Query 031054
Match_columns 166
No_of_seqs 157 out of 1308
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 13:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031054.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031054hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vioa1 d.265.1.3 (A:58-231) R 100.0 1.1E-40 8.1E-45 253.4 17.3 137 21-163 36-174 (174)
2 d1kska4 d.265.1.3 (A:60-231) R 100.0 8.6E-41 6.3E-45 254.0 14.8 137 20-162 33-171 (172)
3 d1v9ka_ d.265.1.3 (A:) Ribosom 100.0 6E-30 4.4E-34 201.1 9.3 114 21-136 43-170 (227)
4 d1v9fa_ d.265.1.3 (A:) Ribosom 100.0 5.5E-30 4E-34 204.3 8.2 130 2-136 38-178 (250)
5 d1r3ea2 d.265.1.2 (A:10-237) P 97.5 0.00041 3E-08 52.7 10.7 138 2-149 15-208 (228)
6 d2ey4a2 d.265.1.2 (A:8-252) Ps 97.1 0.0034 2.5E-07 48.0 11.8 131 2-144 54-208 (245)
7 d1sgva2 d.265.1.2 (A:3-235) Ps 96.9 0.0023 1.7E-07 48.6 9.1 57 2-64 16-72 (233)
8 d1k8wa5 d.265.1.2 (A:9-250) Ps 96.9 0.0035 2.5E-07 47.8 10.0 130 2-143 16-203 (242)
9 d2apoa2 d.265.1.2 (A:17-246) P 96.7 0.0053 3.9E-07 46.4 9.3 132 2-143 41-194 (230)
10 d2ysca1 b.72.1.1 (A:8-33) Amyl 37.6 6.1 0.00045 18.7 1.0 10 145-155 1-10 (26)
11 d1fhea2 c.47.1.5 (A:1-80) Clas 27.1 17 0.0012 21.2 2.1 25 111-136 9-33 (80)
12 d2ho2a1 b.72.1.1 (A:253-285) A 24.8 14 0.001 18.4 1.1 11 145-156 2-12 (33)
No 1
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=100.00 E-value=1.1e-40 Score=253.39 Aligned_cols=137 Identities=31% Similarity=0.557 Sum_probs=124.2
Q ss_pred CCeeecCCCCcCCceeeeeeCCHHHHHHhhcCCCCCCeEEEEEEecccChhhhhhhhcceeeCCcc--cceeEEEEcCCC
Q 031054 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGTH--CTPDVVELLPPQ 98 (166)
Q Consensus 21 ~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~i~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 98 (166)
.++++|||||++||||||||+|+++++.++++...++|+|.+.+.+.++++.+..+..++.++|.. ..++.++..+
T Consensus 36 ~~l~~V~RLD~~TsGLll~t~d~~~~~~l~~~~~~~~k~y~v~v~~~~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~~-- 113 (174)
T d1vioa1 36 GKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEILD-- 113 (174)
T ss_dssp GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEESSCCCTTHHHHHHHCCCCTTCSSCCCCCEEEECS--
T ss_pred CceEEEecCChhHhceEEEeecccccccccccccceeeeeeeEEecccchhhHHHHhCCceecCccccceeeeecccc--
Confidence 468999999999999999999999999999999999999999999999999999999998887754 4456666654
Q ss_pred CCCCceEEEEEecCCchhHHHHHHHHcCCceeeeeeeEEeCeecCCCCCCCcEEEcCHHHHhhcc
Q 031054 99 PDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLMG 163 (166)
Q Consensus 99 ~~~~~~ll~~~l~tGR~HQIR~~l~~~G~pI~~l~R~~~g~~~l~~~l~~G~~r~l~~~e~~~l~ 163 (166)
.+.++++|.|||+||||+||+++||||++|+|++||+++|+.+|++|+||+|+++|++.|.
T Consensus 114 ----~~~~~i~l~tGR~hQIR~~~~~~g~pI~~L~Ri~~g~~~L~~~L~~G~~r~l~~~Ei~~ll 174 (174)
T d1vioa1 114 ----DYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLV 174 (174)
T ss_dssp ----SSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTCCTTCEEECCHHHHHHTC
T ss_pred ----CcEEEEEEecccchHHHHHHHHcCCEEEEEEEEEEcccccCCCCCCCCcEECCHHHHHhhC
Confidence 3579999999999999999999999999999999999999447999999999999999873
No 2
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=8.6e-41 Score=254.05 Aligned_cols=137 Identities=28% Similarity=0.576 Sum_probs=124.3
Q ss_pred CCCeeecCCCCcCCceeeeeeCCHHHHHHhhcCCCCCCeEEEEEEecccChhhhhhhhcceeeCCcc--cceeEEEEcCC
Q 031054 20 RPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGTH--CTPDVVELLPP 97 (166)
Q Consensus 20 ~~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~i~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 97 (166)
..++++|||||++||||||||+|++++++|+++.++++|+|+|.|+|+++++.+..+++|+.++|.. ..++.++...
T Consensus 33 ~~~l~~vgRLD~~tsGLlL~tndg~~~~~l~~~~~~i~k~Y~v~v~~~i~~~~~~~l~~gv~i~~~~~~~~~~~v~~~~- 111 (172)
T d1kska4 33 AWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT- 111 (172)
T ss_dssp GGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEESSCCCTTHHHHHHHCCCCTTCSSCCCCCEEEEEE-
T ss_pred cCcEEEeecCCccccccEEEecccceeeeeccccccccEEEEEEEeccCCHHHHHHhhcceEEcCccccccceEEeecc-
Confidence 3568999999999999999999999999999999999999999999999999999999999888754 3344555433
Q ss_pred CCCCCceEEEEEecCCchhHHHHHHHHcCCceeeeeeeEEeCeecCCCCCCCcEEEcCHHHHhhc
Q 031054 98 QPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDLKLM 162 (166)
Q Consensus 98 ~~~~~~~ll~~~l~tGR~HQIR~~l~~~G~pI~~l~R~~~g~~~l~~~l~~G~~r~l~~~e~~~l 162 (166)
.++++|++.|||+||||+||+++||||++|+|++||+++|+++|++|+||+|+++|++.|
T Consensus 112 -----~~~l~i~l~~Gr~~qIR~~~~~lg~~V~~L~Rv~~G~~~L~~~L~~G~~r~L~~~Ei~~l 171 (172)
T d1kska4 112 -----PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 171 (172)
T ss_dssp -----TTEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTCCTTCEEECCHHHHTTC
T ss_pred -----CcEEEEEEecCccHHHHHHHHHcCCEEeEEEEEEEccEecCCCCCCCCeEECCHHHHHhh
Confidence 368999999999999999999999999999999999999966899999999999999987
No 3
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=6e-30 Score=201.12 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=93.1
Q ss_pred CCeeecCCCCcCCceeeeeeCCHHHHHHhhcC--CCCCCeEEEEEEecccChhhhhhh--------hcc---e-eeCCcc
Q 031054 21 PRLFTVGRLDVATTGLIIVTNDGDFAQAVSHP--SSKLQKEYIATIDGAVNKRHLIAI--------SEG---T-VIEGTH 86 (166)
Q Consensus 21 ~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~--~~~i~K~Y~a~v~g~~~~~~~~~~--------~~~---~-~~~~~~ 86 (166)
..+.+|||||++||||||||++.+++..|++. ++.+.|+|+|+|.|.++....... ..+ + ...+++
T Consensus 43 ~~~~~vHRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K~Y~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk 122 (227)
T d1v9ka_ 43 RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGK 122 (227)
T ss_dssp SCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEECTTSB
T ss_pred cccceeeeccceeeeeeeeecchHHHHHHHHHHhcccccceecccccCccccccCccccccccccccceeeeeecCCCCc
Confidence 46789999999999999999999999999874 789999999999999875532110 000 1 123456
Q ss_pred cceeEEEEcCCCCCCCceEEEEEecCCchhHHHHHHHHcCCceeeeeeeE
Q 031054 87 CTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ll~~~l~tGR~HQIR~~l~~~G~pI~~l~R~~ 136 (166)
.+.+.+++++.. ..+++++|+|.|||+||||+||+++||||++|..|+
T Consensus 123 ~a~t~~~~l~~~--~~~slv~~~~~TGRtHQIRvHla~lG~PIvGD~~Yg 170 (227)
T d1v9ka_ 123 PSETRFKVEERY--AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG 170 (227)
T ss_dssp CCCEEEEEEEEC--SSEEEEEEEESSCCTTHHHHHHHHTTCCBTTCTTTS
T ss_pred ccceeehhhhhc--CCcEEEEEEeccCchHHHHHHHhhcCceeccCcccc
Confidence 677888888764 358999999999999999999999999999999874
No 4
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=5.5e-30 Score=204.33 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=101.4
Q ss_pred cchHHHHHHHhhcCCCCCCCCeeecCCCCcCCceeeeeeCCHHHHHHhhcC--CCCCCeEEEEEEecccChhhhhhh---
Q 031054 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHP--SSKLQKEYIATIDGAVNKRHLIAI--- 76 (166)
Q Consensus 2 sl~d~~~~~~~~~~~~~~~~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~--~~~i~K~Y~a~v~g~~~~~~~~~~--- 76 (166)
|+++.+..++..... .+.+.+|||||++||||||||++..++..|++. ++.|.|+|+|++.|.++.+.....
T Consensus 38 t~~~~l~~~~~~~~~---~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~v~K~Y~a~~~g~~~~~~~~~~~~~ 114 (250)
T d1v9fa_ 38 TVLNALLHYYPPIAD---VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPIS 114 (250)
T ss_dssp SHHHHHHHHCGGGGG---SGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCCCEEEECCEE
T ss_pred cHHHHHHHHhhhccC---CCceeEEeecCCCCcceEEEecccHHHHhhhhhhccceEeEEeeeeeccccccccccccccc
Confidence 455655555543221 356789999999999999999999999999874 789999999999999876542110
Q ss_pred -----hcce-eeCCcccceeEEEEcCCCCCCCceEEEEEecCCchhHHHHHHHHcCCceeeeeeeE
Q 031054 77 -----SEGT-VIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 136 (166)
Q Consensus 77 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~tGR~HQIR~~l~~~G~pI~~l~R~~ 136 (166)
...+ ...+++.+.|.++++... ..++++++.|.|||+||||+||+++||||++|.+|+
T Consensus 115 ~~~~~~~~~~~~~~gk~a~T~~~~l~~~--~~~slv~~~~~TGR~HQIRvHla~lG~PIlGD~~YG 178 (250)
T d1v9fa_ 115 RHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG 178 (250)
T ss_dssp ECSSCTTCEEECTTSBCCEEEEEEEEEC--SSEEEEEEEESCCCTTHHHHHHHHTTCCBTTCTTTT
T ss_pred cCCcccceeEECCCCeeccccchhhhcc--cCceeEEEEecccchHHHHHHHHHhCCccceeccCc
Confidence 0011 123456678889988764 458999999999999999999999999999999984
No 5
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]}
Probab=97.53 E-value=0.00041 Score=52.71 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=79.6
Q ss_pred cchHHHHHHHhhcCCCCCCCCeeecCCCCcCCceeeeeeCCHHHHHHhhcCCCCCCeEEEEEEe-c----------cc--
Q 031054 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATID-G----------AV-- 68 (166)
Q Consensus 2 sl~d~~~~~~~~~~~~~~~~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~i~K~Y~a~v~-g----------~~-- 68 (166)
|..| +...+++.+. ..++...|+||-.+||||+++=+. .. ++.+.-.+..|+|.+.+. | .+
T Consensus 15 tS~~-~v~~vk~~l~---~~KvGh~GTLDP~AsGvL~i~ig~-~t-kl~~~~~~~~K~Y~~~~~lG~~TdT~D~~G~i~~ 88 (228)
T d1r3ea2 15 TSHD-VVDEVRKKLK---TRKVGHGGTLDPFACGVLIIGVNQ-GT-RILEFYKDLKKVYWVKMRLGLITETFDITGEVVE 88 (228)
T ss_dssp CHHH-HHHHHHHHTT---CSCEEESSCCCTTCEEEEEEEEGG-GG-GGGGGGTTSCEEEEEEEEETEEESSSBTTSCEEE
T ss_pred CHHH-HHHHHHHHhC---CCccCcCcccCCcceeeEEEEEcc-cc-cchhhhhcccceEEEEEEEeccccccccCCccce
Confidence 3344 4445555443 358899999999999999997653 22 233222346799999763 1 11
Q ss_pred ------Chhhhhhh-h-------------cceeeCCc-----------------ccceeEEEEcCCCCCCCceEEEEEec
Q 031054 69 ------NKRHLIAI-S-------------EGTVIEGT-----------------HCTPDVVELLPPQPDIPRPRIRIVVH 111 (166)
Q Consensus 69 ------~~~~~~~~-~-------------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ll~~~l~ 111 (166)
..+.+... . ..+.++|. ....-+++.++.. .+...+++.--
T Consensus 89 ~~~~~~~~~~i~~~l~~f~G~~~Q~pP~ySA~Kv~Gkr~Y~lAR~g~~~~~~~r~v~I~~~~l~~~~--~~~~~~~v~cs 166 (228)
T d1r3ea2 89 ERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIE--GRDVSFRVEVS 166 (228)
T ss_dssp ECCCCCCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEE--TTEEEEEEEEC
T ss_pred ecccchhHHHHHHHHHhccChhhhHHHHHHHhhcchHHHHHHHHhhhccccccchhhhhhhhheeec--CCcceeEEEEC
Confidence 11222111 0 00111221 1111233333322 23566777777
Q ss_pred CCchhHHHHHHHHcCCc------eeeeeeeEEeCeecCCCCCCC
Q 031054 112 EGRNHEVRELVKNAGLK------LYSLKRLRIGGFRLPSDLGIG 149 (166)
Q Consensus 112 tGR~HQIR~~l~~~G~p------I~~l~R~~~g~~~l~~~l~~G 149 (166)
.|- -||.....+|.- +..|+|+++|+|.+++.+..-
T Consensus 167 ~GT--YIRsL~~dlg~~Lg~~a~l~~LrR~~~G~f~l~~a~~l~ 208 (228)
T d1r3ea2 167 PGT--YIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVF 208 (228)
T ss_dssp TTC--CHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCTT
T ss_pred CHH--HHHHHHHHHHHHcCCcEEEeEeEEeeecCcChHHcCCHH
Confidence 775 599888765543 689999999999997556554
No 6
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=97.14 E-value=0.0034 Score=47.96 Aligned_cols=131 Identities=21% Similarity=0.223 Sum_probs=80.7
Q ss_pred cchHHHHHHHhhcCCCCCCCCeeecCCCCcCCceeeeeeCCH--HHHHHhhcCCCCCCeEEEEEEec--ccChhhhhhh-
Q 031054 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDG--DFAQAVSHPSSKLQKEYIATIDG--AVNKRHLIAI- 76 (166)
Q Consensus 2 sl~d~~~~~~~~~~~~~~~~~l~~vhRLD~~TSGlll~ak~~--~~~~~l~~~~~~i~K~Y~a~v~g--~~~~~~~~~~- 76 (166)
|..| +...+++.+. ..++...|-||-.+||+|+++-.. .+...+. ...|+|.|.+.- ..+.+++...
T Consensus 54 TS~~-vv~~vkk~l~---~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~~~----~~~K~Y~~~~~lg~~~~~~~i~~~l 125 (245)
T d2ey4a2 54 TSHE-VVAWIKKILN---LEKAGHGGTLDPKVSGVLPVALEKATRVVQALL----PAGKEYVALMHLHGDVPEDKIIQVM 125 (245)
T ss_dssp CHHH-HHHHHHHHTT---CSCEEESSCCCTTCEEEEEEEEGGGGGGHHHHT----TSCEEEEEEEEESSCCCHHHHHHHH
T ss_pred CHHH-HHHHHHHHhC---cCCCCcCccCCCcceeeEEEEecHHHHHHHHhc----cCCcEEEEEEEecCcccHHHHHHHH
Confidence 4445 4455555443 257899999999999999987653 3455554 578999998743 3344444321
Q ss_pred ---hcc----------eeeCCcccceeEEEEcCCCCCCCceEEEEEecCCchhHHHHHHHHcC------CceeeeeeeEE
Q 031054 77 ---SEG----------TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAG------LKLYSLKRLRI 137 (166)
Q Consensus 77 ---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~tGR~HQIR~~l~~~G------~pI~~l~R~~~ 137 (166)
... +...+.....-.++.++.. .+...+++.--.| --||..+..+| ..+..|+|+++
T Consensus 126 ~~f~G~i~Q~PP~ySAiK~~~r~~~I~~~ell~~~--~~~~~~~V~CSkG--TYIRSLa~DiG~~Lg~~a~l~~LrRt~~ 201 (245)
T d2ey4a2 126 KEFEGEIIQRPPLRSAVKRRLRTRKVYYIEVLEIE--GRDVLFRVGVEAG--TYIRSLIHHIGLALGVGAHMSELRRTRS 201 (245)
T ss_dssp HTTSEEEEECCCSSSCSCCCCEEEEEEEEEEEEEE--TTEEEEEEEECTT--CCHHHHHHHHHHHTSSCEEEEEEEEEEE
T ss_pred HhCcceeeecCChHHhccccccceEEEEEEEeeec--cccceeeccccCc--hhhhhHHHHHHHhhCCeEEEeEEEEEEe
Confidence 111 1112222222344454442 2345566666666 56888877665 46799999999
Q ss_pred eCeecCC
Q 031054 138 GGFRLPS 144 (166)
Q Consensus 138 g~~~l~~ 144 (166)
|+|.++.
T Consensus 202 G~F~l~~ 208 (245)
T d2ey4a2 202 GPFKEDE 208 (245)
T ss_dssp TTEESST
T ss_pred cCccHHh
Confidence 9999963
No 7
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=96.94 E-value=0.0023 Score=48.58 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=38.1
Q ss_pred cchHHHHHHHhhcCCCCCCCCeeecCCCCcCCceeeeeeCCHHHHHHhhcCCCCCCeEEEEEE
Q 031054 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATI 64 (166)
Q Consensus 2 sl~d~~~~~~~~~~~~~~~~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~i~K~Y~a~v 64 (166)
|..| +...+++.+. ..++...|.||-.+||+|+++=.. . -++.+.-....|+|.|.+
T Consensus 16 TS~~-~v~~vk~~~~---~kKvGh~GTLDP~AtGvL~i~ig~-a-TK~~~~~~~~~K~Y~~~~ 72 (233)
T d1sgva2 16 TSHD-VVGRCRRIFA---TRRVGHAGTLDPMATGVLVIGIER-A-TKILGLLTAAPKSYAATI 72 (233)
T ss_dssp CHHH-HHHHHHHHTT---CSCEEESSCCCTTCEEEEEEEEGG-G-GGGGGGTTTSCEEEEEEE
T ss_pred CHHH-HHHHHHHHhC---cCccccCcCCCCcceeeEEEEech-h-hhhhhhhccCceEEEEEE
Confidence 3444 4455555443 357899999999999999987753 2 233332234579999976
No 8
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]}
Probab=96.92 E-value=0.0035 Score=47.81 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=77.0
Q ss_pred cchHHHHHHHhhcCCCCCCCCeeecCCCCcCCceeeeeeCCH--HHHHHhhcCCCCCCeEEEEEEe-ccc----------
Q 031054 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDG--DFAQAVSHPSSKLQKEYIATID-GAV---------- 68 (166)
Q Consensus 2 sl~d~~~~~~~~~~~~~~~~~l~~vhRLD~~TSGlll~ak~~--~~~~~l~~~~~~i~K~Y~a~v~-g~~---------- 68 (166)
|..| +...+++.+. ..++...|.||--+||+|+++=.. .+...+. ...|+|.|.+. |.-
T Consensus 16 tS~~-vv~~~k~~l~---~kKvGh~GTLDP~AsGvL~i~ig~aTK~~~~~~----~~~K~Y~~~i~~G~~TdT~D~~G~i 87 (242)
T d1k8wa5 16 SSND-ALQKVKRIYN---ANRAGHTGALDPLATGMLPICLGEATKFSQYLL----DSDKRYRVIARLGQRTDTSDADGQI 87 (242)
T ss_dssp CHHH-HHHHHHHHTT---CSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHH----TSCEEEEEEEEETEEESSSBTTSCE
T ss_pred CHHH-HHHHHHHHhC---CCcCCcCCcCCCcccceEEEEEchhhhhhhhhh----hhhheeeEEEEECcccccccchhhh
Confidence 3445 4455555443 357899999999999999986542 3344444 35699999762 211
Q ss_pred --------Chhhhhh----hh----------cceeeCCc-----------------ccceeEEEEcCCCCCCCceEEEEE
Q 031054 69 --------NKRHLIA----IS----------EGTVIEGT-----------------HCTPDVVELLPPQPDIPRPRIRIV 109 (166)
Q Consensus 69 --------~~~~~~~----~~----------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ll~~~ 109 (166)
+.+++.. +. ..+.++|. ......++.+.. ..+...+++.
T Consensus 88 ~~~~~~~~~~~~i~~~l~~f~G~~~Q~PP~~SAvKv~GkraY~lAR~g~~v~~~~r~i~i~~l~~~~~--~~~~~~f~v~ 165 (242)
T d1k8wa5 88 VEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIH 165 (242)
T ss_dssp EEECCCCCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEE--ETTEEEEEEE
T ss_pred cccccccchhHHHHHhHHhccccEEeeccHHHHHHHhhHHHHHHHHhhcccccceeEEEeEeeeeccc--cccEEEEEEE
Confidence 1122211 10 01112221 111223344433 2345667777
Q ss_pred ecCCchhHHHHHHHHcCC------ceeeeeeeEEeCeecC
Q 031054 110 VHEGRNHEVRELVKNAGL------KLYSLKRLRIGGFRLP 143 (166)
Q Consensus 110 l~tGR~HQIR~~l~~~G~------pI~~l~R~~~g~~~l~ 143 (166)
--.|- -||.+..-+|. .+..|+|+++|+|.++
T Consensus 166 cskGT--YIRsLa~DlG~~Lg~~a~l~~LrRt~~G~f~~~ 203 (242)
T d1k8wa5 166 CSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 203 (242)
T ss_dssp ECTTC--CHHHHHHHHHHHHTSCEEEEEEEEEEETTCCGG
T ss_pred Eccch--HHHHHHHHHHHhcCCCEEEeEEEEeeECCCCHH
Confidence 77774 79988776654 4699999999999995
No 9
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=96.67 E-value=0.0053 Score=46.41 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=79.0
Q ss_pred cchHHHHHHHhhcCCCCCCCCeeecCCCCcCCceeeeeeCCHHHHHHhhcCCCCCCeEEEEEEeccc--Chhhhhh----
Q 031054 2 SLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAV--NKRHLIA---- 75 (166)
Q Consensus 2 sl~d~~~~~~~~~~~~~~~~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~i~K~Y~a~v~g~~--~~~~~~~---- 75 (166)
|..| +...+++.+. ..++...|-||-.+||||+++=... . ++.+.-..-.|+|.|.+.=.. +.+++..
T Consensus 41 TS~~-vv~~ikk~l~---~kKvGH~GTLDP~AtGvL~v~iG~a-T-Kl~~~~~~~~K~Y~~~~~~g~~t~~~di~~~l~~ 114 (230)
T d2apoa2 41 TSHE-VSTWVKKILN---LDKAGHGGTLDPKVTGVLPVALERA-T-KTIPMWHIPPKEYVCLMHLHRDASEEDILRVFKE 114 (230)
T ss_dssp CHHH-HHHHHHHHTT---CSCEEESSCCCTTCEEEEEEEEGGG-G-GGGGGTTSSCEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHcC---CCCCCcccccCccceeeeeeeecHH-H-HHHHHHhccCceEEEEEEeeccccHhHHHHHHHh
Confidence 4445 4444555443 3588999999999999999976642 2 233323346799999875432 2333322
Q ss_pred hhcc----------eeeCCcccceeEEEEcCCCCCCCceEEEEEecCCchhHHHHHHHHcC------CceeeeeeeEEeC
Q 031054 76 ISEG----------TVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAG------LKLYSLKRLRIGG 139 (166)
Q Consensus 76 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~tGR~HQIR~~l~~~G------~pI~~l~R~~~g~ 139 (166)
+... +...+......+++.++.. .+...++|.--.| --||..+.-+| ..+..|+|+++|+
T Consensus 115 f~G~i~Q~PP~ySAiK~~~r~~~i~~l~l~~~~--~~~~~~~V~CSkG--TYIRSLa~DlG~~Lg~~a~l~~LrRt~~G~ 190 (230)
T d2apoa2 115 FTGRIYQRPPLKAAVKRRLRIRKIHELELLDKD--GKDVLFRVKCQSG--TYIRKLCEDIGEALGTSAHMQELRRTKSGC 190 (230)
T ss_dssp HSEEEECC-----------CEEEEEEEEEEEEE--TTEEEEEEEECTT--CCHHHHHHHHHHHTTSCEEEEEEEEEEETT
T ss_pred ccCcccccCCeeeeeccccceeeeEEeeecccc--CCeEEEEEEECCC--ccHHHHHHHHHHHcCCEEEEeECcCCccCC
Confidence 1111 1111222223345555443 2355666766667 46888877664 4569999999999
Q ss_pred eecC
Q 031054 140 FRLP 143 (166)
Q Consensus 140 ~~l~ 143 (166)
|.++
T Consensus 191 f~l~ 194 (230)
T d2apoa2 191 FEEK 194 (230)
T ss_dssp EEGG
T ss_pred cCHH
Confidence 9995
No 10
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.63 E-value=6.1 Score=18.66 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=7.3
Q ss_pred CCCCCcEEEcC
Q 031054 145 DLGIGMHVELK 155 (166)
Q Consensus 145 ~l~~G~~r~l~ 155 (166)
+||+| ||.+.
T Consensus 1 ~LPpG-W~~i~ 10 (26)
T d2ysca1 1 GLPPG-WRKIH 10 (26)
T ss_dssp CCCTT-EEEEE
T ss_pred CcCcc-ceeee
Confidence 47888 87764
No 11
>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}
Probab=27.12 E-value=17 Score=21.19 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=20.5
Q ss_pred cCCchhHHHHHHHHcCCceeeeeeeE
Q 031054 111 HEGRNHEVRELVKNAGLKLYSLKRLR 136 (166)
Q Consensus 111 ~tGR~HQIR~~l~~~G~pI~~l~R~~ 136 (166)
.-||-.+||.+|+..|.|-. ++++.
T Consensus 9 ~rgrae~iRl~L~~~gv~ye-~~~~~ 33 (80)
T d1fhea2 9 LRGLAQPVRLFLEYLGEEYE-EHLYG 33 (80)
T ss_dssp SCTTTHHHHHHHHHTTCCCE-EEEEC
T ss_pred CchHHHHHHHHHHHcCCCCE-EEEec
Confidence 35999999999999999986 45553
No 12
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.83 E-value=14 Score=18.44 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.3
Q ss_pred CCCCCcEEEcCH
Q 031054 145 DLGIGMHVELKQ 156 (166)
Q Consensus 145 ~l~~G~~r~l~~ 156 (166)
+||+| |+....
T Consensus 2 dLPpG-W~ki~D 12 (33)
T d2ho2a1 2 DLPAG-WMRVQD 12 (33)
T ss_dssp CSCTT-EEEEEC
T ss_pred CCCCc-ceeeec
Confidence 79999 877654
Done!