Query 031055
Match_columns 166
No_of_seqs 153 out of 408
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02810 carbon-monoxide oxyge 100.0 1.9E-51 4.2E-56 337.6 15.6 164 1-165 66-231 (231)
2 PLN02351 cytochromes b561 fami 100.0 7.6E-50 1.6E-54 330.3 14.8 158 1-161 70-229 (242)
3 PLN02680 carbon-monoxide oxyge 100.0 2.3E-49 4.9E-54 326.6 16.4 158 1-158 66-223 (232)
4 cd08764 Cyt_b561_CG1275_like N 100.0 5E-49 1.1E-53 321.8 14.7 159 1-161 43-204 (214)
5 KOG1619 Cytochrome b [Energy p 100.0 1.9E-48 4.1E-53 320.3 14.5 160 1-161 74-234 (245)
6 cd08765 Cyt_b561_CYBRD1 Verteb 100.0 2.6E-40 5.7E-45 258.2 10.2 119 1-119 31-152 (153)
7 cd08766 Cyt_b561_ACYB-1_like P 100.0 2.7E-40 5.8E-45 256.1 9.9 118 1-118 27-144 (144)
8 cd08762 Cyt_b561_CYBASC3 Verte 100.0 8.6E-40 1.9E-44 260.6 10.8 120 1-120 54-176 (179)
9 cd08763 Cyt_b561_CYB561 Verteb 100.0 3.8E-38 8.2E-43 243.9 10.0 117 1-117 26-143 (143)
10 cd08554 Cyt_b561 Eukaryotic cy 99.9 1.6E-26 3.5E-31 174.5 9.0 110 1-110 21-131 (131)
11 PF03188 Cytochrom_B561: Eukar 99.9 5.5E-26 1.2E-30 171.8 9.9 116 2-117 19-137 (137)
12 cd08761 Cyt_b561_CYB561D2_like 99.9 6.6E-26 1.4E-30 180.5 9.0 103 10-112 53-157 (183)
13 smart00665 B561 Cytochrome b-5 99.9 2.5E-25 5.4E-30 167.9 8.4 109 2-110 19-129 (129)
14 cd08760 Cyt_b561_FRRS1_like Eu 99.8 7.2E-19 1.6E-23 140.4 13.1 107 2-112 56-162 (191)
15 smart00665 B561 Cytochrome b-5 97.5 0.0054 1.2E-07 45.9 12.5 121 17-149 1-126 (129)
16 PF10348 DUF2427: Domain of un 97.3 0.00081 1.8E-08 49.6 6.6 56 16-73 45-102 (105)
17 PF03188 Cytochrom_B561: Eukar 97.3 0.0051 1.1E-07 46.0 10.5 92 17-113 1-94 (137)
18 cd08763 Cyt_b561_CYB561 Verteb 97.2 0.018 4E-07 44.6 12.7 126 14-149 6-133 (143)
19 cd08554 Cyt_b561 Eukaryotic cy 97.1 0.019 4.1E-07 42.9 12.2 125 16-149 3-128 (131)
20 cd08761 Cyt_b561_CYB561D2_like 96.8 0.074 1.6E-06 42.1 13.4 135 13-154 19-157 (183)
21 PF13301 DUF4079: Protein of u 96.8 0.024 5.2E-07 45.4 10.5 91 15-111 80-170 (175)
22 PF00033 Cytochrom_B_N: Cytoch 96.7 0.031 6.7E-07 43.1 10.3 144 12-156 6-176 (188)
23 cd08760 Cyt_b561_FRRS1_like Eu 96.5 0.16 3.6E-06 40.3 13.7 95 10-112 31-126 (191)
24 KOG4293 Predicted membrane pro 96.4 0.0002 4.3E-09 63.9 -4.1 105 3-111 233-340 (403)
25 cd08766 Cyt_b561_ACYB-1_like P 96.1 0.15 3.3E-06 39.5 11.1 96 11-112 4-99 (144)
26 cd08764 Cyt_b561_CG1275_like N 95.7 0.26 5.7E-06 40.7 11.5 98 11-112 20-118 (214)
27 PLN02680 carbon-monoxide oxyge 95.4 0.27 5.9E-06 41.1 10.9 96 11-112 43-138 (232)
28 PF13706 PepSY_TM_3: PepSY-ass 94.7 0.019 4.1E-07 34.6 1.6 31 47-77 3-33 (37)
29 cd08765 Cyt_b561_CYBRD1 Verteb 93.6 2.3 4.9E-05 33.5 11.6 93 14-112 11-106 (153)
30 PF13172 PepSY_TM_1: PepSY-ass 93.2 0.16 3.4E-06 29.8 3.5 29 83-111 1-29 (34)
31 cd08762 Cyt_b561_CYBASC3 Verte 93.1 3.3 7.1E-05 33.5 11.9 94 14-112 34-129 (179)
32 PF13706 PepSY_TM_3: PepSY-ass 92.6 0.22 4.7E-06 29.9 3.5 28 84-111 1-28 (37)
33 PLN02351 cytochromes b561 fami 92.4 4.1 9E-05 34.4 12.2 90 16-112 52-141 (242)
34 PLN02810 carbon-monoxide oxyge 91.3 3.3 7.1E-05 34.7 10.4 95 12-112 44-138 (231)
35 PF08507 COPI_assoc: COPI asso 89.4 7.6 0.00016 29.3 11.1 81 15-110 4-84 (136)
36 PF00033 Cytochrom_B_N: Cytoch 89.3 4 8.6E-05 31.2 8.8 55 58-112 14-71 (188)
37 PRK11513 cytochrome b561; Prov 89.2 4.4 9.5E-05 32.0 9.1 96 13-111 8-103 (176)
38 PF01794 Ferric_reduct: Ferric 89.2 2.7 5.9E-05 30.0 7.3 55 55-110 1-56 (125)
39 COG3038 CybB Cytochrome B561 [ 88.7 3.9 8.5E-05 33.0 8.5 50 61-111 21-70 (181)
40 PF01292 Ni_hydr_CYTB: Prokary 88.3 9.7 0.00021 29.1 10.8 57 14-70 6-64 (182)
41 PF01292 Ni_hydr_CYTB: Prokary 87.2 11 0.00025 28.7 15.2 50 59-109 13-64 (182)
42 PF10067 DUF2306: Predicted me 84.0 5 0.00011 29.0 6.3 28 84-111 2-29 (103)
43 PF13703 PepSY_TM_2: PepSY-ass 84.0 4.8 0.0001 28.0 6.1 25 87-111 60-84 (88)
44 PF13703 PepSY_TM_2: PepSY-ass 82.4 6.5 0.00014 27.4 6.2 61 13-73 15-85 (88)
45 PF04238 DUF420: Protein of un 82.1 11 0.00025 28.8 7.9 88 16-112 6-102 (133)
46 PF09990 DUF2231: Predicted me 82.1 8.7 0.00019 27.4 6.9 82 22-109 13-94 (104)
47 COG3038 CybB Cytochrome B561 [ 81.9 18 0.00038 29.2 9.3 94 13-111 11-108 (181)
48 PRK05419 putative sulfite oxid 78.3 35 0.00076 27.8 10.1 60 42-107 34-93 (205)
49 TIGR02125 CytB-hydogenase Ni/F 78.3 23 0.00051 27.9 8.9 138 14-156 7-192 (211)
50 PF03929 PepSY_TM: PepSY-assoc 77.6 3.6 7.8E-05 23.1 2.8 23 49-71 2-24 (27)
51 TIGR03144 cytochr_II_ccsB cyto 75.5 45 0.00097 27.5 11.3 86 10-108 21-116 (243)
52 PF13172 PepSY_TM_1: PepSY-ass 74.3 3.5 7.7E-05 23.9 2.4 26 47-72 4-29 (34)
53 PF10856 DUF2678: Protein of u 74.1 6.6 0.00014 29.7 4.3 65 9-80 22-86 (118)
54 PF13301 DUF4079: Protein of u 72.7 47 0.001 26.5 11.5 86 47-143 78-163 (175)
55 TIGR01583 formate-DH-gamm form 71.5 50 0.0011 26.4 9.4 137 13-154 8-172 (204)
56 PF11158 DUF2938: Protein of u 69.1 7.9 0.00017 30.3 4.0 58 44-103 87-148 (150)
57 PF10348 DUF2427: Domain of un 66.7 47 0.001 24.2 10.5 90 8-113 11-103 (105)
58 PLN02631 ferric-chelate reduct 65.3 84 0.0018 30.5 10.8 26 85-110 186-211 (699)
59 PRK11513 cytochrome b561; Prov 65.2 65 0.0014 25.3 8.6 50 59-111 16-65 (176)
60 KOG1619 Cytochrome b [Energy p 59.5 58 0.0013 27.6 7.6 94 14-112 54-147 (245)
61 PRK13673 hypothetical protein; 58.1 13 0.00028 28.1 3.2 88 7-111 23-110 (118)
62 PRK10263 DNA translocase FtsK; 57.6 1.5E+02 0.0032 31.1 11.3 60 18-78 20-88 (1355)
63 PLN02844 oxidoreductase/ferric 57.0 1.2E+02 0.0026 29.5 10.3 24 85-108 189-212 (722)
64 PRK15006 thiosulfate reductase 56.7 1.2E+02 0.0026 25.5 12.2 56 14-69 73-128 (261)
65 PF14358 DUF4405: Domain of un 54.5 48 0.001 21.5 5.2 50 55-104 5-58 (64)
66 PF02628 COX15-CtaA: Cytochrom 54.1 82 0.0018 26.6 7.9 76 14-101 225-300 (302)
67 PLN02292 ferric-chelate reduct 54.0 22 0.00048 34.4 4.8 23 85-107 203-225 (702)
68 COG3658 Cytochrome b [Energy p 52.4 1.3E+02 0.0027 24.5 11.3 103 50-153 35-169 (192)
69 cd01661 cbb3_Oxidase_I Cytochr 52.0 1.9E+02 0.0042 26.6 12.0 63 48-110 86-150 (493)
70 PF10215 Ost4: Oligosaccaryltr 50.7 32 0.0007 20.5 3.4 21 130-152 8-28 (35)
71 PF04238 DUF420: Protein of un 48.8 1.2E+02 0.0026 23.1 10.1 88 11-111 27-127 (133)
72 PF05449 DUF754: Protein of un 48.6 39 0.00085 23.8 4.2 47 24-70 3-49 (83)
73 PF12650 DUF3784: Domain of un 45.0 1.1E+02 0.0023 21.5 7.6 27 86-112 38-64 (97)
74 PF14927 Neurensin: Neurensin 43.2 1.2E+02 0.0027 23.4 6.6 64 82-146 38-111 (140)
75 cd00284 Cytochrome_b_N Cytochr 41.6 1.9E+02 0.0041 23.4 8.4 86 54-150 24-123 (200)
76 PRK10171 hydrogenase 1 b-type 41.4 2E+02 0.0043 23.6 9.5 61 13-73 17-84 (235)
77 COG4244 Predicted membrane pro 41.3 1.4E+02 0.003 23.8 6.7 68 67-142 66-134 (160)
78 PRK10179 formate dehydrogenase 39.6 2.1E+02 0.0045 23.3 14.0 136 13-154 13-176 (217)
79 COG1612 CtaA Uncharacterized p 37.4 2.8E+02 0.0062 24.2 9.0 91 10-111 225-315 (323)
80 PF10762 DUF2583: Protein of u 36.4 1.5E+02 0.0034 21.2 5.7 58 11-71 3-61 (89)
81 PRK10692 hypothetical protein; 35.7 1.5E+02 0.0033 21.3 5.6 57 12-71 4-61 (92)
82 PF10856 DUF2678: Protein of u 34.2 1.5E+02 0.0032 22.5 5.6 52 51-111 30-81 (118)
83 PF07457 DUF1516: Protein of u 33.7 1.5E+02 0.0032 21.9 5.6 51 11-63 29-79 (110)
84 TIGR02125 CytB-hydogenase Ni/F 32.8 1.3E+02 0.0028 23.5 5.5 26 85-110 46-71 (211)
85 COG3182 PiuB Uncharacterized i 30.5 77 0.0017 29.0 4.2 64 48-111 127-209 (442)
86 PF13630 SdpI: SdpI/YhfL prote 30.5 60 0.0013 21.3 2.8 29 83-111 19-47 (76)
87 PRK13554 fumarate reductase cy 30.5 2.8E+02 0.0061 23.3 7.3 105 47-153 23-149 (241)
88 PTZ00127 cytochrome c oxidase 30.4 3.9E+02 0.0085 23.9 8.7 47 52-103 349-395 (403)
89 TIGR00910 2A0307_GadC glutamat 29.4 1.7E+02 0.0036 26.7 6.2 16 144-159 452-467 (507)
90 PF06923 GutM: Glucitol operon 28.4 57 0.0012 24.0 2.5 21 54-74 3-23 (109)
91 PRK10639 formate dehydrogenase 28.0 3.2E+02 0.0069 21.9 11.8 136 13-154 13-174 (211)
92 CHL00070 petB cytochrome b6 27.0 3.6E+02 0.0078 22.2 8.2 63 49-111 30-106 (215)
93 PF12553 DUF3742: Protein of u 26.7 88 0.0019 20.3 2.9 17 140-156 4-20 (54)
94 PRK02983 lysS lysyl-tRNA synth 26.5 5E+02 0.011 26.6 9.5 25 132-156 204-228 (1094)
95 PF07857 DUF1632: CEO family ( 26.2 2.8E+02 0.0061 23.4 6.7 60 91-156 78-139 (254)
96 PF04531 Phage_holin_1: Bacter 25.9 2.3E+02 0.0051 19.7 6.6 60 83-153 4-63 (84)
97 CHL00045 ccsA cytochrome c bio 24.0 4.8E+02 0.01 22.6 12.0 27 83-109 132-158 (319)
98 TIGR00351 narI respiratory nit 23.7 4.1E+02 0.009 21.8 7.6 47 25-73 96-142 (224)
99 COG4244 Predicted membrane pro 23.6 3.2E+02 0.0069 21.7 6.1 94 14-113 47-144 (160)
100 PLN03100 Permease subunit of E 22.6 3.9E+02 0.0084 23.1 6.9 82 51-141 47-129 (292)
101 PF06609 TRI12: Fungal trichot 22.4 5.5E+02 0.012 24.4 8.5 57 53-111 196-259 (599)
102 TIGR00766 ribonuclease, putati 22.4 2.7E+02 0.0058 22.8 5.8 82 21-110 170-254 (263)
103 COG1290 QcrB Cytochrome b subu 22.3 5.7E+02 0.012 22.9 9.6 61 51-111 37-111 (381)
104 PF11381 DUF3185: Protein of u 21.7 1E+02 0.0022 20.4 2.5 54 93-146 2-57 (59)
105 TIGR00780 ccoN cytochrome c ox 21.2 6.5E+02 0.014 23.1 11.6 86 23-112 17-116 (474)
106 PRK10588 hypothetical protein; 20.8 3.4E+02 0.0074 19.8 6.0 74 20-102 16-91 (97)
107 COG4097 Predicted ferric reduc 20.6 1.5E+02 0.0033 27.1 4.1 19 86-104 74-92 (438)
108 PRK03735 cytochrome b6; Provis 20.6 3.5E+02 0.0075 22.4 6.0 61 51-111 40-114 (223)
109 PF03729 DUF308: Short repeat 20.6 2.3E+02 0.005 17.7 6.5 13 135-147 58-70 (72)
110 COG2322 Predicted membrane pro 20.2 4.7E+02 0.01 21.1 8.3 95 16-113 47-144 (177)
No 1
>PLN02810 carbon-monoxide oxygenase
Probab=100.00 E-value=1.9e-51 Score=337.65 Aligned_cols=164 Identities=45% Similarity=0.873 Sum_probs=156.2
Q ss_pred CeeeeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCC
Q 031055 1 MLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGS 80 (166)
Q Consensus 1 il~yR~~~~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~ 80 (166)
||+||++|.+|+.+|.+|+.+|.+|++|+++|++++|++||++++|||||+|||+|++|+++|.+||+.|++.|++|+.+
T Consensus 66 IL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~ 145 (231)
T PLN02810 66 IMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGS 145 (231)
T ss_pred HHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 68999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCC--CC
Q 031055 81 KNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPEN--GK 158 (166)
Q Consensus 81 ~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~l~n~~Gl~~~~~~~~v~~~~~~~~~--~~ 158 (166)
++.|++++|+|+++|+++|+|+++|+++|++||.+|.++++| +++|+|++++|++|+++++||++|+++++.+.. |+
T Consensus 146 ~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~-~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~~~~~~~ 224 (231)
T PLN02810 146 TNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGL-DKYGSEALLVNFTAIITILYGAFVVLTALAQSPSDED 224 (231)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-CCCCchhhhHHHHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 999999999999999999999999999999999999887777 999999999999999999999999999998755 67
Q ss_pred CcccccC
Q 031055 159 SEVLRAS 165 (166)
Q Consensus 159 ~~~~~~~ 165 (166)
|+.|.++
T Consensus 225 ~~~~~~~ 231 (231)
T PLN02810 225 DYSYSAI 231 (231)
T ss_pred ccccccC
Confidence 7777654
No 2
>PLN02351 cytochromes b561 family protein
Probab=100.00 E-value=7.6e-50 Score=330.33 Aligned_cols=158 Identities=50% Similarity=0.945 Sum_probs=149.5
Q ss_pred CeeeeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC
Q 031055 1 MLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKG-IDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG 79 (166)
Q Consensus 1 il~yR~~~~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~-~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~ 79 (166)
||+||.+|.+|+.+|.+|+.+|.+|++|+++|+++ ++||+.+ +|||||+|||+|++|+++|.+||++|+.+|++|+.
T Consensus 70 ILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~ 147 (242)
T PLN02351 70 ILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGE 147 (242)
T ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 68999999888889999999999999999999999 7777765 69999999999999999999999999999999999
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcc-ccccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 031055 80 SKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTN-HVISRYSTEALLVNSLGILIVVLGGFVILALITPENGK 158 (166)
Q Consensus 80 ~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~-~~~~~~~~e~~l~n~~Gl~~~~~~~~v~~~~~~~~~~~ 158 (166)
+.+.|++++|+|+++|+++|+|+++|+++|+.||++|.+++ +| +++|+|++++|++|+++++||++|++++++|+|||
T Consensus 148 ~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y-~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~~kr 226 (242)
T PLN02351 148 MRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNV-SKHGSESMVVNGLGLGLALLSGIVILAAVLPKYQS 226 (242)
T ss_pred chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccCCchhhhHHHHHHHHHHHHHHHHHhhcCccccC
Confidence 99999999999999999999999999999999999999865 55 99999999999999999999999999999999987
Q ss_pred Ccc
Q 031055 159 SEV 161 (166)
Q Consensus 159 ~~~ 161 (166)
|++
T Consensus 227 ~~~ 229 (242)
T PLN02351 227 HSS 229 (242)
T ss_pred CCc
Confidence 654
No 3
>PLN02680 carbon-monoxide oxygenase
Probab=100.00 E-value=2.3e-49 Score=326.57 Aligned_cols=158 Identities=85% Similarity=1.420 Sum_probs=150.8
Q ss_pred CeeeeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCC
Q 031055 1 MLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGS 80 (166)
Q Consensus 1 il~yR~~~~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~ 80 (166)
||+||..|.+|+.+|.+|+.+|.+|++|+++|++++|++||++++|||||+|||+|++|++++.+||++|+.+|++|+.+
T Consensus 66 IL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~ 145 (232)
T PLN02680 66 MLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGS 145 (232)
T ss_pred HhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 68999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 031055 81 KNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPENGK 158 (166)
Q Consensus 81 ~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~l~n~~Gl~~~~~~~~v~~~~~~~~~~~ 158 (166)
++.|++++|+|+++|+++|+|+++|+.+|+.||++|.++++.++++|+|++++|++|+++++||.+|++.++.|...+
T Consensus 146 ~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V~~~v~~p~~~~ 223 (232)
T PLN02680 146 RNSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFVILAIVTPLNGK 223 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999999986533389999999999999999999999999999997644
No 4
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=5e-49 Score=321.82 Aligned_cols=159 Identities=43% Similarity=0.778 Sum_probs=151.5
Q ss_pred CeeeeecC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc--CCCCccchhhHHHHHHHHHHHHHhhhhhhheeec
Q 031055 1 MLAYKTVS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDK--GIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYP 77 (166)
Q Consensus 1 il~yR~~~-~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~--~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p 77 (166)
||+||.+| .+|+.+|.+|+.+|.+|++|+++|++++|++||++ ++|||||+|||+|++|++++.+||+.|+++|++|
T Consensus 43 iLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P 122 (214)
T cd08764 43 ILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFP 122 (214)
T ss_pred HHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999998 46778899999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 031055 78 GGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPENG 157 (166)
Q Consensus 78 ~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~l~n~~Gl~~~~~~~~v~~~~~~~~~~ 157 (166)
+.+++.|++++|+|+++|+++|+++++|+.+|+.||.+|.+++ | +++|+|++++|++|+++++||++|++++++|+|+
T Consensus 123 ~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~-~-~~~~~e~~l~N~~gl~~~~fg~~V~~~~~~~~~k 200 (214)
T cd08764 123 GLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNK-Y-SNLPAEGVLGNFIGIVLVIFGGLVVYLVTEPDYK 200 (214)
T ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c-ccCChhHHHHHHHHHHHHHHHHHHHHhccCcccC
Confidence 9899999999999999999999999999999999999999864 6 9999999999999999999999999999999998
Q ss_pred CCcc
Q 031055 158 KSEV 161 (166)
Q Consensus 158 ~~~~ 161 (166)
||+.
T Consensus 201 r~~~ 204 (214)
T cd08764 201 RIEL 204 (214)
T ss_pred CCCC
Confidence 8654
No 5
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=100.00 E-value=1.9e-48 Score=320.28 Aligned_cols=160 Identities=46% Similarity=0.837 Sum_probs=155.0
Q ss_pred CeeeeecC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC
Q 031055 1 MLAYKTVS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG 79 (166)
Q Consensus 1 il~yR~~~-~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~ 79 (166)
||+||.+| .+|+..|.+|..+|.+|++++++|++++|++||+++++||||+|||+|+.++++|.+||+.||.+|++|+.
T Consensus 74 iL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~ 153 (245)
T KOG1619|consen 74 ILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGS 153 (245)
T ss_pred eeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 68999988 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 031055 80 SKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPENGKS 159 (166)
Q Consensus 80 ~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~l~n~~Gl~~~~~~~~v~~~~~~~~~~~~ 159 (166)
+++.|++++|+|+++|+.+|+++++|+++|+.||.+|++.+++ +.+++|++++|++|+++++||++|++.+++|+|+||
T Consensus 154 ~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~~f~~~~~~-s~~~~e~~l~n~~gv~~il~g~~Vl~~v~~~~~kr~ 232 (245)
T KOG1619|consen 154 PESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKLTFLCFGDL-STKNPEGYLVNFLGVFIILFGVLVLTLVTPPPWKRP 232 (245)
T ss_pred CccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cccCHHHHHHHHHHHHHHHHHHHheEEEecCCCCCC
Confidence 9999999999999999999999999999999999999998866 899999999999999999999999999999999877
Q ss_pred cc
Q 031055 160 EV 161 (166)
Q Consensus 160 ~~ 161 (166)
+.
T Consensus 233 s~ 234 (245)
T KOG1619|consen 233 SE 234 (245)
T ss_pred CC
Confidence 64
No 6
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=100.00 E-value=2.6e-40 Score=258.24 Aligned_cols=119 Identities=41% Similarity=0.727 Sum_probs=113.8
Q ss_pred CeeeeecC---CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeec
Q 031055 1 MLAYKTVS---GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYP 77 (166)
Q Consensus 1 il~yR~~~---~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p 77 (166)
||+||.++ .+|+.+|++|+.+|.+|++|+++|++++|++||++++|||||+|||+|++|++++.+||++|+.+|++|
T Consensus 31 iL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P 110 (153)
T cd08765 31 IIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLP 110 (153)
T ss_pred HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 57899765 368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 031055 78 GGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQT 119 (166)
Q Consensus 78 ~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~ 119 (166)
+.+.+.|++++|||+++|+++|+|+++|+++|+.||++|+.+
T Consensus 111 ~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek~~f~~~ 152 (153)
T cd08765 111 VAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEKLIFSLK 152 (153)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999864
No 7
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.7e-40 Score=256.10 Aligned_cols=118 Identities=62% Similarity=1.193 Sum_probs=114.5
Q ss_pred CeeeeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCC
Q 031055 1 MLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGS 80 (166)
Q Consensus 1 il~yR~~~~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~ 80 (166)
||+||..|.+|+.+|++|+.+|.+|++|+++|++++|++||++++|||||+|||+|++|++++.+||+.|+.+|++|+.+
T Consensus 27 iL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~ 106 (144)
T cd08766 27 ILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGAS 106 (144)
T ss_pred HHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 57899999889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 031055 81 KNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQ 118 (166)
Q Consensus 81 ~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~ 118 (166)
++.|++++|+|+++|+++|+++++|+++|+.||.+|.+
T Consensus 107 ~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek~~f~~ 144 (144)
T cd08766 107 RNTRAALLPWHVFLGLAIYYLAIATAETGLLEKLTFLQ 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999864
No 8
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=8.6e-40 Score=260.56 Aligned_cols=120 Identities=42% Similarity=0.689 Sum_probs=115.4
Q ss_pred CeeeeecCC---CcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeec
Q 031055 1 MLAYKTVSG---TKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYP 77 (166)
Q Consensus 1 il~yR~~~~---~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p 77 (166)
||+||.+|. +|+.+|.+|+.+|.+|++|+++|++++|++||++++|||||+|||+|++|+++|.+||+.|+.+|++|
T Consensus 54 iL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 54 ALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred HHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589998873 68889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 031055 78 GGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTN 120 (166)
Q Consensus 78 ~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~ 120 (166)
+++++.|++++|+|+++|+++|+|+++|+++|+.||++|..++
T Consensus 134 ~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek~~f~~~~ 176 (179)
T cd08762 134 WAPMWLRALVKPIHVFFGAMILVLSIASCISGINEKLFFSLKN 176 (179)
T ss_pred CCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999865
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=3.8e-38 Score=243.85 Aligned_cols=117 Identities=35% Similarity=0.695 Sum_probs=112.7
Q ss_pred CeeeeecC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC
Q 031055 1 MLAYKTVS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG 79 (166)
Q Consensus 1 il~yR~~~-~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~ 79 (166)
||+||+.| .+|+.+|++|+.+|.+|++|+++|+.+++++||++++|||||+|||+|++|++++.+||+.|+.+|++|+.
T Consensus 26 iL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~ 105 (143)
T cd08763 26 LLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGA 105 (143)
T ss_pred HHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 57899988 57899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 031055 80 SKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFL 117 (166)
Q Consensus 80 ~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~ 117 (166)
+++.|+.++|+||++|+++|+++++|+.+|++||.+|+
T Consensus 106 ~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek~~f~ 143 (143)
T cd08763 106 SFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEKLLFN 143 (143)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999874
No 10
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.94 E-value=1.6e-26 Score=174.46 Aligned_cols=110 Identities=48% Similarity=0.810 Sum_probs=102.2
Q ss_pred CeeeeecC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC
Q 031055 1 MLAYKTVS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG 79 (166)
Q Consensus 1 il~yR~~~-~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~ 79 (166)
+++||.+| .+|+.++++|+.+|.++++++++|+.+++++|++++.+||+|+|||+|+++++++++|++.|+..++.|..
T Consensus 21 il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~ 100 (131)
T cd08554 21 LLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLL 100 (131)
T ss_pred HHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46788876 46889999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 031055 80 SKNGRASLLPWHVFLGVYIYALAVATAATGI 110 (166)
Q Consensus 80 ~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl 110 (166)
+++.|+.+.++|+++|+++++++++|+.+|+
T Consensus 101 ~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 101 RLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6667899999999999999999999999984
No 11
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.93 E-value=5.5e-26 Score=171.77 Aligned_cols=116 Identities=36% Similarity=0.506 Sum_probs=106.4
Q ss_pred eeeee--cC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecC
Q 031055 2 LAYKT--VS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPG 78 (166)
Q Consensus 2 l~yR~--~~-~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~ 78 (166)
+++|. .+ .+|+.++++|..+|.++++++++|+++++.+|++++.+||+|+|+|+|+++++++.+|++.|++.++.|+
T Consensus 19 l~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~ 98 (137)
T PF03188_consen 19 LAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPG 98 (137)
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCC
Confidence 45564 22 3678899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 031055 79 GSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFL 117 (166)
Q Consensus 79 ~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~ 117 (166)
.+.+.|+.+.++|+++|+++++++++|+.+|+.|+..|.
T Consensus 99 ~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~~~f~ 137 (137)
T PF03188_consen 99 LPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEKAWFK 137 (137)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 777788899999999999999999999999999998773
No 12
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.93 E-value=6.6e-26 Score=180.47 Aligned_cols=103 Identities=29% Similarity=0.415 Sum_probs=97.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCC--CCccch
Q 031055 10 TKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSK--NGRASL 87 (166)
Q Consensus 10 ~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~--~~r~~~ 87 (166)
+|+.++++|+.+|.++++++++|+++++.+|+++++|||+|+|||+|+++++++.+|++.|+..++.|+..+ +.|+.+
T Consensus 53 ~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~ 132 (183)
T cd08761 53 ARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKL 132 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHH
Confidence 688899999999999999999999999999999999999999999999999999999999999998887543 788889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH
Q 031055 88 LPWHVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 88 ~p~H~~~G~~~~~L~i~t~~lGl~e 112 (166)
+++||++|+++++++++|+.+|++|
T Consensus 133 ~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 133 KKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999998
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.92 E-value=2.5e-25 Score=167.88 Aligned_cols=109 Identities=41% Similarity=0.696 Sum_probs=99.4
Q ss_pred eeeee-cC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC
Q 031055 2 LAYKT-VS-GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG 79 (166)
Q Consensus 2 l~yR~-~~-~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~ 79 (166)
+++|. .+ .+|+.++.+|+.+|.++++++++|+++++++|++.+.+||+|+|||+|+++++++++|++.|++.+..|+.
T Consensus 19 l~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~ 98 (129)
T smart00665 19 LVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGL 98 (129)
T ss_pred HHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 55673 33 46788999999999999999999999999999998889999999999999999999999999999887766
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 031055 80 SKNGRASLLPWHVFLGVYIYALAVATAATGI 110 (166)
Q Consensus 80 ~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl 110 (166)
+.+.|+.+.++|+++|+++++++++|+.+|+
T Consensus 99 ~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 99 PSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 6778888999999999999999999999985
No 14
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.80 E-value=7.2e-19 Score=140.45 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=93.6
Q ss_pred eeeeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCC
Q 031055 2 LAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSK 81 (166)
Q Consensus 2 l~yR~~~~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~ 81 (166)
+++|.++..++.++++|+.+|.++++++++|+.+++.++ +.+.++++|.|+|+|++++++..+|++.|++. |...+
T Consensus 56 l~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~---~~~~~ 131 (191)
T cd08760 56 LLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGIIVLALAILQPLLGLLR---PHPGS 131 (191)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhc---CCCCC
Confidence 456765555778899999999999999999999999987 55778999999999999999999999999954 44344
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 031055 82 NGRASLLPWHVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 82 ~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~e 112 (166)
+.|+...++|+++|+++++++++|+.+|+.+
T Consensus 132 ~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~ 162 (191)
T cd08760 132 KKRSIWNWAHRWLGRAALILAIVNIFLGLDL 162 (191)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777789999999999999999999999985
No 15
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=97.46 E-value=0.0054 Score=45.92 Aligned_cols=121 Identities=21% Similarity=0.235 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHH
Q 031055 17 VHLSLQFIAFLL-SLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLG 95 (166)
Q Consensus 17 iH~~l~~~al~~-~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G 95 (166)
.|..+.++++.+ .-.|+...-...+..+.+....+|-++.++++++...=...++.. . ....++.+.-.|.++|
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~----~-~~~~~~~~~s~H~~lG 75 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFIS----H-NESGIANFYSLHSWLG 75 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----c-cccCCCCccchhHHHH
Confidence 489999999955 445555533213334567888899999999999887666666643 1 2222355677999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhccccccCCCchHHHHH----HHHHHHHHHHHHHHH
Q 031055 96 VYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVN----SLGILIVVLGGFVIL 149 (166)
Q Consensus 96 ~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~l~n----~~Gl~~~~~~~~v~~ 149 (166)
..++++.......|+.. +..... ..+.....| .+|.++.+.+.+-.+
T Consensus 76 l~~~~l~~~Q~~~G~~~---~~~~~~----~~~~r~~~~~~H~~~G~~~~~la~~~~~ 126 (129)
T smart00665 76 LAAFVLAGLQWLSGFLR---PLPPGL----PSKYRSYLNPYHRFVGLAAFILAIVTIF 126 (129)
T ss_pred HHHHHHHHHHHHHHHHH---hcCCcc----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999973 211100 011112222 888888887776543
No 16
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=97.34 E-value=0.00081 Score=49.59 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--cchhhHHHHHHHHHHHHHhhhhhhh
Q 031055 16 LVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNF--YSLHSWLGLACVFLFGIQWAAGFTT 73 (166)
Q Consensus 16 ~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~--~S~HswlGl~t~~L~~lQ~~~G~~~ 73 (166)
+.|...|++++++.++|+.....+++. .||+ .+.|+.+|.+.+++..+|+++|++.
T Consensus 45 r~~~~~q~~~~~l~~~g~~~g~~~~~~--~p~lyp~n~H~k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 45 RWHLPVQTVFLVLMILGLFLGSVYNGS--TPDLYPNNAHGKMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999997766553 3566 7899999999999999999999864
No 17
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=97.27 E-value=0.0051 Score=46.04 Aligned_cols=92 Identities=24% Similarity=0.379 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhc-cccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHH
Q 031055 17 VHLSLQFIAFLLSL-IGVWAALKFH-NDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFL 94 (166)
Q Consensus 17 iH~~l~~~al~~~~-iGl~av~~~~-~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 94 (166)
.|.+++++|+.+.. .|+.+.-.++ +..+.+.....|..+-++.+++..+=.+..+.. . +.+.++.+.-.|.+.
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~----~-~~~~~~h~~s~H~~l 75 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFIN----K-NRNGKPHFKSWHSIL 75 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHh----c-cccCCCCCCCchhhh
Confidence 49999999998655 5555544322 233567888899999998888776555555532 1 222334556699999
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 031055 95 GVYIYALAVATAATGILEK 113 (166)
Q Consensus 95 G~~~~~L~i~t~~lGl~ek 113 (166)
|.+++++.+...+.|+...
T Consensus 76 G~~~~~l~~~Q~~~G~~~~ 94 (137)
T PF03188_consen 76 GLATFVLALLQPLLGFFRF 94 (137)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999854
No 18
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.15 E-value=0.018 Score=44.65 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHH
Q 031055 14 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVF 93 (166)
Q Consensus 14 ~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~ 93 (166)
....|..++.+++++...--..+++.....+++...-.|.+++++++++.. .|+..-+... .+...+.+.-.|-|
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~----~Gl~av~~~h-~~~~~~hf~SlHsw 80 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISL----VGLVAVFDYH-QANGYPDMYSLHSW 80 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHH----HHHHHHHHHc-cccCCCccccHHHH
Confidence 567899999999998777667777654444555667799999999888765 4554322222 23345567779999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchHHHHH--HHHHHHHHHHHHHHH
Q 031055 94 LGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVN--SLGILIVVLGGFVIL 149 (166)
Q Consensus 94 ~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~l~n--~~Gl~~~~~~~~v~~ 149 (166)
+|+.++++-......|+.. |...+.. ++. ++.+.-. +.|+.+.+.+++...
T Consensus 81 lGl~t~~L~~lQ~~~G~~~---f~~P~~~-~~~-r~~~~p~H~~~G~~~f~la~~t~~ 133 (143)
T cd08763 81 CGILTFVLYFLQWLIGFSF---FLFPGAS-FTL-RSQYKPLHEFFGRALFLSSVGTSL 133 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHcCCCc-hHH-HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864 3221100 111 1222212 777777666655543
No 19
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=97.12 E-value=0.019 Score=42.94 Aligned_cols=125 Identities=22% Similarity=0.157 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHH
Q 031055 16 LVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLG 95 (166)
Q Consensus 16 ~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G 95 (166)
..|..++.+++++...-...+.+.-+..+++...-+|..+..++..+..+=...++.. . ..+.++.+.-.|.++|
T Consensus 3 ~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~----~-~~~~~~h~~s~Hs~lG 77 (131)
T cd08554 3 NWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLF----H-NAGGIANLYSLHSWLG 77 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-cccCcccchhHHHHHH
Confidence 4699999999874444333444432333455667799999998888777555555532 1 2334456777999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhccccccC-CCchHHHHHHHHHHHHHHHHHHHH
Q 031055 96 VYIYALAVATAATGILEKVTFLQTNHVISR-YSTEALLVNSLGILIVVLGGFVIL 149 (166)
Q Consensus 96 ~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~-~~~e~~l~n~~Gl~~~~~~~~v~~ 149 (166)
++++++..+....|+... +..+.. ++ .+.-...=...|.++.+.+....+
T Consensus 78 l~~~~l~~~q~~~G~~~~--~~~~~~--~~~r~~~~~~H~~~G~~~~~la~~t~~ 128 (131)
T cd08554 78 LATVLLFLLQFLSGFVLF--LLPLLR--LSYRSSLLPFHRFFGLAIFVLAIATIL 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHH--Hhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998752 111110 11 011111222788887777666543
No 20
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.75 E-value=0.074 Score=42.13 Aligned_cols=135 Identities=18% Similarity=0.137 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhh
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALKFHND---KGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLP 89 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~~~~~---~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p 89 (166)
.....|..++.+++.+..-.....++..+. .+++.-.-+|.++..+++.+..+=....+.. + ....++.+.-
T Consensus 19 ~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~----~-~~~~~~hf~s 93 (183)
T cd08761 19 SLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYN----K-ERNGKPHFTS 93 (183)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----c-ccCCCCCccc
Confidence 456799999999999776666665553221 2455677899999998888765433333321 2 2233455667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchHHHHH-HHHHHHHHHHHHHHHHhccC
Q 031055 90 WHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVN-SLGILIVVLGGFVILALITP 154 (166)
Q Consensus 90 ~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~l~n-~~Gl~~~~~~~~v~~~~~~~ 154 (166)
+|.++|..++++.+.+...|+.....- ...+- ++.++.-.... ..|.++.+.+.+-...-.+.
T Consensus 94 ~H~~lGl~~~~l~~~Q~~~G~~~~~~~-~~~~~-~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 94 WHGILGLVTVILIVLQALGGLALLYPP-GLRRG-ESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhH-HHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999643211 11000 01111111122 78888877777766655544
No 21
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=96.75 E-value=0.024 Score=45.43 Aligned_cols=91 Identities=24% Similarity=0.215 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHH
Q 031055 15 KLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFL 94 (166)
Q Consensus 15 k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 94 (166)
+..|.-+=...+.+...|..-.-..-..++.+-|.|.|-|.|+..+.|..++....-. ..++ .+...++.|...
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~--i~~g----~~~~~R~lHi~l 153 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQ--IQKG----NRPWARRLHIYL 153 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHH--HccC----CchhHHHHHHHH
Confidence 5566644444444443333332111112233479999999999999999988766543 2222 344666799999
Q ss_pred HHHHHHHHHHHHHHhHH
Q 031055 95 GVYIYALAVATAATGIL 111 (166)
Q Consensus 95 G~~~~~L~i~t~~lGl~ 111 (166)
+..++++-..-+.+|..
T Consensus 154 N~~~l~Lf~~q~itG~~ 170 (175)
T PF13301_consen 154 NSLALLLFAWQAITGWR 170 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999986
No 22
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=96.65 E-value=0.031 Score=43.08 Aligned_cols=144 Identities=17% Similarity=0.141 Sum_probs=90.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh----hccccCCCCccchhhHHHHHHHHHHHHHhhhhhhh--------------
Q 031055 12 KLRKLVHLSLQFIAFLLSLIGVWAALK----FHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTT-------------- 73 (166)
Q Consensus 12 ~~~k~iH~~l~~~al~~~~iGl~av~~----~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~-------------- 73 (166)
...+..|+..=.+-+++.+.|+...+. .......+....+|-++|++.+++..+..+.++..
T Consensus 6 ~~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T PF00033_consen 6 LFTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQI 85 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHH
Confidence 346789999999999999999998743 22222446788899999999999999999999987
Q ss_pred ---eeecCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcc-ccccCCCc--hHHHHH---HHHHHHHHHH
Q 031055 74 ---FWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTN-HVISRYST--EALLVN---SLGILIVVLG 144 (166)
Q Consensus 74 ---fl~p~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~-~~~~~~~~--e~~l~n---~~Gl~~~~~~ 144 (166)
...++.+....+...+..+..-.+++.+.++.+++|+.- ..+.... ......++ .....+ ..+.+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~-~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i 164 (188)
T PF00033_consen 86 PQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM-LWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFI 164 (188)
T ss_dssp HHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC------TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 122222233445566788888888999999999999873 0000000 00011111 112222 6777777777
Q ss_pred HHHHHHhccCCC
Q 031055 145 GFVILALITPEN 156 (166)
Q Consensus 145 ~~v~~~~~~~~~ 156 (166)
++-++.+...+.
T Consensus 165 ~~Hi~~a~~~~~ 176 (188)
T PF00033_consen 165 IIHIYAAIFHHF 176 (188)
T ss_dssp HHHHHHHHHBT-
T ss_pred HHHHHHHHHHhh
Confidence 777777766544
No 23
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.47 E-value=0.16 Score=40.26 Aligned_cols=95 Identities=28% Similarity=0.334 Sum_probs=71.3
Q ss_pred CcchhHHHHHHHHHHHHHHHH-HHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchh
Q 031055 10 TKKLRKLVHLSLQFIAFLLSL-IGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLL 88 (166)
Q Consensus 10 ~k~~~k~iH~~l~~~al~~~~-iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~ 88 (166)
++......|..++.+|+.+.. +|..++-.+ ..+.+...-+|-.+=++++++...=..+|+... ...++...
T Consensus 31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~--~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~------~~~~~~~~ 102 (191)
T cd08760 31 SSDTLIKAHGVLMAIAWGILMPIGALLARYF--LLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV------QGGGGSLN 102 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCCCc
Confidence 356678999999999998865 555554332 123445556899999988888887788887643 22344566
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHH
Q 031055 89 PWHVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 89 p~H~~~G~~~~~L~i~t~~lGl~e 112 (166)
..|.++|.+++++.+.....|+..
T Consensus 103 ~~H~~lGl~~~~l~~lQ~~~G~~~ 126 (191)
T cd08760 103 NAHAILGIIVLALAILQPLLGLLR 126 (191)
T ss_pred CcchhhhHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999864
No 24
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=96.37 E-value=0.0002 Score=63.93 Aligned_cols=105 Identities=22% Similarity=0.237 Sum_probs=85.3
Q ss_pred eeeecCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC
Q 031055 3 AYKTVSGT---KKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG 79 (166)
Q Consensus 3 ~yR~~~~~---k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~ 79 (166)
.-|.++.. ...+..+|..+|..++++...|+...-+.-++ ....-++.|.-+|+.+.++-++|++..+. -|..
T Consensus 233 ~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~-s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~---Rp~~ 308 (403)
T KOG4293|consen 233 IARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNE-SDGTVYSAHTDLGIILLVLAFLQPLALLL---RPLP 308 (403)
T ss_pred eEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccC-CCceeeeecccchhHHHHHHHHHHHHHHh---cCCc
Confidence 45666643 56788999999999988888888876554443 44588999999999999999999988774 3765
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 80 SKNGRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 80 ~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
..+.|+..-.||+..|+...+++++|+.-|+.
T Consensus 309 ~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~ 340 (403)
T KOG4293|consen 309 ESKIRRYWNWYHHLVGRLSIILGIVNIFDGLE 340 (403)
T ss_pred ccCceeccceeeeecCcceeeehhhHHhhhHh
Confidence 55566667779999999999999999999987
No 25
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.07 E-value=0.15 Score=39.54 Aligned_cols=96 Identities=22% Similarity=0.135 Sum_probs=66.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhH
Q 031055 11 KKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPW 90 (166)
Q Consensus 11 k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~ 90 (166)
+......|-.++.+++++...=-..+++.-. ..++.-...|.++=++++++.. .|+..-+... .....+.+.-+
T Consensus 4 ~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~-~~k~~~k~iH~~l~~la~~~~v----vGl~avf~~~-~~~~~~~~~Sl 77 (144)
T cd08766 4 KGLIFNVHPVLMVIGFIFLAGEAILAYKTVP-GSREVQKAVHLTLHLVALVLGI----VGIYAAFKFH-NEVGIPNLYSL 77 (144)
T ss_pred CcceeeccHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHHHHHHH----HHHHHHHHHh-cccCccccccH
Confidence 4455678999999998776655555666422 2333446689999888777654 4544322222 23344567779
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 031055 91 HVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 91 H~~~G~~~~~L~i~t~~lGl~e 112 (166)
|.|+|+.++++-......|+..
T Consensus 78 HSwlGl~t~~L~~lQ~~~G~~~ 99 (144)
T cd08766 78 HSWLGIGTISLFGLQWLFGFVT 99 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 26
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.67 E-value=0.26 Score=40.71 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=65.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhhee-ecCCCCCCccchhh
Q 031055 11 KKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFW-YPGGSKNGRASLLP 89 (166)
Q Consensus 11 k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl-~p~~~~~~r~~~~p 89 (166)
+......|..++.+++++...=-..+++.-...++......|.++.++++++.. .|+..-+ .-...+...+.+.-
T Consensus 20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~i----vGl~avf~~hn~~~~~~~hfyS 95 (214)
T cd08764 20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAV----IGLKAVFDSHNLAKPPIPNMYS 95 (214)
T ss_pred CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccCCCCcccc
Confidence 334568999999999976554444455532222333456799999999888765 3433211 11112224456777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 031055 90 WHVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 90 ~H~~~G~~~~~L~i~t~~lGl~e 112 (166)
.|-|+|+.+++|-......|+..
T Consensus 96 lHSwlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 96 LHSWLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 27
>PLN02680 carbon-monoxide oxygenase
Probab=95.44 E-value=0.27 Score=41.14 Aligned_cols=96 Identities=21% Similarity=0.086 Sum_probs=66.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhH
Q 031055 11 KKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPW 90 (166)
Q Consensus 11 k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~ 90 (166)
+......|-.++.+++++...-...+++... ..++.-...|-++=.+++++.. .|+..-+... .++..+.+.-+
T Consensus 43 ~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~-~~k~~~K~iH~~L~~lA~~l~v----vGl~avfk~h-n~~~~~nfySl 116 (232)
T PLN02680 43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKTVP-GTKNLKKLVHLTLQFLAFCLSL----IGVWAALKFH-NEKGIDNFYSL 116 (232)
T ss_pred CcceEechHHHHHHHHHHHHHHHHhcccccc-ccchhHHHHHHHHHHHHHHHHH----HHHHHHHHhc-cccCccccccH
Confidence 3445678999999999995544444554322 2344557789888887777663 4554422212 33345667779
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 031055 91 HVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 91 H~~~G~~~~~L~i~t~~lGl~e 112 (166)
|-|+|+.++++-......|+..
T Consensus 117 HSWlGl~t~iL~~lQ~~~Gf~~ 138 (232)
T PLN02680 117 HSWLGLACLFLFSLQWAAGFVT 138 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975
No 28
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=94.72 E-value=0.019 Score=34.56 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=24.2
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhheeec
Q 031055 47 NFYSLHSWLGLACVFLFGIQWAAGFTTFWYP 77 (166)
Q Consensus 47 h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p 77 (166)
.+..+|.|+|+++-.++++..+.|.+..+.|
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4667889999988888888888888765544
No 29
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=93.62 E-value=2.3 Score=33.47 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHhhcc--ccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhH
Q 031055 14 RKLVHLSLQFIAFLLSLIGVWA-ALKFHN--DKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPW 90 (166)
Q Consensus 14 ~k~iH~~l~~~al~~~~iGl~a-v~~~~~--~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~ 90 (166)
....|-.++.+++++ +-|-.+ +++.-. ...++.-...|-++=.+++++.. .|+..-+... .....+.+.-+
T Consensus 11 ~Fn~HPlLm~~Gfi~-l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i----~Gl~avf~~h-n~~~~~~fySl 84 (153)
T cd08765 11 EFNWHPVLMVIGFIF-IQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAI----ISVVAVFVFH-NAKNIPNMYSL 84 (153)
T ss_pred eeechHHHHHHHHHH-HHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHH----HHHHHHHHHc-cccCCCccccH
Confidence 567899999999998 444444 554211 12244567789888777776654 4554322222 23345677789
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 031055 91 HVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 91 H~~~G~~~~~L~i~t~~lGl~e 112 (166)
|-|+|+.++++-......|+..
T Consensus 85 HSwlGl~t~~l~~lQ~~~Gf~~ 106 (153)
T cd08765 85 HSWVGLAAVILYPLQLVLGISV 106 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 30
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=93.19 E-value=0.16 Score=29.79 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=25.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 83 GRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 83 ~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
+|+....+|++.|..+.+..+.-+++|..
T Consensus 1 ~r~~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 1 FRKFWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678889999999999999999999975
No 31
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=93.05 E-value=3.3 Score=33.45 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-cCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHH
Q 031055 14 RKLVHLSLQFIAFLLSLIGVWAALKFHN-D-KGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWH 91 (166)
Q Consensus 14 ~k~iH~~l~~~al~~~~iGl~av~~~~~-~-~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H 91 (166)
....|-.+..+++++..-=..++|+.-. . .++.-....|..+=.+++++-. .|+..-+-.. .+...+.+.-+|
T Consensus 34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~v----vGl~avf~~h-n~~~~~nlySlH 108 (179)
T cd08762 34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTV----IGLCAVFNFH-NVHHTANLYSLH 108 (179)
T ss_pred ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHH----HHHHHHHHhc-cccCccchhhHH
Confidence 6789999999999988444444665221 1 1222345789988887776544 4443322212 233446677799
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 031055 92 VFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 92 ~~~G~~~~~L~i~t~~lGl~e 112 (166)
-|+|+.+..+-......|+..
T Consensus 109 SWlGl~t~~Lf~lQ~~~Gf~~ 129 (179)
T cd08762 109 SWVGICTVALFTCQWVMGFTS 129 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999975
No 32
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=92.58 E-value=0.22 Score=29.88 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=25.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 84 RASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 84 r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
|+.+...|+|.|+.+-++-.+-+.+|..
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~ 28 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAV 28 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5678899999999999999999999975
No 33
>PLN02351 cytochromes b561 family protein
Probab=92.44 E-value=4.1 Score=34.37 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHH
Q 031055 16 LVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLG 95 (166)
Q Consensus 16 ~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G 95 (166)
..|-.+..+++++..-=-+.+++.-...+ +-....|-++=.+++++- +.|+..-+. ...+..+.+.-+|-|+|
T Consensus 52 n~HP~lMviGfi~L~geAILvYR~~~~~~-k~~K~lH~~Lh~~Ali~~----vvGl~a~fh--~~~~~i~nlySLHSWlG 124 (242)
T PLN02351 52 VLHPLLMVIGFILISGEAILVHRWLPGSR-KTKKSVHLWLQGLALASG----VFGIWTKFH--GQDGIVANFYSLHSWMG 124 (242)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhcccccc-hHHHHHHHHHHHHHHHHH----HHHHHHHHh--cccCCccchhHHHHHHH
Confidence 59999999999987766666776533222 236778988876666654 466655111 11112355788999999
Q ss_pred HHHHHHHHHHHHHhHHH
Q 031055 96 VYIYALAVATAATGILE 112 (166)
Q Consensus 96 ~~~~~L~i~t~~lGl~e 112 (166)
+.++++-...-..|+..
T Consensus 125 l~tv~Lf~lQwv~Gf~~ 141 (242)
T PLN02351 125 LICVSLFGAQWLTGFMS 141 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999985
No 34
>PLN02810 carbon-monoxide oxygenase
Probab=91.35 E-value=3.3 Score=34.74 Aligned_cols=95 Identities=19% Similarity=0.106 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHH
Q 031055 12 KLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWH 91 (166)
Q Consensus 12 ~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H 91 (166)
......|-.+..+++++.-.=-..+|+.-.. .+......|.++=.+++++-. .|+..-+-.. .+...+.+.-+|
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~-~k~~~K~iH~~lh~~Al~l~v----vGl~Avf~~H-n~~~i~nlySLH 117 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL-KKEVKKLIHLVLHAIALILGI----FGICAAFKNH-NESGIANLYSLH 117 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhcccc-ccchHHHHHHHHHHHHHHHHH----HHHHHHHHhc-cccCCCceeeHH
Confidence 3456789888888888777666667754322 233457788887776666543 3443322112 223445677799
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 031055 92 VFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 92 ~~~G~~~~~L~i~t~~lGl~e 112 (166)
-|.|+.+..+-...-..|+..
T Consensus 118 SWlGl~tv~Lf~lQw~~Gf~~ 138 (231)
T PLN02810 118 SWLGIGIISLYGIQWIYGFIV 138 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999853
No 35
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=89.44 E-value=7.6 Score=29.31 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHH
Q 031055 15 KLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFL 94 (166)
Q Consensus 15 k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 94 (166)
+.....--..|.++.+.|+.-.+.. .+.| ..++-+-..++|++..+.-...+..++...-+..+.
T Consensus 4 ~~~r~~~~~~~~~~i~~gi~~l~~~---------~~~~------~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~ 68 (136)
T PF08507_consen 4 NIFRILNIIAGILLILAGILSLFNS---------FSFS------SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYI 68 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---------hhHH------HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHH
Confidence 3344444555555555555544432 2223 222223334566655544222222555566688999
Q ss_pred HHHHHHHHHHHHHHhH
Q 031055 95 GVYIYALAVATAATGI 110 (166)
Q Consensus 95 G~~~~~L~i~t~~lGl 110 (166)
|+..+.+-+++...+.
T Consensus 69 GRGlfyif~G~l~~~~ 84 (136)
T PF08507_consen 69 GRGLFYIFLGTLCLGQ 84 (136)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999988888777765
No 36
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=89.31 E-value=4 Score=31.16 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhhhhee---ecCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 031055 58 ACVFLFGIQWAAGFTTFW---YPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 58 ~t~~L~~lQ~~~G~~~fl---~p~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~e 112 (166)
+..+++.+|.+.|+..+. ........++...-+|.++|.+..++.+.=...++.+
T Consensus 14 ~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 14 LNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp HHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455567777778886642 2223445667788899999999999999999998887
No 37
>PRK11513 cytochrome b561; Provisional
Probab=89.22 E-value=4.4 Score=32.05 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHH
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHV 92 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~ 92 (166)
..+.+||..=.+-+.....|.......+ ...+.++++|-.+|+++..+..+..+..+.. --|..+.+.++.....=+
T Consensus 8 ~~~~lHWl~a~li~~~~~~~~~~~~~~~--~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~-~~P~~~~~~~~~~~~~A~ 84 (176)
T PRK11513 8 LQIGIHWLVFLLVIVAYCAMEFRGFFPR--SDRPLINMIHVSCGISILVLMVVRLLLRLKY-PTPPIVPKPKPMMTGLAH 84 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCCCCHHHHHHHH
Confidence 4578999543333333333322211111 1223577999999999999999999999853 233322221111111111
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 031055 93 FLGVYIYALAVATAATGIL 111 (166)
Q Consensus 93 ~~G~~~~~L~i~t~~lGl~ 111 (166)
..-.+.+++-++..++|+.
T Consensus 85 ~~H~~LY~lli~~plsG~~ 103 (176)
T PRK11513 85 LGHLVIYLLFIALPVIGLV 103 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2225677888888888886
No 38
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=89.16 E-value=2.7 Score=29.99 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhhhhh-eeecCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 031055 55 LGLACVFLFGIQWAAGFTT-FWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGI 110 (166)
Q Consensus 55 lGl~t~~L~~lQ~~~G~~~-fl~p~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl 110 (166)
+|.+.+.++.++.+.|.=. .+-+..+.+. ++...+||+.|+.+++++++=...=+
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~-~~~~~~Hr~lg~~~~~~~~~H~~~~~ 56 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISF-DRLLRFHRWLGRLAFFLALLHGVLYL 56 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888888876200 0001111122 33455999999999999887655433
No 39
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=88.71 E-value=3.9 Score=32.98 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=31.1
Q ss_pred HHHHHHhhhhhhheeecCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 61 FLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 61 ~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
.++..|++.|...-..|+ ....+..+..+|..+|.+++.|.+.=++..+.
T Consensus 21 llv~~~~~~g~~~~~~~~-~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~ 70 (181)
T COG3038 21 LLVIGAFALGELMGFLPR-GPGLYFLLYELHKSIGILVLALMVLRLLWRLR 70 (181)
T ss_pred HHHHHHHHHHHHHHHccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555566665555555 33355566677777777777777776666654
No 40
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=88.26 E-value=9.7 Score=29.06 Aligned_cols=57 Identities=16% Similarity=0.045 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--cchhhHHHHHHHHHHHHHhhhh
Q 031055 14 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNF--YSLHSWLGLACVFLFGIQWAAG 70 (166)
Q Consensus 14 ~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~--~S~HswlGl~t~~L~~lQ~~~G 70 (166)
....||..=..-+.+...|+..-............ ..+|-++|++...+...=.+..
T Consensus 6 ~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 6 TRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34577777666666666666664443332222222 5677777776666665444444
No 41
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=87.18 E-value=11 Score=28.67 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhhhheeecCCCCCCccc--hhhHHHHHHHHHHHHHHHHHHHh
Q 031055 59 CVFLFGIQWAAGFTTFWYPGGSKNGRAS--LLPWHVFLGVYIYALAVATAATG 109 (166)
Q Consensus 59 t~~L~~lQ~~~G~~~fl~p~~~~~~r~~--~~p~H~~~G~~~~~L~i~t~~lG 109 (166)
....+..|.+.|+..+.-+. ....... ...+|.++|.+.+.+.+.-....
T Consensus 13 ~a~~~i~l~~tG~~~~~~~~-~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 13 NALSFIALIATGLWIHFPPP-GLYFGDFGGVRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHHHHHHHHHHHHHHhcccc-cccccccchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667775544322 1111111 35667777777777777666666
No 42
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=84.00 E-value=5 Score=28.98 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 84 RASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 84 r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
|++.-..||..|++-..+.+.++.+|+.
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~ 29 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALF 29 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 4555679999999999999999999975
No 43
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=83.98 E-value=4.8 Score=28.03 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 87 LLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 87 ~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
...+|+..|....+..++-+.+|..
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999999976
No 44
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=82.44 E-value=6.5 Score=27.35 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-hcc-------cc--CCCCccchhhHHHHHHHHHHHHHhhhhhhh
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALK-FHN-------DK--GIDNFYSLHSWLGLACVFLFGIQWAAGFTT 73 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~-~~~-------~~--~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~ 73 (166)
..+.+=...=.+.+++.+.|++.-.. ..+ +. +....+.+|..+|+.+....++-.+.|...
T Consensus 15 ~G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 15 WGRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRRWFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677777788888899998753 111 11 112267899999999999888888888753
No 45
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=82.10 E-value=11 Score=28.76 Aligned_cols=88 Identities=20% Similarity=0.117 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHH---HHHHHHHHHHhhhhhhhe---eecCCCCCCccchhh
Q 031055 16 LVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLG---LACVFLFGIQWAAGFTTF---WYPGGSKNGRASLLP 89 (166)
Q Consensus 16 ~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlG---l~t~~L~~lQ~~~G~~~f---l~p~~~~~~r~~~~p 89 (166)
.+.+.++.++.++..+|..++-+.+.+ .|...= .+...+|+.-++..-... -++ ++...|..+.+
T Consensus 6 ~l~a~~~~~s~~ll~~g~~~Ir~~~~~--------~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~-g~~~ir~~Y~~ 76 (133)
T PF04238_consen 6 DLNAVLNAISAVLLLIGWYFIRRGRIK--------LHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFG-GPGWIRPVYLF 76 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC-CCccHHHHHHH
Confidence 477899999999999999998643321 243322 222223333333322110 111 24455554444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhHHH
Q 031055 90 ---WHVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 90 ---~H~~~G~~~~~L~i~t~~lGl~e 112 (166)
.|..+-..+..+.+.|...|+.+
T Consensus 77 iL~~Hi~LA~~~~pL~l~tl~~a~~~ 102 (133)
T PF04238_consen 77 ILISHIILAIVALPLVLYTLYRALRG 102 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 69999999999999999999886
No 46
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=82.09 E-value=8.7 Score=27.43 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHHHHHHHH
Q 031055 22 QFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYAL 101 (166)
Q Consensus 22 ~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~L 101 (166)
-..+++.++.|+.....-..+.+..+--..|.++|+.++.++.+=... .++... ++.+ ...|.=..+..+..++
T Consensus 13 ~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~l~~w---~~~~r~--~~~~-~~~~~~l~ls~~~~~l 86 (104)
T PF09990_consen 13 LLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLLLAIW---RWLWRR--RDPR-AVSPFGLALSLLGVVL 86 (104)
T ss_pred HHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh--CCCc-cccHHHHHHHHHHHHH
Confidence 345566666677766665444445566778999999999888762111 112111 1111 3344444555555555
Q ss_pred HHHHHHHh
Q 031055 102 AVATAATG 109 (166)
Q Consensus 102 ~i~t~~lG 109 (166)
...+..+|
T Consensus 87 l~~~g~lG 94 (104)
T PF09990_consen 87 LLVTGWLG 94 (104)
T ss_pred HHHHHHhH
Confidence 55565555
No 47
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=81.94 E-value=18 Score=29.22 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC----CCCCccchh
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG----SKNGRASLL 88 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~----~~~~r~~~~ 88 (166)
....+||..-.+-+.....|....+..+.+...-.++.+|=.+|+.+..|..+-.+..+.. --|.. +...|..-+
T Consensus 11 ~~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~-~~p~~~~~~~~~~~~aA~ 89 (181)
T COG3038 11 VQIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRN-PAPPIVPGPPPWQRKAAK 89 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCCChHHHHHHH
Confidence 4567999988888888888888877766554445889999999999999999888777743 22221 111222333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHH
Q 031055 89 PWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 89 p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
-.| .+++++-++--++|+.
T Consensus 90 ~~H----l~LY~l~lalPlsG~l 108 (181)
T COG3038 90 LGH----LALYLLMLALPLSGYL 108 (181)
T ss_pred HHH----HHHHHHHHHHHHHHHH
Confidence 345 4556666666667743
No 48
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=78.32 E-value=35 Score=27.77 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=45.3
Q ss_pred ccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 031055 42 DKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAA 107 (166)
Q Consensus 42 ~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~ 107 (166)
..|.+-..+.--..|..++.++.++.+.+-+.-..+ ...+.++||..|...+..++.=..
T Consensus 34 ~lg~~p~~~~~~~tG~~Al~llll~l~l~pL~~l~~------~~~l~~~RR~LGl~af~~a~lH~~ 93 (205)
T PRK05419 34 GLGADPVKDIEHFTGLWALVFLLATLAVTPLRRLTG------QPLLIRTRRLLGLWAFFYATLHLL 93 (205)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777899999999999988876543322 236889999999999999887664
No 49
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=78.29 E-value=23 Score=27.87 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc-C------CCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC-------
Q 031055 14 RKLVHLSLQFIAFLLSLIGVWAALKFHNDK-G------IDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG------- 79 (166)
Q Consensus 14 ~k~iH~~l~~~al~~~~iGl~av~~~~~~~-~------~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~------- 79 (166)
.+..||..=..-+++.+.|+.......... + ...+..+|-++|++.+++...=.+.++..- .|..
T Consensus 7 ~R~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~rl~~~~~~~-~~~~~r~~~~~ 85 (211)
T TIGR02125 7 VRLFHWVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLFRVYLAFVGK-DSRYERFSFRD 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cchhhHHhhcC
Confidence 467899877777777788887643221100 1 123568999999988887776665555430 0100
Q ss_pred CCCCcc-------------------chhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCC------------c
Q 031055 80 SKNGRA-------------------SLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYS------------T 128 (166)
Q Consensus 80 ~~~~r~-------------------~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~------------~ 128 (166)
+.+.++ .+-|.-+..-.+++++.++..++|+.--. ...+. +..+ .
T Consensus 86 ~~~~~~~~~~~~~y~~~~~~~~~~~~~n~~~k~~~~~l~~~~~~~~lTG~~~~~---~~~~~-~~~~~~~f~~~~~~~~~ 161 (211)
T TIGR02125 86 PLNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFGFIVLILFMILTGLALYY---YHNGL-GGLLPSLFGWVEPLFGG 161 (211)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCC-CchHHHHHHHHHHHhCC
Confidence 011000 11355666777788888889999976311 00000 1111 1
Q ss_pred hHH--HH-HHHHHHHHHHHHHHHHHhccCCC
Q 031055 129 EAL--LV-NSLGILIVVLGGFVILALITPEN 156 (166)
Q Consensus 129 e~~--l~-n~~Gl~~~~~~~~v~~~~~~~~~ 156 (166)
+.. .+ ..++.+++++.++-++++...+.
T Consensus 162 ~~~~~~iH~~~a~~l~~~i~~Hi~~a~~h~~ 192 (211)
T TIGR02125 162 LANVRFIHHLGMWAFVIFVPVHVYMAVREDI 192 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11 26677777787777888876544
No 50
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=77.57 E-value=3.6 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=14.0
Q ss_pred cchhhHHHHHHHHHHHHHhhhhh
Q 031055 49 YSLHSWLGLACVFLFGIQWAAGF 71 (166)
Q Consensus 49 ~S~HswlGl~t~~L~~lQ~~~G~ 71 (166)
..+|.|++.++..++.+-.+.|+
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGL 24 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666655555555
No 51
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=75.49 E-value=45 Score=27.52 Aligned_cols=86 Identities=17% Similarity=0.051 Sum_probs=47.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC-------CCC
Q 031055 10 TKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG-------SKN 82 (166)
Q Consensus 10 ~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~-------~~~ 82 (166)
.+......|-.+..++.+.+.+.+..-.+.+. ..+|..+..+..+-...+. +..|.. +..
T Consensus 21 g~~p~~n~~e~~~~~aw~~~~~~l~~~~~~~~-----------~~l~~~~~p~~~~~~~~~~--~~~p~~~~~~~~l~p~ 87 (243)
T TIGR03144 21 GHFPLSNLYESLLFLSWSLSLIYLILERKYKL-----------RVLGAFVAPLALLILGFAS--LVLPVEMQQSTPLVPA 87 (243)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHH--HccccccccccccchH
Confidence 34455667778888888888888777665333 1466666554443333333 222431 222
Q ss_pred CccchhhHHHHH---HHHHHHHHHHHHHH
Q 031055 83 GRASLLPWHVFL---GVYIYALAVATAAT 108 (166)
Q Consensus 83 ~r~~~~p~H~~~---G~~~~~L~i~t~~l 108 (166)
.++.....|..+ |+..+.++.+++++
T Consensus 88 l~s~wl~iHv~~a~l~ya~~~la~~~a~l 116 (243)
T TIGR03144 88 LQSNWLMMHVSVMILSYAALLVGSLLSIA 116 (243)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566789855 55555555444443
No 52
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=74.26 E-value=3.5 Score=23.92 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.3
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhh
Q 031055 47 NFYSLHSWLGLACVFLFGIQWAAGFT 72 (166)
Q Consensus 47 h~~S~HswlGl~t~~L~~lQ~~~G~~ 72 (166)
.+..+|-|+|+.+....++..+.|+.
T Consensus 4 ~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 4 FWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999988875
No 53
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=74.08 E-value=6.6 Score=29.66 Aligned_cols=65 Identities=22% Similarity=0.388 Sum_probs=44.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCC
Q 031055 9 GTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGS 80 (166)
Q Consensus 9 ~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~ 80 (166)
++++..+.+|.+...+..++.+++++.+|.+-.++..|- |=.+++ ++.+.-....++.+|+.++.
T Consensus 22 E~~~r~riinliiG~vT~l~VLvtii~afvf~~~~p~p~----~iffav---cI~l~~~s~~lLI~WYR~gd 86 (118)
T PF10856_consen 22 ETSARDRIINLIIGAVTSLFVLVTIISAFVFPQDPPKPL----HIFFAV---CILLICISAILLIFWYRQGD 86 (118)
T ss_pred CCCcccEEEEeehHHHHHHHHHHHHhheEEecCCCCCce----EEehHH---HHHHHHHHHHhheeehhcCC
Confidence 345556689999999999999999999888776554432 333443 34444445566778886543
No 54
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=72.70 E-value=47 Score=26.54 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=57.2
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCC
Q 031055 47 NFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRY 126 (166)
Q Consensus 47 h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~ 126 (166)
.....|-.+|...++++.+-.+.|...-+... .+.+..-|-+.|..+..|-..+..+.-. ++.++++ ..
T Consensus 78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~-----~~lf~spH~~~Gl~~~~L~~~s~al~~~---i~~g~~~---~~ 146 (175)
T PF13301_consen 78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQN-----GKLFWSPHLWAGLAVVGLMAFSAALVPQ---IQKGNRP---WA 146 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcC-----CCCccCchHHHHHHHHHHHHHHHHHHHH---HccCCch---hH
Confidence 34678999999999999999999987544322 1233445999999999988888776643 2332221 12
Q ss_pred CchHHHHHHHHHHHHHH
Q 031055 127 STEALLVNSLGILIVVL 143 (166)
Q Consensus 127 ~~e~~l~n~~Gl~~~~~ 143 (166)
.+--+..|++.+++.+.
T Consensus 147 R~lHi~lN~~~l~Lf~~ 163 (175)
T PF13301_consen 147 RRLHIYLNSLALLLFAW 163 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 24456777766665544
No 55
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=71.51 E-value=50 Score=26.36 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc-----ccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC--------
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALKFHN-----DKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG-------- 79 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~~~~-----~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~-------- 79 (166)
..+..||..-..-+++.+.|+...+..-. ..+.+....+|-++|++.+.+++.-.+. ..-...|..
T Consensus 8 ~~r~~HW~~a~~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~i~~~~~-~~~~~~~~~~d~~~~~~ 86 (204)
T TIGR01583 8 FDRILHWIAAISFLILVFTGFVMMFGKFFWLGVILGELWVAKNLHPFAGILFFISIIPMFLK-WWRRMIPAKYDIRWMMK 86 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHH
Confidence 45678999888888888889888654211 0112345668999999887766544221 111112210
Q ss_pred ----------CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchH-----HHHHHHHHHHHHHH
Q 031055 80 ----------SKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEA-----LLVNSLGILIVVLG 144 (166)
Q Consensus 80 ----------~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~-----~l~n~~Gl~~~~~~ 144 (166)
+......+-|..+..-..++++.++.+++|+.--. +.... ...+.+. .+=...+.+++++.
T Consensus 87 ~~~y~~~~~~~~p~~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~~-~~~~~---~~~~~~~~~~~~~~H~~~a~l~~~~v 162 (204)
T TIGR01583 87 VGGYLSKIKRPVPSAGKYNAGQKSWYWILVLGGFLMIITGIFMWF-LDFPS---TAFSIELLRISALIHNFSAIILAVGF 162 (204)
T ss_pred hchHhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHccc---ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123346778888888888888999999987321 00010 1122211 12226677777777
Q ss_pred HHHHHHhccC
Q 031055 145 GFVILALITP 154 (166)
Q Consensus 145 ~~v~~~~~~~ 154 (166)
++-+|.+..+
T Consensus 163 i~Hiy~a~~~ 172 (204)
T TIGR01583 163 IVHIYMAVFG 172 (204)
T ss_pred HHHHHHHHhc
Confidence 7788877763
No 56
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=69.10 E-value=7.9 Score=30.27 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=37.7
Q ss_pred CCCCccchhhHHHHHHHH--HHHHHhhhhhhheeecCCCCCCccc--hhhHHHHHHHHHHHHHH
Q 031055 44 GIDNFYSLHSWLGLACVF--LFGIQWAAGFTTFWYPGGSKNGRAS--LLPWHVFLGVYIYALAV 103 (166)
Q Consensus 44 ~~~h~~S~HswlGl~t~~--L~~lQ~~~G~~~fl~p~~~~~~r~~--~~p~H~~~G~~~~~L~i 103 (166)
..|.+.+- =.+|++|+. ++..|+.+|+-. .-.+.|+..+.+ -.--|..+|..+++-+.
T Consensus 87 ~~Pt~~~a-li~G~~tvl~p~~imqP~lG~G~-aas~tP~p~~~r~~sl~aH~vfG~gLyl~~~ 148 (150)
T PF11158_consen 87 SRPTLLPA-LIFGLVTVLAPFFIMQPALGAGI-AASKTPNPWKARLRSLIAHLVFGLGLYLSAL 148 (150)
T ss_pred cCCchHHH-HHHHHHHHHHHHHHHHHHHhcch-hhccCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555543 247888777 899999999943 222334434333 34579999999988664
No 57
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=66.73 E-value=47 Score=24.19 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=57.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHH-HHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccc
Q 031055 8 SGTKKLRKLVHLSLQFIAFLLS-LIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRAS 86 (166)
Q Consensus 8 ~~~k~~~k~iH~~l~~~al~~~-~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~ 86 (166)
+++++..-..|..++.+++... -+|+..... + .+||--.=.+..++..+-+.+|.. + .+++ ..
T Consensus 11 ~~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~--~-------sr~~~~~q~~~~~l~~~g~~~g~~---~-~~~~---p~ 74 (105)
T PF10348_consen 11 PSPHRSALYAHIVLMTLAWVILYPIGLVLGNA--R-------SRWHLPVQTVFLVLMILGLFLGSV---Y-NGST---PD 74 (105)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHc--c-------chHHHHHHHHHHHHHHHHHHHHHH---H-hcCC---CC
Confidence 4457777899999999987654 456554322 1 235665544444455555555543 1 2111 11
Q ss_pred hhh--HHHHHHHHHHHHHHHHHHHhHHHH
Q 031055 87 LLP--WHVFLGVYIYALAVATAATGILEK 113 (166)
Q Consensus 87 ~~p--~H~~~G~~~~~L~i~t~~lGl~ek 113 (166)
+.| .|.-+|..++++.++....|+..|
T Consensus 75 lyp~n~H~k~g~il~~l~~~q~~~gv~~~ 103 (105)
T PF10348_consen 75 LYPNNAHGKMGWILFVLMIVQVILGVILK 103 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 323 899999999999999999998754
No 58
>PLN02631 ferric-chelate reductase
Probab=65.31 E-value=84 Score=30.46 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=21.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhH
Q 031055 85 ASLLPWHVFLGVYIYALAVATAATGI 110 (166)
Q Consensus 85 ~~~~p~H~~~G~~~~~L~i~t~~lGl 110 (166)
..+..+|||.|+.+++++++=.+.=+
T Consensus 186 e~~i~yHRWlGri~~~la~iH~i~y~ 211 (699)
T PLN02631 186 ESSIKYHIWLGHVSNFLFLVHTVVFL 211 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999987655443
No 59
>PRK11513 cytochrome b561; Provisional
Probab=65.23 E-value=65 Score=25.32 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 59 CVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 59 t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
+.+++..|++.|...-..|. +.+..+..+|..+|..++++.+.=...++.
T Consensus 16 ~a~li~~~~~~~~~~~~~~~---~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~ 65 (176)
T PRK11513 16 VFLLVIVAYCAMEFRGFFPR---SDRPLINMIHVSCGISILVLMVVRLLLRLK 65 (176)
T ss_pred HHHHHHHHHHHHHHHcccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566666666664433332 234566789999999999999988888775
No 60
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=59.50 E-value=58 Score=27.60 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHH
Q 031055 14 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVF 93 (166)
Q Consensus 14 ~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~ 93 (166)
....|..++.++++..--=-..+++.-....++--...|.++=++++++-. .|+.+-+..- .....+.+.-.|-|
T Consensus 54 ~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i----~gl~avf~~h-n~~~i~NfySLHSW 128 (245)
T KOG1619|consen 54 EFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAI----IGLCAVFDSH-NLVGIANFYSLHSW 128 (245)
T ss_pred hcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh-hhcCccceeeHHHH
Confidence 445787777777665433333344441112233455678888777776654 3333322211 11123456668999
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 031055 94 LGVYIYALAVATAATGILE 112 (166)
Q Consensus 94 ~G~~~~~L~i~t~~lGl~e 112 (166)
.|++++++=.+.-..|+..
T Consensus 129 lGl~~v~ly~~Q~v~GF~t 147 (245)
T KOG1619|consen 129 LGLCVVILYSLQWVFGFFT 147 (245)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888875
No 61
>PRK13673 hypothetical protein; Provisional
Probab=58.07 E-value=13 Score=28.06 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=49.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccc
Q 031055 7 VSGTKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRAS 86 (166)
Q Consensus 7 ~~~~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~ 86 (166)
++..++..|.+|..+-..=++..+.|+....+.- .+.+-+|..-..+|+.++.+. +...+ + |++
T Consensus 23 ~s~~~~~~ki~hMilRLfyil~iiTG~~l~~~~~--~~~~~l~~~K~l~gi~vIg~m--Em~l~-------r-----~kk 86 (118)
T PRK13673 23 YSGGSKKAKILHMILRLFYILIIITGFWLLIRSF--GSNHMLYILKMLLGIIVIGLM--EMSLA-------K-----RKK 86 (118)
T ss_pred HhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHHH--HHHHH-------H-----HHc
Confidence 3333444567888888888888888877766542 123344556666776555543 22111 1 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 87 LLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 87 ~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
=+|-|.+++..+.++ +.|..+|+.
T Consensus 87 ~k~~~~~~~~~ii~l-vlti~lG~~ 110 (118)
T PRK13673 87 GKPTGGFWWIFIIVL-VLTILLGLI 110 (118)
T ss_pred CCCcccHHHHHHHHH-HHHHHHHHH
Confidence 134555555555543 566677764
No 62
>PRK10263 DNA translocase FtsK; Provisional
Probab=57.56 E-value=1.5e+02 Score=31.11 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHH--HHhhccccCCCCcc------chhhHHHHHHHH-HHHHHhhhhhhheeecC
Q 031055 18 HLSLQFIAFLLSLIGVWA--ALKFHNDKGIDNFY------SLHSWLGLACVF-LFGIQWAAGFTTFWYPG 78 (166)
Q Consensus 18 H~~l~~~al~~~~iGl~a--v~~~~~~~~~~h~~------S~HswlGl~t~~-L~~lQ~~~G~~~fl~p~ 78 (166)
|....+.+++|.++++.. .+.+.+-.+ |.|. ..|.|+|.+=-. --++-.++|+..|++|-
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsPsD-PSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~ 88 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNPSD-PSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV 88 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccC-CcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHHH
Confidence 445667777777777554 222222222 3443 257777765322 22223378887776663
No 63
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=57.04 E-value=1.2e+02 Score=29.49 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 031055 85 ASLLPWHVFLGVYIYALAVATAAT 108 (166)
Q Consensus 85 ~~~~p~H~~~G~~~~~L~i~t~~l 108 (166)
....++|+|.|+.+++++++=.+.
T Consensus 189 e~~i~fHrWlGr~~~llallH~i~ 212 (722)
T PLN02844 189 EASVRYHVWLGTSMIFFATVHGAS 212 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999987664
No 64
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=56.72 E-value=1.2e+02 Score=25.51 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhh
Q 031055 14 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAA 69 (166)
Q Consensus 14 ~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~ 69 (166)
....||..=.+-+++.+.|+...+..-.....+....+|-|.|.+.++..++-.+.
T Consensus 73 ~Rl~HW~~A~~fl~L~lTGl~i~~p~~~~~~~~~~~~iH~~~G~vf~~~~l~~~~~ 128 (261)
T PRK15006 73 VRLWHWSNALLFVLLLLSGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLI 128 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999985532211112234467999998777654443333
No 65
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=54.51 E-value=48 Score=21.47 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhhhhheeecCCC----CCCccchhhHHHHHHHHHHHHHHH
Q 031055 55 LGLACVFLFGIQWAAGFTTFWYPGGS----KNGRASLLPWHVFLGVYIYALAVA 104 (166)
Q Consensus 55 lGl~t~~L~~lQ~~~G~~~fl~p~~~----~~~r~~~~p~H~~~G~~~~~L~i~ 104 (166)
+=+..+..+..-.+.|+..+..|... ...|......|.+.|...+++...
T Consensus 5 i~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 5 INLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777788888877665422 123456778999999988887654
No 66
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=54.11 E-value=82 Score=26.56 Aligned_cols=76 Identities=18% Similarity=0.094 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHH
Q 031055 14 RKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVF 93 (166)
Q Consensus 14 ~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~ 93 (166)
....|-.+-.+.++..+.-.....+..++ ......+..+..+..+|.+.|+.+.+.-- | ..+...|..
T Consensus 225 v~~~Hr~~A~~~~~~~~~l~~~~~r~~~~-------~~~~~~~~~~~~ll~~Qv~lGi~~v~~~~-p----~~l~~~H~~ 292 (302)
T PF02628_consen 225 VQFIHRLLALLVLLLLLALAVRAWRRRRS-------RALRRLAVLLLALLLLQVLLGILTVLTGL-P----VWLALLHQA 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c----HHHHHHHHH
Confidence 34566655555444444433334433221 45778888889999999999999877521 2 246679999
Q ss_pred HHHHHHHH
Q 031055 94 LGVYIYAL 101 (166)
Q Consensus 94 ~G~~~~~L 101 (166)
.+.+++..
T Consensus 293 ~a~ll~~~ 300 (302)
T PF02628_consen 293 GAALLLAA 300 (302)
T ss_pred HHHHHHHH
Confidence 88877654
No 67
>PLN02292 ferric-chelate reductase
Probab=54.05 E-value=22 Score=34.37 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=18.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 031055 85 ASLLPWHVFLGVYIYALAVATAA 107 (166)
Q Consensus 85 ~~~~p~H~~~G~~~~~L~i~t~~ 107 (166)
..+.++|||.|+.+++++++=.+
T Consensus 203 e~f~~yHRWlGrii~ll~~lH~i 225 (702)
T PLN02292 203 ESSIKYHIWLGHLVMTLFTSHGL 225 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999887543
No 68
>COG3658 Cytochrome b [Energy production and conversion]
Probab=52.44 E-value=1.3e+02 Score=24.47 Aligned_cols=103 Identities=26% Similarity=0.400 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhe-------eecCC---------CCCCccchhhHHHHHHHH----HHHHHHHHHHHh
Q 031055 50 SLHSWLGLACVFLFGIQWAAGFTTF-------WYPGG---------SKNGRASLLPWHVFLGVY----IYALAVATAATG 109 (166)
Q Consensus 50 S~HswlGl~t~~L~~lQ~~~G~~~f-------l~p~~---------~~~~r~~~~p~H~~~G~~----~~~L~i~t~~lG 109 (166)
.+|-|+|..++.+..+-.+-|.... +-|+- .-..|+..-|-|.=.|.+ +..+-.++..+|
T Consensus 35 ~~H~wvGyav~allalRL~WG~igs~~ARf~af~pspa~a~~~lke~~~gr~~~h~gHNPlGAlmv~Amw~~l~~~v~TG 114 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGIIGSDTARFSAFVPSPAGAREYLKEGIPGREHIHPGHNPLGALMVVAMWALLLAQVGTG 114 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccccchhhhhccCCChHHHHHHHHhhccCCccCCCCCCchhHHHHHHHHHHHHHHHhhh
Confidence 6899999999999999999998643 22320 112234444556666654 455667788888
Q ss_pred HHHHH--Hhhhccccc----cCCC------chHHHHHHHHHHHHHHHHHHHHHhcc
Q 031055 110 ILEKV--TFLQTNHVI----SRYS------TEALLVNSLGILIVVLGGFVILALIT 153 (166)
Q Consensus 110 l~ek~--~f~~~~~~~----~~~~------~e~~l~n~~Gl~~~~~~~~v~~~~~~ 153 (166)
...+. +|.++ .+. +... --.-++|.+.+++++=...|+.....
T Consensus 115 ~lar~d~~~ged-~~~~~~~~~h~~~~~~evHet~~nll~vliaiHiAav~~~s~f 169 (192)
T COG3658 115 WLARDDNFWGED-WYLNHLVSEHTGSLMREVHETLANLLAVLIAIHIAAVAAMSVF 169 (192)
T ss_pred hhhhhhhhhccc-hhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76543 23332 221 1110 12457888888888776666555443
No 69
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=52.00 E-value=1.9e+02 Score=26.55 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=36.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhheeecCCC-CC-CccchhhHHHHHHHHHHHHHHHHHHHhH
Q 031055 48 FYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGS-KN-GRASLLPWHVFLGVYIYALAVATAATGI 110 (166)
Q Consensus 48 ~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~-~~-~r~~~~p~H~~~G~~~~~L~i~t~~lGl 110 (166)
|+-..++=|.+.+..+......|+..++.|+.. .+ ...++....-+.-....++++.+..+|.
T Consensus 86 f~~~rt~H~~~~if~w~~~~~~g~~~ylvp~~~g~~l~~~~l~~~~~w~~~~g~~l~~~~~~~G~ 150 (493)
T cd01661 86 FGRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRARLAGGNLAWFVFWGYNLFIVLAATGYLLGI 150 (493)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 555555556666666888888999888888732 22 2223333444454555555555555553
No 70
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=50.66 E-value=32 Score=20.52 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 031055 130 ALLVNSLGILIVVLGGFVILALI 152 (166)
Q Consensus 130 ~~l~n~~Gl~~~~~~~~v~~~~~ 152 (166)
..++|++|+... .++|+|-..
T Consensus 8 ~~lan~lG~~~~--~LIVlYH~v 28 (35)
T PF10215_consen 8 YTLANFLGVAAM--VLIVLYHFV 28 (35)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHh
Confidence 458999998854 455555443
No 71
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=48.84 E-value=1.2e+02 Score=23.14 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=62.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc-------------hhhHHHHHHHHHHHHHhhhhhhheeec
Q 031055 11 KKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYS-------------LHSWLGLACVFLFGIQWAAGFTTFWYP 77 (166)
Q Consensus 11 k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S-------------~HswlGl~t~~L~~lQ~~~G~~~fl~p 77 (166)
|+.+...|--.|..|+.++.+=+..-...|-..+..+|.. .|..+-.+++.+.......|+-.
T Consensus 27 r~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~---- 102 (133)
T PF04238_consen 27 RRGRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG---- 102 (133)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 4556679999999999888877777444444333323322 47777777777777777666632
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 78 GGSKNGRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 78 ~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
-..-||=.|+.++..=+.+..+|.-
T Consensus 103 ---------~~~~Hrki~r~t~piWlyvsvTGvv 127 (133)
T PF04238_consen 103 ---------RFTRHRKIGRWTFPIWLYVSVTGVV 127 (133)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346999999999999999999975
No 72
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=48.64 E-value=39 Score=23.83 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhh
Q 031055 24 IAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAG 70 (166)
Q Consensus 24 ~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G 70 (166)
-+++|..+.+-..+..++........||=.|+=++...-..++.++|
T Consensus 3 na~~c~~i~lrl~~yrr~garhr~~~s~lA~lli~~~~~~~i~~l~g 49 (83)
T PF05449_consen 3 NALICLAIALRLMFYRRNGARHRPWISWLAYLLIVAYGSVPIRILFG 49 (83)
T ss_pred HHHHHHHHHHHHheeecCCCccCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36788888888888777765566677777777666666666666666
No 73
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=44.97 E-value=1.1e+02 Score=21.48 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=23.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHH
Q 031055 86 SLLPWHVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 86 ~~~p~H~~~G~~~~~L~i~t~~lGl~e 112 (166)
.-.++=|..|...++.+++..+.++.+
T Consensus 38 D~~~l~r~~g~~~~~~~i~~li~~l~~ 64 (97)
T PF12650_consen 38 DKKKLCRFMGKFMLIIGIILLIGGLLS 64 (97)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999864
No 74
>PF14927 Neurensin: Neurensin
Probab=43.24 E-value=1.2e+02 Score=23.45 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=39.0
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH---HhhhccccccCCCchHHHHH-------HHHHHHHHHHHH
Q 031055 82 NGRASLLPWHVFLGVYIYALAVATAATGILEKV---TFLQTNHVISRYSTEALLVN-------SLGILIVVLGGF 146 (166)
Q Consensus 82 ~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~---~f~~~~~~~~~~~~e~~l~n-------~~Gl~~~~~~~~ 146 (166)
++....+++=-.+|.+..++|+++..+|+.-.- .+.....+ ....++++--| .+|+++...|.+
T Consensus 38 ~w~s~~wkV~~i~g~l~Ll~Gi~~l~vgY~vP~~~e~~~~~~~~-~~vD~~a~~~n~~Ld~c~laG~~L~~lGg~ 111 (140)
T PF14927_consen 38 RWSSVCWKVGFISGLLLLLLGIVALTVGYLVPPKIEVFGEAGEF-VVVDSQAARFNNALDTCKLAGLILLCLGGI 111 (140)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhcccCCcceeccccccc-cccchHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 334567778888999999999999999975211 12111111 22345666666 566666655443
No 75
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=41.56 E-value=1.9e+02 Score=23.41 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhhhhhheee--cCCC------------CCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 031055 54 WLGLACVFLFGIQWAAGFTTFWY--PGGS------------KNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQT 119 (166)
Q Consensus 54 wlGl~t~~L~~lQ~~~G~~~fl~--p~~~------------~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~ 119 (166)
.+|-++...+.+|.+.|++--++ |... .+....++..|++..-..+++...=..-|+.- .+
T Consensus 24 ~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~-----gs 98 (200)
T cd00284 24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYY-----GS 98 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 57999999999999999876543 4421 11223456689999888888877777766652 21
Q ss_pred cccccCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031055 120 NHVISRYSTEALLVNSLGILIVVLGGFVILA 150 (166)
Q Consensus 120 ~~~~~~~~~e~~l~n~~Gl~~~~~~~~v~~~ 150 (166)
| + .|.|. .=..|+++.+......+.
T Consensus 99 --Y-~-~pre~--~W~~G~~l~~l~~~~af~ 123 (200)
T cd00284 99 --Y-K-KPREL--TWVIGVILLLLTMATAFM 123 (200)
T ss_pred --h-c-chhHH--HHHHHHHHHHHHHHHHHc
Confidence 2 1 13333 235666666655554443
No 76
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=41.38 E-value=2e+02 Score=23.56 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCC------ccchhhHHHHHHHHHHHHHhhhhhhh
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALKFHNDKG-IDN------FYSLHSWLGLACVFLFGIQWAAGFTT 73 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~-~~h------~~S~HswlGl~t~~L~~lQ~~~G~~~ 73 (166)
.....||..=.+-+.+.+.|+......-...+ .+. ...+|-++|.+.+.+..+-.+.|+..
T Consensus 17 ~~Ri~HW~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~g 84 (235)
T PRK10171 17 PVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFVG 84 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34568999888888888889876322111111 011 13579999999999888888877753
No 77
>COG4244 Predicted membrane protein [Function unknown]
Probab=41.33 E-value=1.4e+02 Score=23.77 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=33.3
Q ss_pred hhhhhhheeecCCCCCCccchhhHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhccccccCCCchHHHHHHHHHHHHH
Q 031055 67 WAAGFTTFWYPGGSKNGRASLLPWHVFLGVY-IYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVV 142 (166)
Q Consensus 67 ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~-~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~l~n~~Gl~~~~ 142 (166)
.+.|++=++.-. +-..|+.-.-+|-..|.. .+++++.|......+ .++. ...++.+.+......+++.
T Consensus 66 ~~~g~~e~lla~-~~~~a~~~a~wh~~lG~il~~~la~~~~~r~~~~-----~~~~--~~v~~~~L~lsl~~~~Lv~ 134 (160)
T COG4244 66 VIAGLFEFLLAR-PGGAAKQAAEWHHVLGNILLIVLAILTAWRYVHR-----NDAV--AAVSPAGLLLSLATVLLVA 134 (160)
T ss_pred HHHHHHHHHHcC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCh--hhccHHHHHHHHHHHHHHH
Confidence 444554433311 222455555666665544 455677777664442 2222 4555656555544444443
No 78
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=39.59 E-value=2.1e+02 Score=23.26 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc----c-CCCCccchhhHHHHHHHHHHHHHhhhhhhheeecC---------
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALKFHND----K-GIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPG--------- 78 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~~~~~----~-~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~--------- 78 (166)
.....||..-..-++|++.|+.+.+-.-.- - +...--.+|-+.|.+.++.+..- +.-+..-..|.
T Consensus 13 ~~Ri~HW~~a~s~i~L~~TGl~i~~p~~~~~~~~~g~~~~~r~iH~~~g~vf~~~~~~~-~~~~~~~~~~~~~D~~~~~~ 91 (217)
T PRK10179 13 IDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM-FVRFVHHNIPDKKDIPWLLN 91 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHH
Confidence 445689999999999999999997653211 0 11112348999998866533331 11111101111
Q ss_pred ------C-CC--CCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchH-----HHHHHHHHHHHHHH
Q 031055 79 ------G-SK--NGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEA-----LLVNSLGILIVVLG 144 (166)
Q Consensus 79 ------~-~~--~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~-----~l~n~~Gl~~~~~~ 144 (166)
. +. .....+-|..+.....+++++++-+++|+. +-+.... ..+|.+. .+=+..++++++|.
T Consensus 92 ~~~~~~~~~~~~p~~gk~N~~QKl~y~~i~~~~~~~i~TGl~--l~~~~~~---~~~~~~~~r~a~~iH~~~a~l~~~fi 166 (217)
T PRK10179 92 IVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI--IWRPYFA---QYFPMQVVRYSLLIHAAAGIILIHAI 166 (217)
T ss_pred HHHHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhh---hhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11 112346778888888888888899999986 2111111 2233221 22237788888888
Q ss_pred HHHHHHhccC
Q 031055 145 GFVILALITP 154 (166)
Q Consensus 145 ~~v~~~~~~~ 154 (166)
++-+|.+...
T Consensus 167 ivHiY~a~~~ 176 (217)
T PRK10179 167 LIHMYMAFWV 176 (217)
T ss_pred HHHHHHHhcc
Confidence 8888887643
No 79
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=37.35 E-value=2.8e+02 Score=24.24 Aligned_cols=91 Identities=19% Similarity=0.075 Sum_probs=56.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhh
Q 031055 10 TKKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLP 89 (166)
Q Consensus 10 ~k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p 89 (166)
+......+|-..-...+.....-++...+.-. ..++. -|.+...++++.+|...|+.+.+.-. + -.+..
T Consensus 225 ~~~~vq~~Hr~~a~~~~~~~l~~~~~~~r~~~--~~~~~----~~~~~~l~~lv~~Q~~~Gi~tv~~~v-p----l~~a~ 293 (323)
T COG1612 225 SPETVQFVHRLGAYLVFVAALLLLVAALRRAP--LTRAA----RTRAVVLLALVTLQAALGILTVLLGV-P----LALAL 293 (323)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHhccc--cchhH----HHHHHHHHHHHHHHHHHHHHHHHhcc-h----HHHHH
Confidence 34455667766666555555555444444222 22222 25677888899999999999877532 1 23667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 031055 90 WHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 90 ~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
.|.....+++...+.-+..+..
T Consensus 294 ~H~~~~~~ll~~~~~~a~~~~r 315 (323)
T COG1612 294 AHQAAALVLLATALLHAWLLAR 315 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 8999666666666665555544
No 80
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=36.37 E-value=1.5e+02 Score=21.20 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCccchhhHHHHHHHHHHHHHhhhhh
Q 031055 11 KKLRKLVHLSLQFIAFLLSLIGVWAALKFHND-KGIDNFYSLHSWLGLACVFLFGIQWAAGF 71 (166)
Q Consensus 11 k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~-~~~~h~~S~HswlGl~t~~L~~lQ~~~G~ 71 (166)
|+....+=-++..++++.++.|+.--+-+|-- .+.|.|-+-=+.+|+..=+++ |+.|.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~~~~~L~Lp~~~~~gal~~IFiGAll---WL~GA 61 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVVMVGGIGYSILSQIPQLGLPQFLAHGALFSIFIGALL---WLVGA 61 (89)
T ss_pred chhhHHHhhHHHHHhHHHHHHhHHHHHHHhcccCCCcHHHHhhHHHHHHHHHHH---HHhcc
Confidence 33444555688999999999999887776653 477888877777777554444 66665
No 81
>PRK10692 hypothetical protein; Provisional
Probab=35.67 E-value=1.5e+02 Score=21.34 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCccchhhHHHHHHHHHHHHHhhhhh
Q 031055 12 KLRKLVHLSLQFIAFLLSLIGVWAALKFHND-KGIDNFYSLHSWLGLACVFLFGIQWAAGF 71 (166)
Q Consensus 12 ~~~k~iH~~l~~~al~~~~iGl~av~~~~~~-~~~~h~~S~HswlGl~t~~L~~lQ~~~G~ 71 (166)
+....+=-++..++++.++.|+.--+-+|-- .+.|.|-+-=+.+|+..=+++ |+.|.
T Consensus 4 k~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAll---WL~GA 61 (92)
T PRK10692 4 KNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALL---WLAGA 61 (92)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHH---HHhcc
Confidence 3444555678899999999999987776653 477888887788887655544 66665
No 82
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=34.19 E-value=1.5e+02 Score=22.48 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 51 LHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 51 ~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
.|=.+|.+|..+.....+.++ .+|.. .-.|.|.+++..+.+..+.++++=.-
T Consensus 30 inliiG~vT~l~VLvtii~af---vf~~~------~p~p~~iffavcI~l~~~s~~lLI~W 81 (118)
T PF10856_consen 30 INLIIGAVTSLFVLVTIISAF---VFPQD------PPKPLHIFFAVCILLICISAILLIFW 81 (118)
T ss_pred EEeehHHHHHHHHHHHHhheE---EecCC------CCCceEEehHHHHHHHHHHHHhheee
Confidence 567899999998888777666 45542 23478999999999888888887654
No 83
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=33.74 E-value=1.5e+02 Score=21.86 Aligned_cols=51 Identities=27% Similarity=0.499 Sum_probs=38.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHH
Q 031055 11 KKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLF 63 (166)
Q Consensus 11 k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~ 63 (166)
.+..|..|..+-..=++..+.|+....+. .++.|-++..-..+|+.++.+.
T Consensus 29 ~k~~k~~~MilRl~YlliiisG~~L~~~~--~~~~~~l~~iK~l~gl~vI~lm 79 (110)
T PF07457_consen 29 TKKAKILHMILRLFYLLIIISGVWLFIRT--FAGNPMLYIIKMLLGLIVIGLM 79 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHHHHHHHHHHHHHHH
Confidence 36778889999988888888888887764 2245677777777777766654
No 84
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=32.84 E-value=1.3e+02 Score=23.53 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=21.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhH
Q 031055 85 ASLLPWHVFLGVYIYALAVATAATGI 110 (166)
Q Consensus 85 ~~~~p~H~~~G~~~~~L~i~t~~lGl 110 (166)
...+.+|..+|....++.++-...++
T Consensus 46 ~~~~~~H~~~G~~~~~l~l~rl~~~~ 71 (211)
T TIGR02125 46 GYIRFVHFAAGFVLIAVLLFRVYLAF 71 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667999999999998888776665
No 85
>COG3182 PiuB Uncharacterized iron-regulated membrane protein [Function unknown]
Probab=30.50 E-value=77 Score=28.99 Aligned_cols=64 Identities=30% Similarity=0.341 Sum_probs=36.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhe--------eecCCC-----------CCCccchhhHHHHHHHHHHHHHHHHHHH
Q 031055 48 FYSLHSWLGLACVFLFGIQWAAGFTTF--------WYPGGS-----------KNGRASLLPWHVFLGVYIYALAVATAAT 108 (166)
Q Consensus 48 ~~S~HswlGl~t~~L~~lQ~~~G~~~f--------l~p~~~-----------~~~r~~~~p~H~~~G~~~~~L~i~t~~l 108 (166)
+.++|+.+.+-+...+++....+.... +.|+.. ++.|...+-+|+..|..+-.+-..=+.+
T Consensus 127 ~~~LH~~L~~g~~G~ylve~aa~~~i~~lVsG~~L~~pr~r~~~~~~~~r~~~~~R~fw~D~H~v~G~w~~~~~l~l~~t 206 (442)
T COG3182 127 MRELHSDLLLGTVGDYLVELAALLLIVLLVSGLYLWWPRRRKWRGLLTVRPGKRARRFWRDLHAVLGLWCSLLFLFLALT 206 (442)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhheeeeecccccccceeeccccccchHHHHHhhccchHHHHHHHHHHHH
Confidence 456888887767666665554443322 345422 2234445669999888854444444444
Q ss_pred hHH
Q 031055 109 GIL 111 (166)
Q Consensus 109 Gl~ 111 (166)
|+.
T Consensus 207 gL~ 209 (442)
T COG3182 207 GLA 209 (442)
T ss_pred hhh
Confidence 443
No 86
>PF13630 SdpI: SdpI/YhfL protein family
Probab=30.47 E-value=60 Score=21.30 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.5
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 83 GRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 83 ~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
..+....-|++.|......|++....|+.
T Consensus 19 s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~ 47 (76)
T PF13630_consen 19 SDENWKKAHRFAGKIFIIGGIVLLIIGII 47 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999999998876
No 87
>PRK13554 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=30.45 E-value=2.8e+02 Score=23.26 Aligned_cols=105 Identities=10% Similarity=0.016 Sum_probs=62.2
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCC-----Ccc--------chhhHHHHHHHHHHHHHHHHHHHhHHH-
Q 031055 47 NFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKN-----GRA--------SLLPWHVFLGVYIYALAVATAATGILE- 112 (166)
Q Consensus 47 h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~-----~r~--------~~~p~H~~~G~~~~~L~i~t~~lGl~e- 112 (166)
-+.-+||..|++ +++|.+.=+.|-.+-+.....-+ .+. ..-++-......+++.-+.=+..|+.-
T Consensus 23 ~~d~lmslTGl~-L~lFL~~Hm~~N~sil~G~eafN~~a~fl~~~~~~~~~~~~P~l~~~~~~~l~~~~i~H~~~a~~l~ 101 (241)
T PRK13554 23 KADKLQSATGIM-LGCFLLLHMHFESSILLGKEAFYHVVQFLEGGMFSSTGHGFPIVTKVFSVFMLLVVIVHAAVALRRF 101 (241)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445589999998 88888777777665553211101 111 122455566677777777777787542
Q ss_pred ------HHHhhhccccccCCCchHHHHH--HHHHHHHHHHHHHHHHhcc
Q 031055 113 ------KVTFLQTNHVISRYSTEALLVN--SLGILIVVLGGFVILALIT 153 (166)
Q Consensus 113 ------k~~f~~~~~~~~~~~~e~~l~n--~~Gl~~~~~~~~v~~~~~~ 153 (166)
+..+.. .+|..+.+.+.--+| .+|+++++|+..-++-...
T Consensus 102 p~n~~~~~~ar~-~~y~~~~~~~~~w~~q~~TG~iil~Fi~~HL~~~~~ 149 (241)
T PRK13554 102 PAQLGQWRALRS-HMGSIKHKDTHAWFWQLITGFILFFLVPVHLFTMIL 149 (241)
T ss_pred chhHHHHHHHhh-hhhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112221 122222334444456 9999999999998887664
No 88
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=30.37 E-value=3.9e+02 Score=23.93 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHHHHHHHHHH
Q 031055 52 HSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAV 103 (166)
Q Consensus 52 HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~L~i 103 (166)
........+.+..+|...|+.+.+..- ...+-..|...+.+++...+
T Consensus 349 ~~~~~~~ll~lv~lQi~LGi~tv~~~l-----P~~la~~H~~gA~lLl~~~~ 395 (403)
T PTZ00127 349 VRRLLMALLGALTLQVLLGITTLLSQV-----PVHLAVAHQFGALVLLTTLL 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHHHHHHH
Confidence 444556677789999999999876522 23566789987776665544
No 89
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=29.38 E-value=1.7e+02 Score=26.73 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=10.7
Q ss_pred HHHHHHHhccCCCCCC
Q 031055 144 GGFVILALITPENGKS 159 (166)
Q Consensus 144 ~~~v~~~~~~~~~~~~ 159 (166)
...+.|...+++++++
T Consensus 452 ~~~~~y~~~~~~~~~~ 467 (507)
T TIGR00910 452 LPFIIYALHDKKGHAN 467 (507)
T ss_pred HHHHHHHHhcccccCc
Confidence 3356788888887554
No 90
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=28.44 E-value=57 Score=24.00 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhe
Q 031055 54 WLGLACVFLFGIQWAAGFTTF 74 (166)
Q Consensus 54 wlGl~t~~L~~lQ~~~G~~~f 74 (166)
|+.++.++.+++|.++|+.+.
T Consensus 3 ~lii~~~~~~~lQ~~l~~~Qi 23 (109)
T PF06923_consen 3 ILIILLVIAWLLQILLGWFQI 23 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999875
No 91
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=27.97 E-value=3.2e+02 Score=21.90 Aligned_cols=136 Identities=14% Similarity=0.063 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccC-CCCccchhhHHHHHHHHHHHHHhhhhhhheeecCC--------
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALKFHN----DKG-IDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGG-------- 79 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~~~~----~~~-~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~-------- 79 (166)
.....||..-..-+++++.|+...+..-. ..| .+..-..|-+.|.+.++.+.+.... ......|..
T Consensus 13 ~~Ri~HW~~a~s~~~L~~TGl~i~~p~~~~~~~~~g~~~~~r~iH~~~g~i~~~~~~~~~~~-~~~~~~~~~~d~~w~~~ 91 (211)
T PRK10639 13 PERINHWIVAFCFILAAVSGLGFFFPSFNWLMNILGTPQLARILHPFVGVVMFASFIIMFFR-YWHHNLINRDDIFWAKN 91 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCChhhHHHHHH
Confidence 34568999999999999999987553221 001 1122237999999888866655322 211112221
Q ss_pred --------CCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCc----hHHHH-HHHHHHHHHHHHH
Q 031055 80 --------SKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYST----EALLV-NSLGILIVVLGGF 146 (166)
Q Consensus 80 --------~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~----e~~l~-n~~Gl~~~~~~~~ 146 (166)
.......+-|..+..-..++++.++-+++|+. +.+..-. ..++. -+..+ +..+.+++++.++
T Consensus 92 ~~~~~~~~~~p~~~kyN~~qk~~y~~~~~~~~~~~iTGl~--l~~p~~~---~~~~~~~~~~~~~~H~~~a~~~i~~iiv 166 (211)
T PRK10639 92 IRKIVVNEEVGDTGRYNFGQKCVFWAAIIFLVLLLVSGVI--IWRPYFA---PAFSIPVIRFALMLHSFAAVALIVVIMV 166 (211)
T ss_pred hhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc---ccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112345667788878888888888899986 1111000 12221 11222 2677777778888
Q ss_pred HHHHhccC
Q 031055 147 VILALITP 154 (166)
Q Consensus 147 v~~~~~~~ 154 (166)
-+|++...
T Consensus 167 Hiy~a~~~ 174 (211)
T PRK10639 167 HIYAALWV 174 (211)
T ss_pred HHHHHhcC
Confidence 88887653
No 92
>CHL00070 petB cytochrome b6
Probab=26.95 E-value=3.6e+02 Score=22.20 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=45.3
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhheee--cCCCC------------CCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 49 YSLHSWLGLACVFLFGIQWAAGFTTFWY--PGGSK------------NGRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 49 ~S~HswlGl~t~~L~~lQ~~~G~~~fl~--p~~~~------------~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
.|+==++|-++..++.+|.+.|++--++ |..+. +..-.++-.|++..-+.+++..+=..-|+.
T Consensus 30 ~~~~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~ 106 (215)
T CHL00070 30 VNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106 (215)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578998999999999999865543 43211 122345668999999999988888888875
No 93
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=26.71 E-value=88 Score=20.32 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhccCCC
Q 031055 140 IVVLGGFVILALITPEN 156 (166)
Q Consensus 140 ~~~~~~~v~~~~~~~~~ 156 (166)
+++|+++..|++.+|..
T Consensus 4 ll~f~~iaaw~~~~~~~ 20 (54)
T PF12553_consen 4 LLVFAAIAAWMARNPDI 20 (54)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 38899999999999954
No 94
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=26.47 E-value=5e+02 Score=26.62 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC
Q 031055 132 LVNSLGILIVVLGGFVILALITPEN 156 (166)
Q Consensus 132 l~n~~Gl~~~~~~~~v~~~~~~~~~ 156 (166)
+..++|++..+-.+++++...+|..
T Consensus 204 ~~~~~~~~~~~~l~~a~~~l~r~~~ 228 (1094)
T PRK02983 204 VNALLGLFGAAALIAALIVLFRSQR 228 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3335555554444444555555533
No 95
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=26.21 E-value=2.8e+02 Score=23.43 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--hhhccccccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031055 91 HVFLGVYIYALAVATAATGILEKVT--FLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALITPEN 156 (166)
Q Consensus 91 H~~~G~~~~~L~i~t~~lGl~ek~~--f~~~~~~~~~~~~e~~l~n~~Gl~~~~~~~~v~~~~~~~~~ 156 (166)
+.=.|+...+=+..++++|...-.. |-. +.-++....-|.+|+.+++.+... |...||+-
T Consensus 78 ~iGLglg~liW~s~n~l~Gw~~grfGlFg~-----~~~~~~~~~Ln~~G~~l~~~~~~~-f~fik~~~ 139 (254)
T PF07857_consen 78 TIGLGLGMLIWGSVNCLTGWASGRFGLFGL-----DPQVPSSPWLNYIGVALVLVSGII-FSFIKSEE 139 (254)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhceeccc-----cccccchhHHHHHHHHHHHHHHHh-eeeecCCC
Confidence 4445555666788899999875431 221 222455678899999999998775 45555544
No 96
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.88 E-value=2.3e+02 Score=19.69 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=29.9
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 031055 83 GRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEALLVNSLGILIVVLGGFVILALIT 153 (166)
Q Consensus 83 ~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~l~n~~Gl~~~~~~~~v~~~~~~ 153 (166)
++.+++-..-|.+++..++.++-...|+. .- +..-+...-+..+++-.++.+++++.+..
T Consensus 4 wKvR~kN~~~w~ali~~i~l~vq~~~~~f-----g~------~~~~~~~~~~i~~~v~~vl~iL~~~Gii~ 63 (84)
T PF04531_consen 4 WKVRFKNKAFWVALISAILLLVQQVGGLF-----GW------GADFDVLLDQISNIVNAVLTILVILGIIN 63 (84)
T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHh-----cc------cccHHHHHHHHHHHHHHHHHHHHHheeee
Confidence 44455555666666666666666666532 11 00112223334455555555555555543
No 97
>CHL00045 ccsA cytochrome c biogenesis protein
Probab=24.04 E-value=4.8e+02 Score=22.60 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=16.6
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHh
Q 031055 83 GRASLLPWHVFLGVYIYALAVATAATG 109 (166)
Q Consensus 83 ~r~~~~p~H~~~G~~~~~L~i~t~~lG 109 (166)
.++.....|...-.+.+.+-.++.+.|
T Consensus 132 L~s~wL~iHV~~~~lsYa~f~la~~~a 158 (319)
T CHL00045 132 LQSNWLMMHVSMMILSYAALLCGSLLS 158 (319)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667899876655555444444444
No 98
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=23.71 E-value=4.1e+02 Score=21.79 Aligned_cols=47 Identities=26% Similarity=0.054 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhh
Q 031055 25 AFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTT 73 (166)
Q Consensus 25 al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~ 73 (166)
+-+.+++|+......+-..+.....| +.--.....+...|.+.|+..
T Consensus 96 aGi~~liGl~~Ll~RRl~~~~vr~~s--~~~D~~~L~lLl~i~~tGl~~ 142 (224)
T TIGR00351 96 SGVLCLIGGVLLLKRRLFSPRVRATS--TGADILILSLLLIQCLLGLLT 142 (224)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccC--CHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666555443323223322 224455667777788888765
No 99
>COG4244 Predicted membrane protein [Function unknown]
Probab=23.64 E-value=3.2e+02 Score=21.73 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhh
Q 031055 14 RKLVHLSLQFIAFLLSLIGVWA----ALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLP 89 (166)
Q Consensus 14 ~k~iH~~l~~~al~~~~iGl~a----v~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p 89 (166)
+...=+.....|.+.+.+...+ ....+......+-.-||+-+|.++.+.+ .+.|+.-+++ +.+......|
T Consensus 47 ~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a~~~a~wh~~lG~il~~~l---a~~~~~r~~~---~~~~~~~v~~ 120 (160)
T COG4244 47 WFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAAKQAAEWHHVLGNILLIVL---AILTAWRYVH---RNDAVAAVSP 120 (160)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HcCChhhccH
Confidence 4455566666666666666555 3333331122344558999999887766 3455554333 3445567778
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 031055 90 WHVFLGVYIYALAVATAATGILEK 113 (166)
Q Consensus 90 ~H~~~G~~~~~L~i~t~~lGl~ek 113 (166)
+=-.+|.++..+-..+..+|=+.-
T Consensus 121 ~~L~lsl~~~~Lv~l~g~lG~~l~ 144 (160)
T COG4244 121 AGLLLSLATVLLVALQGYLGAQLV 144 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 889999999999999999997743
No 100
>PLN03100 Permease subunit of ER-derived-lipid transporter; Provisional
Probab=22.56 E-value=3.9e+02 Score=23.13 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=53.0
Q ss_pred hhh-HHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCch
Q 031055 51 LHS-WLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTE 129 (166)
Q Consensus 51 ~Hs-wlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e 129 (166)
-+. |-+. .+.+|..|.+... ++.+.++|..+..........+.+..+.+..+|+--- +...... ++++.|
T Consensus 47 ~~~~~~~~-~~~~f~~~~~~~~-----~~~~~~~~~~~~Qi~~~G~~slpiv~l~s~f~G~vla--~Q~~~~L-~~fGa~ 117 (292)
T PLN03100 47 PKYLWRGL-STLLLAGQVILRI-----LKGKIHWRNTLQQLERVGPKSLGVSLLTSSFVGMVFT--IQFVREF-TKLGLT 117 (292)
T ss_pred hHHHHHHH-HHHHHHHHHHHHh-----ccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHcCHH
Confidence 344 5555 4446777775543 2335556666777788888888888888888887521 1111112 577889
Q ss_pred HHHHHHHHHHHH
Q 031055 130 ALLVNSLGILIV 141 (166)
Q Consensus 130 ~~l~n~~Gl~~~ 141 (166)
..+++..++.++
T Consensus 118 ~~vG~~v~~~~v 129 (292)
T PLN03100 118 RSIGGVLALAFS 129 (292)
T ss_pred HHHHHHHHHHHH
Confidence 999998887765
No 101
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=22.43 E-value=5.5e+02 Score=24.45 Aligned_cols=57 Identities=18% Similarity=0.368 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhheeecCCCCC-------CccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 53 SWLGLACVFLFGIQWAAGFTTFWYPGGSKN-------GRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 53 swlGl~t~~L~~lQ~~~G~~~fl~p~~~~~-------~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
-|...+..++..+ .+.+...|++|...++ +|..++. =-|.|.++++-+++-.++|++
T Consensus 196 Rw~~~~~~i~~~i-~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~-lD~IG~~L~~~Gl~LfLlgl~ 259 (599)
T PF06609_consen 196 RWIFYIFIIWSGI-ALVLIFFFYFPPPRAQLHGRKLSKREQLKE-LDWIGIFLFIAGLALFLLGLS 259 (599)
T ss_pred chHHHHHHHHHHH-HHHHHHHHhCCCchhhhccccCcHHHHHHH-hhHHHHHHHHHHHHHHHHHHh
Confidence 4555544444333 3445556667653211 1222333 346999999999999999998
No 102
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=22.41 E-value=2.7e+02 Score=22.84 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHH--HHHHHhhhhhhheeecCCCCCCccchhhHHHHHHHHH
Q 031055 21 LQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVF--LFGIQWAAGFTTFWYPGGSKNGRASLLPWHVFLGVYI 98 (166)
Q Consensus 21 l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~--L~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~ 98 (166)
...+.++...+.+...++.-.+ .++++ -+.|.|-+... ...+|..+++ +...... .+.+..+=...+..+
T Consensus 170 ~~~~~~~~~~~~~~~ly~~lP~-~k~~~--~~~l~Ga~~aa~~~~~~~~~fs~---Y~~~~~~--~~~y~~~gsvi~lll 241 (263)
T TIGR00766 170 FRGISVLVSVLVSWVLFTWMPR-EPVRL--VTLARGTLMAAIGFELFKQVMTI---YLPILLR--SPSGAAFGSVLGLMV 241 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCccH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHhcC--CchhHhHHHHHHHHH
Confidence 3445666666666666653221 12222 26777765444 4445555444 2222111 334555666667766
Q ss_pred HH-HHHHHHHHhH
Q 031055 99 YA-LAVATAATGI 110 (166)
Q Consensus 99 ~~-L~i~t~~lGl 110 (166)
+. +.....+.|-
T Consensus 242 Wly~~~~ill~ga 254 (263)
T TIGR00766 242 FFYFFAWLILFAT 254 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 65 4444444454
No 103
>COG1290 QcrB Cytochrome b subunit of the bc complex [Energy production and conversion]
Probab=22.31 E-value=5.7e+02 Score=22.93 Aligned_cols=61 Identities=25% Similarity=0.247 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhheee--cCCCCC------------CccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 51 LHSWLGLACVFLFGIQWAAGFTTFWY--PGGSKN------------GRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 51 ~HswlGl~t~~L~~lQ~~~G~~~fl~--p~~~~~------------~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
.==|+|.++...++.|.+.|+...++ |.++.. ..-.+...|.+.+.+.+++...-..-++.
T Consensus 37 ~~y~~G~l~~~~~v~~v~tGi~L~~~Y~p~~~~a~~S~~~i~~~V~~Gw~lr~~H~~~A~~m~~~~~iHm~r~~~ 111 (381)
T COG1290 37 FAYPLGGLLLFLFVIQVITGIFLALYYVPSAGLAFPSVPFIMREVPYGWLLRYMHLWGASLMFALVYLHMFRGFF 111 (381)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHheeEecCCCccccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 33478999999999999999987765 332111 11235668999998888887777776653
No 104
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.68 E-value=1e+02 Score=20.41 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcc-ccc-cCCCchHHHHHHHHHHHHHHHHH
Q 031055 93 FLGVYIYALAVATAATGILEKVTFLQTN-HVI-SRYSTEALLVNSLGILIVVLGGF 146 (166)
Q Consensus 93 ~~G~~~~~L~i~t~~lGl~ek~~f~~~~-~~~-~~~~~e~~l~n~~Gl~~~~~~~~ 146 (166)
.+|.++.+.+++=...|.+.......+- ... .+.+++.+.--+.|.+.++-|+.
T Consensus 2 iigi~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~ 57 (59)
T PF11381_consen 2 IIGIALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLF 57 (59)
T ss_pred eeeehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHh
Confidence 4678889999999999998765543321 111 34455666655777776666554
No 105
>TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I. Gene symbols ccoN and fixN are synonymous.
Probab=21.21 E-value=6.5e+02 Score=23.14 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCc-cc--hhhHHH--------HHHH-HHHHHHhhhhhhheeecCCC-CCCc-cchh
Q 031055 23 FIAFLLSLIGVWAALKFHNDKGIDNF-YS--LHSWLG--------LACV-FLFGIQWAAGFTTFWYPGGS-KNGR-ASLL 88 (166)
Q Consensus 23 ~~al~~~~iGl~av~~~~~~~~~~h~-~S--~HswlG--------l~t~-~L~~lQ~~~G~~~fl~p~~~-~~~r-~~~~ 88 (166)
..+++-.++|+.+..+... |++ -+ ..+|+- .-++ --+.....+|...+..|+.. ++.. .++.
T Consensus 17 ~~~~~~~~~G~~~a~~~~~----P~~~l~~~~~~~~~fgr~R~~Htn~~i~~~~~~~~~g~~yy~~~r~~~~~l~~~~la 92 (474)
T TIGR00780 17 GWGIVGMLVGVVLAFQLSF----PALNLSDIAGEYGIFGRLRPLHTNAVIFAFGGGGLIATSYYVVQRTYHQRLFGGIVG 92 (474)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 3344556677777777654 444 11 012221 1122 24567788888888888732 2222 3344
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHH
Q 031055 89 PWHVFLGVYIYALAVATAATGILE 112 (166)
Q Consensus 89 p~H~~~G~~~~~L~i~t~~lGl~e 112 (166)
..+-+.=.+..++++++..+|.+|
T Consensus 93 ~~~~~~~~~~~~~a~~~~~~G~~~ 116 (474)
T TIGR00780 93 LFHFWGWQILIVLAVISLFAGLTQ 116 (474)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcc
Confidence 556665556666777777777653
No 106
>PRK10588 hypothetical protein; Provisional
Probab=20.83 E-value=3.4e+02 Score=19.75 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhh--HHHHHHHH
Q 031055 20 SLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLP--WHVFLGVY 97 (166)
Q Consensus 20 ~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p--~H~~~G~~ 97 (166)
.++.++++++..=...++-+-+. =..+..+...|.|+..+--.+.-++.|+. -+-|+.+++ .|-+.|..
T Consensus 16 plRaLSliLAl~la~~v~w~P~~-fa~~~~~~~~~~~~lliwavc~g~IhGVG--------F~Pr~~~Wq~lFsP~~a~~ 86 (97)
T PRK10588 16 PLRALSLVMALLLAGCMFWDPSR-FAAKTSSLEIWHGLLLMWAVCAGVIHGVG--------FRPQKVLWQGIFCPLPADI 86 (97)
T ss_pred hHHHHHHHHHHHHHHHHHcCHHH-HHHHcCCccHHHHHHHHHHHHHHHhhhcc--------cchhHHHHHHHHhhHHHHH
Confidence 34556666665544444433221 12367788899999777777766666662 223344444 45566666
Q ss_pred HHHHH
Q 031055 98 IYALA 102 (166)
Q Consensus 98 ~~~L~ 102 (166)
+.+.+
T Consensus 87 iL~~g 91 (97)
T PRK10588 87 VLIVG 91 (97)
T ss_pred HHHHH
Confidence 65533
No 107
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=20.65 E-value=1.5e+02 Score=27.08 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=11.1
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 031055 86 SLLPWHVFLGVYIYALAVA 104 (166)
Q Consensus 86 ~~~p~H~~~G~~~~~L~i~ 104 (166)
....+|+|.|++.++|+++
T Consensus 74 ~~Y~~HK~~sIlailL~l~ 92 (438)
T COG4097 74 KIYRFHKYTSILAILLLLA 92 (438)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 4455666666666655554
No 108
>PRK03735 cytochrome b6; Provisional
Probab=20.64 E-value=3.5e+02 Score=22.41 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhheee--cCCCC------------CCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 51 LHSWLGLACVFLFGIQWAAGFTTFWY--PGGSK------------NGRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 51 ~HswlGl~t~~L~~lQ~~~G~~~fl~--p~~~~------------~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
+==++|-++..++.+|.+.|++--++ |.... +....++-.|++..-+.+++...=..-|+.
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~ 114 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFF 114 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44578999999999999999876543 43211 122345568999999999998888888875
No 109
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.57 E-value=2.3e+02 Score=17.70 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 031055 135 SLGILIVVLGGFV 147 (166)
Q Consensus 135 ~~Gl~~~~~~~~v 147 (166)
..|++.++.|...
T Consensus 58 ~~gi~~i~~Gi~~ 70 (72)
T PF03729_consen 58 LSGILSIVLGIIL 70 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 110
>COG2322 Predicted membrane protein [Function unknown]
Probab=20.16 E-value=4.7e+02 Score=21.11 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCccchhh---HHH
Q 031055 16 LVHLSLQFIAFLLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGRASLLP---WHV 92 (166)
Q Consensus 16 ~iH~~l~~~al~~~~iGl~av~~~~~~~~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r~~~~p---~H~ 92 (166)
.+-+....+++.+.++|...+-+- |.++..++.=.=+.+-++-+.+++---.+|.-. .+++ +-..|..+.+ .|.
T Consensus 47 ~lnai~~~~s~~~llag~~~Ikrg-~i~~Hk~aMltA~~l~l~FlvlYltr~~l~~~t-~f~~-~G~~k~~Y~~iL~~Hi 123 (177)
T COG2322 47 MLNAIFNSLSFIFLLAGWRLIKRG-NIEKHKRAMLTAFTLALVFLVLYLTRHGLGGET-AFGG-TGIYKGIYFFILITHI 123 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCC-CeeeehHHHHHHHHHH
Confidence 456778888999999999887764 322211222112222222222332222222211 1222 2234554444 699
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 031055 93 FLGVYIYALAVATAATGILEK 113 (166)
Q Consensus 93 ~~G~~~~~L~i~t~~lGl~ek 113 (166)
.+-....-|++.+..+|...+
T Consensus 124 ~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 124 ILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHhhhHHHHHHHHHhcch
Confidence 999999999999999998754
Done!