.1| Pseudouridine synthase [Bacillus cereus Rock3-42]
gi|228704627|gb|EEL57059.1| Pseudouridine synthase [Bacillus cereus Rock4-2]
gi|228714069|gb|EEL65952.1| Pseudouridine synthase [Bacillus cereus F65185]
gi|228726027|gb|EEL77264.1| Pseudouridine synthase [Bacillus cereus AH676]
gi|228801763|gb|EEM48640.1| Pseudouridine synthase [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228807871|gb|EEM54392.1| Pseudouridine synthase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228814407|gb|EEM60672.1| Pseudouridine synthase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228826779|gb|EEM72546.1| Pseudouridine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832979|gb|EEM78547.1| Pseudouridine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228839480|gb|EEM84773.1| Pseudouridine synthase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228845479|gb|EEM90512.1| Pseudouridine synthase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|296323194|gb|ADH06122.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis BMB171]
gi|363618828|gb|EHL70167.1| ribosomal large subunit pseudouridine synthase B [Bacillus sp.
7_6_55CFAA_CT2]
gi|364511213|gb|AEW54612.1| Ribosomal large subunit pseudouridine synthase B [Bacillus cereus
F837/76]
gi|401097661|gb|EJQ05683.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG3O-2]
gi|401115337|gb|EJQ23190.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG3X2-2]
gi|401121783|gb|EJQ29572.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG4O-1]
gi|401125296|gb|EJQ33056.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG4X12-1]
gi|401186636|gb|EJQ93724.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
ISP3191]
gi|401217219|gb|EJR23913.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD014]
gi|401227783|gb|EJR34312.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD045]
gi|401267435|gb|EJR73495.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD154]
gi|401273038|gb|EJR79026.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD156]
gi|401275388|gb|EJR81355.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD166]
gi|401295863|gb|EJS01486.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD200]
gi|402455359|gb|EJV87142.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HD73]
gi|449022116|gb|AGE77279.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
Length = 242
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERGVT 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V+++ +++ +HEGRN +VR + + K+ LKR L
Sbjct: 154 LEDGKTAPARVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|15674222|ref|NP_268397.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. lactis Il1403]
gi|12725309|gb|AAK06338.1|AE006453_2 ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. lactis Il1403]
Length = 273
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+I+TNDG ++ P ++KEY A IDG V + +EG
Sbjct: 124 REDIFPVGRLDKNTEGLLILTNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIVNKFAEG 183
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
T+ G P + + + IR+++HEG+ H+V+ + + + + LKR
Sbjct: 184 LTLKNGEKARPGELFIENIYEGESQSGWISEIRVIIHEGKFHQVKRMFEAVEMYVLYLKR 243
Query: 135 LRIGGFRLPSDLGIGMH 151
+R+G L SDL +G +
Sbjct: 244 IRMGNLALDSDLALGAY 260
>gi|404401876|ref|ZP_10993460.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
fuscovaginae UPB0736]
Length = 404
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKDGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G V+E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKAGVVLEDGPAKFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMSQYEVDVL 253
>gi|438119798|ref|ZP_20871832.1| ribosomal large subunit pseudouridine synthase B [Spiroplasma
melliferum IPMB4A]
gi|434155319|gb|ELL44278.1| ribosomal large subunit pseudouridine synthase B [Spiroplasma
melliferum IPMB4A]
Length = 247
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 81/142 (57%), Gaps = 1/142 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+F ++HPS + K Y + G ++K+ L ++ G
Sbjct: 96 RIYPVGRLDYDTSGLLLLTNDGEFTNIITHPSHIINKTYHVLVSGYLSKQQLQQLATGIE 155
Query: 82 IE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
IE G + +L+ + + + +HEGR H+V+++++ G ++ LKR+ IG
Sbjct: 156 IEPGIITSQAQAKLVKYEEAKNVSILLLTIHEGRKHQVKKMIQALGHEVIKLKRIAIGFL 215
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
+L L G LK ++KL
Sbjct: 216 QLDETLKPGEWRYLKPKEIKLF 237
>gi|372268634|ref|ZP_09504682.1| RNA pseudouridylate synthase family protein [Alteromonas sp. S89]
Length = 289
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R +VGRLD T+GL++ TN G+ A + HPSS + +EY+ I G V+
Sbjct: 97 RLPRLKSGRWISVGRLDFNTSGLLLFTNSGELANKLMHPSSVIDREYLVRIQGDVDDDMK 156
Query: 74 IAISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+++G ++ +G D+VE + VV EGRN EVR L ++ G+++ L
Sbjct: 157 KRLTKGVLLDDGQARFTDIVE---SGGEGTNRWFYCVVMEGRNREVRRLWESQGVRVSRL 213
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDL 159
KR+R G +PS + +G +E++ ++
Sbjct: 214 KRVRYGSVFIPSHVRVGQWIEMEPKEI 240
>gi|422416817|ref|ZP_16493774.1| RNA pseudouridine synthase family protein [Listeria innocua FSL
J1-023]
gi|313622662|gb|EFR93029.1| RNA pseudouridine synthase family protein [Listeria innocua FSL
J1-023]
Length = 233
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A S G T+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTAEDVEAFSAGVTLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I++ + EG+ H+++ + G + LKR+ +G +L
Sbjct: 157 DGYTCKPAHLEIITPN------EIKVTIQEGKFHQIKRMFAARGKTVSYLKRISMGNLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DESLELGEYRPLTENELLILQNK 233
>gi|385260776|ref|ZP_10038918.1| pseudouridylate synthase [Streptococcus sp. SK140]
gi|385190788|gb|EIF38223.1| pseudouridylate synthase [Streptococcus sp. SK140]
Length = 240
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 18 LPRPR-LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
L R + +F VGRLD+ T GL+++TNDG A A+ P + K Y+A +DG + +
Sbjct: 90 LARSKEVFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTYLAQVDGTMTDEDIETF 149
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
++G ++ C P +EL+ + + +R+ + EG+ H+V+ +V G ++ L+RL
Sbjct: 150 AQGIPLKDFTCQPAKLELVSLDREKNQSLVRVTIAEGKFHQVKRMVAYCGKEVVDLQRLT 209
Query: 137 IGGFRLPSDLGIG 149
+G L +L G
Sbjct: 210 MGTLTLDENLKRG 222
>gi|419441716|ref|ZP_13981751.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13224]
gi|379555212|gb|EHZ20281.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA13224]
Length = 240
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++E++ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILEIVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|262067505|ref|ZP_06027117.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium
periodonticum ATCC 33693]
gi|291378768|gb|EFE86286.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium
periodonticum ATCC 33693]
Length = 234
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R+F +GRLD T+GLI++TNDG+ + HP S++ K+Y + G V K + + +G
Sbjct: 93 KRIFPIGRLDYMTSGLILLTNDGELFNRLVHPKSEIYKKYYIKVFGEVKKEEIDELKKGV 152
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++E P ++ + D + + I + EGRN ++R +++ G K+ L+R +IG
Sbjct: 153 LLEDGKTLP--AKVAGIKYDKNKTSMYISIREGRNRQIRRMIEKFGYKVLMLRREKIGEL 210
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + EL + +++ +
Sbjct: 211 SL-GDLKEGKYRELTKEEIEYL 231
>gi|281492918|ref|YP_003354898.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. lactis KF147]
gi|281376570|gb|ADA66056.1| Ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. lactis KF147]
Length = 273
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+I+TNDG ++ P ++KEY A IDG V + +EG
Sbjct: 124 REDIFPVGRLDKNTEGLLILTNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIVNKFAEG 183
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
T+ G P + + + IR+++HEG+ H+V+ + + + + LKR
Sbjct: 184 LTLKNGEKARPGELFIENIYKGESQSGWISEIRVIIHEGKFHQVKRMFEAVEMYVLYLKR 243
Query: 135 LRIGGFRLPSDLGIGMH 151
+R+G L SDL +G +
Sbjct: 244 IRMGNLALDSDLALGAY 260
>gi|423682796|ref|ZP_17657635.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
gi|383439570|gb|EID47345.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
Length = 244
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD T+GL+++TNDGDFA + HP ++ K Y+A + G K +L + G
Sbjct: 94 RIYPIGRLDYDTSGLLLLTNDGDFANKLMHPKYEINKTYVAKLKGIPLKENLKKLERGVR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+E P V+LL ++I +HEGRN +VR + + G ++ LKR
Sbjct: 154 LEDGKTAPAKVKLLSLDKKKQTSIVQITIHEGRNRQVRRMFEAIGHEVLKLKR 206
>gi|359403728|ref|ZP_09196632.1| pseudouridylate synthase [Spiroplasma melliferum KC3]
gi|358832959|gb|EHK52063.1| pseudouridylate synthase [Spiroplasma melliferum KC3]
Length = 247
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 81/142 (57%), Gaps = 1/142 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+F ++HPS + K Y + G ++K+ L ++ G
Sbjct: 96 RIYPVGRLDYDTSGLLLLTNDGEFTNIITHPSHIINKTYHVLVSGYLSKQQLQQLATGIE 155
Query: 82 IE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
IE G + +L+ + + + +HEGR H+V+++++ G ++ LKR+ IG
Sbjct: 156 IEPGIITSQAQAKLVKYEEAKNVSILLLTIHEGRKHQVKKMIQALGHEVIKLKRIAIGFL 215
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
+L L G LK ++KL
Sbjct: 216 QLDETLKPGEWRYLKPKEIKLF 237
>gi|397687520|ref|YP_006524839.1| pseudouridine synthase [Pseudomonas stutzeri DSM 10701]
gi|395809076|gb|AFN78481.1| pseudouridine synthase [Pseudomonas stutzeri DSM 10701]
Length = 370
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 105 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 164
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 165 RLKTGVMLEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 223
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G + SDL +G E+ Q+++ ++
Sbjct: 224 VRFGPVFMTSDLPMGRWREMSQTEVDIL 251
>gi|163119522|ref|YP_079621.2| pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319645211|ref|ZP_07999444.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|404489713|ref|YP_006713819.1| ribosomal large subunit pseudouridine synthase RluB [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|52348703|gb|AAU41337.1| ribosomal large subunit pseudouridine synthase RluB [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|145903029|gb|AAU23983.2| pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317393020|gb|EFV73814.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
Length = 244
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD T+GL+++TNDGDFA + HP ++ K Y+A + G K +L + G
Sbjct: 94 RIYPIGRLDYDTSGLLLLTNDGDFANKLMHPKYEINKTYVAKLKGIPLKENLKKLERGVR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+E P V+LL ++I +HEGRN +VR + + G ++ LKR
Sbjct: 154 LEDGKTAPAKVKLLSLDKKKQTSIVQITIHEGRNRQVRRMFEAIGHEVLKLKR 206
>gi|423481458|ref|ZP_17458148.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG6X1-2]
gi|401144666|gb|EJQ52193.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG6X1-2]
Length = 242
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDG+FA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGEFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P V+++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPANVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|333907246|ref|YP_004480832.1| pseudouridine synthase Rsu [Marinomonas posidonica IVIA-Po-181]
gi|333477252|gb|AEF53913.1| pseudouridine synthase Rsu [Marinomonas posidonica IVIA-Po-181]
Length = 298
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R VGRLD+ T+GL++ T DG+ A + HPS+++ +EY+ + G V +L +
Sbjct: 93 PKLRGERWIAVGRLDINTSGLLLFTTDGELANRLMHPSTEIDREYLVRVMGEVTDENLDS 152
Query: 76 ISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ +G +E G D+V+ + + + EGRN EVR L ++ G+K+ LKR
Sbjct: 153 LKKGVNLEDGPAKFTDIVD---GGGEGINHWFYVCLMEGRNREVRRLWESQGVKVNRLKR 209
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G LPS +G VE++ ++ +
Sbjct: 210 VRFGPVFLPSKAKVGRWVEMEGDEVNAL 237
>gi|253681692|ref|ZP_04862489.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum D str. 1873]
gi|416355928|ref|ZP_11681900.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum C str. Stockholm]
gi|253561404|gb|EES90856.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum D str. 1873]
gi|338195124|gb|EGO87451.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum C str. Stockholm]
Length = 236
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F +GRLD T+GLII+TNDGD + HP ++ K YIA I G + + G
Sbjct: 96 RIFPIGRLDYNTSGLIILTNDGDVYNKIIHPREEIDKVYIAVIKGVPSNDEIKNFCNGVD 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I G + E++ D + +++IV+HEG+N +VR + + G + +LKR+ +G
Sbjct: 156 IGGYVTSKANFEIIEKLDD--KCKVKIVIHEGKNRQVRRMCEKIGHPVIALKRVSVGKIS 213
Query: 142 LPS 144
L +
Sbjct: 214 LST 216
>gi|229074764|ref|ZP_04207783.1| Pseudouridine synthase [Bacillus cereus Rock4-18]
gi|229096063|ref|ZP_04227037.1| Pseudouridine synthase [Bacillus cereus Rock3-29]
gi|229102175|ref|ZP_04232885.1| Pseudouridine synthase [Bacillus cereus Rock3-28]
gi|229115019|ref|ZP_04244430.1| Pseudouridine synthase [Bacillus cereus Rock1-3]
gi|407703943|ref|YP_006827528.1| hypothetical protein MC28_0707 [Bacillus thuringiensis MC28]
gi|423380623|ref|ZP_17357907.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG1O-2]
gi|423443655|ref|ZP_17420561.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG4X2-1]
gi|423446091|ref|ZP_17422970.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG5O-1]
gi|423466746|ref|ZP_17443514.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG6O-1]
gi|423536143|ref|ZP_17512561.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuB2-9]
gi|423538613|ref|ZP_17515004.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuB4-10]
gi|423544851|ref|ZP_17521209.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuB5-5]
gi|423618281|ref|ZP_17594115.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD115]
gi|423625443|ref|ZP_17601221.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD148]
gi|228668435|gb|EEL23866.1| Pseudouridine synthase [Bacillus cereus Rock1-3]
gi|228681245|gb|EEL35412.1| Pseudouridine synthase [Bacillus cereus Rock3-28]
gi|228687355|gb|EEL41259.1| Pseudouridine synthase [Bacillus cereus Rock3-29]
gi|228708362|gb|EEL60516.1| Pseudouridine synthase [Bacillus cereus Rock4-18]
gi|401133184|gb|EJQ40817.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG5O-1]
gi|401177197|gb|EJQ84389.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuB4-10]
gi|401183026|gb|EJQ90143.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuB5-5]
gi|401254012|gb|EJR60248.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD115]
gi|401255123|gb|EJR61348.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD148]
gi|401631375|gb|EJS49172.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG1O-2]
gi|402412741|gb|EJV45094.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG4X2-1]
gi|402415456|gb|EJV47780.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG6O-1]
gi|402461568|gb|EJV93281.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuB2-9]
gi|407381628|gb|AFU12129.1| Pseudouridine synthase [Bacillus thuringiensis MC28]
Length = 242
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERGVT 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V+++ +++ +HEGRN +VR + + K+ LKR L
Sbjct: 154 LEDGKTAPANVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|384515568|ref|YP_005710660.1| hypothetical protein CULC809_01033 [Corynebacterium ulcerans 809]
gi|334696769|gb|AEG81566.1| hypothetical protein CULC809_01033 [Corynebacterium ulcerans 809]
Length = 373
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HP ++ K Y+AT+ G +KR + + +G
Sbjct: 230 RLFHVGRLDAATEGLLLLTNDGELANRLMHPKYEVAKTYLATVLGEADKRLVKQLRDGIE 289
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
++ D V+++ + IRI +HEGR H VR ++K AG + L R +I
Sbjct: 290 LDDGPAKADFVQIVDTHQG--KSLIRIELHEGRKHIVRRMLKTAGFPVERLVRTKI 343
>gi|326791357|ref|YP_004309178.1| pseudouridine synthase Rsu [Clostridium lentocellum DSM 5427]
gi|326542121|gb|ADZ83980.1| pseudouridine synthase Rsu [Clostridium lentocellum DSM 5427]
Length = 240
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 80/140 (57%), Gaps = 3/140 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F VGRLD T+GL+++T+DG ++HP + K Y + G V +R L + +G
Sbjct: 92 KTRIFPVGRLDYNTSGLLLLTSDGALTYGLTHPKHHVNKTYEVKLSGKVTERSLDMLRKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+I+ P VE++ + + ++I +HEGRN ++R++ + G + LKRL +G
Sbjct: 152 VMIDHRKTYPAEVEVV--KQNAKHTWLKITIHEGRNRQIRKMCEAVGYPVVQLKRLSVGS 209
Query: 140 FRLPSDLGIGMHVELKQSDL 159
+L S L +G + L + ++
Sbjct: 210 IQLGS-LKVGEYRALTKEEV 228
>gi|187933805|ref|YP_001885871.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum B str. Eklund 17B]
gi|187721958|gb|ACD23179.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum B str. Eklund 17B]
Length = 236
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R++ +GRLD ++GLI++TNDGD + HP +L K+YIA + G V+K+ + ++G
Sbjct: 95 ERIYPIGRLDYDSSGLILLTNDGDVYNKIIHPREELNKKYIAVVKGKVSKKDIDIFNKGI 154
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I G P +E+L + + + + +HEG+N ++R++ ++ SL R+ IG
Sbjct: 155 DIGGYITAPASLEVLSYANE--KSTVEVCIHEGKNRQIRKMCTAINHEVLSLNRVSIGEI 212
Query: 141 RL 142
+L
Sbjct: 213 QL 214
>gi|170722948|ref|YP_001750636.1| RNA-binding S4 domain-containing protein [Pseudomonas putida W619]
gi|169760951|gb|ACA74267.1| RNA-binding S4 domain protein [Pseudomonas putida W619]
Length = 354
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ G+ + LKR
Sbjct: 167 RLKAGVMLEDGPAKFTDIQKAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGMVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMTQGEIDIL 253
>gi|406040206|ref|ZP_11047561.1| ribosomal large subunit pseudouridine synthase B (pseudouridylate
synthase) (Uracil hydrolyase) [Acinetobacter ursingii
DSM 16037 = CIP 107286]
Length = 309
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + R VGRLD+ +TGL++ TNDG+ A + HPS+++++EY + G V +
Sbjct: 94 PQIANDRWVMVGRLDINSTGLLLFTNDGELANRLMHPSNEVEREYAVRVMGEVTPQIRQT 153
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ G V++ + L D ++VV EGRN EVR L ++ GLK+ L R
Sbjct: 154 LLNGVVLDDGPAKFESFSELG--GDGINRWYQVVVKEGRNREVRRLFESQGLKVSRLLRT 211
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
R G LP +L G +EL ++D+
Sbjct: 212 RYGTVILPRELRTGRWMELDKADI 235
>gi|386287702|ref|ZP_10064873.1| pseudouridine synthase Rsu [gamma proteobacterium BDW918]
gi|385279212|gb|EIF43153.1| pseudouridine synthase Rsu [gamma proteobacterium BDW918]
Length = 262
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R +VGRLD TTGL++ T DGD A + HPS+ +++EY+ + G+ +
Sbjct: 94 RLPRLQGERWISVGRLDFNTTGLLLFTTDGDLANKLMHPSTTIEREYLCRVMGSATPAMM 153
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ +G +E G D+ + + +V+ EGRN EVR L ++ GL++ L
Sbjct: 154 QQLRDGVQLEDGLAKFADIAD---GGGEGFNHWYYVVIMEGRNREVRRLWESQGLQVNRL 210
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDL 159
KR+R G +PS + +G EL ++
Sbjct: 211 KRVRYGSVFIPSKVKVGQWTELSDPEI 237
>gi|47096040|ref|ZP_00233642.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes str. 1/2a F6854]
gi|254826833|ref|ZP_05231520.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL N3-165]
gi|254914018|ref|ZP_05264030.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes J2818]
gi|254938333|ref|ZP_05270030.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes F6900]
gi|386048006|ref|YP_005966338.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes J0161]
gi|47015637|gb|EAL06568.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes serotype 1/2a str. F6854]
gi|258599211|gb|EEW12536.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL N3-165]
gi|258610945|gb|EEW23553.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes F6900]
gi|293592036|gb|EFG00371.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes J2818]
gi|345534997|gb|AEO04438.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes J0161]
Length = 233
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI- 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A + G +
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTAADVEAFAAGIELD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I++ + EG+ H+V+ + G + LKR+ +G +L
Sbjct: 157 DGYTCKPARLEIITPN------EIKVTIQEGKFHQVKRMFAARGKSVSYLKRISMGNLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DESLALGEYRPLTEAELAILQNK 233
>gi|116333418|ref|YP_794945.1| 16S rRNA uridine-516 pseudouridylate synthase related enzyme
[Lactobacillus brevis ATCC 367]
gi|116098765|gb|ABJ63914.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
brevis ATCC 367]
Length = 240
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+ A ++HP +++K YIA + G + + +G
Sbjct: 94 RVYPVGRLDYDTSGLLLLTNDGELANRLTHPRYEVEKTYIARVTGVPTNDAMKQLRQGIT 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G P ++L D I + +HEG+NH+V++++ G + LKR + G
Sbjct: 154 VDGETYAPAKSKVLSAADDRKTAIISLTIHEGKNHQVKKMLAAVGCPVEKLKREQYGFLT 213
Query: 142 LPSDLGIGMHVELKQSDLK 160
L L G +LK ++K
Sbjct: 214 LKG-LNAGEARQLKPEEVK 231
>gi|398844888|ref|ZP_10601939.1| pseudouridine synthase family protein [Pseudomonas sp. GM84]
gi|398254096|gb|EJN39202.1| pseudouridine synthase family protein [Pseudomonas sp. GM84]
Length = 356
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ G+ + LKR
Sbjct: 167 RLKAGVMLEDGPAKFTDIQKAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGMVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMSQGEIDIL 253
>gi|229160522|ref|ZP_04288517.1| Pseudouridine synthase [Bacillus cereus R309803]
gi|228622932|gb|EEK79763.1| Pseudouridine synthase [Bacillus cereus R309803]
Length = 242
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A + G + + + G
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANVLMHPKYKVEKTYVAKVKGPLTGEKIRMLERGVA 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V+++ +++ +HEGRN +VR + + K+ LKR L
Sbjct: 154 LEDGKTAPARVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|261408369|ref|YP_003244610.1| pseudouridine synthase [Paenibacillus sp. Y412MC10]
gi|261284832|gb|ACX66803.1| pseudouridine synthase [Paenibacillus sp. Y412MC10]
Length = 253
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 4/144 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG A + P + K Y AT++G V++ + + G ++
Sbjct: 105 FPVGRLDKDTEGLLLLTNDGKLAHELLSPRKHIPKTYEATVEGRVDEEDVRRFAAGVTLD 164
Query: 84 GTHCT-PDVVELLPPQP---DIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ T P + + + + RI + +HEG+ H+V+ + + G K+ LKR+ +G
Sbjct: 165 DGYVTLPGELAIHSHEEREDGVQLSRISLTIHEGKFHQVKRMFEAVGKKVVYLKRISMGE 224
Query: 140 FRLPSDLGIGMHVELKQSDLKLMG 163
RL +L IG + EL + +L L+G
Sbjct: 225 LRLDENLEIGTYRELTEQELALIG 248
>gi|406577615|ref|ZP_11053216.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD6S]
gi|419818625|ref|ZP_14342595.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD4S]
gi|404459715|gb|EKA06040.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD6S]
gi|404461566|gb|EKA07467.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
GMD4S]
Length = 241
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ +GRLD TTGL+++T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 QLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKSYQVVVNGPLTSDHIQKFKDGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + EG+ H+V+++ + G+K+ +LKR++ G F
Sbjct: 154 FLDGTTCKPAQLEILDISP--TESHASITISEGKFHQVKKMFLSVGVKVTALKRVQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L +L G + L +L+++
Sbjct: 212 TLDPELAEGQYRPLNPEELEII 233
>gi|337290656|ref|YP_004629677.1| hypothetical protein CULC22_01048 [Corynebacterium ulcerans
BR-AD22]
gi|334698962|gb|AEG83758.1| hypothetical protein CULC22_01048 [Corynebacterium ulcerans
BR-AD22]
Length = 373
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HP ++ K Y+AT+ G +KR + + +G
Sbjct: 230 RLFHVGRLDAATEGLLLLTNDGELANRLMHPKYEVAKTYLATVLGEADKRLVKQLRDGIE 289
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
++ D V+++ + IRI +HEGR H VR ++K AG + L R +I
Sbjct: 290 LDDGPAKADFVQIVDTHQG--KSLIRIELHEGRKHIVRRMLKTAGFPVERLVRTKI 343
>gi|389844713|ref|YP_006346793.1| pseudouridine synthase family protein [Mesotoga prima MesG1.Ag.4.2]
gi|387859459|gb|AFK07550.1| pseudouridine synthase family protein [Mesotoga prima MesG1.Ag.4.2]
Length = 228
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F VGRLD + GLI++TNDGD + VSHP+S+++K Y+ I G + R L A+ G
Sbjct: 67 KERVFHVGRLDQDSCGLILMTNDGDLSNLVSHPASEIEKTYVVGIKGKLTDRDLEAVKGG 126
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
T+ +G +P + L+ D + I +HEG E+RE+ + + SL R+ IG
Sbjct: 127 LTLGDGFKTSPAKIRLVRSDGDF--SKYAITIHEGHKREIREIFRVLNKSVSSLVRVSIG 184
>gi|225378037|ref|ZP_03755258.1| hypothetical protein ROSEINA2194_03697 [Roseburia inulinivorans DSM
16841]
gi|225210038|gb|EEG92392.1| hypothetical protein ROSEINA2194_03697 [Roseburia inulinivorans DSM
16841]
Length = 261
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD+ T GL+++TNDG A + P+ ++K Y A IDG V ++ + + G
Sbjct: 116 RSDLFPVGRLDIDTEGLLLITNDGALAHDLLSPAKHVEKTYYAVIDGVVTEKDVNSFENG 175
Query: 80 TVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I E P + +L +P+ I + + EGR H+V+ + + G K+ LKR+ +G
Sbjct: 176 VDIGEEKLTKPGKLRILKSEPE---SEIELTITEGRFHQVKRMFEAVGKKVLYLKRISMG 232
Query: 139 GFRLPSDLGIGMHVELKQSDL 159
+L DL G + L + ++
Sbjct: 233 PLQLTDDLKPGEYRPLTEEEI 253
>gi|423524625|ref|ZP_17501098.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuA4-10]
gi|401170468|gb|EJQ77709.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuA4-10]
Length = 242
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDG+FA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGEFANVLMHPRYKVEKTYVAKIKGPLTGDKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P V+++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPAQVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVMKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|422810361|ref|ZP_16858772.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL J1-208]
gi|378752025|gb|EHY62613.1| ribosomal small subunit pseudouridine synthase A [Listeria
monocytogenes FSL J1-208]
Length = 233
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A ++G T+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVVAEDVTAFADGITLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I++ + EG+ H+V+ + G + LKR+ +G L
Sbjct: 157 DGYTCKPARLEIINPN------EIKVTIQEGKFHQVKRMFAARGKTVSYLKRISMGNLPL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DESLELGEYRPLTETELAILQNK 233
>gi|317124964|ref|YP_004099076.1| pseudouridine synthase [Intrasporangium calvum DSM 43043]
gi|315589052|gb|ADU48349.1| pseudouridine synthase [Intrasporangium calvum DSM 43043]
Length = 334
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD T GL+++TNDGD A + HP+ + K Y+AT+ G V + + EG
Sbjct: 191 RLFHVGRLDADTEGLLLLTNDGDLAHRLQHPAYGVLKTYLATVRGPVGRDVGKQLREGVE 250
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E T D +++ QP + I +V+HEGR H VR +++ G + L R +G R
Sbjct: 251 LEDGPVTVDSFKVVDSQPG--KALIEVVLHEGRKHVVRRMLELVGHPVLELVRTEVGPIR 308
Query: 142 LPSDLGIGMHVELKQSDL 159
L DL G L ++++
Sbjct: 309 L-GDLRSGRMRRLNKAEI 325
>gi|118580486|ref|YP_901736.1| pseudouridine synthase [Pelobacter propionicus DSM 2379]
gi|118503196|gb|ABK99678.1| ribosomal large subunit pseudouridine synthase B [Pelobacter
propionicus DSM 2379]
Length = 271
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T GL+++TNDGD+A + HP +++KEY + G V++ + + G
Sbjct: 95 KERVYPVGRLDYNTEGLLLLTNDGDWANKLMHPRHEIEKEYHVRVRGKVHQSQIDQLKNG 154
Query: 80 TVIEGTHCTPDVVELLP--PQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
++G P V L+ Q D + I +HEGRN +VR + + L + LKR+R
Sbjct: 155 VDLDGRPTAPAQVRLIKDGEQNDW----LSITIHEGRNRQVRRMCEAVSLSVVRLKRVRY 210
Query: 138 GGFRLPSDLGIGMHVELKQSDLKLM 162
G + L G H L +++ + +
Sbjct: 211 GALEM-RGLKPGQHRLLTEAEARAL 234
>gi|410092391|ref|ZP_11288918.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
viridiflava UASWS0038]
gi|409760243|gb|EKN45401.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
viridiflava UASWS0038]
Length = 407
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDEMLE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G V+E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKTGVVLEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|336401090|ref|ZP_08581862.1| hypothetical protein HMPREF0404_01153 [Fusobacterium sp. 21_1A]
gi|336161447|gb|EGN64448.1| hypothetical protein HMPREF0404_01153 [Fusobacterium sp. 21_1A]
Length = 234
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R+F +GRLD T+GLI++TNDG+ + HP S++ K+Y I G + K + + +G
Sbjct: 93 KRIFPIGRLDYMTSGLILLTNDGELFNRIVHPKSEIYKKYYVKIFGEIKKEEIAELKKGV 152
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++ P ++ + D + + I + EGRN ++R +++ G K+ L+R +IG
Sbjct: 153 LLNDGKTLP--AKISGIKYDKNKTSMYISIREGRNRQIRRMIEKFGYKVLMLRREKIGEL 210
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + EL + +++ +
Sbjct: 211 SL-GDLEEGKYRELTKQEIEYL 231
>gi|229058206|ref|ZP_04196594.1| Pseudouridine synthase [Bacillus cereus AH603]
gi|423509391|ref|ZP_17485922.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuA2-1]
gi|423555661|ref|ZP_17531964.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
MC67]
gi|228720070|gb|EEL71654.1| Pseudouridine synthase [Bacillus cereus AH603]
gi|401197065|gb|EJR04003.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
MC67]
gi|402456682|gb|EJV88455.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuA2-1]
Length = 242
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDG+FA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGEFANVLMHPRYKVEKTYVAKIKGPLTGDKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P V+++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPAQVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVMKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|306824439|ref|ZP_07457785.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304433226|gb|EFM36196.1| ribosomal small subunit pseudouridine synthase A [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 240
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 18 LPRPR-LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
L R + +F VGRLD+ T GL+++TNDG A A+ P + K Y+A + G +++ +
Sbjct: 90 LARTKEVFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTYLAQVKGIMSQEDVETF 149
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
++G ++ C P +E+L ++R+ + EG+ H+V+ +V G ++ L+RL
Sbjct: 150 AKGISLKDFTCQPAKLEILSVDSGKDESQVRVTIAEGKFHQVKRMVSYCGKEVVDLQRLT 209
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
+G L +L G L + +L+++
Sbjct: 210 MGTLALDENLERGEWRRLTKEELEVL 235
>gi|449109987|ref|ZP_21746619.1| pseudouridine synthase [Treponema denticola ATCC 33520]
gi|449120705|ref|ZP_21757088.1| pseudouridine synthase [Treponema denticola H1-T]
gi|449123110|ref|ZP_21759440.1| pseudouridine synthase [Treponema denticola MYR-T]
gi|448946630|gb|EMB27484.1| pseudouridine synthase [Treponema denticola MYR-T]
gi|448947276|gb|EMB28123.1| pseudouridine synthase [Treponema denticola H1-T]
gi|448957695|gb|EMB38435.1| pseudouridine synthase [Treponema denticola ATCC 33520]
Length = 234
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD+ + G+I+ TNDGDF+ V HPSS+++KEY L G
Sbjct: 99 RLYNIGRLDMLSGGVILFTNDGDFSAKVEHPSSEIEKEYEVITVFEYPDEILQKFLRGVR 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG E I + ++RIV+ EG+N E+R ++K +K+ L R+RIG
Sbjct: 159 IEGVFYKALSAE------RISKNKMRIVLIEGKNREIRRVLKFFNIKIKKLTRVRIGCVH 212
Query: 142 LPSDLGIGMHVELKQSDLK-LMG 163
L SDL G H L ++K L+G
Sbjct: 213 L-SDLPSGKHRPLTSEEIKGLLG 234
>gi|282848924|ref|ZP_06258314.1| pseudouridylate synthase [Veillonella parvula ATCC 17745]
gi|294793632|ref|ZP_06758769.1| pseudouridylate synthase [Veillonella sp. 3_1_44]
gi|282581429|gb|EFB86822.1| pseudouridylate synthase [Veillonella parvula ATCC 17745]
gi|294455202|gb|EFG23574.1| pseudouridylate synthase [Veillonella sp. 3_1_44]
Length = 242
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY+K+ KR ++ +GRLD+ T GL+++TNDG+ AQ ++HPS ++K Y I
Sbjct: 87 DYIKNETKR--------IYPIGRLDLYTEGLLLLTNDGELAQNLTHPSKGIEKTYEVRIK 138
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G V L I+ G +E P + L + I +HEGRN +VR + ++
Sbjct: 139 GRVRDDDLQIIANGVELEDGITAPATIVDLGFDDHNGVHEVEITIHEGRNRQVRRMFEHF 198
Query: 126 GLKLYSLKRLRIGGFRL 142
G ++++LKR+ G L
Sbjct: 199 GYRIHNLKRIAYAGLTL 215
>gi|336418482|ref|ZP_08598758.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium sp.
11_3_2]
gi|336164580|gb|EGN67483.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium sp.
11_3_2]
Length = 234
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R+F++GRLD T+GLI++TNDG+ + HP S++ K+Y I G + K + + +G
Sbjct: 93 KRIFSIGRLDYMTSGLILLTNDGELFNRIVHPKSEIYKKYYVKIFGEIKKEEIAELKKGV 152
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++ P ++ + D + + I + EGRN ++R +++ G K+ L+R +IG
Sbjct: 153 LLNDGKTLP--AKISGIKYDKNKTSMYISIREGRNRQIRRMIEKFGYKVLMLRREKIGEL 210
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + +L + +++ +
Sbjct: 211 SL-GDLEEGKYRKLTKQEIEYL 231
>gi|188589639|ref|YP_001920921.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum E3 str. Alaska E43]
gi|188499920|gb|ACD53056.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum E3 str. Alaska E43]
Length = 236
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R++ +GRLD ++G+I++TNDGD + HP +L K+YIA + G V+K+ + ++G
Sbjct: 95 ERIYPIGRLDYDSSGIILLTNDGDIYNKIIHPREELNKKYIAVVKGEVSKKDIDTFNKGI 154
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I G P +E+L + + + + +HEG+N ++R++ ++ SL R+ IG
Sbjct: 155 DIGGYVTAPASLEVLSYEN--GKSTVEVCIHEGKNRQIRKMCTAINHEVLSLNRVSIGEI 212
Query: 141 RL 142
+L
Sbjct: 213 QL 214
>gi|415885365|ref|ZP_11547293.1| Pseudouridine synthase [Bacillus methanolicus MGA3]
gi|387591034|gb|EIJ83353.1| Pseudouridine synthase [Bacillus methanolicus MGA3]
Length = 239
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+FA + HP ++++K Y+A G +K L ++ +G
Sbjct: 92 KQRIYPVGRLDYDTSGLLLLTNDGEFANLLMHPRNEIEKVYVAKTKGIPSKEKLKSLEKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E P +LL I I +HEGRN +VR + + G + LKR R G
Sbjct: 152 IKLEDGVTAPAKTKLLSFDKRKQTAIIEITIHEGRNRQVRRMFEAIGHPVLKLKRERYGF 211
Query: 140 FRL 142
L
Sbjct: 212 LTL 214
>gi|386817237|ref|ZP_10104455.1| ribosomal large subunit pseudouridine synthase B [Thiothrix nivea
DSM 5205]
gi|386421813|gb|EIJ35648.1| ribosomal large subunit pseudouridine synthase B [Thiothrix nivea
DSM 5205]
Length = 285
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 2/145 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + R +GRLD+ T GL++ T DG+ A + HPSS++++EY + G V LI
Sbjct: 94 PNIRAGRWVMIGRLDINTDGLLLFTTDGELANKLMHPSSEVEREYAVRVLGKVEPEMLIQ 153
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ EG +E + + + + +V+ EGRN EVR L ++ G+K+ L R+
Sbjct: 154 LQEGVELEDGKA--NFLRIKDAGGEGANHWYHVVLAEGRNREVRRLWESQGVKVSRLIRI 211
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLK 160
R G LP L G H EL L+
Sbjct: 212 RYGSVELPRYLRTGHHKELDVKALR 236
>gi|116513179|ref|YP_812086.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris SK11]
gi|414075236|ref|YP_007000453.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris UC509.9]
gi|116108833|gb|ABJ73973.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris SK11]
gi|413975156|gb|AFW92620.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. cremoris UC509.9]
Length = 242
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+I++NDG ++ P ++KEY A IDG V + +EG
Sbjct: 93 RKDIFPVGRLDKNTEGLLILSNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFAEG 152
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
T+ G P + + + IR+++HEG+ H+V+ + + + + LKR
Sbjct: 153 LTLKNGEKARPGELFVEKTYKGDSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKR 212
Query: 135 LRIGGFRLPSDLGIGMH 151
+R+G L SDL +G +
Sbjct: 213 IRMGNLALDSDLALGAY 229
>gi|188997597|ref|YP_001931848.1| RNA-binding S4 domain-containing protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932664|gb|ACD67294.1| RNA-binding S4 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 244
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+LF VGRLD+ T GL+I+T DG F +SHP ++KEY A ++G ++ + SE
Sbjct: 95 KLFPVGRLDIDTEGLLILTTDGQFGHRLSHPKWNIEKEYYAIVEGDISNIDF-SESENKG 153
Query: 82 I----EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
I E P V++L D + I I + EG+ H V+ +++ G + LKR+RI
Sbjct: 154 IYLKKEKYQTKPFKVKVLNTSKD--KSEILITLTEGKYHIVKRIMQELGYPVLYLKRIRI 211
Query: 138 GGFRLPSDLGIGMHVELKQSDLK 160
G +L DL G EL + ++K
Sbjct: 212 GNLKLDEDLLPGEFRELTEKEIK 234
>gi|284802783|ref|YP_003414648.1| hypothetical protein LM5578_2540 [Listeria monocytogenes 08-5578]
gi|284995925|ref|YP_003417693.1| hypothetical protein LM5923_2490 [Listeria monocytogenes 08-5923]
gi|284058345|gb|ADB69286.1| hypothetical protein LM5578_2540 [Listeria monocytogenes 08-5578]
gi|284061392|gb|ADB72331.1| hypothetical protein LM5923_2490 [Listeria monocytogenes 08-5923]
Length = 233
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
LF VGRLD T GL+I+TNDG A + P + K Y A IDG V + A + G +
Sbjct: 96 LFPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTAADVEAFAAGIEL 155
Query: 83 -EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+G C P +E++ P I + + EG+ H+V+ + G + LKR+ +G +
Sbjct: 156 DDGYTCKPASLEIITPN------EINVTIQEGKFHQVKRMFAARGKTVSYLKRISMGNLQ 209
Query: 142 LPSDLGIGMHVELKQSDLKLMGWK 165
L L +G + L +++L ++ K
Sbjct: 210 LDESLELGEYRPLTEAELAILQNK 233
>gi|355640952|ref|ZP_09051976.1| ribosomal large subunit pseudouridine synthase B, partial
[Pseudomonas sp. 2_1_26]
gi|354831088|gb|EHF15116.1| ribosomal large subunit pseudouridine synthase B, partial
[Pseudomonas sp. 2_1_26]
Length = 273
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V + +
Sbjct: 103 RLPRLRTGRWINVGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVTEEMI 162
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ G ++E G D+ + P + VV EGRN EVR L ++ GL + L
Sbjct: 163 ERLLNGVMLEDGPAKFSDIQQ--APGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRL 220
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KR+R G L S+L +G + E+ Q ++ ++
Sbjct: 221 KRVRFGPVFLTSELTMGRYREMDQREIDIL 250
>gi|393199849|ref|YP_006461691.1| 16S rRNA uridine-516 pseudouridylate synthase [Solibacillus
silvestris StLB046]
gi|327439180|dbj|BAK15545.1| 16S rRNA uridine-516 pseudouridylate synthase [Solibacillus
silvestris StLB046]
Length = 240
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG+ A + P + K Y A IDG V + + A ++G +E
Sbjct: 101 FPVGRLDKDTEGLLLITNDGNLAHNLLSPKKHVPKWYYAKIDGVVTEADIEAFAQGVTLE 160
Query: 84 -GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
G H P +++L + I +++ EG+ H+V+ + + G K+ LKRL +G +L
Sbjct: 161 DGYHTKPGELKILVSG---EQSEIELMIQEGKFHQVKRMFEAVGKKVTYLKRLSMGTLKL 217
Query: 143 PSDLGIGMH 151
+L +G +
Sbjct: 218 DEELALGEY 226
>gi|325274077|ref|ZP_08140221.1| RNA-binding S4 domain-containing protein [Pseudomonas sp. TJI-51]
gi|324100788|gb|EGB98490.1| RNA-binding S4 domain-containing protein [Pseudomonas sp. TJI-51]
Length = 355
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ G+ + LKR
Sbjct: 167 RLKAGVMLEDGPAKFTDIQKAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGMVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMSQGEIDIL 253
>gi|303233542|ref|ZP_07320201.1| pseudouridylate synthase [Finegoldia magna BVS033A4]
gi|302495346|gb|EFL55093.1| pseudouridylate synthase [Finegoldia magna BVS033A4]
Length = 235
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Query: 26 VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGT 85
VGRLD+ TTGL+I+TNDG FA + P ++ K+Y T+ V++++ T +G
Sbjct: 98 VGRLDLDTTGLLIITNDGKFAHNLISPKKEVSKKYKVTLRDKVDEKY-----NDTFEKGI 152
Query: 86 HCTPDVVELLPPQPD-IPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPS 144
P+ + P + + I + + EG+ H+V+ + + G ++ L+R++IG F+LP
Sbjct: 153 KLMPEDIITKPAKMEIIDDYNCYLTIKEGKYHQVKRMFEKVGNEVVELQRVQIGDFKLPE 212
Query: 145 DLGIGMHVELKQSDLKLMGWKS 166
DL G EL +L+++G +
Sbjct: 213 DLEEGDFRELTDEELRILGLEE 234
>gi|297617939|ref|YP_003703098.1| pseudouridine synthase [Syntrophothermus lipocalidus DSM 12680]
gi|297145776|gb|ADI02533.1| pseudouridine synthase [Syntrophothermus lipocalidus DSM 12680]
Length = 249
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T GL++++NDGDF ++HP +++K Y A + G V+++ + + G +
Sbjct: 103 RVYPVGRLDYDTEGLLLLSNDGDFTHLMTHPRFEIEKVYEAWVQGMVSRKAIERLRAGVI 162
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+ P V +L + D R + I +HEGR +V+++ + G + +LKR R G
Sbjct: 163 IDAVKTAPAKVRVLAKRKD--RTLMEIRIHEGRKRQVKKMCASVGHPVVALKRTRFGDLT 220
Query: 142 L 142
L
Sbjct: 221 L 221
>gi|295100683|emb|CBK98228.1| ribosomal large subunit pseudouridine synthase B [Faecalibacterium
prausnitzii L2-6]
Length = 278
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ VGRLD + GL+++TNDG FAQAV+HPS + K Y T+ ++ ++ +S G V
Sbjct: 99 RLYPVGRLDKDSEGLLLMTNDGAFAQAVTHPSGGISKLYRVTVQPRADEAQILKLSSGVV 158
Query: 82 I-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+ +GT P + ++ +P R + + + EG+N E+R + + GL++ LKR G
Sbjct: 159 LDDGTKTMPCAINVVTDEPG--RTVMEMTLKEGKNREIRRMCEAVGLEVIRLKRNAEGVV 216
Query: 141 RLPSDLGIGMHVELKQSDL 159
+L L G + EL ++++
Sbjct: 217 KL-GMLQPGRYRELTKAEV 234
>gi|418427636|ref|ZP_13000641.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus VRS2]
gi|387717924|gb|EIK05919.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus VRS2]
Length = 245
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 8/137 (5%)
Query: 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYI 61
++ DY K + R++ VGRLD T+GL+++TNDG+F ++HP +++K+Y+
Sbjct: 86 TVVTDYFKDIE--------ARIYPVGRLDYDTSGLLLLTNDGEFTNLMTHPRYQIKKKYV 137
Query: 62 ATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVREL 121
A + G + + + A+ +G +E P V++ DI + I + EGRN +VR +
Sbjct: 138 AKLKGYLMREEVKALEKGIELEDGMTQPAEVKVKKQDKDINTTLVEITITEGRNRQVRRM 197
Query: 122 VKNAGLKLYSLKRLRIG 138
++ G ++ L R+ G
Sbjct: 198 FEHFGHQVTKLSRIEYG 214
>gi|386740314|ref|YP_006213494.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
31]
gi|384477008|gb|AFH90804.1| RNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
31]
Length = 373
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HP ++ K Y+AT+ G +KR + + +G
Sbjct: 230 RLFHVGRLDAATEGLLLLTNDGELANRLMHPKYEVTKTYLATVLGEADKRLIKQLRDGIE 289
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
++ D V+++ + IRI +HEGR H VR ++K AG + L R +I
Sbjct: 290 LDDGPAKVDFVQIVDAHQG--KSLIRIELHEGRKHIVRRMLKTAGFPVERLVRTKI 343
>gi|384227717|ref|YP_005619462.1| 23S rRNA pseudouridine 2605 synthase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538657|gb|AEO08634.1| 23S rRNA pseudouridine 2605 synthase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 246
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 75/142 (52%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R ++GRLD+ T GL++ TN+G+ A + HP +K+++EY + G +NK +
Sbjct: 95 PFLNIHRWISIGRLDLNTRGLLLFTNNGNLANKLMHPKNKVEREYYIRVFGQINKNTMNI 154
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ G I+ + + +E + + + V+ EG+N E+R + K ++ L R+
Sbjct: 155 LKNGVKIKDGYASFKSIEPIDCKDSRKNKWFKGVLCEGKNREIRSMWKTVKCQVSRLIRI 214
Query: 136 RIGGFRLPSDLGIGMHVELKQS 157
R G LP +L +G EL +
Sbjct: 215 RYGNIILPKNLQLGHWTELNST 236
>gi|385831863|ref|YP_005869676.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. lactis CV56]
gi|418038857|ref|ZP_12677173.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|326407871|gb|ADZ64942.1| ribosomal small subunit pseudouridine synthase A [Lactococcus
lactis subsp. lactis CV56]
gi|354692864|gb|EHE92669.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 273
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+I+TNDG ++ P ++KEY A IDG V + +EG
Sbjct: 124 REDIFPVGRLDKNTEGLLILTNDGALGHDLTQPKRHVEKEYFARIDGKVTDEIVNKFAEG 183
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPR----PRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
T+ G P + + + IR+++HEG+ H+V+ + + + + LKR
Sbjct: 184 LTLKNGEKARPGELFIENIYKGESQSGWISEIRVIIHEGKFHQVKRMFEAVEMYVLYLKR 243
Query: 135 LRIGGFRLPSDLGIGMH 151
+R+G L SDL +G +
Sbjct: 244 IRMGNLALDSDLALGAY 260
>gi|398855591|ref|ZP_10612073.1| pseudouridine synthase family protein [Pseudomonas sp. GM80]
gi|398230641|gb|EJN16656.1| pseudouridine synthase family protein [Pseudomonas sp. GM80]
Length = 407
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|379726938|ref|YP_005319123.1| ribosomal small subunit pseudouridine synthaseA [Melissococcus
plutonius DAT561]
gi|376317841|dbj|BAL61628.1| ribosomal small subunit pseudouridine synthaseA [Melissococcus
plutonius DAT561]
Length = 243
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R +F VGRLD T GL+++TNDGD A + P + KEY+A IDG V ++ + ++G
Sbjct: 93 RKDIFPVGRLDKDTEGLLLLTNDGDLAHQLLSPKKHVDKEYLAEIDGIVTEQDIKLFAKG 152
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
T+ G P L+ Q D I + + EG+ H+V+ + + G ++ LKRL+
Sbjct: 153 FTLKNGEAVKP--ARLIIDQMDEGHQMTIIHLTIQEGKFHQVKRMFETIGKRVTYLKRLK 210
Query: 137 IGGFRLPSDLGIGMH-----VELKQ 156
+G L SDL +G + VEL Q
Sbjct: 211 MGSLSLDSDLPLGKYRPLTTVELAQ 235
>gi|182419423|ref|ZP_02950675.1| RNA pseudouridine synthase family protein [Clostridium butyricum
5521]
gi|237666914|ref|ZP_04526899.1| RNA pseudouridine synthase family protein [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182376754|gb|EDT74326.1| RNA pseudouridine synthase family protein [Clostridium butyricum
5521]
gi|237658113|gb|EEP55668.1| RNA pseudouridine synthase family protein [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 238
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 3/140 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+++TNDG+ + P + K Y A ID V+++ + A G T+
Sbjct: 98 FPVGRLDKDTVGLLLLTNDGELNHRLISPKWHVDKVYYAKIDKKVDEKDIQAFKSGITLD 157
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C +E++ + IR+ + EG+ H+V+ + + G K+ LKR GG L
Sbjct: 158 DGYKCMEAKLEIISASEE--GSEIRVTIQEGKFHQVKRMFEAVGKKVEYLKREEFGGLSL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
+DL G + EL +L L+
Sbjct: 216 DTDLEEGEYRELSDEELALL 235
>gi|398863457|ref|ZP_10619022.1| pseudouridine synthase family protein [Pseudomonas sp. GM78]
gi|398247669|gb|EJN33105.1| pseudouridine synthase family protein [Pseudomonas sp. GM78]
Length = 403
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|398979712|ref|ZP_10688598.1| pseudouridine synthase family protein [Pseudomonas sp. GM25]
gi|398135445|gb|EJM24562.1| pseudouridine synthase family protein [Pseudomonas sp. GM25]
Length = 405
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G V+E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKAGVVLEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMSQYEVDVL 253
>gi|77457719|ref|YP_347224.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
fluorescens Pf0-1]
gi|77381722|gb|ABA73235.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
fluorescens Pf0-1]
Length = 405
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G V+E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKAGVVLEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMSQYEVDVL 253
>gi|335030579|ref|ZP_08524067.1| 16S pseudouridylate 516 synthase [Streptococcus infantis SK1076]
gi|334265870|gb|EGL84361.1| 16S pseudouridylate 516 synthase [Streptococcus infantis SK1076]
Length = 240
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 76/140 (54%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ T GL+++TNDG A A+ P + K Y+A + G + + ++G +
Sbjct: 96 VFPVGRLDIDTHGLLLLTNDGKLAHALLSPKRHVDKTYLAQVKGIMTDEDIETFAQGIPL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +EL+ + + +R+ + EG+ H+V+ +V G ++ L+RL +G L
Sbjct: 156 KDFTCQPAKLELVSVDTEKNQSLVRVTIAEGKFHQVKRMVAYCGKEVVDLQRLTMGTLTL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
DL G L + +L+ +
Sbjct: 216 DEDLKRGEWRRLTKDELEAL 235
>gi|294791771|ref|ZP_06756919.1| pseudouridylate synthase [Veillonella sp. 6_1_27]
gi|416999208|ref|ZP_11939877.1| pseudouridine synthase B, ribosomal large subunit [Veillonella
parvula ACS-068-V-Sch12]
gi|294457001|gb|EFG25363.1| pseudouridylate synthase [Veillonella sp. 6_1_27]
gi|333977361|gb|EGL78220.1| pseudouridine synthase B, ribosomal large subunit [Veillonella
parvula ACS-068-V-Sch12]
Length = 242
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
DY+K+ KR ++ +GRLD+ T GL+++TNDG+ AQ ++HPS ++K Y I
Sbjct: 87 DYIKNETKR--------IYPIGRLDLYTEGLLLLTNDGELAQNLTHPSKGVEKTYEVRIK 138
Query: 66 GAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G V L I+ G +E P + L + I +HEGRN +VR + ++
Sbjct: 139 GRVRDDDLQIIANGVELEDGITAPATIVDLGFDDHNGVHEVEITIHEGRNRQVRRMFEHF 198
Query: 126 GLKLYSLKRLRIGGFRL 142
G ++++LKR+ G L
Sbjct: 199 GYRIHNLKRIAYAGLTL 215
>gi|410636890|ref|ZP_11347481.1| 23S rRNA pseudouridine2605 synthase [Glaciecola lipolytica E3]
gi|410143696|dbj|GAC14686.1| 23S rRNA pseudouridine2605 synthase [Glaciecola lipolytica E3]
Length = 284
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P + R VGRLD+ T+GL++ TNDG+ A + HP ++Q+EY + G V+ + +
Sbjct: 91 RLPKIQNGRWIAVGRLDINTSGLLLFTNDGELANRLMHPKHEIQREYAVRVFGEVDHKMI 150
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ +G ++ + P + + + EGRN EVR L ++ G+++ L
Sbjct: 151 TQLKKGVELDDGEAKFTTISRRPGDDESLNSWFNVTLSEGRNREVRRLWESQGVQVSRLI 210
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDL 159
R+ GG L L G +EL D+
Sbjct: 211 RVNYGGLELQKRLPQGGWIELTLEDV 236
>gi|398986962|ref|ZP_10691786.1| pseudouridine synthase family protein [Pseudomonas sp. GM24]
gi|399016510|ref|ZP_10718724.1| pseudouridine synthase family protein [Pseudomonas sp. GM16]
gi|398105016|gb|EJL95137.1| pseudouridine synthase family protein [Pseudomonas sp. GM16]
gi|398151401|gb|EJM39952.1| pseudouridine synthase family protein [Pseudomonas sp. GM24]
Length = 409
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|288556014|ref|YP_003427949.1| pseudouridylate synthase [Bacillus pseudofirmus OF4]
gi|288547174|gb|ADC51057.1| pseudouridylate synthase [Bacillus pseudofirmus OF4]
Length = 242
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F +GRLD T+GLI++TNDG+FA + HP K+ K Y+A + G + L + G V
Sbjct: 94 RVFPIGRLDYDTSGLILLTNDGEFANQLMHPKFKIDKVYVAKVKGIPARESLKKLQHGVV 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V+L+ +++ +HEGRN +VR + + G + LKR +
Sbjct: 154 LEDGKTAPAKVKLVSMDKKKQTAIVQLTIHEGRNRQVRRMFEAIGHPVMKLKREQYSFLN 213
Query: 142 LPS 144
L S
Sbjct: 214 LRS 216
>gi|218896501|ref|YP_002444912.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
G9842]
gi|228900151|ref|ZP_04064384.1| Pseudouridine synthase [Bacillus thuringiensis IBL 4222]
gi|228907203|ref|ZP_04071064.1| Pseudouridine synthase [Bacillus thuringiensis IBL 200]
gi|228938683|ref|ZP_04101288.1| Pseudouridine synthase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228964544|ref|ZP_04125654.1| Pseudouridine synthase [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228971565|ref|ZP_04132189.1| Pseudouridine synthase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978176|ref|ZP_04138554.1| Pseudouridine synthase [Bacillus thuringiensis Bt407]
gi|384185482|ref|YP_005571378.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis serovar chinensis CT-43]
gi|402561437|ref|YP_006604161.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis HD-771]
gi|410673773|ref|YP_006926144.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis Bt407]
gi|423361530|ref|ZP_17339032.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD022]
gi|423382966|ref|ZP_17360222.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG1X1-2]
gi|423530574|ref|ZP_17507019.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuB1-1]
gi|423564133|ref|ZP_17540409.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
MSX-A1]
gi|434374510|ref|YP_006609154.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis HD-789]
gi|452197797|ref|YP_007477878.1| Ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|218545922|gb|ACK98316.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
G9842]
gi|228781648|gb|EEM29848.1| Pseudouridine synthase [Bacillus thuringiensis Bt407]
gi|228788224|gb|EEM36179.1| Pseudouridine synthase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228795144|gb|EEM42640.1| Pseudouridine synthase [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228821059|gb|EEM67079.1| Pseudouridine synthase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228852424|gb|EEM97217.1| Pseudouridine synthase [Bacillus thuringiensis IBL 200]
gi|228859557|gb|EEN03984.1| Pseudouridine synthase [Bacillus thuringiensis IBL 4222]
gi|326939191|gb|AEA15087.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis serovar chinensis CT-43]
gi|401079341|gb|EJP87639.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD022]
gi|401197624|gb|EJR04553.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
MSX-A1]
gi|401643826|gb|EJS61520.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BAG1X1-2]
gi|401790089|gb|AFQ16128.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis HD-771]
gi|401873067|gb|AFQ25234.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis HD-789]
gi|402447089|gb|EJV78947.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuB1-1]
gi|409172902|gb|AFV17207.1| ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis Bt407]
gi|452103190|gb|AGG00130.1| Ribosomal large subunit pseudouridine synthase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 242
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANILMHPKYKVEKTYVAKIKGPLTGEKIRMLERGVA 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V+++ +++ +HEGRN +VR + + K+ LKR L
Sbjct: 154 LEDGKTAPAHVKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|404492913|ref|YP_006717019.1| 23S rRNA pseudouridine 2605 synthase [Pelobacter carbinolicus DSM
2380]
gi|77544988|gb|ABA88550.1| 23S rRNA pseudouridine 2605 synthase [Pelobacter carbinolicus DSM
2380]
Length = 236
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF VGRLD+ T GL+++TNDGD A +SHPS ++ K Y+ + G+++ + EG
Sbjct: 94 RARLFPVGRLDLNTEGLLLLTNDGDLAWRLSHPSHEVCKTYLVRVQGSLSCEARRQLQEG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++E P V + + + + +HEGRN +VR + + G + LKR+R
Sbjct: 154 VLLEEGVTAPAKVARV--RQAGSHTWMELSIHEGRNRQVRRMCEAVGCPVSRLKRIRYAF 211
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L DL G H +L ++++
Sbjct: 212 LDL-GDLRPGQHRQLSRNEV 230
>gi|398967141|ref|ZP_10681769.1| pseudouridine synthase family protein [Pseudomonas sp. GM30]
gi|398145025|gb|EJM33828.1| pseudouridine synthase family protein [Pseudomonas sp. GM30]
Length = 406
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G V+E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKAGVVLEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMSQYEVDVL 253
>gi|399072548|ref|ZP_10750255.1| pseudouridine synthase family protein [Caulobacter sp. AP07]
gi|398042556|gb|EJL35554.1| pseudouridine synthase family protein [Caulobacter sp. AP07]
Length = 245
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
++D K W R+P L +VGRLD T+GL+++T+DGDF V P + K Y A
Sbjct: 91 IYDLLPKRWQIRDPALS-----SVGRLDKDTSGLLLITDDGDFLHRVISPKRHVPKVYRA 145
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPR-IRIVVHEGRNHEVREL 121
T+D + A + GT++ P LL + D+ R R+ + EGR H+VR +
Sbjct: 146 TLDRPLTGAEGAAFASGTLMLEGEDKP----LLAAELDVLGEREARLTITEGRYHQVRRM 201
Query: 122 VKNAGLKLYSLKRLRIGGFRLPSDLGIGMH 151
G + +L R RIGG LP DL G H
Sbjct: 202 FAAVGNHVVALHRERIGGIALPDDLAPGEH 231
>gi|354807566|ref|ZP_09041030.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
curvatus CRL 705]
gi|354513956|gb|EHE85939.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
curvatus CRL 705]
Length = 256
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD T+GL+++TNDGDFA + HP K+ K YIA + G L + +G V
Sbjct: 95 RVYPIGRLDYDTSGLLLLTNDGDFANMMMHPKYKVDKTYIAKVSGLPTADMLRQLRKGIV 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V+++ + I +HEG NH+V+ ++ GL + LKR G
Sbjct: 155 LEKRKTAPAKVKVISTDRRKNTAIVSITIHEGMNHQVKNMLAAVGLPVTKLKRETYGFLT 214
Query: 142 L 142
L
Sbjct: 215 L 215
>gi|385799821|ref|YP_005836225.1| ribosomal large subunit pseudouridine synthase B [Halanaerobium
praevalens DSM 2228]
gi|309389185|gb|ADO77065.1| ribosomal large subunit pseudouridine synthase B [Halanaerobium
praevalens DSM 2228]
Length = 236
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ GRLD ++GL+I+TNDGD ++HP ++ K+Y I G + + G V
Sbjct: 95 RLYPAGRLDFDSSGLLIMTNDGDLTYKLTHPKKEVDKKYRVLIQGKLEEEDFEKFEAGMV 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I+G P + + + + + IV+HEGRN +VR + K AG + SLKR+ GF
Sbjct: 155 IDGQETAPAEISNVDYKGE--QTEFDIVIHEGRNRQVRRMAKIAGFSVISLKRI---GFA 209
Query: 142 LPSDLGI 148
+ G+
Sbjct: 210 FLTLTGV 216
>gi|293364698|ref|ZP_06611415.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
oralis ATCC 35037]
gi|307702946|ref|ZP_07639893.1| putative ribosomal large subunit pseudouridine synthase B
[Streptococcus oralis ATCC 35037]
gi|291316148|gb|EFE56584.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
oralis ATCC 35037]
gi|307623339|gb|EFO02329.1| putative ribosomal large subunit pseudouridine synthase B
[Streptococcus oralis ATCC 35037]
Length = 240
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 80/140 (57%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ T GL+++TNDG A A+ P + K Y+A + G +++ + ++G +
Sbjct: 96 VFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTYLAQVKGIMSQEDVETFAKGIPL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +E++ + + +IR+ + EG+ H+V+ +V G ++ L+RL +G L
Sbjct: 156 KDFTCQPARLEIISIDTEKNQSKIRVTIAEGKFHQVKRMVAYCGKEVVDLQRLTMGTLAL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
+L G L + +L+++
Sbjct: 216 GENLERGEWRRLTKEELEVL 235
>gi|302392426|ref|YP_003828246.1| ribosomal large subunit pseudouridine synthase B [Acetohalobium
arabaticum DSM 5501]
gi|302204503|gb|ADL13181.1| ribosomal large subunit pseudouridine synthase B [Acetohalobium
arabaticum DSM 5501]
Length = 244
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 26 VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGT 85
VGRLD T GL+++TNDGD A++HPS + K Y+AT+ G N+ + A+ +G ++
Sbjct: 99 VGRLDKDTEGLLLLTNDGDLTYALTHPSHGIDKTYMATVKGVPNQSKIEALEKGIKLKDG 158
Query: 86 HCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSD 145
P +L+ + R + + +HEGR H+V+ ++K+ G + LKR++ G L +
Sbjct: 159 WTAPAEAKLVAELAE--RAVVSLTIHEGRKHQVKRMLKSVGHPVEELKRIKFGPLDL-TG 215
Query: 146 LGIGMHVELKQSDLK 160
L G + L S++K
Sbjct: 216 LSPGEYRHLTNSEIK 230
>gi|339488735|ref|YP_004703263.1| RNA-binding S4 domain-containing protein [Pseudomonas putida S16]
gi|431803751|ref|YP_007230654.1| RNA-binding S4 domain-containing protein [Pseudomonas putida
HB3267]
gi|338839578|gb|AEJ14383.1| RNA-binding S4 domain-containing protein [Pseudomonas putida S16]
gi|430794516|gb|AGA74711.1| RNA-binding S4 domain-containing protein [Pseudomonas putida
HB3267]
Length = 355
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ G+ + LKR
Sbjct: 167 RLKAGVMLEDGPAKFTDIQKAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGMVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMTQGEIDIL 253
>gi|334143840|ref|YP_004536996.1| pseudouridine synthase Rsu [Thioalkalimicrobium cyclicum ALM1]
gi|333964751|gb|AEG31517.1| pseudouridine synthase Rsu [Thioalkalimicrobium cyclicum ALM1]
Length = 285
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + R ++GRLD+ T+GL+++TN+G+ A + HPS +L++EY I G V + L
Sbjct: 95 PKIIHGRWISIGRLDLNTSGLLLLTNNGELANRMMHPSYELEREYAVRIFGEVTEEILAR 154
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ G ++ D V LP + R+++ EG+ EVR L + G+K+ L R+
Sbjct: 155 LRTGVQLDDGLAKFDYVGKLPSDEEAQNQWFRVILREGKYREVRRLWEAQGVKVSRLIRV 214
Query: 136 RIGGFRLPSDLGIG 149
R G LP L G
Sbjct: 215 RYGDISLPKGLRRG 228
>gi|253680889|ref|ZP_04861692.1| RNA pseudouridine synthase family protein [Clostridium botulinum D
str. 1873]
gi|416350583|ref|ZP_11680927.1| RNA pseudouridylate synthase family protein [Clostridium botulinum
C str. Stockholm]
gi|253562738|gb|EES92184.1| RNA pseudouridine synthase family protein [Clostridium botulinum D
str. 1873]
gi|338196213|gb|EGO88420.1| RNA pseudouridylate synthase family protein [Clostridium botulinum
C str. Stockholm]
Length = 238
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI- 82
F VGRLD T G +++TNDGD ++ P + K Y A ID V+++ + A +G V+
Sbjct: 98 FPVGRLDKDTEGFLLITNDGDLNHRLTSPKWHVDKIYYAEIDKIVDEKDIRAFEKGIVLD 157
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E+L D + I + EG+ H+V+ + + K+ LKRL++G L
Sbjct: 158 DGYKCLPAKLEILS--ADENGSEVNITIQEGKFHQVKRMFEAREKKVIYLKRLQMGNLVL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
L G + EL + ++K++
Sbjct: 216 DESLNEGEYRELTEDEIKVL 235
>gi|167756635|ref|ZP_02428762.1| hypothetical protein CLORAM_02172 [Clostridium ramosum DSM 1402]
gi|237733923|ref|ZP_04564404.1| ribosomal large subunit pseudouridine synthase B [Mollicutes
bacterium D7]
gi|365833005|ref|ZP_09374529.1| pseudouridine synthase [Coprobacillus sp. 3_3_56FAA]
gi|374627648|ref|ZP_09700051.1| pseudouridine synthase [Coprobacillus sp. 8_2_54BFAA]
gi|167702810|gb|EDS17389.1| pseudouridylate synthase [Clostridium ramosum DSM 1402]
gi|229383004|gb|EEO33095.1| ribosomal large subunit pseudouridine synthase B [Coprobacillus sp.
D7]
gi|365259276|gb|EHM89266.1| pseudouridine synthase [Coprobacillus sp. 3_3_56FAA]
gi|373913096|gb|EHQ44938.1| pseudouridine synthase [Coprobacillus sp. 8_2_54BFAA]
Length = 241
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 72/123 (58%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGLII++NDG+FA + HP S L+K Y +I G + L + +G
Sbjct: 92 KERIYPVGRLDFDTTGLIIMSNDGEFANMIMHPRSHLEKIYEVSIKGLITGPTLNKLEKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+EG P ++++ + ++I + EG+N +V+++ ++ G + L R+ IGG
Sbjct: 152 VYLEGVKTLPCKIKVVDKDTEHKTTMLKIKLVEGKNRQVKKMFESVGHPVKRLHRVSIGG 211
Query: 140 FRL 142
L
Sbjct: 212 INL 214
>gi|33861215|ref|NP_892776.1| pseudouridylate synthase specific to ribosomal small subunit
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33639947|emb|CAE19117.1| putative pseudouridylate synthase specific to ribosomal small
subunit [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 240
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F +GRLD + GLI +TNDGD + + +KEYI +++ +N+ + ++S G
Sbjct: 96 RIFPIGRLDKPSEGLIFLTNDGDIVNKILRARNNHEKEYIVSVNRPINRDFIQSMSNGVE 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I GT V+ L P+ + RI++ +G N ++R + ++ G ++ SLKR+RI +
Sbjct: 156 ILGTITKNCFVKQLGPK------KFRIILTQGLNRQIRRMCESLGFRVKSLKRVRIMNIK 209
Query: 142 LPSDLGIGMHVELKQSDL 159
L D+ IG + E + +L
Sbjct: 210 L--DVSIGEYREFTKEEL 225
>gi|410633458|ref|ZP_11344102.1| 23S rRNA pseudouridine2605 synthase [Glaciecola arctica BSs20135]
gi|410146959|dbj|GAC20969.1| 23S rRNA pseudouridine2605 synthase [Glaciecola arctica BSs20135]
Length = 285
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 76/149 (51%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P + R VGRLD+ T+GL++ TNDG+ A + HPS ++++EY + G V + L
Sbjct: 91 RLPVIKNGRWIAVGRLDINTSGLLLFTNDGELANRLMHPSHEVEREYAVRVFGEVEDKML 150
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+++G +E + P + + + EGRN EVR L ++ G+++ L
Sbjct: 151 KRLTKGVQLEDGEAKFTNIVKRPGDEESTNTWFNVSLSEGRNREVRRLWESQGVQVSRLM 210
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L L G VEL DL +
Sbjct: 211 RVRYGTLELQKRLPQGGWVELGLPDLNTL 239
>gi|313885042|ref|ZP_07818794.1| pseudouridylate synthase [Eremococcus coleocola ACS-139-V-Col8]
gi|312619733|gb|EFR31170.1| pseudouridylate synthase [Eremococcus coleocola ACS-139-V-Col8]
Length = 246
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 87/158 (55%), Gaps = 9/158 (5%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D L++ D+ P L+++GRLD T GL+I+T +G ++ + P + K Y ++
Sbjct: 85 DLLQAQDRH------PDLYSLGRLDRFTEGLLILTTNGPLSRRLLQPHQHVAKTYAVEVN 138
Query: 66 GAVNKRHLIAISEGTVIEGTH-CTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKN 124
G + + A ++G VI+ ++ C P ++++ Q R ++ +HEG+ H+V+++ +
Sbjct: 139 GFLGYDQVQAFAQGIVIDQSYQCQPAQLQII--QAGSSASRAQVTLHEGKFHQVKKMFLS 196
Query: 125 AGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
G+K+ LKRL G L DL G + LK +L L+
Sbjct: 197 LGVKVTQLKRLSFAGIDLDPDLAPGQYRVLKADELALI 234
>gi|237744367|ref|ZP_04574848.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium sp.
7_1]
gi|423136857|ref|ZP_17124500.1| pseudouridine synthase [Fusobacterium nucleatum subsp. animalis
F0419]
gi|229431596|gb|EEO41808.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium sp.
7_1]
gi|371960924|gb|EHO78567.1| pseudouridine synthase [Fusobacterium nucleatum subsp. animalis
F0419]
Length = 234
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
R+F +GRLD T+GLI++TNDG+ + HP S++ K+Y I G + K + + +G
Sbjct: 93 KRIFPIGRLDYMTSGLILLTNDGELFNRIVHPKSEIYKKYYVKIFGEIKKEEIAELKKGV 152
Query: 81 VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++ P ++ + D + + I + EGRN ++R +++ G K+ L+R +IG
Sbjct: 153 LLNDGKTLP--AKISGIKYDKNKTSMYISIKEGRNRQIRRMIERFGYKVLMLRREKIGEL 210
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L DL G + EL + +++ +
Sbjct: 211 SL-GDLEEGKYRELTKQEIEYL 231
>gi|357239755|ref|ZP_09127089.1| pseudouridylate synthase [Streptococcus ictaluri 707-05]
gi|356751511|gb|EHI68663.1| pseudouridylate synthase [Streptococcus ictaluri 707-05]
Length = 242
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 75/141 (53%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ +F VGRLD T GL+++TN+G A + P + K+Y+A + G + ++G
Sbjct: 93 KKSVFPVGRLDKDTHGLLLLTNNGQLAHELLSPKKHVSKDYVALVSGIMTSEDQEYFAKG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++ HC P +E+L + R+RI + EG+ H+V+ +V G K+ L+R+ +
Sbjct: 153 ISLKDHHCLPARLEILSKDEEDATCRVRIQIKEGKFHQVKRMVAACGKKVIDLQRITMWP 212
Query: 140 FRLPSDLGIGMHVELKQSDLK 160
L S L G + L + +L+
Sbjct: 213 LVLDSQLAKGQYRPLSKDELR 233
>gi|379010835|ref|YP_005268647.1| ribosomal large subunit pseudouridine synthase B [Acetobacterium
woodii DSM 1030]
gi|375301624|gb|AFA47758.1| ribosomal large subunit pseudouridine synthase B [Acetobacterium
woodii DSM 1030]
Length = 245
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ RL+TVGRLD+ T GL+++TNDGD ++HP + +K Y+ + G +++ + G
Sbjct: 91 KERLYTVGRLDMDTEGLLLLTNDGDLTFYLTHPKHEFEKVYVGLVKGCPDQKSIDLFKRG 150
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
IE P ++++ D R +RI HEG+ ++R++ G + LKR+ IG
Sbjct: 151 MAIEDYRTAPADIKIMARNRDTSRLEMRI--HEGKKRQIRKMCAAMGCPIIDLKRVAIGK 208
Query: 140 FRL 142
L
Sbjct: 209 LTL 211
>gi|398872877|ref|ZP_10628153.1| pseudouridine synthase family protein [Pseudomonas sp. GM74]
gi|398201403|gb|EJM88283.1| pseudouridine synthase family protein [Pseudomonas sp. GM74]
Length = 406
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|398925292|ref|ZP_10661786.1| pseudouridine synthase family protein [Pseudomonas sp. GM48]
gi|398172199|gb|EJM60073.1| pseudouridine synthase family protein [Pseudomonas sp. GM48]
Length = 406
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|398920767|ref|ZP_10659492.1| pseudouridine synthase family protein [Pseudomonas sp. GM49]
gi|398167508|gb|EJM55569.1| pseudouridine synthase family protein [Pseudomonas sp. GM49]
Length = 406
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|419492457|ref|ZP_14032185.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47210]
gi|379596154|gb|EHZ60959.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA47210]
Length = 240
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVEIFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRLLTKEELEIL 235
>gi|424922026|ref|ZP_18345387.1| pseudouridine synthase [Pseudomonas fluorescens R124]
gi|404303186|gb|EJZ57148.1| pseudouridine synthase [Pseudomonas fluorescens R124]
Length = 406
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G V+E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKAGVVLEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMSQYEVDVL 253
>gi|148269796|ref|YP_001244256.1| pseudouridine synthase [Thermotoga petrophila RKU-1]
gi|147735340|gb|ABQ46680.1| ribosomal small subunit pseudouridine synthase A [Thermotoga
petrophila RKU-1]
Length = 239
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 19 PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 78
P +F VGRLD GL+I+T+DGDFA V P ++KEYI ++G V + + +
Sbjct: 88 PLKGIFPVGRLDKDAEGLLIITSDGDFAHRVISPKWSVEKEYIVKVEGEVTEDKIEKLKN 147
Query: 79 G-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
G T+ +G VE L ++IV+ EG+ H+++ + GL+ LKR RI
Sbjct: 148 GVTLRDGFFAKAKCVEKLSNDT------LKIVITEGKYHQIKRMTVAVGLRTVHLKRTRI 201
Query: 138 GGFRLPSDLGIGMHVELKQSDLK 160
G LP D+ G + L + ++K
Sbjct: 202 GRLVLPEDMKPGEYRFLSEEEVK 224
>gi|417850073|ref|ZP_12495988.1| putative 16S pseudouridylate 516 synthase [Streptococcus mitis
SK1080]
gi|339455406|gb|EGP68013.1| putative 16S pseudouridylate 516 synthase [Streptococcus mitis
SK1080]
Length = 241
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Query: 12 DKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKR 71
D +P + +L+ VGRLD TTGL+++T++G + HP + K Y ++G +
Sbjct: 84 DLLSPDIQSDKLYAVGRLDRNTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVEVNGLLTPD 143
Query: 72 HLIAISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLY 130
H+ +G V ++GT C P +E+L P + + I I EG+ H+V+++ + G+K+
Sbjct: 144 HIQTFQKGIVFLDGTVCKPARLEILSASPSLSQASITI--SEGKFHQVKKMFLSVGIKVT 201
Query: 131 SLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
SLKR G + L +L G + L +L
Sbjct: 202 SLKRTHFGPWSLDDNLQEGDYRPLNSEEL 230
>gi|167034997|ref|YP_001670228.1| RNA-binding S4 domain-containing protein [Pseudomonas putida GB-1]
gi|166861485|gb|ABY99892.1| RNA-binding S4 domain protein [Pseudomonas putida GB-1]
Length = 355
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ G+ + LKR
Sbjct: 167 RLKAGVMLEDGPAKFTDIQKAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGMVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMTQGEIDIL 253
>gi|398894937|ref|ZP_10646945.1| pseudouridine synthase family protein [Pseudomonas sp. GM55]
gi|398181680|gb|EJM69233.1| pseudouridine synthase family protein [Pseudomonas sp. GM55]
Length = 403
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G V+E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 167 RLKAGVVLEDGPARFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMSQYEVDVL 253
>gi|210633114|ref|ZP_03297681.1| hypothetical protein COLSTE_01590 [Collinsella stercoris DSM 13279]
gi|210159268|gb|EEA90239.1| pseudouridylate synthase [Collinsella stercoris DSM 13279]
Length = 282
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 10/151 (6%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
P LF VGRLD+ TTGL++ T DGD A+ HPS + K Y+A +DG + L + G
Sbjct: 122 PGLFPVGRLDMDTTGLLLFTTDGDLGHALLHPSRHVWKTYVAVVDGVCREGDLEPLRRGI 181
Query: 81 VIEGTHCTP---------DVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
V++ C P DV ++ P +RI + EGR ++V+ ++ G +
Sbjct: 182 VLDDGPCQPARCALRDERDVRDIAPRGLRAGTTAVRIEIREGRKNQVKRMLSKIGHPVLR 241
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
L RLR G L +DL G EL +++ +
Sbjct: 242 LHRLRFGPLEL-NDLPCGSWRELTPTEVAAL 271
>gi|398953749|ref|ZP_10675540.1| pseudouridine synthase family protein [Pseudomonas sp. GM33]
gi|398153448|gb|EJM41948.1| pseudouridine synthase family protein [Pseudomonas sp. GM33]
Length = 403
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|419778141|ref|ZP_14304040.1| pseudouridylate synthase [Streptococcus oralis SK10]
gi|383187549|gb|EIC79996.1| pseudouridylate synthase [Streptococcus oralis SK10]
Length = 240
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DDY ++ +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDYARA----------KEVFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A ++G +++ + ++G ++ C P +EL+ + +R+ + EG+ H+V+
Sbjct: 134 LAQVEGIMSQEDVDTFAKGISLKDFTCQPAKLELVSVDSVKNQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+V G ++ L+RL +G L +L G L + +L+
Sbjct: 194 MVAYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTREELE 233
>gi|400974339|ref|ZP_10801570.1| RNA pseudouridine synthase [Salinibacterium sp. PAMC 21357]
Length = 237
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLDV T+GLII+TNDG+ A ++HPS + K YIA ++G V+ + + + +G
Sbjct: 88 RLFNVGRLDVQTSGLIILTNDGELAHVLAHPSFGVMKTYIAKVEGTVSAQTISQLMKGIE 147
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E D L + + + +H GRN VR +++ AG + L R + G
Sbjct: 148 LEDGPIAVDKARALGRASN-DETMVELTLHSGRNRIVRRMMEAAGHPVIELVRRQFGPLN 206
Query: 142 LPSDLGIGMHVELKQSDL 159
L S LGIG L + +L
Sbjct: 207 LGS-LGIGRTRNLTKVEL 223
>gi|406667765|ref|ZP_11075518.1| Ribosomal small subunit pseudouridine synthase A [Bacillus
isronensis B3W22]
gi|405384400|gb|EKB43846.1| Ribosomal small subunit pseudouridine synthase A [Bacillus
isronensis B3W22]
Length = 236
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG+ A + P + K Y A IDG V + + A ++G +E
Sbjct: 97 FPVGRLDKDTEGLLLITNDGNLAHNLLSPKKHVPKWYYAKIDGVVTEADIEAFAQGVTLE 156
Query: 84 -GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
G H P +++L + I +++ EG+ H+V+ + + G K+ LKRL +G +L
Sbjct: 157 DGYHTKPGELKILVSG---EQSEIELMIQEGKFHQVKRMFEAVGKKVTYLKRLSMGTLKL 213
Query: 143 PSDLGIGMH 151
+L +G +
Sbjct: 214 DEELALGEY 222
>gi|357012566|ref|ZP_09077565.1| pseudouridine synthase [Paenibacillus elgii B69]
Length = 247
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD T GL+++TNDG A + P + K Y A ++GAV+K + A + G +
Sbjct: 100 VFPVGRLDKDTEGLLLLTNDGKLAHNLLSPRKHVPKTYYAEVNGAVDKSDIEAFARGVTL 159
Query: 83 EGTHCT--PDVVELLPPQPDIPR-PRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ + T +++ L +P+ RI + +HEG+ H+V+ + + G ++ LKRL +G
Sbjct: 160 DDGYVTMPAELIVLYGGRPEAGELSRIELTIHEGKFHQVKRMFQAVGKQVTYLKRLAMGS 219
Query: 140 FRLPSDLGIGMHVELKQSD 158
+L L +G EL +++
Sbjct: 220 LKLDEALPLGQSRELTEAE 238
>gi|333394956|ref|ZP_08476775.1| 16S rRNA uridine-516 pseudouridylate synthase related enzyme
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
gi|420145965|ref|ZP_14653409.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402354|gb|EJN55705.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 243
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD T+GLII+TNDG+ A ++HP +++K+Y A ++G L + G
Sbjct: 94 RLYPIGRLDYNTSGLIIITNDGELANLLTHPRYRIEKQYTAKVEGIPTVEALKKLRAGVK 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+E P V++L + + +HEG NHEVR++++ G + L R R
Sbjct: 154 LEKKRTAPAKVKVLSTDRTKKMALVSLTIHEGMNHEVRDMLQAVGYPVNKLSRER 208
>gi|73748599|ref|YP_307838.1| RsuA family pseudouridine synthase [Dehalococcoides sp. CBDB1]
gi|147669359|ref|YP_001214177.1| ribosomal large subunit pseudouridine synthase B [Dehalococcoides
sp. BAV1]
gi|289432625|ref|YP_003462498.1| pseudouridine synthase [Dehalococcoides sp. GT]
gi|452203585|ref|YP_007483718.1| pseudouridine synthase, RsuA family [Dehalococcoides mccartyi
DCMB5]
gi|452205020|ref|YP_007485149.1| pseudouridine synthase, RsuA family [Dehalococcoides mccartyi
BTF08]
gi|73660315|emb|CAI82922.1| pseudouridine synthase, RsuA family [Dehalococcoides sp. CBDB1]
gi|146270307|gb|ABQ17299.1| ribosomal large subunit pseudouridine synthase B [Dehalococcoides
sp. BAV1]
gi|288946345|gb|ADC74042.1| pseudouridine synthase [Dehalococcoides sp. GT]
gi|452110644|gb|AGG06376.1| pseudouridine synthase, RsuA family [Dehalococcoides mccartyi
DCMB5]
gi|452112076|gb|AGG07807.1| pseudouridine synthase, RsuA family [Dehalococcoides mccartyi
BTF08]
Length = 249
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
LF VGRLD ATTGLI++TNDG+ ++HPS +++KEY+ +ID A+ + ++ +G ++
Sbjct: 107 LFPVGRLDEATTGLILLTNDGEMTNRLTHPSYEIEKEYLISIDAALTQADKESLEKGILL 166
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ +P L D P ++++HEG+ VR + G + +LKR RI RL
Sbjct: 167 DDGLTSP---ARLSRVTDEPPYNYKLIIHEGKKRIVRRMFARLGHPIKALKRSRIATLRL 223
>gi|374324529|ref|YP_005077658.1| pseudouridine synthase [Paenibacillus terrae HPL-003]
gi|357203538|gb|AET61435.1| pseudouridine synthase [Paenibacillus terrae HPL-003]
Length = 252
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
+ DYLK + R++ VGRLD T GL+++TNDG+FA ++HP + K Y+A
Sbjct: 84 IVSDYLKGV--------KERVYPVGRLDYDTEGLLLLTNDGEFANLLTHPKHHVPKTYVA 135
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
T+ G + L + +G V+E P VE P+ I+I ++EGRN +VR +
Sbjct: 136 TVKGVPHGTELDKLKKGIVLEDGITAPAEVEYKDVDPNGKESVIQITIYEGRNRQVRRMF 195
Query: 123 KNAGLKLYSLKRLRIGGFRL 142
+ + LKR+ G L
Sbjct: 196 EAISHPVIKLKRIAFGDLLL 215
>gi|379729036|ref|YP_005321232.1| putative ribosomal RNA pseudouridine synthase [Saprospira grandis
str. Lewin]
gi|378574647|gb|AFC23648.1| putative ribosomal RNA pseudouridine synthase [Saprospira grandis
str. Lewin]
Length = 234
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F +GRLD +TGLI++TNDGD + + +KEYI T+D +N+R L ++ G
Sbjct: 95 KERIFPIGRLDKPSTGLILLTNDGDMVNPILRVENGHEKEYIVTVDKPINRRFLQRMAGG 154
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I G VE L P+ R RI++ +G N ++R + + G ++ +LKR+RI
Sbjct: 155 LPILGQITKKAQVEQLGPK------RFRIILKQGLNRQIRRMCEYLGYEVRTLKRVRIMN 208
Query: 140 FRLPSDLGIGMHVELKQSDLK 160
L L G EL +LK
Sbjct: 209 IEL-DQLPKGQWRELSAQELK 228
>gi|229010875|ref|ZP_04168072.1| Pseudouridine synthase [Bacillus mycoides DSM 2048]
gi|423663547|ref|ZP_17638716.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VDM022]
gi|228750549|gb|EEM00378.1| Pseudouridine synthase [Bacillus mycoides DSM 2048]
gi|401295447|gb|EJS01071.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VDM022]
Length = 242
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDG+FA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGEFANVLMHPRYKIEKTYVAKIKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P +++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPAQAKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVMKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|169825022|ref|YP_001692633.1| 16S pseudouridylate synthase [Finegoldia magna ATCC 29328]
gi|167831827|dbj|BAG08743.1| 16S pseudouridylate synthase [Finegoldia magna ATCC 29328]
Length = 235
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 79/142 (55%), Gaps = 6/142 (4%)
Query: 26 VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGT 85
VGRLD+ TTGL+I+TNDG FA + P + K+Y T+ V++++ T +G
Sbjct: 98 VGRLDLDTTGLLIITNDGKFAHNLISPKKDVSKKYKVTLRDKVDEKY-----NDTFEKGI 152
Query: 86 HCTPDVVELLPPQPD-IPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPS 144
P+ + P + + I + + EG+ H+V+ + + G ++ L+R++IG F+LP
Sbjct: 153 KLMPEDIVTKPAKMEIIDDYNCYLTIKEGKYHQVKRMFEKVGNEVVELQRVQIGDFKLPE 212
Query: 145 DLGIGMHVELKQSDLKLMGWKS 166
DL G EL +L+++G +
Sbjct: 213 DLEEGDFRELTDEELRILGLEE 234
>gi|148546656|ref|YP_001266758.1| RNA-binding S4 domain-containing protein [Pseudomonas putida F1]
gi|386011006|ref|YP_005929283.1| RNA-binding S4 domain-containing protein [Pseudomonas putida
BIRD-1]
gi|395447914|ref|YP_006388167.1| RNA-binding S4 domain-containing protein [Pseudomonas putida ND6]
gi|397696804|ref|YP_006534687.1| RNA-binding S4 domain-containing protein [Pseudomonas putida
DOT-T1E]
gi|421523978|ref|ZP_15970605.1| RNA-binding S4 domain-containing protein [Pseudomonas putida LS46]
gi|148510714|gb|ABQ77574.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
putida F1]
gi|313497712|gb|ADR59078.1| RNA-binding S4 domain-containing protein [Pseudomonas putida
BIRD-1]
gi|388561911|gb|AFK71052.1| RNA-binding S4 domain-containing protein [Pseudomonas putida ND6]
gi|397333534|gb|AFO49893.1| RNA-binding S4 domain-containing protein [Pseudomonas putida
DOT-T1E]
gi|402752223|gb|EJX12730.1| RNA-binding S4 domain-containing protein [Pseudomonas putida LS46]
Length = 355
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ G+ + LKR
Sbjct: 167 RLKAGVMLEDGPAKFTDIQKAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGMVVSRLKR 225
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 226 VRFGPVFLNSDLPMGRWREMTQGEIDIL 253
>gi|426410820|ref|YP_007030919.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas sp.
UW4]
gi|426269037|gb|AFY21114.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas sp.
UW4]
Length = 406
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|399009511|ref|ZP_10711942.1| pseudouridine synthase family protein [Pseudomonas sp. GM17]
gi|425898193|ref|ZP_18874784.1| pseudouridine synthase B, ribosomal large subunit [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397892569|gb|EJL09047.1| pseudouridine synthase B, ribosomal large subunit [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|398111929|gb|EJM01802.1| pseudouridine synthase family protein [Pseudomonas sp. GM17]
Length = 404
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRPR---LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRPR +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 106 LPRPREGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 165
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 166 RLKAGVMLEDGPAKFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 224
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 225 VRFGPVFLNSDLPMGRWREMSQYEVDVL 252
>gi|329929427|ref|ZP_08283175.1| pseudouridylate synthase [Paenibacillus sp. HGF5]
gi|328936514|gb|EGG32959.1| pseudouridylate synthase [Paenibacillus sp. HGF5]
Length = 243
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 83
F VGRLD T GL+++TNDG A + P + K Y AT++G V++ + + G ++
Sbjct: 95 FPVGRLDKDTEGLLLLTNDGKLAHELLSPRKHIPKTYEATVEGRVDEEDVRRFAAGVTLD 154
Query: 84 GTHCTPDVVELLPPQPDIPR----------PRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ T LP + I RI + +HEG+ H+V+ + + G K+ LK
Sbjct: 155 DGYVT------LPGELAIHSHEEREDGDQLSRISLTIHEGKFHQVKRMFEAVGKKVVYLK 208
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLMG 163
R+ +G RL +L IG + EL + +L L+G
Sbjct: 209 RISMGELRLDENLEIGTYRELTEQELALIG 238
>gi|187934882|ref|YP_001884642.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum B str. Eklund 17B]
gi|187723035|gb|ACD24256.1| ribosomal large subunit pseudouridine synthase B [Clostridium
botulinum B str. Eklund 17B]
Length = 238
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI- 82
F VGRLD T GL+++TNDG+F + P + K Y A ID VN++ A +G V+
Sbjct: 98 FPVGRLDKDTVGLLLLTNDGEFNHRMISPKWHVDKVYYAKIDKEVNEKDQQAFKKGVVLD 157
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C ++++ P+ +RI + EG+ H+V+ + + K+ LKR GG L
Sbjct: 158 DGYKCLEAKLDIISASPE--GSEVRITIQEGKYHQVKRMFEACDKKVVYLKREEFGGLIL 215
Query: 143 PSDLGIGMHVELKQSDLKLMG 163
+L G + EL +L ++
Sbjct: 216 DENLEEGEYRELSDEELAILN 236
>gi|149001603|ref|ZP_01826576.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP14-BS69]
gi|237649412|ref|ZP_04523664.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae CCRI 1974]
gi|237821288|ref|ZP_04597133.1| ribosomal small subunit pseudouridine synthase A, putative
[Streptococcus pneumoniae CCRI 1974M2]
gi|418095386|ref|ZP_12732502.1| hypothetical protein SPAR40_0312 [Streptococcus pneumoniae GA16531]
gi|418143070|ref|ZP_12779873.1| hypothetical protein SPAR31_0248 [Streptococcus pneumoniae GA13494]
gi|419456875|ref|ZP_13996824.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02254]
gi|147760061|gb|EDK67050.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae SP14-BS69]
gi|353772166|gb|EHD52672.1| hypothetical protein SPAR40_0312 [Streptococcus pneumoniae GA16531]
gi|353810813|gb|EHD91063.1| hypothetical protein SPAR31_0248 [Streptococcus pneumoniae GA13494]
gi|379533561|gb|EHY98774.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA02254]
Length = 240
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++ NDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLANDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|149374978|ref|ZP_01892751.1| putative pseudouridine synthase [Marinobacter algicola DG893]
gi|149360867|gb|EDM49318.1| putative pseudouridine synthase [Marinobacter algicola DG893]
Length = 324
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V++ + +SEG +
Sbjct: 120 RWIAIGRLDINTTGLVLFTTDGELANRLMHPSRQIDREYAVRVFGEVDEAMIKRLSEGVL 179
Query: 82 I-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
+ +G D+ E + + + EGRN EVR L ++ G+++ LKR+R G
Sbjct: 180 LDDGMAKFSDISEAGGKGIN---QWFHVTLLEGRNREVRRLWESQGVRVSRLKRVRYGPI 236
Query: 141 RLPSDLGIGMHVELKQ 156
LPS L +G EL Q
Sbjct: 237 FLPSRLSVGKWEELDQ 252
>gi|423099258|ref|ZP_17086966.1| pseudouridylate synthase [Listeria innocua ATCC 33091]
gi|370794493|gb|EHN62268.1| pseudouridylate synthase [Listeria innocua ATCC 33091]
Length = 233
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG-TVI 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A S G T+
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTAEDVEAFSAGVTLD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P ++++ P I++ + EG+ H+V+ + G + LKR+ +G +L
Sbjct: 157 DGYTCKPAHLDIITPN------EIKVTIQEGKFHQVKRMFAARGKTVSYLKRISMGNLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DESLELGEYRPLTENELLILQNK 233
>gi|344205120|ref|YP_004790262.1| pseudouridine synthase family protein [Mycoplasma putrefaciens KS1]
gi|343957043|gb|AEM68758.1| pseudouridine synthase family protein [Mycoplasma putrefaciens KS1]
Length = 251
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD +GL+I+TNDG+ + + HP + K Y A G V+K+ + + G +
Sbjct: 99 RVYPIGRLDYDVSGLLIMTNDGEMSHFIMHPRYEFFKTYQAMCAGIVSKKQIAELVNGVI 158
Query: 82 IEGTHCTPDV-VELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
I+ + T + +LL + I + + EGR H V+++++ A L L LKR RI
Sbjct: 159 IDDNYLTKAIDAKLLKYDQEKNFSIIELTITEGRKHHVKKMLQAANLNLIKLKRTRIEFL 218
Query: 141 RLPSDLGIGMHVELKQSDLK 160
+ DL G + ELK +++K
Sbjct: 219 EI-GDLKPGQYRELKPNEVK 237
>gi|336392887|ref|ZP_08574286.1| Pseudouridine synthase [Lactobacillus coryniformis subsp. torquens
KCTC 3535]
Length = 243
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD T+GLII+TNDG+ A ++HP +++K+Y A ++G L + G
Sbjct: 94 RLYPIGRLDYNTSGLIIITNDGELANLLTHPRYRIEKQYTAKVEGIPTVEALKKLRAGVK 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+E P V++L + + +HEG NHEVR++++ G + L R R
Sbjct: 154 LEKKRTAPAKVKVLSTDRTKKMALVSLTIHEGMNHEVRDMLQAVGYPVNKLSRER 208
>gi|256847151|ref|ZP_05552597.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
coleohominis 101-4-CHN]
gi|256715815|gb|EEU30790.1| ribosomal large subunit pseudouridine synthase B [Lactobacillus
coleohominis 101-4-CHN]
Length = 240
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 76/141 (53%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD TTG++++TNDG A + HP +++K YIA + G ++ L + +G +
Sbjct: 96 RVYPVGRLDYDTTGILLLTNDGALANKLMHPKFEVEKTYIAKVKGVLSNHDLQKLRQGVI 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++G +LL + R+R+ +HEG H+V+ ++K G + L R G
Sbjct: 156 VDGRKTREAKSKLLEVADNRQSSRVRLTIHEGHYHQVKRMLKAVGHPVIKLHRESYGPLN 215
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L G ELK +++K +
Sbjct: 216 LYGLASGGQWRELKPNEVKQL 236
>gi|419529466|ref|ZP_14069000.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40028]
gi|379575559|gb|EHZ40490.1| pseudouridine synthase family protein [Streptococcus pneumoniae
GA40028]
Length = 220
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TN+G A + P + K Y
Sbjct: 64 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNNGQLAHVLLSPKRHVDKTY 113
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 114 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 173
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 174 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 215
>gi|340751659|ref|ZP_08688469.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium
mortiferum ATCC 9817]
gi|229420623|gb|EEO35670.1| ribosomal large subunit pseudouridine synthase B [Fusobacterium
mortiferum ATCC 9817]
Length = 236
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F +GRLD TTGLI++TNDG+ V HP S++ KEY + G + + + +G
Sbjct: 94 KERIFPIGRLDYNTTGLILLTNDGELFNRVIHPRSEVYKEYYVKVLGEIKDSSIKKLEDG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E P V+L+ + + + + + EGRN +VR +++ + L+R RIG
Sbjct: 154 VELEDGITLPAYVKLISRER--GKSELMVSIREGRNRQVRRMLEAVNTPVLVLRRERIGK 211
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L L +G + EL +S++K +
Sbjct: 212 LSL-GKLKVGEYRELTESEVKYL 233
>gi|406936763|gb|EKD70407.1| hypothetical protein ACD_46C00541G0005 [uncultured bacterium]
Length = 250
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + R VGRLD T+GL+++TNDG+ A + HPSS++++EY I G V +
Sbjct: 94 PLIRNSRWICVGRLDFNTSGLLLITNDGELANKLMHPSSEIEREYAVRIRGDVTPEIIAK 153
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+G +E + ++ + V EGRN VR L + G + L R+
Sbjct: 154 FKKGIQLEDGKAVFN--QITEAGGTGSNHWYHVTVKEGRNRLVRRLWEACGFTISRLIRI 211
Query: 136 RIGGFRLPSDLGIGMHVELKQSDLKLM 162
R G LP+ L G +VEL ++++ L+
Sbjct: 212 RFGNVYLPAGLKQGRYVELDENEIGLL 238
>gi|389685706|ref|ZP_10177030.1| pseudouridine synthase B, ribosomal large subunit [Pseudomonas
chlororaphis O6]
gi|388551359|gb|EIM14628.1| pseudouridine synthase B, ribosomal large subunit [Pseudomonas
chlororaphis O6]
Length = 404
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRPR---LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRPR +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 106 LPRPREGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 165
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 166 RLKAGVMLEDGPAKFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 224
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 225 VRFGPVFLNSDLPMGRWREMSQYEVDVL 252
>gi|417849772|ref|ZP_12495689.1| putative 16S pseudouridylate 516 synthase [Streptococcus mitis
SK1080]
gi|339455699|gb|EGP68300.1| putative 16S pseudouridylate 516 synthase [Streptococcus mitis
SK1080]
Length = 240
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDIARSKE----------VFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P +EL+ + + +IR+ + EG+ H+V+
Sbjct: 134 LAQVKGIMTQGDVETFAEGIPLKDFTCQPAKLELVSIDTEKNQSQIRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+V G ++ L+RL +G L +L G L + +L+
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLQRGEWRRLTKEELE 233
>gi|167646666|ref|YP_001684329.1| pseudouridine synthase [Caulobacter sp. K31]
gi|167349096|gb|ABZ71831.1| pseudouridine synthase [Caulobacter sp. K31]
Length = 245
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
++D K W R+P L +VGRLD T+GL+++T+DGDF V P + K Y A
Sbjct: 91 IYDLLPKRWQIRDPALS-----SVGRLDKDTSGLLLITDDGDFLHRVISPKRHVPKVYRA 145
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDI-PRPRIRIVVHEGRNHEVREL 121
T+D +N A + G ++ P LLP D+ R+ + EGR H+VR +
Sbjct: 146 TLDRPLNGTEGAAFASGALMLEGEEKP----LLPATLDVLGDHEARLTITEGRYHQVRRM 201
Query: 122 VKNAGLKLYSLKRLRIGGFRLPSDLGIGMH 151
G + L R RIGG LP DL G H
Sbjct: 202 FAAVGNHVVGLHRERIGGIDLPEDLAPGEH 231
>gi|395496690|ref|ZP_10428269.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas sp.
PAMC 25886]
Length = 416
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|383807839|ref|ZP_09963396.1| hypothetical protein IMCC13023_13590 [Candidatus Aquiluna sp.
IMCC13023]
gi|383298461|gb|EIC91079.1| hypothetical protein IMCC13023_13590 [Candidatus Aquiluna sp.
IMCC13023]
Length = 260
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD TTGLI++TNDG+ A ++HPS +++K Y+A + G + + + + +G
Sbjct: 110 RVFNVGRLDAETTGLILMTNDGELANQLAHPSYEVEKLYVAKVKGVLGRVEMQKLKDGVR 169
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E PD V++L + +V+H G+N VR +++ G + L R G R
Sbjct: 170 LEDGLAKPDSVKILDQNE--TSTLLELVMHSGKNRIVRRMMEALGHPVLDLTRKSFGPLR 227
Query: 142 LPSDLGIGMHVELKQ 156
L ++ +G EL +
Sbjct: 228 L-ANTKVGQFRELSK 241
>gi|418965340|ref|ZP_13517117.1| pseudouridylate synthase [Streptococcus constellatus subsp.
constellatus SK53]
gi|423069048|ref|ZP_17057836.1| hypothetical protein HMPREF9682_01057 [Streptococcus intermedius
F0395]
gi|355365448|gb|EHG13171.1| hypothetical protein HMPREF9682_01057 [Streptococcus intermedius
F0395]
gi|383342847|gb|EID21050.1| pseudouridylate synthase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 241
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV- 81
L++VGRLD T GL+++T++G + HP + K Y ++G ++ + + A +G V
Sbjct: 95 LYSVGRLDRDTCGLLLITDNGPLGFQLLHPQYHITKMYEVEVNGLLDNQMIKAFQKGIVF 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++GT C P ++ + P+ + + + EG+ H+++++ G+K+ SLKR G F
Sbjct: 155 LDGTICKPALLTIHSSTPN--KSTATVTISEGKFHQIKKMFLTVGVKVTSLKRTHFGAFE 212
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L +L G + QS+L+++
Sbjct: 213 LDPNLAAGEYRAFNQSELEIV 233
>gi|297586934|ref|ZP_06945579.1| ribosomal small subunit pseudouridine synthase A [Finegoldia magna
ATCC 53516]
gi|297574915|gb|EFH93634.1| ribosomal small subunit pseudouridine synthase A [Finegoldia magna
ATCC 53516]
Length = 235
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 26 VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGT 85
VGRLD+ TTGL+I+TNDG FA + P + K+Y T+ V++++ T +G
Sbjct: 98 VGRLDLDTTGLLIITNDGKFAHNLISPKKDVSKKYKVTLRYKVDEKY-----NDTFEKGI 152
Query: 86 HCTPDVVELLPPQPDI-PRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPS 144
P+ + P +I + + EG+ H+V+ + + G ++ L+R++IG F+LP
Sbjct: 153 KLMPEDIITKPATMEIIDDYNCYLTIKEGKYHQVKRMFEKVGNEVVELQRVQIGSFKLPE 212
Query: 145 DLGIGMHVELKQSDLKLMGWKS 166
DL G EL +LK++G +
Sbjct: 213 DLEEGDFRELTDEELKILGLEE 234
>gi|168485953|ref|ZP_02710461.1| RNA pseudouridine synthase family protein [Streptococcus pneumoniae
CDC1087-00]
gi|418184074|ref|ZP_12820623.1| hypothetical protein SPAR91_0264 [Streptococcus pneumoniae GA47283]
gi|419509620|ref|ZP_14049265.1| pseudouridine synthase family protein [Streptococcus pneumoniae
NP141]
gi|421212323|ref|ZP_15669289.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070108]
gi|421214542|ref|ZP_15671477.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070109]
gi|183570820|gb|EDT91348.1| RNA pseudouridine synthase family protein [Streptococcus pneumoniae
CDC1087-00]
gi|353852543|gb|EHE32531.1| hypothetical protein SPAR91_0264 [Streptococcus pneumoniae GA47283]
gi|379634806|gb|EHZ99370.1| pseudouridine synthase family protein [Streptococcus pneumoniae
NP141]
gi|395582168|gb|EJG42631.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070108]
gi|395582895|gb|EJG43345.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
pneumoniae 2070109]
Length = 240
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TN+G A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNNGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +EG ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|358445181|ref|ZP_09155793.1| pseudouridylate synthase [Corynebacterium casei UCMA 3821]
gi|356608890|emb|CCE54035.1| pseudouridylate synthase [Corynebacterium casei UCMA 3821]
Length = 343
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD T GL+I+TNDG+ A + HP ++ K Y+AT+ G + R + + EG
Sbjct: 200 RLFHVGRLDADTEGLLILTNDGELANRLMHPKYEVSKTYLATVLGEADNRLIRTLKEGIE 259
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ D V+++ + IR+ +HEGR H VR ++K AG + L R +I +
Sbjct: 260 LDDGKAKADFVQVVDKNQGM--SLIRLELHEGRKHIVRRMLKAAGYPVQRLVRTKIHTVQ 317
Query: 142 L 142
L
Sbjct: 318 L 318
>gi|422824086|ref|ZP_16872274.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK405]
gi|422825839|ref|ZP_16874018.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK678]
gi|422856026|ref|ZP_16902684.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK1]
gi|422860650|ref|ZP_16907294.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK330]
gi|422865995|ref|ZP_16912620.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK1058]
gi|324993413|gb|EGC25333.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK405]
gi|324995275|gb|EGC27187.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK678]
gi|327461687|gb|EGF08018.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK1]
gi|327469033|gb|EGF14505.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK330]
gi|327489540|gb|EGF21333.1| ribosomal small subunit pseudouridine synthase A [Streptococcus
sanguinis SK1058]
Length = 241
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 8 LKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGA 67
L D + + + L+++GRLD T GL+++T++G + HP ++K Y ++G
Sbjct: 80 LTVLDLLDKEVEKENLYSIGRLDRDTEGLLLITDNGPLGFQLLHPQYHVEKTYYVEVNGP 139
Query: 68 VNKRHLIAISEGT-VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAG 126
+ + IA EG ++GT C P + + + R +RI EG+ H+++++ G
Sbjct: 140 LTPQDKIAFQEGIRFLDGTVCQPAQLTIFSSCFSLSRASVRI--SEGKFHQIKKMFLVVG 197
Query: 127 LKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+K+ LKR++ G F L DL G L Q +L+++
Sbjct: 198 VKIIYLKRIQFGNFTLDPDLATGDCRPLNQEELEII 233
>gi|298157411|gb|EFH98494.1| Pseudouridine synthase family protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 408
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++ +G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKNGVILKDGPARFTDIQQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRYGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|217970106|ref|YP_002355340.1| pseudouridine synthase [Thauera sp. MZ1T]
gi|217507433|gb|ACK54444.1| pseudouridine synthase [Thauera sp. MZ1T]
Length = 379
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 13 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH 72
+R P L + R VGRLD T+GL++ TNDGD A + HP +L++EY I G + +
Sbjct: 204 ERLPILRKGRWLAVGRLDFNTSGLLLFTNDGDLANKLMHPRYELEREYAVRILGELTEEQ 263
Query: 73 LIAISEGTVIEGTHCTPDVVELLPPQ-PDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYS 131
+ ++++G +E P LL + + R+ + EGRN EVR + + GL +
Sbjct: 264 VKSLTDGIQLED---GPAKFNLLRDEGGEGANHWYRVTISEGRNREVRRMFEAVGLTVSR 320
Query: 132 LKRLRIGGFRLPSDLGIGMHVELKQSD 158
L R+R G LP+ L GM +E+ +++
Sbjct: 321 LMRVRYGSVELPARLKRGMWMEMPEAE 347
>gi|423647498|ref|ZP_17623068.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD169]
gi|401285452|gb|EJR91291.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD169]
Length = 242
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF +GRLD T+G++++TNDGDFA + HP K++K Y+A I G + + + G
Sbjct: 94 RLFPIGRLDYDTSGVLLMTNDGDFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERGVT 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR-----LR 136
+E P V+ + +++ +HEGRN +VR + + K+ LKR L
Sbjct: 154 LEDGKTAPARVKTISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAFLE 213
Query: 137 IGGFRLPSD 145
+G R P D
Sbjct: 214 VGSLR-PGD 221
>gi|188587870|ref|YP_001919826.1| RNA pseudouridine synthase family protein [Clostridium botulinum E3
str. Alaska E43]
gi|188498151|gb|ACD51287.1| RNA pseudouridine synthase family protein [Clostridium botulinum E3
str. Alaska E43]
Length = 238
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 3/141 (2%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI- 82
F VGRLD T GL+++TNDGDF + P + K Y A ID VN++ A +G V+
Sbjct: 98 FPVGRLDKDTVGLLLLTNDGDFNHRMISPKWHVDKVYYAKIDKEVNEKDQEAFKKGVVLD 157
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C ++++ P+ +RI + EG+ H+V+ + + K+ LKR GG L
Sbjct: 158 DGYKCLEAKLDIISASPE--GSEVRITIQEGKYHQVKRMFEARDKKVVYLKREEFGGLIL 215
Query: 143 PSDLGIGMHVELKQSDLKLMG 163
L G + EL +L ++
Sbjct: 216 DETLEEGEYRELSDEELAILN 236
>gi|119952932|ref|YP_945141.1| ribosomal large subunit pseudouridine synthase B [Borrelia
turicatae 91E135]
gi|119861703|gb|AAX17471.1| ribosomal large subunit pseudouridine synthase B [Borrelia
turicatae 91E135]
Length = 247
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L + RLF++GRLD ++GL++ TNDG FA + HP SK++KEYI AVN+ LI
Sbjct: 102 LFKERLFSIGRLDFKSSGLLLFTNDGQFANNIVHPRSKVEKEYIVESKRAVNENLLINFK 161
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
G I G L + +++V+ EG+N E+R++ + + L + R+RI
Sbjct: 162 HGIKI-GREIFK-----LKSYVMLGNNSVKLVLTEGKNREIRKVFLSKNIFLKKIHRIRI 215
Query: 138 GGFRL 142
G +L
Sbjct: 216 GNIKL 220
>gi|291287278|ref|YP_003504094.1| pseudouridine synthase [Denitrovibrio acetiphilus DSM 12809]
gi|290884438|gb|ADD68138.1| pseudouridine synthase [Denitrovibrio acetiphilus DSM 12809]
Length = 229
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Query: 27 GRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGTH 86
GRLD + GLII +NDGDF + + K++KEYI T++ + K + + +G V EG
Sbjct: 100 GRLDYDSEGLIIFSNDGDFIRRLQRAEEKVEKEYIVTVNRVLKKGEMDDLRKGIVYEGIR 159
Query: 87 CTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDL 146
+VE R ++V+HEG+ ++R + +N G+++ LKR+RIG L ++L
Sbjct: 160 YRECIVE------QHSHDRYQVVLHEGKKRQIRHMFRNFGIRVKKLKRVRIGSVNL-NEL 212
Query: 147 GIGMHVELKQSDLKLM 162
G E +++ M
Sbjct: 213 QPGEFREFSPKEMREM 228
>gi|163939386|ref|YP_001644270.1| pseudouridine synthase [Bacillus weihenstephanensis KBAB4]
gi|229132378|ref|ZP_04261232.1| Pseudouridine synthase [Bacillus cereus BDRD-ST196]
gi|423486689|ref|ZP_17463371.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BtB2-4]
gi|423492413|ref|ZP_17469057.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
CER057]
gi|423500796|ref|ZP_17477413.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
CER074]
gi|423601087|ref|ZP_17577087.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD078]
gi|423667256|ref|ZP_17642285.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VDM034]
gi|423676711|ref|ZP_17651650.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VDM062]
gi|163861583|gb|ABY42642.1| pseudouridine synthase [Bacillus weihenstephanensis KBAB4]
gi|228651084|gb|EEL07065.1| Pseudouridine synthase [Bacillus cereus BDRD-ST196]
gi|401155082|gb|EJQ62496.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
CER074]
gi|401155897|gb|EJQ63304.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
CER057]
gi|401231633|gb|EJR38136.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD078]
gi|401304007|gb|EJS09565.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VDM034]
gi|401307832|gb|EJS13257.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VDM062]
gi|402438566|gb|EJV70575.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
BtB2-4]
Length = 242
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDG+FA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGEFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P +++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPAQAKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVMKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|449103181|ref|ZP_21739927.1| pseudouridine synthase [Treponema denticola AL-2]
gi|448965033|gb|EMB45698.1| pseudouridine synthase [Treponema denticola AL-2]
Length = 234
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD+ + G I+ TNDGDF+ V HPSS+++KEY L G
Sbjct: 99 RLYNIGRLDMLSGGAILFTNDGDFSAKVEHPSSEIEKEYEVITVFEYPDEVLQKFLRGVR 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG E I + ++RIV+ EG+N E+R ++K +K+ L R+RIG
Sbjct: 159 IEGVFYKALSAE------RIAKNKMRIVLIEGKNREIRRVLKFFNIKIKKLTRVRIGCVH 212
Query: 142 LPSDLGIGMHVELKQSDLK-LMG 163
L SDL G H L ++K L+G
Sbjct: 213 L-SDLPSGKHRPLTSEEIKGLLG 234
>gi|404496076|ref|YP_006720182.1| 23S rRNA pseudouridine 2605 synthase [Geobacter metallireducens
GS-15]
gi|418065503|ref|ZP_12702876.1| pseudouridine synthase [Geobacter metallireducens RCH3]
gi|78193687|gb|ABB31454.1| 23S rRNA pseudouridine 2605 synthase [Geobacter metallireducens
GS-15]
gi|373562243|gb|EHP88460.1| pseudouridine synthase [Geobacter metallireducens RCH3]
Length = 258
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD T GL+++TNDG++A ++HP ++ KEY+ + G V + + + +G
Sbjct: 97 RVFPVGRLDYNTEGLLLLTNDGEWANRLAHPRHEVDKEYLVRVRGTVAREQITRLEQGIE 156
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V + + + I +HEGR +VR + + L + L+R+R G
Sbjct: 157 LEDGKAAPARVSVTKQSDN--NTWVSITIHEGRYRQVRRMCEAVSLSVVRLRRVRYGALS 214
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
+ DL IG + L ++ +
Sbjct: 215 M-GDLKIGAYRHLTSGEVAAL 234
>gi|269467788|gb|EEZ79546.1| 16S rRNA uridine-516 pseudouridylate synthase [uncultured SUP05
cluster bacterium]
Length = 241
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 18 LPR-PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
LP+ R VGRLD+ T+GL++ TN+GD A + HPSS++++EY + G V L +
Sbjct: 92 LPKESRWVMVGRLDLNTSGLLLFTNNGDLANKLMHPSSEIEREYAVRVLGKVENEDLKQL 151
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
+EG +E V + Q ++V+ EG+ EVR L + G K+ L R+R
Sbjct: 152 TEGIDLEDGFAKFSRVTIGGGQG--ANRWYKVVLKEGKKREVRRLWEALGFKVSRLIRIR 209
Query: 137 IGGFRLPSDLGIGMHVELKQSDLK 160
G RLP L + LK ++
Sbjct: 210 FGEIRLPDSLRANQYEYLKSKQVQ 233
>gi|358464331|ref|ZP_09174296.1| pseudouridylate synthase [Streptococcus sp. oral taxon 058 str.
F0407]
gi|357067097|gb|EHI77227.1| pseudouridylate synthase [Streptococcus sp. oral taxon 058 str.
F0407]
Length = 241
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ +GRLD TTGL+ +T++G + HP + K Y ++G + H+ +G V
Sbjct: 94 QLYAIGRLDRDTTGLLFLTDNGPLGFQLLHPQYHVDKTYQVKVNGLLTPDHIQKFKDGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + EG+ H+V+++ + G+K+ SLKR++ G F
Sbjct: 154 FLDGTLCKPAKLEILSASP--TESHASITISEGKFHQVKKMFLSVGVKVTSLKRVQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L +L G L +L+++
Sbjct: 212 TLDPELAEGQFRPLNPEELEMI 233
>gi|146329607|ref|YP_001209391.1| ribosomal large subunit pseudouridine synthase, RluB [Dichelobacter
nodosus VCS1703A]
gi|146233077|gb|ABQ14055.1| ribosomal large subunit pseudouridine synthase, RluB [Dichelobacter
nodosus VCS1703A]
Length = 266
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + R +GRLD+ T+GL++ TNDG A + HPS+++++EY + G V + L A
Sbjct: 100 PKISHGRWVAIGRLDLNTSGLLLFTNDGALANQLMHPSAEIEREYWVRVAGEVTEEMLTA 159
Query: 76 ISEGTVI-EGTHCTPDVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ +G + +G ++ L D + + + EGRN EVR L + G K+ L
Sbjct: 160 LRQGIPLDDGLARFTEICPLKTLHEDDTQFNRYFSVTLKEGRNREVRRLWEAVGCKVSRL 219
Query: 133 KRLRIGGFRLPSDLGIGMH 151
KR+R G LP L G H
Sbjct: 220 KRIRYGTISLPPSLSAGRH 238
>gi|385331271|ref|YP_005885222.1| RNA-binding S4 domain-containing protein [Marinobacter adhaerens
HP15]
gi|311694421|gb|ADP97294.1| RNA-binding S4 domain protein [Marinobacter adhaerens HP15]
Length = 327
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R ++GRLD+ TTGL++ T DG+ A + HPS+++ +EY I G V+ +
Sbjct: 112 RLPRLKEHRWISIGRLDINTTGLVLFTTDGELANRLMHPSNQIDREYAVRIFGEVDDAKI 171
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ +G ++E ++ P + + EGRN EVR L ++ G+++ LK
Sbjct: 172 ERLLQGVLLEDGMAK--FTDISPAGGSGINRWFHVTLLEGRNREVRRLWESQGVRVSRLK 229
Query: 134 RLRIGGFRLPSDLGIGMHVELKQ 156
R+R G LPS L +G EL Q
Sbjct: 230 RVRYGPIFLPSRLTVGKWEELDQ 252
>gi|414160863|ref|ZP_11417126.1| pseudouridine synthase [Staphylococcus simulans ACS-120-V-Sch1]
gi|410876542|gb|EKS24440.1| pseudouridine synthase [Staphylococcus simulans ACS-120-V-Sch1]
Length = 244
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 71/121 (58%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+I+TNDG+F ++HP K++K+Y+A + G + + + + +G
Sbjct: 98 RIYPVGRLDYDTSGLLILTNDGEFTNLMTHPRYKIKKKYVAKLKGYLMRDEVKQLEKGIQ 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E P V++ + + I + EGRN +VR + ++ G ++ L R+ +GG
Sbjct: 158 LEDGKTHPAEVKIKNQDKEKNTTLVEITISEGRNRQVRRMFEHFGHEVTKLTRIEMGGLT 217
Query: 142 L 142
L
Sbjct: 218 L 218
>gi|449125633|ref|ZP_21761935.1| pseudouridine synthase [Treponema denticola OTK]
gi|448939602|gb|EMB20519.1| pseudouridine synthase [Treponema denticola OTK]
Length = 234
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD+ + G I+ TNDGDF+ V HPSS+++KEY L G
Sbjct: 99 RLYNIGRLDMLSGGAILFTNDGDFSAKVEHPSSEIEKEYEVITVFEYPDEVLQKFLRGVR 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG E I + ++RIV+ EG+N E+R ++K +K+ L R+RIG
Sbjct: 159 IEGVFYKALSAE------RISKNKMRIVLIEGKNREIRRVLKFFNIKIKKLTRVRIGCVH 212
Query: 142 LPSDLGIGMHVELKQSDLK-LMG 163
L SDL G H L ++K L+G
Sbjct: 213 L-SDLPSGKHRPLTSEEIKGLLG 234
>gi|424787263|ref|ZP_18214031.1| pseudouridine synthase family protein [Streptococcus intermedius
BA1]
gi|422114026|gb|EKU17744.1| pseudouridine synthase family protein [Streptococcus intermedius
BA1]
Length = 241
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV- 81
L++VGRLD T+GL+++T++G + HP + K Y ++G ++ + + +G V
Sbjct: 95 LYSVGRLDRNTSGLLLITDNGPLGFQLLHPQYHIAKTYEVEVNGLLDNQMIKTFQKGIVF 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++GT C P ++ + P+ + + + EG+ H+++++ G+K+ SLKR G F
Sbjct: 155 LDGTICKPALLTIHSSTPN--KSTATVTISEGKFHQIKKMFLTVGVKVISLKRTHFGAFE 212
Query: 142 LPSDLGIGMHVELKQSDLK 160
L +L G + L Q++L+
Sbjct: 213 LDQNLAAGEYRALNQTELE 231
>gi|70728994|ref|YP_258728.1| pseudouridine synthase [Pseudomonas protegens Pf-5]
gi|68343293|gb|AAY90899.1| pseudouridine synthase B, ribosomal large subunit [Pseudomonas
protegens Pf-5]
Length = 396
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 18 LPRPR---LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRPR +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 106 LPRPREGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 165
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ G ++E ++ P VV EGRN EVR L ++ GL + LKR
Sbjct: 166 RLKAGVMLEDGPAKFTDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKR 224
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+R G L SDL +G E+ Q ++ ++
Sbjct: 225 VRFGPVFLNSDLPMGRWREMSQYEVDVL 252
>gi|398837772|ref|ZP_10595061.1| pseudouridine synthase family protein [Pseudomonas sp. GM102]
gi|398118231|gb|EJM07970.1| pseudouridine synthase family protein [Pseudomonas sp. GM102]
Length = 421
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|335428817|ref|ZP_08555727.1| Pseudouridine synthase [Haloplasma contractile SSD-17B]
gi|335430799|ref|ZP_08557685.1| Pseudouridine synthase [Haloplasma contractile SSD-17B]
gi|334887339|gb|EGM25671.1| Pseudouridine synthase [Haloplasma contractile SSD-17B]
gi|334891758|gb|EGM30004.1| Pseudouridine synthase [Haloplasma contractile SSD-17B]
Length = 250
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYI 61
+L DYLK N G+ + R+F VGRLD TTG++++TNDGDFA ++ HP ++ K Y+
Sbjct: 84 TLVIDYLK-----NAGV-KERIFPVGRLDYDTTGVLLLTNDGDFANSLMHPRYEVNKTYL 137
Query: 62 ATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVREL 121
A + G K L + +G I G P V+++ I +V+HEG+ H+V+ +
Sbjct: 138 ARVKGIPQKHELTPLKKGVDIGGFKTAPAKVKVVRVDKKHNSALIELVIHEGKYHQVKRM 197
Query: 122 VKNAGLKLYSLKRLR 136
++ G + L+R R
Sbjct: 198 FESIGYPVKKLRRDR 212
>gi|419766869|ref|ZP_14293044.1| pseudouridylate synthase [Streptococcus mitis SK579]
gi|383353640|gb|EID31245.1| pseudouridylate synthase [Streptococcus mitis SK579]
Length = 241
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P + +L+ VGRLD TTGL+++T++G + HP + K Y ++G + H+ A
Sbjct: 88 PDIQSDKLYAVGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVYKTYRVEVNGLLTPDHIQA 147
Query: 76 ISEGTV-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+G V ++GT C P +E+L P + I I EG+ H+V+++ + G+K+ SLKR
Sbjct: 148 FQKGIVFLDGTVCKPARLEVLSASPSFSQASITI--SEGKFHQVKKMFLSVGVKVTSLKR 205
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDL 159
G + L +L G + L +L
Sbjct: 206 THFGPWSLDQNLQEGDYRPLNSQEL 230
>gi|421873116|ref|ZP_16304732.1| ribosomal large subunit pseudouridine synthase B [Brevibacillus
laterosporus GI-9]
gi|372458062|emb|CCF14281.1| ribosomal large subunit pseudouridine synthase B [Brevibacillus
laterosporus GI-9]
Length = 250
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+I+TNDG+ A ++HPS ++ K Y A + G + +++G
Sbjct: 96 RVYPVGRLDFDTSGLLIMTNDGELANRLAHPSFEMDKVYRAWVKGMPTSESVSRLAKGIK 155
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E +P +L R I + +HEGRN +VR + + G + +L+R+++ F
Sbjct: 156 LEDGMTSPGKARILERDVKKNRTLIELTIHEGRNRQVRRMCQAIGHPVITLQRIQV-SFL 214
Query: 142 LPSDLGIGMHVELKQSDLK 160
+LG+G + LK+ +++
Sbjct: 215 TLGNLGLGTYRLLKKEEVE 233
>gi|213965939|ref|ZP_03394129.1| ribosomal large subunit pseudouridine synthase B [Corynebacterium
amycolatum SK46]
gi|213951353|gb|EEB62745.1| ribosomal large subunit pseudouridine synthase B [Corynebacterium
amycolatum SK46]
Length = 324
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 6/123 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RLF VGRLD AT GL+++TNDG+ A + HPS ++ K Y+AT+ G V+ + + + +G
Sbjct: 181 RLFHVGRLDAATEGLLLLTNDGELANRLMHPSYEVTKTYMATVVGEVDSKVMRELEKGIE 240
Query: 82 IEGTHCTPDVVELLPPQPDIPRPR--IRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++ D+ +++ D+ + R +RI +HEGR H VR ++K AG + L R +I
Sbjct: 241 LDDGIAKADMAQII----DVWQGRSIVRIELHEGRKHIVRRMLKTAGFPVERLVRTKIHT 296
Query: 140 FRL 142
+L
Sbjct: 297 VQL 299
>gi|449130661|ref|ZP_21766880.1| pseudouridine synthase [Treponema denticola SP37]
gi|448941701|gb|EMB22601.1| pseudouridine synthase [Treponema denticola SP37]
Length = 234
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD+ + G I+ TNDGDF+ V HPSS+++KEY L G
Sbjct: 99 RLYNIGRLDMLSGGAILFTNDGDFSAKVEHPSSEIEKEYEVITVFEYPDEVLQKFLRGVR 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG E I + ++RIV+ EG+N E+R ++K +K+ L R+RIG
Sbjct: 159 IEGVFYKALSAE------RISKNKMRIVLIEGKNREIRRVLKFFNIKIKKLTRVRIGCVH 212
Query: 142 LPSDLGIGMHVELKQSDLK-LMG 163
L SDL G H L ++K L+G
Sbjct: 213 L-SDLPSGKHRPLTSEEIKGLLG 234
>gi|304406989|ref|ZP_07388643.1| pseudouridine synthase [Paenibacillus curdlanolyticus YK9]
gi|304343976|gb|EFM09816.1| pseudouridine synthase [Paenibacillus curdlanolyticus YK9]
Length = 445
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ +GRLD T GL+++TNDG+FA ++HP + K Y AT+ G + L + +G
Sbjct: 96 KQRVYPIGRLDYDTEGLLLLTNDGEFANLLTHPKHHVPKTYWATVKGVPHGDKLDKLRKG 155
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E +P VE +P IRI ++EGRN +VR + G + LKR++ G
Sbjct: 156 IELEDGMTSPAEVEYQDIEPSDKESTIRITIYEGRNRQVRRMFDAIGHPVIRLKRVKFG- 214
Query: 140 FRLPSDLGIGMHVELKQSDLKLMGWK 165
EL +LK GW+
Sbjct: 215 -------------ELGLQNLKRGGWR 227
>gi|398884728|ref|ZP_10639655.1| pseudouridine synthase family protein [Pseudomonas sp. GM60]
gi|398193708|gb|EJM80804.1| pseudouridine synthase family protein [Pseudomonas sp. GM60]
Length = 417
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|395795434|ref|ZP_10474740.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas sp.
Ag1]
gi|421144179|ref|ZP_15604098.1| pseudouridine synthase, Rsu [Pseudomonas fluorescens BBc6R8]
gi|395340387|gb|EJF72222.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas sp.
Ag1]
gi|404504664|gb|EKA18715.1| pseudouridine synthase, Rsu [Pseudomonas fluorescens BBc6R8]
Length = 415
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPARFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|169351006|ref|ZP_02867944.1| hypothetical protein CLOSPI_01783 [Clostridium spiroforme DSM 1552]
gi|169292068|gb|EDS74201.1| pseudouridylate synthase [Clostridium spiroforme DSM 1552]
Length = 241
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD TTGLII++NDG+FA + HP S L+K Y ++ G +N + L + +G
Sbjct: 92 KERIYPVGRLDFDTTGLIIMSNDGEFANMIMHPRSHLEKIYEVSVKGLINGQTLNKLEKG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+EG P ++++ + ++I + EG+N +V+++ ++ G + L R+ IG
Sbjct: 152 IYLEGVKTLPCKIKVVNKDIEHKTTMLKIKLVEGKNRQVKKMFESVGHPVKRLHRVSIGC 211
Query: 140 FRL 142
L
Sbjct: 212 VNL 214
>gi|333395818|ref|ZP_08477635.1| pseudouridylate synthase, 16S-rRNA-specific [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
gi|420146665|ref|ZP_14654056.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398401027|gb|EJN54539.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 241
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 1/144 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R LF VGRLD TTGL+ +TNDG A + P ++ K Y A I G V + G
Sbjct: 93 RADLFPVGRLDKDTTGLLFLTNDGQLAHQLLSPRRQVAKVYHALITGIVTAADQQRFAAG 152
Query: 80 -TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
T G P + +L P + +I + +HEG+ HEV+ L + ++ +L+R+ +G
Sbjct: 153 ITTKAGNEFAPADLRILAVDPVQQQSQIEVTLHEGKFHEVKRLFQAVSKEVLTLQRIEMG 212
Query: 139 GFRLPSDLGIGMHVELKQSDLKLM 162
G +L + L G + L +++ L+
Sbjct: 213 GLQLDTTLAAGAYRALTDAEITLL 236
>gi|403238133|ref|ZP_10916719.1| pseudouridine synthase [Bacillus sp. 10403023]
Length = 245
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T+GL+++TNDG+FA + HP ++ K Y+A I G +K L + G
Sbjct: 92 KERIYPVGRLDYDTSGLLLLTNDGEFANLLIHPKYEIDKVYVAKIKGIPSKEKLRQLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E P V+L+ I I +HEGRN +V+ + + G ++ LKR R G
Sbjct: 152 IKLEDGVTAPARVKLISMDKRKQTSIIEISIHEGRNRQVKRMFEAIGHQVMKLKRERFGF 211
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L L G + EL ++K +
Sbjct: 212 LTL-QGLHTGEYRELLPHEVKQL 233
>gi|398879728|ref|ZP_10634815.1| pseudouridine synthase family protein [Pseudomonas sp. GM67]
gi|398195692|gb|EJM82723.1| pseudouridine synthase family protein [Pseudomonas sp. GM67]
Length = 417
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|449117854|ref|ZP_21754269.1| pseudouridine synthase [Treponema denticola H-22]
gi|448949745|gb|EMB30569.1| pseudouridine synthase [Treponema denticola H-22]
Length = 234
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
RL+ +GRLD+ + G I+ TNDGDF+ V HPSS+++KEY L G
Sbjct: 99 RLYNIGRLDMLSGGAILFTNDGDFSAKVEHPSSEIEKEYEVITVFEYPDEILQKFLRGVR 158
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
IEG E I + ++RIV+ EG+N E+R ++K +K+ L R+RIG
Sbjct: 159 IEGVFYKALSAE------RISKNKMRIVLIEGKNREIRRVLKFFNIKIKKLTRVRIGCVH 212
Query: 142 LPSDLGIGMHVELKQSDLK-LMG 163
L SDL G H L ++K L+G
Sbjct: 213 L-SDLPSGKHRPLTSEEIKGLLG 234
>gi|410610775|ref|ZP_11321883.1| 23S rRNA pseudouridine2605 synthase [Glaciecola psychrophila 170]
gi|410169732|dbj|GAC35772.1| 23S rRNA pseudouridine2605 synthase [Glaciecola psychrophila 170]
Length = 285
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P + R VGRLD+ T+GL++ TNDG+ A + HP ++++EY + G V L
Sbjct: 91 RLPAIKNGRWIAVGRLDINTSGLLLFTNDGELANRLMHPKHEVEREYSVRVFGEVEDMML 150
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+++G +E + P + + + EGRN EVR L ++ GL++ L
Sbjct: 151 KRLTKGVQLEDGEAKFTEIVKKPGDEESQNTWYNVTLSEGRNREVRRLWESQGLQVSRLM 210
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L L G VEL DL +
Sbjct: 211 RVRYGTLELQKRLPQGGWVELGLPDLNTL 239
>gi|308069544|ref|YP_003871149.1| ribosomal large subunit pseudouridine synthase B (rRNA-uridine
isomerase B) [Paenibacillus polymyxa E681]
gi|305858823|gb|ADM70611.1| Ribosomal large subunit pseudouridine synthase B (rRNA-uridine
isomerase B) [Paenibacillus polymyxa E681]
Length = 252
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 3 LFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIA 62
+ DYLK + R++ VGRLD T GL+++TNDG+FA ++HP + K Y+A
Sbjct: 84 IVSDYLKGV--------KERVYPVGRLDYDTEGLLLLTNDGEFANLLTHPKHHVPKTYVA 135
Query: 63 TIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
T+ G + L + +G V+E P VE P+ I+I ++EGRN +VR +
Sbjct: 136 TVKGVPHGTELDKLKKGIVLEDGITAPAEVEYKDVDPNGKESVIQITIYEGRNRQVRRMF 195
Query: 123 KNAGLKLYSLKRLRIGGFRL 142
+ + LKR+ G L
Sbjct: 196 EAISHPVIRLKRIAFGDLLL 215
>gi|406670702|ref|ZP_11077947.1| pseudouridine synthase [Facklamia hominis CCUG 36813]
gi|405582218|gb|EKB56224.1| pseudouridine synthase [Facklamia hominis CCUG 36813]
Length = 243
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 67/113 (59%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD TTGL+++TNDGDFA + HP +++K YIA I G L +S+G +
Sbjct: 94 RIYPIGRLDFDTTGLLLLTNDGDFANRMMHPRFQVEKVYIAKIKGIPQVDALKRLSKGVM 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
++G + V+LL + + +HEG NH+V+++ + G + LKR
Sbjct: 154 VDGKLTSKANVKLLKQNASNQTAVVELTIHEGWNHQVKKMFEAIGHPVIKLKR 206
>gi|399046029|ref|ZP_10738566.1| pseudouridine synthase family protein [Brevibacillus sp. CF112]
gi|433544191|ref|ZP_20500581.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
gi|398055814|gb|EJL47864.1| pseudouridine synthase family protein [Brevibacillus sp. CF112]
gi|432184547|gb|ELK42058.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
Length = 239
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 26 VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGT 85
VGRLD+ T GL+++TNDG + ++ P K+ KEY A IDG V +RH+ ++G +E
Sbjct: 101 VGRLDIDTEGLLLLTNDGQLSHSLLSPKKKVDKEYFARIDGPVTERHVQEFAKGVELEDF 160
Query: 86 HCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSD 145
P +E+L +R+ + EG+ H+V+ + GL + L+R+R+G L
Sbjct: 161 TTLPAKLEILSSG---ETSEVRVTIMEGKFHQVKRMFAAFGLHVTYLQRIRMGPLHLDPA 217
Query: 146 LGIGMH 151
L G +
Sbjct: 218 LAPGEY 223
>gi|395217913|ref|ZP_10401802.1| pseudouridylate synthase [Pontibacter sp. BAB1700]
gi|394454806|gb|EJF09399.1| pseudouridylate synthase [Pontibacter sp. BAB1700]
Length = 336
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 7/141 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F +GRLD + GLI +TNDGD + +K +KEYI T+D +N+ + +S G
Sbjct: 100 RIFPIGRLDKDSEGLIFLTNDGDIVNKILRAGNKHEKEYIVTVDKPINEDFVQKMSSGVS 159
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
I G + VE L P + RI++ +G N ++R + + G ++ +L+R+RI
Sbjct: 160 ILGVNTKKCFVEQLGPN------KFRIILTQGMNRQIRRMTEALGYEVQTLQRVRIMNIT 213
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L + L +G EL +S++ ++
Sbjct: 214 L-AKLPLGQWRELTESEIDML 233
>gi|419765890|ref|ZP_14292115.1| S4 domain / pseudouridylate synthase multi-domain protein
[Streptococcus mitis SK579]
gi|383354644|gb|EID32199.1| S4 domain / pseudouridylate synthase multi-domain protein
[Streptococcus mitis SK579]
Length = 240
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S + +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDLARSKE----------VFPVGRLDIDTHGLLLLTNDGQLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + ++G ++ C P +E+L + + +IR+ + EG+ H+V+
Sbjct: 134 LAQVKGIMTQGDVETFAKGIPLKDFTCQPARLEILSADTEKNQSQIRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
+V G ++ L+RL +G L +L G L + +L+
Sbjct: 194 MVAYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELE 233
>gi|257482791|ref|ZP_05636832.1| pseudouridine synthase, Rsu, partial [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
Length = 241
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LPRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ L+
Sbjct: 107 LPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSFEMDREYAVRVRGEVDDDMLL 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKNGVILEDGPARFTDIQQ--APGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIG 149
R+R G L SDL +G
Sbjct: 225 RVRYGPVFLNSDLPMG 240
>gi|387126458|ref|YP_006295063.1| ribosomal large subunit pseudouridine synthase B [Methylophaga sp.
JAM1]
gi|386273520|gb|AFI83418.1| Ribosomal large subunit pseudouridine synthase B [Methylophaga sp.
JAM1]
Length = 306
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
LP P R +VGRLD+ T+GLII+T DG+ A + HPS+++ +EY + G V +
Sbjct: 94 LPAPEDGRWVSVGRLDLNTSGLIILTTDGELANQLMHPSNEMDREYAVRVLGEVTSEMMQ 153
Query: 75 AISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+ +G +E ++ P + +V+ EGRN EVR L ++ G+++ L R
Sbjct: 154 TLRDGVELEDGKA--HFSDIQPGGGEGANSWFHVVIQEGRNREVRRLWESQGVQVSRLVR 211
Query: 135 LRIGGFRLPSDLGIGMHVELKQSDLKLM 162
LR G +P+ L G + L+ +L+ +
Sbjct: 212 LRYGPVIMPNKLKPGRWMMLEGKELEFL 239
>gi|419782932|ref|ZP_14308729.1| pseudouridylate synthase [Streptococcus oralis SK610]
gi|383182858|gb|EIC75407.1| pseudouridylate synthase [Streptococcus oralis SK610]
Length = 240
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 80/140 (57%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
+F VGRLD+ T GL+++TN+G A A+ P + K Y+A ++G++++ + ++G +
Sbjct: 96 VFPVGRLDIDTHGLLLLTNNGQLAHALLSPKRHVDKTYLAQVEGSMSQEDVDTFAKGIPL 155
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+ C P +E+L ++R+ + EG+ H+V+ +V G ++ L+RL +G L
Sbjct: 156 KDFTCQPAKLEILSVDSYKDESQVRVTIREGKFHQVKRMVAYCGKEVVDLQRLAMGTLVL 215
Query: 143 PSDLGIGMHVELKQSDLKLM 162
+L G L + +L+++
Sbjct: 216 DENLKRGEWRRLTKEELEVL 235
>gi|254525039|ref|ZP_05137094.1| pseudouridylate synthase [Stenotrophomonas sp. SKA14]
gi|219722630|gb|EED41155.1| pseudouridylate synthase [Stenotrophomonas sp. SKA14]
Length = 546
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATI-----DGAVNK 70
P L R +GRLD+ TTGL++ T DG+ A A+ HPS ++++EY+ + + V+
Sbjct: 114 PPLKGARWIAIGRLDINTTGLLLATTDGELANAMMHPSFEVEREYVVRVRAPEGEEKVSD 173
Query: 71 RHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLY 130
+ +S G +E D +E + R+VV EGRN EVR L ++ G ++
Sbjct: 174 AIVDRLSRGVALEDGPAKFDEIERIGGTDS--HDWFRVVVKEGRNREVRRLWESQGCQVS 231
Query: 131 SLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
LKR R G LP +L G VEL + ++ +
Sbjct: 232 RLKRTRYGKVSLPRELARGHSVELGTAQVEAL 263
>gi|229166414|ref|ZP_04294170.1| Pseudouridine synthase [Bacillus cereus AH621]
gi|423516232|ref|ZP_17492713.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuA2-4]
gi|423594500|ref|ZP_17570531.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD048]
gi|228616988|gb|EEK74057.1| Pseudouridine synthase [Bacillus cereus AH621]
gi|401165138|gb|EJQ72457.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
HuA2-4]
gi|401224297|gb|EJR30855.1| ribosomal large subunit pseudouridine synthase B [Bacillus cereus
VD048]
Length = 242
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
R RLF +GRLD T+G++++TNDG+FA + HP K++K Y+A I G + + + G
Sbjct: 92 RQRLFPIGRLDYDTSGVLLMTNDGEFANVLMHPRYKVEKTYVAKIKGPLTGEKIRMLERG 151
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR----- 134
+E P +++ +++ +HEGRN +VR + + K+ LKR
Sbjct: 152 VALEDGKTAPAQAKIISWDKRKEMAIVQLTIHEGRNRQVRRMFEALDCKVVKLKRERYAF 211
Query: 135 LRIGGFRLPSD 145
L +G R P D
Sbjct: 212 LEVGSLR-PGD 221
>gi|398903607|ref|ZP_10651768.1| pseudouridine synthase family protein [Pseudomonas sp. GM50]
gi|398176848|gb|EJM64550.1| pseudouridine synthase family protein [Pseudomonas sp. GM50]
Length = 421
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDVL 253
>gi|423070844|ref|ZP_17059620.1| hypothetical protein HMPREF9177_00937 [Streptococcus intermedius
F0413]
gi|355364938|gb|EHG12665.1| hypothetical protein HMPREF9177_00937 [Streptococcus intermedius
F0413]
Length = 241
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV- 81
L++VGRLD T+GL+++T++G + HP + K Y ++G ++ + + +G V
Sbjct: 95 LYSVGRLDRDTSGLLLITDNGPLGFQLLHPQYHIAKTYEVEVNGLLDNQMIKTFQKGIVF 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++GT C P ++ + P+ + + + EG+ H+++++ G+K+ SLKR G F
Sbjct: 155 LDGTICKPALLTIHSSTPN--KSTATVTISEGKFHQIKKMFLTVGVKVISLKRTHFGAFE 212
Query: 142 LPSDLGIGMHVELKQSDLK 160
L +L G + L Q++L+
Sbjct: 213 LDQNLAAGEYRALNQTELE 231
>gi|399889654|ref|ZP_10775531.1| ribosomal large subunit pseudouridine synthase B [Clostridium
arbusti SL206]
Length = 237
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R+F +GRLD T+GL+I+TNDGD V HP K+ K Y ATI G +K + G
Sbjct: 94 KERIFPIGRLDYDTSGLLIMTNDGDVYNKVIHPGKKINKVYEATIKGVPSKEEIKKFCIG 153
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
I P +++ D R++I +HEG+ ++R + K + +L+R+ +G
Sbjct: 154 IDIGNYITAPANFKIIDSNRD--ECRVKITIHEGKKRQIRRMCKAIMHPVITLRRISVGE 211
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L SDL G L ++++ +
Sbjct: 212 IILSSDLKKGQWRYLNDTEIQYL 234
>gi|423093950|ref|ZP_17081746.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
fluorescens Q2-87]
gi|397888432|gb|EJL04915.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
fluorescens Q2-87]
Length = 411
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPARFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|315283394|ref|ZP_07871600.1| ribosomal small subunit pseudouridine synthase A [Listeria marthii
FSL S4-120]
gi|313612966|gb|EFR86902.1| ribosomal small subunit pseudouridine synthase A [Listeria marthii
FSL S4-120]
Length = 233
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 24 FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI- 82
F VGRLD T GL+I+TNDG A + P + K Y A IDG V + A + G +
Sbjct: 97 FPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTATDVEAFAAGIELD 156
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G C P +E++ P I++ + EG+ H+V+ + G + LKR+ +G +L
Sbjct: 157 DGYTCKPARLEIITPN------EIKVTIQEGKFHQVKRMFAARGKTVSYLKRISMGNLQL 210
Query: 143 PSDLGIGMHVELKQSDLKLMGWK 165
L +G + L +++L ++ K
Sbjct: 211 DESLELGEYRPLTETELAILQNK 233
>gi|416868773|ref|ZP_11916237.1| putative pseudouridine synthase, partial [Pseudomonas aeruginosa
138244]
gi|334833255|gb|EGM12391.1| putative pseudouridine synthase [Pseudomonas aeruginosa 138244]
Length = 313
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 1/149 (0%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V + +
Sbjct: 103 RLPRLRTGRWINVGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVTEEMI 162
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G ++E ++ P VV EGRN EVR L ++ GL + LK
Sbjct: 163 ERLLNGVMLEDGPAKFSDIQQAPGGEGFNHW-YHCVVMEGRNREVRRLWESQGLVVSRLK 221
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L S+L +G + E+ Q ++ ++
Sbjct: 222 RVRFGPVFLTSELTMGRYREMDQREIDIL 250
>gi|302380106|ref|ZP_07268580.1| pseudouridylate synthase [Finegoldia magna ACS-171-V-Col3]
gi|302312092|gb|EFK94099.1| pseudouridylate synthase [Finegoldia magna ACS-171-V-Col3]
Length = 235
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 26 VGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGT 85
VGRLD+ TTGL+I+TNDG FA + P + K+Y T+ V++++ T +G
Sbjct: 98 VGRLDLDTTGLLIITNDGKFAHNLISPKKDVSKKYKVTLRDKVDEKY-----NDTFEKGI 152
Query: 86 HCTPDVVELLPPQPD-IPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPS 144
P+ + P + I + + EG+ H+V+ + + G ++ L+R++IG F+LP
Sbjct: 153 KLMPEDIVTKPATMEIIDDYNCYLTIKEGKYHQVKRMFEKVGNEVVELQRVQIGDFKLPE 212
Query: 145 DLGIGMHVELKQSDLKLMGWKS 166
DL G EL +L+++G +
Sbjct: 213 DLEEGDFRELTDEELRILGLEE 234
>gi|392955714|ref|ZP_10321244.1| pseudouridine synthase Rsu [Bacillus macauensis ZFHKF-1]
gi|391877956|gb|EIT86546.1| pseudouridine synthase Rsu [Bacillus macauensis ZFHKF-1]
Length = 249
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L R+F VGRLD T+G++I+TNDG FA + HP K+ K YIA + G + L +
Sbjct: 91 LIEQRVFPVGRLDYDTSGVLIMTNDGMFANELMHPKYKVDKTYIAKVKGIPTREALKKLE 150
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
G V+E P V+ + I +++HEGRN +VR + + G + LKR R
Sbjct: 151 HGIVLEDGKTAPARVKFISGDRKKQTAIIELIIHEGRNRQVRRMFEAIGHPVMKLKRER 209
>gi|430750113|ref|YP_007213021.1| pseudouridine synthase family protein [Thermobacillus composti
KWC4]
gi|430734078|gb|AGA58023.1| pseudouridine synthase family protein [Thermobacillus composti
KWC4]
Length = 246
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ VGRLD T GL+IVTNDGDFA ++HPS + + Y A + G + L ++ G
Sbjct: 93 KERVYPVGRLDYDTEGLLIVTNDGDFANKLTHPSGHIPRTYHAVVKGIPHGTLLEKLAAG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++ P VE D I I ++EGRN +VR + + G + L+R+R G
Sbjct: 153 INLDDGMTAPAEVEYRDVDMDKSEATIEITLYEGRNRQVRRMFEAIGHPVKRLRRVRFGS 212
Query: 140 FRLPSDLGIGMHVELKQSDLKLM 162
L + G + ELK ++K +
Sbjct: 213 LTL-QGIPRGKYRELKPEEVKAL 234
>gi|312132030|ref|YP_003999370.1| RNA-binding s4 domain-containing protein [Leadbetterella byssophila
DSM 17132]
gi|311908576|gb|ADQ19017.1| RNA-binding S4 domain protein [Leadbetterella byssophila DSM 17132]
Length = 500
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD ATTGL++ TNDG+ A+ +SHPS++++K Y ID + K + EG
Sbjct: 361 RIYPVGRLDRATTGLLLFTNDGELAEKLSHPSNEIRKIYQVEIDKPLAKEDFEKLIEGVE 420
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+E PD V ++ P + I I +H G+N VR + ++ G ++ L R G
Sbjct: 421 LEDGFIKPDQVSIVTPDQQV----IGIEIHSGKNRVVRRIFEHLGYEVTQLDRTTYAG 474
>gi|398945260|ref|ZP_10671681.1| pseudouridine synthase family protein [Pseudomonas sp. GM41(2012)]
gi|398157161|gb|EJM45563.1| pseudouridine synthase family protein [Pseudomonas sp. GM41(2012)]
Length = 432
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|256822107|ref|YP_003146070.1| RNA-binding S4 domain-containing protein [Kangiella koreensis DSM
16069]
gi|256795646|gb|ACV26302.1| RNA-binding S4 domain protein [Kangiella koreensis DSM 16069]
Length = 267
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P R ++GRLD+ TTGL++ TN+G+ A + HPS +++++Y + G V +
Sbjct: 94 PNTSFGRWISIGRLDINTTGLLLFTNNGELAHRLMHPSYQVERKYAVRVHGEVTPEMISN 153
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+++G +IEG C V+ + + + EG+N EVR+L ++ G+++ L R+
Sbjct: 154 LTKGVLIEGDTCQFTYVQ--DKGGEGANHWYEVGLAEGKNREVRKLWESQGVEVSRLMRV 211
Query: 136 RIGGFRLPSDLGIGMHVELKQSDL 159
+ G LP+ L G V+L++ ++
Sbjct: 212 QYGPISLPTRLSRGRWVDLEEQEI 235
>gi|418165912|ref|ZP_12802570.1| hypothetical protein SPAR52_0332 [Streptococcus pneumoniae GA17971]
gi|353832007|gb|EHE12130.1| hypothetical protein SPAR52_0332 [Streptococcus pneumoniae GA17971]
Length = 240
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A + P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + + +E ++ C P ++EL+ + + +IR+ + EG+ H+++
Sbjct: 134 LAQVKGIMTQEDVETFAESIPLKDFTCQPAILELVSIDTEKNQSQIRVTIAEGKFHQIKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L +L G L + +L+++
Sbjct: 194 MVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEIL 235
>gi|398861413|ref|ZP_10617042.1| pseudouridine synthase family protein [Pseudomonas sp. GM79]
gi|398233074|gb|EJN19018.1| pseudouridine synthase family protein [Pseudomonas sp. GM79]
Length = 421
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|358450451|ref|ZP_09160914.1| RNA-binding S4 domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357225382|gb|EHJ03884.1| RNA-binding S4 domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 327
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R ++GRLD+ TTGL++ T DG+ A + HPS+++ +EY I G V+ +
Sbjct: 112 RLPRLKEHRWISIGRLDINTTGLVLFTTDGELANRLMHPSNQIDREYAVRIFGEVDDAMI 171
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ +G ++E ++ P + + EGRN EVR L ++ G+++ LK
Sbjct: 172 ERLLQGVLLEDGMAK--FTDISPAGGSGINRWFHVTLLEGRNREVRRLWESQGVRVSRLK 229
Query: 134 RLRIGGFRLPSDLGIGMHVELKQ 156
R+R G LPS L +G EL Q
Sbjct: 230 RVRYGPIFLPSRLTVGKWEELDQ 252
>gi|336393743|ref|ZP_08575142.1| pseudouridylate synthase, 16S-rRNA-specific [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
Length = 241
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 7/158 (4%)
Query: 6 DYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID 65
D L + D+R LF VGRLD TTGL+ +TNDG A + P ++ K Y A I
Sbjct: 85 DLLAATDQRAD------LFPVGRLDKDTTGLLFLTNDGQLAHQLLSPRRQVVKIYRALIA 138
Query: 66 GAVNKRHLIAISEG-TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKN 124
G V + G T G P + +L P + +I + +HEG+ HEV+ L +
Sbjct: 139 GIVTAADQQRFAAGITTKAGNEFAPADLRILAVDPVQQQSQIEVTLHEGKFHEVKRLFQA 198
Query: 125 AGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
++ +L+R+ +GG +L + L G++ L +++ L+
Sbjct: 199 VSKEVLTLQRIEMGGLQLDTTLAAGVYRALTDAEITLL 236
>gi|398816406|ref|ZP_10575056.1| pseudouridine synthase family protein [Brevibacillus sp. BC25]
gi|398032641|gb|EJL25974.1| pseudouridine synthase family protein [Brevibacillus sp. BC25]
Length = 246
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 74/121 (61%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ VGRLD T+GL+++TNDG+ A ++HPS ++ K Y A + G ++ + ++ G
Sbjct: 95 RVYPVGRLDYDTSGLLLLTNDGELANRLAHPSYEIDKVYRAWVKGIPSQEKVRKLATGIR 154
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E +P +LL + + + + +++HEGRN +VR + + G + +L+R+R+G
Sbjct: 155 LEDGMTSPGQSKLLKTESNSQKALVELIIHEGRNRQVRRMCEAIGHPVLTLERIRLGFLT 214
Query: 142 L 142
L
Sbjct: 215 L 215
>gi|417936920|ref|ZP_12580226.1| pseudouridylate synthase [Streptococcus infantis X]
gi|343399362|gb|EGV11884.1| pseudouridylate synthase [Streptococcus infantis X]
Length = 240
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 10/162 (6%)
Query: 1 MSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEY 60
+ L DD +S +F VGRLD+ T GL+++TNDG A A+ P + K Y
Sbjct: 84 LDLLDDLARS----------KEVFPVGRLDIDTHGLLLLTNDGKLAHALLSPKRHVDKTY 133
Query: 61 IATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRE 120
+A + G + + ++G ++ C P +EL+ + + +R+ + EG+ H+V+
Sbjct: 134 LAQVKGIMTDADVEVFAQGIPLKDFTCQPAKLELVSLDTEENQSLVRVTIAEGKFHQVKR 193
Query: 121 LVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
+V G ++ L+RL +G L DL G L +++L+ +
Sbjct: 194 MVAYCGKEVVDLQRLTMGTLTLDEDLKRGEWRRLTKNELEAL 235
>gi|407365712|ref|ZP_11112244.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
mandelii JR-1]
Length = 432
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPAKFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|340354845|ref|ZP_08677542.1| ribosomal large subunit pseudouridine synthase B [Sporosarcina
newyorkensis 2681]
gi|339622991|gb|EGQ27501.1| ribosomal large subunit pseudouridine synthase B [Sporosarcina
newyorkensis 2681]
Length = 272
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD T+G++++TNDGDF+ ++HP ++QK Y+A + G + +L + G
Sbjct: 123 RIFPVGRLDYDTSGVLLLTNDGDFSYLMTHPKFEIQKRYVAKVKGIPTRENLKKLETGIE 182
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+E P V++ + I +HEGRN +VR + G + LKR
Sbjct: 183 LEDGKTAPAQVKMTTVDKKTNSAIVEITIHEGRNRQVRRMFDAIGCPVQKLKR 235
>gi|330811302|ref|YP_004355764.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|423698861|ref|ZP_17673351.1| pseudouridine synthase B, ribosomal large subunit [Pseudomonas
fluorescens Q8r1-96]
gi|327379410|gb|AEA70760.1| Ribosomal large subunit pseudouridine synthase B [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387996296|gb|EIK57626.1| pseudouridine synthase B, ribosomal large subunit [Pseudomonas
fluorescens Q8r1-96]
Length = 411
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPARFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|81428635|ref|YP_395635.1| pseudouridylate synthase [Lactobacillus sakei subsp. sakei 23K]
gi|78610277|emb|CAI55326.1| Pseudouridylate synthase, 16SrRNA-specific [Lactobacillus sakei
subsp. sakei 23K]
Length = 256
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEG 79
+ R++ +GRLD T+GL+++TNDGDFA + HP K+ K Y+A + G L + +G
Sbjct: 93 QERVYPIGRLDYDTSGLLLLTNDGDFANMMMHPKYKVDKTYVAKVSGLPTAEMLRQLRKG 152
Query: 80 TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
++E P V+++ + I +HEG NH+V+ ++ GL + LKR G
Sbjct: 153 IMLEKRKTAPAKVKIISTDRRKNTAILSITIHEGMNHQVKNMLAAVGLPVSKLKRETYGF 212
Query: 140 FRL 142
L
Sbjct: 213 LTL 215
>gi|378952422|ref|YP_005209910.1| ribosomal large subunit pseudouridine synthase B [Pseudomonas
fluorescens F113]
gi|359762436|gb|AEV64515.1| Ribosomal large subunit pseudouridine synthase B [Pseudomonas
fluorescens F113]
Length = 411
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 18 LPRP---RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLI 74
+PRP R +GRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V+ +
Sbjct: 107 MPRPKEGRWINIGRLDINTTGLLMFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIE 166
Query: 75 AISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ G V+E G D+ + P + VV EGRN EVR L ++ GL + LK
Sbjct: 167 RLKAGVVLEDGPARFTDIKQA--PGGEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLK 224
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R+R G L SDL +G E+ Q ++ ++
Sbjct: 225 RVRFGPVFLNSDLPMGRWREMSQYEVDIL 253
>gi|417915108|ref|ZP_12558730.1| putative 16S pseudouridylate 516 synthase [Streptococcus mitis bv.
2 str. SK95]
gi|342835369|gb|EGU69618.1| putative 16S pseudouridylate 516 synthase [Streptococcus mitis bv.
2 str. SK95]
Length = 241
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L+ +GRLD TTGL+++T++G + HP + K Y ++G ++ H+ +G V
Sbjct: 94 QLYAIGRLDRDTTGLLLLTDNGPLGFQLLHPQYHVDKTYQVKVNGPLSSDHIQKFKDGIV 153
Query: 82 -IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
++GT C P +E+L P I + EG+ H+V+++ + G+K+ +LKR++ G F
Sbjct: 154 FLDGTLCKPAKLEILDSSPS--ENHASITISEGKFHQVKKMFLSVGVKVTALKRVQFGDF 211
Query: 141 RLPSDLGIGMHVELKQSDLKLM 162
L +L G L +L+++
Sbjct: 212 TLDPELAEGQFRPLNPEELEII 233
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,792,070,574
Number of Sequences: 23463169
Number of extensions: 113991152
Number of successful extensions: 288323
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7987
Number of HSP's successfully gapped in prelim test: 596
Number of HSP's that attempted gapping in prelim test: 273139
Number of HSP's gapped (non-prelim): 8752
length of query: 166
length of database: 8,064,228,071
effective HSP length: 127
effective length of query: 39
effective length of database: 9,379,372,904
effective search space: 365795543256
effective search space used: 365795543256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)