Query 031055
Match_columns 166
No_of_seqs 153 out of 408
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 13:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kqf_C FDH-N gamma, formate de 88.2 2.6 8.9E-05 32.5 8.5 97 13-111 13-133 (217)
2 4gd3_A NI/Fe-hydrogenase 1 B-t 82.8 2.4 8.3E-05 33.3 5.9 60 13-72 17-83 (235)
3 1kqf_C FDH-N gamma, formate de 66.4 40 0.0014 25.6 9.2 45 60-105 22-71 (217)
4 1rkl_A Dolichyl-diphosphooligo 53.9 24 0.00083 20.4 4.1 20 130-151 8-27 (36)
5 2lat_A Dolichyl-diphosphooligo 51.3 24 0.00082 20.5 3.9 25 130-154 8-32 (37)
6 4gd3_A NI/Fe-hydrogenase 1 B-t 35.7 64 0.0022 24.9 5.4 53 59-111 25-83 (235)
7 2hac_A T-cell surface glycopro 22.7 56 0.0019 18.5 2.1 28 132-159 4-31 (33)
8 2lom_A HIG1 domain family memb 22.8 27 0.00091 24.2 0.0 27 9-35 53-81 (93)
9 2ks1_B Epidermal growth factor 16.7 1.6E+02 0.0054 17.4 3.3 20 138-157 21-40 (44)
10 2jwa_A Receptor tyrosine-prote 15.9 1.8E+02 0.0063 17.2 3.5 28 129-156 12-39 (44)
No 1
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=88.17 E-value=2.6 Score=32.52 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccC-CCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCC-----
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALKFHN----DKG-IDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKN----- 82 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~~~~----~~~-~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~----- 82 (166)
.....||..=.+-+.+.+.|+...+.... ..+ ......+|-++|++.+.+++.-. +.......|. +.+
T Consensus 13 ~~R~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~-~r~~r~~~p~-~~~~~~~~ 90 (217)
T 1kqf_C 13 IDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMF-VRFVHHNIPD-KKDIPWLL 90 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHH-HHHGGGSCCC-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-hhHHHHHH
Confidence 45679998888878888888876422110 001 12356799999999888776633 2222323443 211
Q ss_pred --------------CccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 83 --------------GRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 83 --------------~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
.....-|..+..=.+++++.++.+++|+.
T Consensus 91 ~~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~ 133 (217)
T 1kqf_C 91 NIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI 133 (217)
T ss_dssp SHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234466666667778888889999975
No 2
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=82.84 E-value=2.4 Score=33.34 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC--C-----ccchhhHHHHHHHHHHHHHhhhhhh
Q 031055 13 LRKLVHLSLQFIAFLLSLIGVWAALKFHNDKGID--N-----FYSLHSWLGLACVFLFGIQWAAGFT 72 (166)
Q Consensus 13 ~~k~iH~~l~~~al~~~~iGl~av~~~~~~~~~~--h-----~~S~HswlGl~t~~L~~lQ~~~G~~ 72 (166)
.....||..=.+-+.+.+.|+..........+.+ + ...+|-++|++.+++..+-.+.++.
T Consensus 17 ~~R~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 17 PVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999877777777777877654321101211 1 2358999999999999998888876
No 3
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=66.43 E-value=40 Score=25.57 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhhheeecCCC-----CCCccchhhHHHHHHHHHHHHHHHH
Q 031055 60 VFLFGIQWAAGFTTFWYPGGS-----KNGRASLLPWHVFLGVYIYALAVAT 105 (166)
Q Consensus 60 ~~L~~lQ~~~G~~~fl~p~~~-----~~~r~~~~p~H~~~G~~~~~L~i~t 105 (166)
.+++..+++.|+... .|... ...+.....+|.++|.+.+++.+.=
T Consensus 22 a~~ii~l~~tG~~i~-~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r 71 (217)
T 1kqf_C 22 VICFFLVALSGISFF-FPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM 71 (217)
T ss_dssp HHHHHHHHHHHHHHH-CTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-chhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 334555567777554 44321 1223456779999999998777653
No 4
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=53.90 E-value=24 Score=20.38 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 031055 130 ALLVNSLGILIVVLGGFVILAL 151 (166)
Q Consensus 130 ~~l~n~~Gl~~~~~~~~v~~~~ 151 (166)
..++|++|+...+ ++|+|-.
T Consensus 8 ~~lan~lG~~~~~--LIvlYH~ 27 (36)
T 1rkl_A 8 NSLAITFGIVMMT--LIVIYHA 27 (36)
T ss_dssp GHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHH
Confidence 5699999998554 4444443
No 5
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=51.31 E-value=24 Score=20.50 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 031055 130 ALLVNSLGILIVVLGGFVILALITP 154 (166)
Q Consensus 130 ~~l~n~~Gl~~~~~~~~v~~~~~~~ 154 (166)
..++|++|+...+..++-=|..+++
T Consensus 8 ~~lan~lG~~~~~LIVlYH~v~~n~ 32 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVLYHYVAVNN 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4689999998655544443444444
No 6
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=35.73 E-value=64 Score=24.91 Aligned_cols=53 Identities=8% Similarity=-0.005 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhhhhheeecC--CCCCCcc----chhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 59 CVFLFGIQWAAGFTTFWYPG--GSKNGRA----SLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 59 t~~L~~lQ~~~G~~~fl~p~--~~~~~r~----~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
+.+++..+++.|+....-+. .++..+. ....+|.++|++++++.+.=...++.
T Consensus 25 ~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 25 TVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667765432211 0111221 23458999999999999998888875
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=22.66 E-value=56 Score=18.46 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 031055 132 LVNSLGILIVVLGGFVILALITPENGKS 159 (166)
Q Consensus 132 l~n~~Gl~~~~~~~~v~~~~~~~~~~~~ 159 (166)
+-+++--++++||+++.-.-.+.|..++
T Consensus 4 lCYiLDgiL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 4 LCYLLDGILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4456777888999998888777777554
No 8
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=22.78 E-value=27 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=21.5
Q ss_pred CCcchhHHHHH--HHHHHHHHHHHHHHHH
Q 031055 9 GTKKLRKLVHL--SLQFIAFLLSLIGVWA 35 (166)
Q Consensus 9 ~~k~~~k~iH~--~l~~~al~~~~iGl~a 35 (166)
++++..|.+|+ ..|.+++++.+.|...
T Consensus 53 ~~~~sqklmr~RV~aQg~tV~al~~g~~y 81 (93)
T 2lom_A 53 NTKMSIHLIHMRVAAQGFVVGAMTVGMGY 81 (93)
Confidence 35667787877 8899999988888776
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=16.71 E-value=1.6e+02 Score=17.44 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 031055 138 ILIVVLGGFVILALITPENG 157 (166)
Q Consensus 138 l~~~~~~~~v~~~~~~~~~~ 157 (166)
+++++..++.++...+.+.+
T Consensus 21 v~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhhhhHh
Confidence 33333333333444444443
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=15.88 E-value=1.8e+02 Score=17.24 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031055 129 EALLVNSLGILIVVLGGFVILALITPEN 156 (166)
Q Consensus 129 e~~l~n~~Gl~~~~~~~~v~~~~~~~~~ 156 (166)
..+.+-+.|+++++...+++....+.|.
T Consensus 12 ~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 3345557776655555555444444443
Done!