BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031054
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O67444|Y1464_AQUAE Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex
aeolicus (strain VF5) GN=aq_1464 PE=3 SV=1
Length = 249
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R+F VGRLD T GL+I+TNDG+ A + HP KL K Y+A ++G V+++ L + +G
Sbjct: 98 RVFPVGRLDYNTEGLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIE 157
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E PD + ++ + + + I HEGR H V+ + G K+ LKR+ IG +
Sbjct: 158 LEDGFAKPDNIRIV--RYEGKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIK 215
Query: 142 LPSDLGIGMHVELKQSDL 159
L L G EL Q +L
Sbjct: 216 L-GKLSPGKWRELNQGEL 232
>sp|P57369|RLUB_BUCAI Ribosomal large subunit pseudouridine synthase B OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rluB PE=3 SV=1
Length = 250
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIA 75
P L R ++GRLD+ T GL++ TN+G+ A + HPS+K+++EY + G +NK +
Sbjct: 95 PLLNIHRWISIGRLDINTRGLLLFTNNGNLANELMHPSNKIEREYYIRVFGKINKNTMNI 154
Query: 76 ISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRL 135
+ G I+ + ++ + + V+ EGRN E+R + + ++ L R+
Sbjct: 155 LKNGVKIKDGNAAFKSIQTIDHACSKKNKWFKGVLCEGRNREIRSMWQAVQCQVSRLIRI 214
Query: 136 RIGGFRLPSDLGIGMHVEL 154
R G LP +L +G EL
Sbjct: 215 RYGNIFLPKNLKLGDWSEL 233
>sp|O66829|Y554_AQUAE Uncharacterized RNA pseudouridine synthase aq_554 OS=Aquifex
aeolicus (strain VF5) GN=aq_554 PE=3 SV=1
Length = 238
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
P +LF+ GRLDV GL+++T+DG+ A ++HP K++KEYI +D + L +
Sbjct: 91 FPSRKLFSAGRLDVDAEGLLLITDDGELAHRLTHPKWKVEKEYIVRLDRDIGDEELKKLY 150
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
E + E V+L+ + + ++ ++ EGR+H V+ L K G + LKR R+
Sbjct: 151 EVKLEEKP------VQLVKAEK-LSGDTVKAILTEGRHHVVKRLFKAVGHNVVYLKRTRV 203
Query: 138 GGFRLPSDLGIGMHVELKQSDLK 160
G RL ++ G EL + ++K
Sbjct: 204 GNLRLDENMEPGEWRELTEEEVK 226
>sp|Q9HZ55|RLUB_PSEAE Ribosomal large subunit pseudouridine synthase B OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluB PE=3 SV=1
Length = 386
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R VGRLD+ TTGL++ T DG+ A + HPS ++ +EY + G V + + + G +
Sbjct: 111 RWINVGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVM 170
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
+E ++ P VV EGRN EVR L ++ GL + LKR+R G
Sbjct: 171 LEDGPAKFSDIQQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVF 229
Query: 142 LPSDLGIGMHVELKQSDLKLM 162
L S+L +G + E+ Q ++ ++
Sbjct: 230 LTSELTMGRYREMDQREIDIL 250
>sp|O51155|Y129_BORBU Uncharacterized RNA pseudouridine synthase BB_0129 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=BB_0129 PE=3 SV=1
Length = 249
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 69/127 (54%), Gaps = 6/127 (4%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
L + R+F++GRLD ++GL++ TNDG FA + HP K+++EYI +++ LI+
Sbjct: 100 LFKERVFSIGRLDFKSSGLLLFTNDGKFANDIIHPRQKVEREYIIESKKDIDENLLISFK 159
Query: 78 EGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
G ++ E+L R+++ EG+N E+R++ + + L + R+RI
Sbjct: 160 SGIKVKKEFFKLKSYEILNKNS------ARLILDEGKNREIRKVFLSKNIFLKKIHRIRI 213
Query: 138 GGFRLPS 144
G L S
Sbjct: 214 GNINLDS 220
>sp|P42395|RLUB_BUCAP Ribosomal large subunit pseudouridine synthase B OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluB PE=3 SV=2
Length = 257
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 4 FDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIAT 63
F L +DK P L R +VGRLD+ T GL++ TNDG A + HP S++++EY
Sbjct: 84 FQKRLTVFDKL-PKLNLNRWVSVGRLDINTKGLLLFTNDGTLANKLMHPRSQIEREYNIR 142
Query: 64 IDGAVNKRHLIAISEGT-VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELV 122
I G +NK + + +G +I G ++V L + + ++ EG+N E+R +
Sbjct: 143 IFGEMNKNKINILRKGVKIIHGYVSFKEIVPLYDKKEG-KNKWFKGILCEGKNREIRLMF 201
Query: 123 KNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLK 160
K+ ++ L R+R G LP +L G + L LK
Sbjct: 202 KSIQCQVNQLIRVRYGNIILPKNLKEGQWMMLNSIFLK 239
>sp|P35159|RLUB_BACSU Ribosomal large subunit pseudouridine synthase B OS=Bacillus
subtilis (strain 168) GN=rluB PE=1 SV=2
Length = 244
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
R++ +GRLD T+GL+++TNDG+FA + HP ++ K Y+A + G K L + G
Sbjct: 94 RIYPIGRLDYDTSGLLLLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIR 153
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKR 134
+E P +LL I++ +HEGRN +VR + + G ++ LKR
Sbjct: 154 LEEGKTAPAKAKLLSLDKKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKR 206
>sp|Q8PQN3|RLUE_XANAC Ribosomal large subunit pseudouridine synthase E OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluE PE=3 SV=2
Length = 190
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
GLP P ++ GRLD + GL+++T+DG A ++ P K K Y ++GA HL A+
Sbjct: 30 GLP-PDVYAAGRLDHDSEGLLVLTDDGALAHRLTDPRHKQPKTYWVQVEGAPQAEHLQAL 88
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDI-PR-PRIRI-----------VVHEGRNHEVRELVK 123
+G + P V +L P P + PR P +R+ + EGRN +VR +
Sbjct: 89 RDGVALNDGPTRPAQVRMLDPAPQLWPRDPPVRVRKTVPDAWLELQITEGRNRQVRRMTA 148
Query: 124 NAGLKLYSLKRLRIGGFRL 142
GL L R+ IG +RL
Sbjct: 149 AVGLPTLRLVRVAIGDWRL 167
>sp|P0AA46|RSUA_SHIFL Ribosomal small subunit pseudouridine synthase A OS=Shigella
flexneri GN=rsuA PE=3 SV=1
Length = 231
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L GRLD+ TTGL+++T+DG ++ ++ P +K Y+ T++ V ++G
Sbjct: 94 KLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQ 153
Query: 82 I--EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ E P V+E++ P ++R+ + EGR H+V+ + G + L R RIGG
Sbjct: 154 LHNEKDLTKPAVLEVITPT------QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGG 207
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L +DL G + L + ++
Sbjct: 208 ITLDADLAPGEYRPLTEEEI 227
>sp|P0AA43|RSUA_ECOLI Ribosomal small subunit pseudouridine synthase A OS=Escherichia
coli (strain K12) GN=rsuA PE=1 SV=1
Length = 231
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L GRLD+ TTGL+++T+DG ++ ++ P +K Y+ T++ V ++G
Sbjct: 94 KLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQ 153
Query: 82 I--EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ E P V+E++ P ++R+ + EGR H+V+ + G + L R RIGG
Sbjct: 154 LHNEKDLTKPAVLEVITPT------QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGG 207
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L +DL G + L + ++
Sbjct: 208 ITLDADLAPGEYRPLTEEEI 227
>sp|P0AA44|RSUA_ECOL6 Ribosomal small subunit pseudouridine synthase A OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsuA
PE=3 SV=1
Length = 231
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L GRLD+ TTGL+++T+DG ++ ++ P +K Y+ T++ V ++G
Sbjct: 94 KLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQ 153
Query: 82 I--EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ E P V+E++ P ++R+ + EGR H+V+ + G + L R RIGG
Sbjct: 154 LHNEKDLTKPAVLEVITPT------QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGG 207
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L +DL G + L + ++
Sbjct: 208 ITLDADLAPGEYRPLTEEEI 227
>sp|P0AA45|RSUA_ECO57 Ribosomal small subunit pseudouridine synthase A OS=Escherichia
coli O157:H7 GN=rsuA PE=3 SV=1
Length = 231
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L GRLD+ TTGL+++T+DG ++ ++ P +K Y+ T++ V ++G
Sbjct: 94 KLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQ 153
Query: 82 I--EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ E P V+E++ P ++R+ + EGR H+V+ + G + L R RIGG
Sbjct: 154 LHNEKDLTKPAVLEVITPT------QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGG 207
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L +DL G + L + ++
Sbjct: 208 ITLDADLAPGEYRPLTEEEI 227
>sp|Q8ZGM2|RSUA_YERPE Ribosomal small subunit pseudouridine synthase A OS=Yersinia pestis
GN=rsuA PE=3 SV=1
Length = 235
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L GRLD+ TTGL+++T+DG ++ V+ P +K Y+ T++ ++ ++G
Sbjct: 94 KLHAAGRLDIDTTGLVLMTDDGQWSHRVTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQ 153
Query: 82 I--EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ E + P ++++ PQ R+R+ + EGR H+V+ + G ++ L R RIG
Sbjct: 154 LYNEKSLTKPAQLDVIEPQ------RVRLTISEGRYHQVKRMFAAVGNRVIELHRERIGD 207
Query: 140 FRLPSDLGIGMHVELKQSDLKLMG 163
L DL G + L ++ +G
Sbjct: 208 ITLDDDLAPGEYRPLTTEEIASVG 231
>sp|O05668|Y1370_MYCLE Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium
leprae (strain TN) GN=ML1370 PE=3 SV=1
Length = 256
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+LF VGRLD T GLI++TNDG+ A + HPS ++ K Y+AT+ GAV + +S G
Sbjct: 113 KLFHVGRLDADTEGLILLTNDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLE 172
Query: 82 IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 141
++ D ++ P + +R+ +HEGR VR L+ AG + L R IG
Sbjct: 173 LDDGPAHVDDFAVVDAIPG--KTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVS 230
Query: 142 L 142
L
Sbjct: 231 L 231
>sp|P45124|RSUA_HAEIN Ribosomal small subunit pseudouridine synthase A OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rsuA PE=1 SV=1
Length = 232
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L + GRLDV TTGL+++T+DG ++ ++ P +K Y+ T+ V + + A +EG +
Sbjct: 94 KLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGIL 153
Query: 82 IEGTH--CTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ G P +E+L + + + EGR H+V+ + G K+ L R +IG
Sbjct: 154 LRGEKEPTKPAKLEILDDY------NVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGD 207
Query: 140 FRLPSDLGIGMHVELKQSDLK 160
L L G + L QS+++
Sbjct: 208 VVLDESLEEGEYRPLTQSEIE 228
>sp|Q8D8C0|RLUB_VIBVU Ribosomal large subunit pseudouridine synthase B OS=Vibrio
vulnificus (strain CMCP6) GN=rluB PE=3 SV=1
Length = 320
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P + R +VGRLD T+GL++ T DG+ A + HPS ++++EY+ + G VN+ +
Sbjct: 93 RLPKIRGSRWISVGRLDANTSGLLLFTTDGELANRLMHPSRQVEREYLVRVFGEVNEHKV 152
Query: 74 IAISEGTVI-EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ G + +G DVV + +V++EGRN EVR L ++ + L
Sbjct: 153 RNLVNGVELDDGLARFEDVVYTGGEGMNHT---FYVVINEGRNREVRRLWESQDCTVSRL 209
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
KR+R G L L G +EL+ D+ +
Sbjct: 210 KRVRYGDIYLDKKLPRGGWMELELKDVNYL 239
>sp|P65843|Y1738_MYCBO Uncharacterized RNA pseudouridine synthase Mb1738 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1738 PE=3
SV=1
Length = 254
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+LF VGRLD T GL+++TNDG+ A + HPS ++ K Y+AT+ G+V + + G
Sbjct: 111 KLFHVGRLDADTEGLMLLTNDGELAHRLMHPSHEVPKTYLATVTGSVPRGLGRTLRAGIE 170
Query: 82 IEGTHCTPD---VVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
++ D VV+ +P + +R+ +HEGRN VR L+ AG + +L R IG
Sbjct: 171 LDDGPAFVDDFAVVDAIP-----GKTLVRVTLHEGRNRIVRRLLAAAGFPVEALVRTDIG 225
Query: 139 GFRL 142
L
Sbjct: 226 AVSL 229
>sp|P65842|Y1711_MYCTU Uncharacterized RNA pseudouridine synthase Rv1711/MT1751.1
OS=Mycobacterium tuberculosis GN=Rv1711 PE=3 SV=1
Length = 254
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+LF VGRLD T GL+++TNDG+ A + HPS ++ K Y+AT+ G+V + + G
Sbjct: 111 KLFHVGRLDADTEGLMLLTNDGELAHRLMHPSHEVPKTYLATVTGSVPRGLGRTLRAGIE 170
Query: 82 IEGTHCTPD---VVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
++ D VV+ +P + +R+ +HEGRN VR L+ AG + +L R IG
Sbjct: 171 LDDGPAFVDDFAVVDAIP-----GKTLVRVTLHEGRNRIVRRLLAAAGFPVEALVRTDIG 225
Query: 139 GFRL 142
L
Sbjct: 226 AVSL 229
>sp|Q87BI2|RLUB_XYLFT Ribosomal large subunit pseudouridine synthase B OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rluB PE=3
SV=1
Length = 476
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH--- 72
P L R +GRLD+ TTGL+++T DG+ A A+ HPSS++++EY+ + + H
Sbjct: 117 PVLKGARWIAIGRLDINTTGLLLLTTDGELANAMMHPSSEIEREYVVRVRSPEGEEHVQD 176
Query: 73 --LIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLY 130
L ++ G ++E D +E + R+VV EGRN EVR L ++ G ++
Sbjct: 177 ELLEQLTRGVMLEDGTAKFDTIERIGNTDS--HDWFRVVVKEGRNREVRRLWESQGCQVS 234
Query: 131 SLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
LKR R G LP +L G EL ++ ++ +
Sbjct: 235 RLKRTRYGSVLLPRELLRGQSTELPKTQVEAL 266
>sp|Q8Z7D5|RLUB_SALTI Ribosomal large subunit pseudouridine synthase B OS=Salmonella
typhi GN=rluB PE=3 SV=1
Length = 291
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLDV T GL++ T DG+ A + HPS ++++EY + G V++ L
Sbjct: 94 RLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDESKL 153
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+S G +E ++ + + + EGRN EVR L + G+++ L
Sbjct: 154 RDLSRGVQLEDGPAAFKTIKFSGGEG--INQWYNVTLTEGRNREVRRLWEAVGVQVSRLI 211
Query: 134 RLRIGGFRLPSDLGIGMHVEL 154
R+R G LP L G EL
Sbjct: 212 RVRYGDIPLPKGLPRGGWTEL 232
>sp|Q9PAP2|RLUB_XYLFA Ribosomal large subunit pseudouridine synthase B OS=Xylella
fastidiosa (strain 9a5c) GN=rluB PE=3 SV=1
Length = 476
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRH--- 72
P L R +GRLD+ TTGL+++T DG+ A A+ HPSS++++EY+ + + H
Sbjct: 117 PVLKGARWIAIGRLDINTTGLLLLTTDGELANAMMHPSSEIEREYVVRVRSPEGEEHVQD 176
Query: 73 --LIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLY 130
L ++ G ++E D +E + R+VV EGRN EVR L ++ G ++
Sbjct: 177 ELLEQLTRGVMLEDGTAKFDTIERIGNTDS--HDWFRVVVKEGRNREVRRLWESQGCQVS 234
Query: 131 SLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
LKR R G LP +L G EL ++ ++ +
Sbjct: 235 RLKRTRYGSVLLPRELLRGQSTELPKTQVEAL 266
>sp|Q8ZP51|RLUB_SALTY Ribosomal large subunit pseudouridine synthase B OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluB PE=3 SV=1
Length = 291
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLDV T GL++ T DG+ A + HPS ++++EY + G V++ L
Sbjct: 94 RLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDESKL 153
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+S G +E ++ + + + EGRN EVR L + G+++ L
Sbjct: 154 RDLSRGVQLEDGPAAFKTIKFSGGEG--INQWYNVTLTEGRNREVRRLWEAVGVQVSRLI 211
Query: 134 RLRIGGFRLPSDLGIGMHVEL 154
R+R G LP L G EL
Sbjct: 212 RVRYGDIPLPKGLPRGGWTEL 232
>sp|Q9KSS7|RLUB_VIBCH Ribosomal large subunit pseudouridine synthase B OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluB PE=3 SV=1
Length = 321
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P + R +VGRLD T+GL++ T DG+ A + HPS ++++EY+ + G V + +
Sbjct: 93 RLPKIRGSRWISVGRLDANTSGLLLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKV 152
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ G +E G DV + I +V++EGRN EVR L ++ G + L
Sbjct: 153 RNLVRGVQLEDGMARFEDV--MYAGGEGINHT-FYVVINEGRNREVRRLWESQGTTVSRL 209
Query: 133 KRLRIGGFRLPSDLGIG--MHVELKQ 156
KR+R G L L G M ++LKQ
Sbjct: 210 KRVRYGDIFLDKKLPRGGWMELDLKQ 235
>sp|Q8ZEG0|RLUB_YERPE Ribosomal large subunit pseudouridine synthase B OS=Yersinia pestis
GN=rluB PE=3 SV=1
Length = 318
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLDV T+GL++ T DG+ A + HPS ++++EY + G ++ +
Sbjct: 94 RLPKLRGSRWVAVGRLDVNTSGLLLFTTDGELANRLMHPSREVEREYAVRVFGQIDDDKI 153
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQ-PDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+S G +E P + Q + + + EGRN EVR L + G+++ L
Sbjct: 154 KQLSRGVQLED---GPAAFRTISYQGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRL 210
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLMGW 164
R+R G LP L G EL DLK +
Sbjct: 211 IRVRYGDINLPKGLPRGGWTEL---DLKATNY 239
>sp|Q9HX48|RLUE_PSEAE Ribosomal large subunit pseudouridine synthase E OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluE PE=3 SV=1
Length = 189
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+P P ++ GRLD + GL+++TNDG ++ P KL K Y ++G ++ L +
Sbjct: 37 IPVPGVYPAGRLDRDSEGLLLLTNDGRLQARIADPRHKLPKTYWVQVEGTPDEEQLRRLR 96
Query: 78 EGTVIEGTHCTPDVVELL---------PP---QPDIPRPRIRIVVHEGRNHEVRELVKNA 125
EG + P LL PP + +P + +V+ EGRN +VR +
Sbjct: 97 EGVTLNDGPTLPAEARLLDEPTLWERVPPVRFRKSVPTHWLELVIREGRNRQVRRMTAAV 156
Query: 126 GLKLYSLKRLRIGGFRLPSDLGIGMHVEL 154
GL L R+RIG + L LG+G E+
Sbjct: 157 GLPTLRLVRVRIGPWSL-DGLGLGEWREV 184
>sp|Q9CPN4|RSUA_PASMU Ribosomal small subunit pseudouridine synthase A OS=Pasteurella
multocida (strain Pm70) GN=rsuA PE=3 SV=1
Length = 232
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L + GRLDV TTGL+++T+DG ++ ++ P +K Y+ T+ V + A +EG +
Sbjct: 94 KLHSAGRLDVDTTGLVLLTDDGKWSHRITSPKHHCEKTYLVTLADPVESHYQQACAEGML 153
Query: 82 IEG--THCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ G T P +E+L + + + EGR H+V+ + G K+ L R +IG
Sbjct: 154 LRGEKTPTKPATLEILDDY------NVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGQ 207
Query: 140 FRLPSDLGIGMHVELKQSDL 159
L L G + L ++
Sbjct: 208 IELDDRLAEGEYRSLSAEEI 227
>sp|Q8FHV4|RLUB_ECOL6 Ribosomal large subunit pseudouridine synthase B OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluB
PE=3 SV=1
Length = 291
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLDV T GL++ T DG+ A + HPS ++++EY + G V+ L
Sbjct: 94 RLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKL 153
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+S G +E ++ + + + EGRN EVR L + G+++ L
Sbjct: 154 RDLSRGVQLEDGPAAFKTIKFSGGEG--INQWYNVTLTEGRNREVRRLWEAVGVQVSRLI 211
Query: 134 RLRIGGFRLPSDLGIGMHVEL 154
R+R G LP L G EL
Sbjct: 212 RVRYGDIPLPKGLPRGGWTEL 232
>sp|Q8X4Q8|RLUB_ECO57 Ribosomal large subunit pseudouridine synthase B OS=Escherichia
coli O157:H7 GN=rluB PE=3 SV=1
Length = 290
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLDV T GL++ T DG+ A + HPS ++++EY + G V+ L
Sbjct: 94 RLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKL 153
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+S G +E ++ + + + EGRN EVR L + G+++ L
Sbjct: 154 RDLSRGVQLEDGPAAFKTIKFSGGEG--INQWYNVTLTEGRNREVRRLWEAVGVQVSRLI 211
Query: 134 RLRIGGFRLPSDLGIGMHVEL 154
R+R G LP L G EL
Sbjct: 212 RVRYGDIPLPKGLPRGGWTEL 232
>sp|P59815|RLUB_SHIFL Ribosomal large subunit pseudouridine synthase B OS=Shigella
flexneri GN=rluB PE=3 SV=1
Length = 290
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLDV T GL++ T DG+ A + HPS ++++EY + G V+ L
Sbjct: 94 RLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKL 153
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+S G +E ++ + + + EGRN EVR L + G+++ L
Sbjct: 154 RDLSRGVQLEDGPAAFKTIKFSGGEG--INQWYNVTLTEGRNREVRRLWEAVGVQVSRLI 211
Query: 134 RLRIGGFRLPSDLGIGMHVEL 154
R+R G LP L G EL
Sbjct: 212 RVRYGDIPLPKGLPRGGWTEL 232
>sp|Q9CKK7|RLUE_PASMU Ribosomal large subunit pseudouridine synthase E OS=Pasteurella
multocida (strain Pm70) GN=rluE PE=3 SV=1
Length = 241
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+P P ++ GRLD + GL+++TN+G+ ++ P +K Y A ++G + L +
Sbjct: 77 IPIPHVYPAGRLDRDSEGLVLLTNNGEIQHRLAVPKFNTEKTYFAQVEGIPQETDLAQLR 136
Query: 78 EGTVIEGTHCTPDVVELLPPQPD--------------IPRPRIRIVVHEGRNHEVRELVK 123
+G V+ P V L+ P+P+ IP + I +HEGRN +VR +
Sbjct: 137 QGVVLNDGKTLPAKVRLV-PEPNWLWQRNPPIRERKQIPTSWLEIKIHEGRNRQVRRMTA 195
Query: 124 NAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 159
+ G L R ++ F L ++L G + +L + +L
Sbjct: 196 HIGFPTLRLIRYQMALFNL-ANLEQGQYRQLSEVEL 230
>sp|P37765|RLUB_ECOLI Ribosomal large subunit pseudouridine synthase B OS=Escherichia
coli (strain K12) GN=rluB PE=1 SV=2
Length = 291
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLDV T GL++ T DG+ A + HPS ++++EY + G V+ L
Sbjct: 94 RLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKL 153
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+S G +E ++ + + + EGRN EVR L + G+++ L
Sbjct: 154 RDLSRGVQLEDGPAAFKTIKFSGGEG--INQWYNVTLTEGRNREVRRLWEAVGVQVSRLI 211
Query: 134 RLRIGGFRLPSDLGIGMHVEL 154
R+R G LP L G EL
Sbjct: 212 RVRYGDIPLPKGLPRGGWTEL 232
>sp|Q87NB7|RLUB_VIBPA Ribosomal large subunit pseudouridine synthase B OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluB PE=3 SV=1
Length = 312
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P + R +VGRLD T+GL++ T DG+ A + HPS ++++EY+ + G V ++ +
Sbjct: 93 RLPKIRGSRWISVGRLDANTSGLLLFTTDGELANRLMHPSRQVEREYLVRVFGEVTEQKV 152
Query: 74 IAISEGTVIE-GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSL 132
+ +G +E G DVV + +V++EGRN EVR L ++ + L
Sbjct: 153 RNLVKGVELEDGLARFEDVVYAGGEGMNHT---FYVVINEGRNREVRRLWESQECTVSRL 209
Query: 133 KRLRIGGFRLPSDLGIGMHVELKQSDLKLMGW 164
KR+R G L L G +EL DLK + +
Sbjct: 210 KRVRYGDIFLDKKLPRGGWMEL---DLKEVNY 238
>sp|P65840|RSUA_SALTY Ribosomal small subunit pseudouridine synthase A OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsuA PE=3 SV=1
Length = 231
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L GRLD+ TTGL+++T+DG ++ ++ P +K Y+ T++ V ++G
Sbjct: 94 KLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAAQFAKGVQ 153
Query: 82 I--EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ E P +E++ P ++R+ + EGR H+V+ + G ++ L R RIG
Sbjct: 154 LHNEKDLTKPATLEVITPV------QVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGA 207
Query: 140 FRLPSDLGIGMHVELKQSDLKLMG 163
L +L G + L + ++ +G
Sbjct: 208 ITLDENLAPGEYRPLTEEEIASVG 231
>sp|P65841|RSUA_SALTI Ribosomal small subunit pseudouridine synthase A OS=Salmonella
typhi GN=rsuA PE=3 SV=1
Length = 231
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
+L GRLD+ TTGL+++T+DG ++ ++ P +K Y+ T++ V ++G
Sbjct: 94 KLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAAQFAKGVQ 153
Query: 82 I--EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ E P +E++ P ++R+ + EGR H+V+ + G ++ L R RIG
Sbjct: 154 LHNEKDLTKPATLEVITPV------QVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGA 207
Query: 140 FRLPSDLGIGMHVELKQSDLKLMG 163
L +L G + L + ++ +G
Sbjct: 208 ITLDENLAPGEYRPLTEEEIASVG 231
>sp|Q8P8M6|RLUB_XANCP Ribosomal large subunit pseudouridine synthase B OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluB PE=3 SV=1
Length = 492
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 16 PGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATI-----DGAVNK 70
P L R +GRLD+ TTGL+++T DG+ A A+ HPS ++++EY+ + + V
Sbjct: 118 PALKGSRWIAIGRLDINTTGLLLLTTDGELANAMMHPSYEVEREYVVRVRAPEGEEKVPD 177
Query: 71 RHLIAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLY 130
+ +S G ++E D +E + R+VV EGRN EVR L ++ G ++
Sbjct: 178 SMIERLSRGVLLEDGGAKFDEIERIGGTDS--HDWFRVVVKEGRNREVRRLWESQGCQVS 235
Query: 131 SLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
LKR R G LP +L G VEL Q + +
Sbjct: 236 RLKRTRYGKVSLPRELLRGQSVELAQEKVDAL 267
>sp|Q68WJ1|Y532_RICTY Uncharacterized RNA pseudouridine synthase RT0532 OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=RT0532 PE=3
SV=1
Length = 242
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
PR+ ++GRLD+ + GL+++TN GD A PSSKL++ Y G N L+ +
Sbjct: 93 PRVISIGRLDLNSEGLLLLTNSGDLAHQFEMPSSKLKRVYNVRAYGNAN--FLLKNNYNN 150
Query: 81 V-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ I+G P ++LL + +V+ EG+N E+R + + GLK+ L R++ G
Sbjct: 151 LKIDGIFYNPYSIKLLRQNKN--NSWFEVVLFEGKNREIRRIFEYFGLKVNKLIRVQYGA 208
Query: 140 FRLPSDLGIGMHVELKQSDLK 160
++ +L G + E+ LK
Sbjct: 209 LKI-GNLKPGDYKEISNKILK 228
>sp|Q1RJR2|Y321_RICBR Uncharacterized RNA pseudouridine synthase RBE_0321 OS=Rickettsia
bellii (strain RML369-C) GN=RBE_0321 PE=3 SV=1
Length = 229
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 71/123 (57%), Gaps = 5/123 (4%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGT 80
PR+ ++GRLD+ + GL+++TN+GD A+ PSSKL++ Y G N L+ +
Sbjct: 93 PRVISIGRLDLNSEGLLLLTNNGDLARQFELPSSKLKRVYHVRAYG--NPDPLLKSNYKN 150
Query: 81 V-IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGG 139
+ I+G P ++LL + + + +++ EG+N E+R + ++ GLK+ L R G
Sbjct: 151 LEIDGIFYNPQSIKLL--RKNSTNSWLEVILFEGKNREIRRIFEHFGLKVNKLIRTEYGD 208
Query: 140 FRL 142
F+L
Sbjct: 209 FKL 211
>sp|Q8PDR2|RLUE_XANCP Ribosomal large subunit pseudouridine synthase E OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluE PE=3 SV=1
Length = 187
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 17 GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 76
GLP P+++ GRLD + GL+++T+DG A ++ P K K Y ++G + L A+
Sbjct: 30 GLP-PQVYAAGRLDHDSEGLLLLTDDGPLAHRLTDPRHKQPKTYWVQVEGDPDTSQLQAL 88
Query: 77 SEGTVIEG----------THCTPDVVELLPP---QPDIPRPRIRIVVHEGRNHEVRELVK 123
+G ++ C P + PP + +P + + + EGRN +VR +
Sbjct: 89 CDGVLLNDGPTRPANVRRLECAPTLWPRDPPVRVRKTVPDAWLEVQITEGRNRQVRRMTA 148
Query: 124 NAGLKLYSLKRLRIGGFRLPS 144
+ GL L R+ IG + L S
Sbjct: 149 SVGLPTLRLVRVAIGAWSLAS 169
>sp|P45104|RLUB_HAEIN Ribosomal large subunit pseudouridine synthase B OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluB PE=1 SV=1
Length = 357
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLD+ T+GL++ T DG+ A + HPS ++++EY + G V+ L
Sbjct: 167 RLPRLTGSRWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVRVFGQVDDAML 226
Query: 74 IAISEGTVIEGTHCTPDVVEL-----LPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLK 128
+ +G +E ++ + D + + EGRN EVR L ++ G++
Sbjct: 227 ARLRKGVQLEDGLANFKEIKFTGGVGINQWYD-------VTLMEGRNREVRRLWESQGIQ 279
Query: 129 LYSLKRLRIGGFRLPSDLGIGMHVEL 154
+ L R+R G +L L G E+
Sbjct: 280 VSRLIRIRYGNIKLMKGLPRGGWEEM 305
>sp|Q55578|Y361_SYNY3 Uncharacterized RNA pseudouridine synthase slr0361 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr0361 PE=3 SV=1
Length = 249
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
L VGRLD +TG +++TNDG+ ++HP L K Y ++G + L G ++
Sbjct: 102 LHPVGRLDRNSTGALLLTNDGELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMML 161
Query: 83 EGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRL 142
+G P +E++ D + + + + EGRN ++R L + GL + L R IG +L
Sbjct: 162 DGKKTLPATLEVISENKD--QIHLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQL 219
Query: 143 PSD---LGIGMHVELKQSDLKLM 162
+ LG G L ++++L+
Sbjct: 220 HTRGKVLGSGQFRFLSPAEIRLL 242
>sp|Q92HG4|Y807_RICCN Uncharacterized RNA pseudouridine synthase RC0807 OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=RC0807 PE=3
SV=1
Length = 230
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS--E 78
PR+ ++GRLD+ + GL+++TN GD A+ PSS+L++ Y A K ++ S +
Sbjct: 93 PRVISIGRLDLNSEGLLLLTNSGDLARQFELPSSRLKRVYHVR---AYGKSDILLKSNYK 149
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+G P ++LL + + +V+ EG+N E+R + + GLK+ L R++ G
Sbjct: 150 NLEIDGIFYNPHSIKLL--KQNKTNCWFEVVLFEGKNREIRRIFEYCGLKVNKLIRIQYG 207
Query: 139 GFRL 142
F +
Sbjct: 208 SFTI 211
>sp|Q8PK58|RLUB_XANAC Ribosomal large subunit pseudouridine synthase B OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluB PE=3 SV=1
Length = 550
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATI-----DGAVNKRHLIAI 76
R +GRLD+ TTGL+++T DG+ A A+ HPS ++++EY+ + + V+ + +
Sbjct: 124 RWIAIGRLDINTTGLLLLTTDGELANAMMHPSYEVEREYVVRVRAPEGEEKVSDAIIERL 183
Query: 77 SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136
S G ++E D +E + R+VV EGRN EVR L ++ G ++ LKR R
Sbjct: 184 SRGVLLEDGGAKFDEIERIGGTDS--HDWFRVVVKEGRNREVRRLWESQGCQVSRLKRSR 241
Query: 137 IGGFRLPSDLGIGMHVELKQSDLKLM 162
G LP +L G VE+ Q + +
Sbjct: 242 YGKISLPRELLRGHSVEVAQDKVDAL 267
>sp|Q87QY8|RLUE_VIBPA Ribosomal large subunit pseudouridine synthase E OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluE PE=3 SV=1
Length = 238
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+P ++ GRLD + GL+++TNDG ++ P SK K Y +DGA ++ L +
Sbjct: 89 IPVKDVYAAGRLDRDSEGLMVLTNDGILQAKLTQPKSKSPKTYWVQVDGAPQEQDLEKLR 148
Query: 78 EGTVIEGTHCTPDVVELL---------PP---QPDIPRPRIRIVVHEGRNHEVRELVKNA 125
+G ++ P VE++ PP + +IP + I + EGRN +VR + +
Sbjct: 149 KGVELKDGMTLPAKVEVIDAPTIWERNPPVRFRANIPTTWLAITIIEGRNRQVRRMTAHI 208
Query: 126 GLKLYSLKRLRIGGFRLPSDLGIGMHVELK 155
G L R +G L DL G E++
Sbjct: 209 GFPTLRLVRYSMGDITL-GDLQPGQWKEIQ 237
>sp|Q9CMY9|RLUB_PASMU Ribosomal large subunit pseudouridine synthase B OS=Pasteurella
multocida (strain Pm70) GN=rluB PE=3 SV=1
Length = 345
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 14 RNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHL 73
R P L R VGRLD+ T+GL++ T DG+ A + HPS ++++EY + G V++ L
Sbjct: 155 RLPRLTGSRWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVRVFGQVDEAML 214
Query: 74 IAISEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLK 133
+ +G +E + E+ + + EGRN EVR L ++ G+++ L
Sbjct: 215 HRLKKGVQLE--DGPANFKEIKFAGGVGMNQWFDVTLMEGRNREVRRLWESQGVQVSRLI 272
Query: 134 RLRIGGFRLPSDLGIGMHVELKQSDLKLM 162
R R G L L G E+ +++ +
Sbjct: 273 RTRYGNISLMKSLPRGGWEEMDLTNVNYL 301
>sp|Q8DAS3|RLUE_VIBVU Ribosomal large subunit pseudouridine synthase E OS=Vibrio
vulnificus (strain CMCP6) GN=rluE PE=3 SV=1
Length = 234
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 18 LPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAIS 77
+P ++ GRLD + GL+++TNDG ++ P SK K Y ++GA + L +
Sbjct: 83 IPVKEVYAAGRLDRDSEGLMVLTNDGILQAKLTQPKSKSPKTYWVQVEGAPTEAQLEPLR 142
Query: 78 EGTVIEGTHCTPDVVELL---------PP---QPDIPRPRIRIVVHEGRNHEVRELVKNA 125
G ++ P VE++ PP + IP + I + EGRN +VR + +
Sbjct: 143 RGVELKDGLTLPAQVEIIQDPQLWERNPPVRFRAAIPTTWLAITIIEGRNRQVRRMTAHI 202
Query: 126 GLKLYSLKRLRIGGFRLPSDLGIGMHVEL 154
G L R +GG L DL G E+
Sbjct: 203 GFPTLRLVRYSMGGMTL-QDLQPGEWKEI 230
>sp|Q8D8X2|RSUA_VIBVU Ribosomal small subunit pseudouridine synthase A OS=Vibrio
vulnificus (strain CMCP6) GN=rsuA PE=3 SV=1
Length = 233
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 22 RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 81
L GRLDV TTGL+++T+DG ++ ++ P K K Y + + + ++EG
Sbjct: 93 ELHFAGRLDVDTTGLVLITDDGKWSHRITSPKHKCDKTYRVWLADPIGSDYAEKLAEGVQ 152
Query: 82 IEGTHCTPDVVEL-LPPQPDI---PRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRI 137
+ EL LP Q I + + +HEG+ H+V+ + G K+ L R RI
Sbjct: 153 LRNEK------ELTLPAQMTIVNADENEVLLTIHEGKYHQVKRMFAALGNKVEQLHRERI 206
Query: 138 GGFRLPSDLGIGMHVELKQSDLKLMGWK 165
G L L G + L Q ++ + WK
Sbjct: 207 GAIELDESLEPGEYRYLTQEEIDSV-WK 233
>sp|Q4UL59|Y544_RICFE Uncharacterized RNA pseudouridine synthase RF_0863 OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0863 PE=3
SV=1
Length = 229
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE-- 78
PR+ ++GRLD+ + GL+++TN GD A+ PS++L++ Y A K ++ S+
Sbjct: 93 PRVISIGRLDLNSEGLLLLTNSGDLARQFELPSNRLKRVYHVR---AYGKSDILLKSDYK 149
Query: 79 GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 138
I+G P ++L + + +V+ EG+N E+R + + GLK+ L R++ G
Sbjct: 150 NLEIDGIFYNPHSIKLF--KQNKSNSWFEVVLFEGKNREIRRIFEYFGLKVNKLIRIQYG 207
Query: 139 GFRLPSDLGIGMHVELKQSDLK 160
F + +L G + E+ L+
Sbjct: 208 SFTI-DNLKPGAYKEINNKILE 228
>sp|Q9KRK5|RSUA_VIBCH Ribosomal small subunit pseudouridine synthase A OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsuA PE=3 SV=1
Length = 231
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
L GRLDV TTGL+++T+DG ++ V+ P K +K Y + + + + G +
Sbjct: 94 LHFAGRLDVDTTGLLLITDDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIEL 153
Query: 83 EGTHCTPDVVEL-LPPQPD-IPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGF 140
G EL LP Q + I + + +HEG+ H+V+ + G K+ L R RIG
Sbjct: 154 RGER------ELTLPAQLEVISETEVLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQI 207
Query: 141 RLPSDLGIGMHVELKQSDLKLMGWK 165
L L G + L + ++ + WK
Sbjct: 208 TLDETLEPGEYRYLTEEEVASI-WK 231
>sp|Q9F855|RLUE_VIBCH Ribosomal large subunit pseudouridine synthase E OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluE PE=3 SV=2
Length = 241
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 23 LFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVI 82
++ GRLD + GL+I+TNDG ++ P SK K Y ++G+ + L A+ G +
Sbjct: 97 VYAAGRLDRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTL 156
Query: 83 EGTHCTPDVVELLPPQPDIPR-PRIR-----------IVVHEGRNHEVRELVKNAGLKLY 130
+ P V+++P PR P +R I + EGRN +VR + + G
Sbjct: 157 KDGPTLPAKVDIMPEPTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTL 216
Query: 131 SLKRLRIGGFRLPSDLGIGMHVEL 154
L R +G + L DL G E+
Sbjct: 217 RLIRYSMGDWNL-GDLQPGEWREV 239
>sp|Q9I5J6|RSUA_PSEAE Ribosomal small subunit pseudouridine synthase A OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rsuA PE=3 SV=1
Length = 230
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 27 GRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGTH 86
GRLD TTGL+++TNDG +++ ++ P S+ K Y + +++R++ A + G H
Sbjct: 99 GRLDYNTTGLMLLTNDGQWSRRLTLPGSRRDKVYYVETEAPIDQRYVDAFA-----AGLH 153
Query: 87 CTPDVVELLPPQPDIPRPRI-RIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSD 145
+ + LP Q + PR R+ +HEGR H+V+ + + K+ L R R+G L
Sbjct: 154 FRFEDLVTLPAQLEPIGPRCARLTLHEGRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQ 213
Query: 146 LGIG 149
L G
Sbjct: 214 LPPG 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,121,170
Number of Sequences: 539616
Number of extensions: 2747034
Number of successful extensions: 7566
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 7410
Number of HSP's gapped (non-prelim): 135
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)