Query 031055
Match_columns 166
No_of_seqs 153 out of 408
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 13:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031055.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031055hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfc_ f.21.1.1 (C:) Formate 86.6 4.3 0.00031 29.3 12.7 139 11-154 10-175 (216)
2 d1q90b_ f.21.1.2 (B:) Cytochro 34.7 77 0.0056 23.0 10.1 61 50-110 28-102 (212)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 28.9 18 0.0013 18.0 2.1 24 136-161 3-26 (27)
4 d1xmea1 f.24.1.1 (A:14-562) Ba 28.4 86 0.0063 25.8 7.7 32 47-78 51-82 (549)
5 d1q90b_ f.21.1.2 (B:) Cytochro 25.4 1.1E+02 0.0079 22.1 7.0 84 20-111 36-134 (212)
6 d1v54a_ f.24.1.1 (A:) Mitochon 23.7 1.1E+02 0.0078 25.2 7.4 33 69-101 390-423 (514)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 23.5 1.4E+02 0.0099 22.2 9.8 57 55-111 32-102 (261)
8 d1kqfc_ f.21.1.1 (C:) Formate 18.3 97 0.007 21.4 5.3 67 45-111 105-174 (216)
9 d3cx5c2 f.21.1.2 (C:1-261) Mit 17.2 1.9E+02 0.014 21.3 7.1 85 19-111 33-133 (261)
10 d1jb0b_ f.29.1.1 (B:) Apoprote 12.5 3.8E+02 0.028 22.8 8.3 62 49-110 331-397 (739)
No 1
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=86.58 E-value=4.3 Score=29.26 Aligned_cols=139 Identities=11% Similarity=0.060 Sum_probs=82.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----CCCCccchhhHHHHHHHHHHHHHhhhhhhheeecCCC-----
Q 031055 11 KKLRKLVHLSLQFIAFLLSLIGVWAALKFHNDK-----GIDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGS----- 80 (166)
Q Consensus 11 k~~~k~iH~~l~~~al~~~~iGl~av~~~~~~~-----~~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~----- 80 (166)
+......||..=.+-+++.+.|+...+..-... .......+|-++|++.+.....-....+-....+...
T Consensus 10 ~~~~Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (216)
T d1kqfc_ 10 KFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLL 89 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 335577999999999999999998865332211 1123346799999877665555444333322221100
Q ss_pred ------------CCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccCCCchHH-----HHHHHHHHHHHH
Q 031055 81 ------------KNGRASLLPWHVFLGVYIYALAVATAATGILEKVTFLQTNHVISRYSTEAL-----LVNSLGILIVVL 143 (166)
Q Consensus 81 ------------~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ek~~f~~~~~~~~~~~~e~~-----l~n~~Gl~~~~~ 143 (166)
......+.|..+......+++++.-+.+|+.- +.. ......+.+.. +=...+.++++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~n~~qkl~~~~~~~~~~~~~~TGl~l---~~~--~~~~~~~~~~~~~~~~iH~~~~~l~~~~ 164 (216)
T d1kqfc_ 90 NIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVII---WRP--YFAQYFPMQVVRYSLLIHAAAGIILIHA 164 (216)
T ss_dssp SHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHT---CTT--TTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCccHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---Hcc--chHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 11123456788889999999999999999861 111 00012222221 222677777888
Q ss_pred HHHHHHHhccC
Q 031055 144 GGFVILALITP 154 (166)
Q Consensus 144 ~~~v~~~~~~~ 154 (166)
.++-+|.+...
T Consensus 165 vi~Hvy~a~~~ 175 (216)
T d1kqfc_ 165 ILIHMYMAFWV 175 (216)
T ss_dssp HHHHHHHHHHB
T ss_pred HHHHHHHHHcc
Confidence 88888877643
No 2
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=34.73 E-value=77 Score=22.99 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=41.9
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhheee--cCCCCC------------CccchhhHHHHHHHHHHHHHHHHHHHhH
Q 031055 50 SLHSWLGLACVFLFGIQWAAGFTTFWY--PGGSKN------------GRASLLPWHVFLGVYIYALAVATAATGI 110 (166)
Q Consensus 50 S~HswlGl~t~~L~~lQ~~~G~~~fl~--p~~~~~------------~r~~~~p~H~~~G~~~~~L~i~t~~lGl 110 (166)
|+-=++|-++...+.+|.+.|++-.++ |..+.. ....++-.|++..-..+++...=..-++
T Consensus 28 ~~~~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~ 102 (212)
T d1q90b_ 28 NIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVY 102 (212)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHH
Confidence 444558999999999999999976554 332211 1124455899988888887777666554
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.87 E-value=18 Score=17.95 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCcc
Q 031055 136 LGILIVVLGGFVILALITPENGKSEV 161 (166)
Q Consensus 136 ~Gl~~~~~~~~v~~~~~~~~~~~~~~ 161 (166)
+|++.+-.+.+ +......|+||.+
T Consensus 3 lgli~~tl~gl--f~aayqqykrpne 26 (27)
T d2e74g1 3 LGLVFATLGGL--FYAAYQQYKRPNE 26 (27)
T ss_dssp HHHHHHHHHHH--HHHHHHHTTSCCC
T ss_pred eeehHHHHHHH--HHHHHHHhcCCCC
Confidence 45554444433 2233345666654
No 4
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=28.43 E-value=86 Score=25.84 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=22.5
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhheeecC
Q 031055 47 NFYSLHSWLGLACVFLFGIQWAAGFTTFWYPG 78 (166)
Q Consensus 47 h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~ 78 (166)
+++..-+-=|.+.+..+..+...|+..++.|+
T Consensus 51 ~Y~~~~T~Hg~~mif~f~~~~~~g~~~y~vp~ 82 (549)
T d1xmea1 51 SYYQGLTLHGVLNAIVFTQLFAQAIMVYLPAR 82 (549)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444334466666678888999999888887
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=25.35 E-value=1.1e+02 Score=22.11 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCC---------------CCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCCCc
Q 031055 20 SLQFIAFLLSLIGVWAALKFHNDKGI---------------DNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKNGR 84 (166)
Q Consensus 20 ~l~~~al~~~~iGl~av~~~~~~~~~---------------~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~~r 84 (166)
.+-.+=.+..+.|+...+....+.+. --+-+.|.|-.=..+.+..++..-++.. +.=+..
T Consensus 36 ll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~----gsyk~p- 110 (212)
T d1q90b_ 36 ITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLT----GGFKRP- 110 (212)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TTTSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHc----CcccCc-
Confidence 33334445566888887666543221 1244679988888888888888887753 211111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 85 ASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 85 ~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
+..-...|..++.+.++++.+|..
T Consensus 111 ---re~~W~~Gv~l~~l~m~~aftGY~ 134 (212)
T d1q90b_ 111 ---RELTWVTGVIMAVCTVSFGVTGYS 134 (212)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccceehHhHHHHHHHHHHHHhhhh
Confidence 236788999999999999999975
No 6
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.69 E-value=1.1e+02 Score=25.18 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=21.5
Q ss_pred hhhhheeecC-CCCCCccchhhHHHHHHHHHHHH
Q 031055 69 AGFTTFWYPG-GSKNGRASLLPWHVFLGVYIYAL 101 (166)
Q Consensus 69 ~G~~~fl~p~-~~~~~r~~~~p~H~~~G~~~~~L 101 (166)
+|...|++|+ .++...+++.++|-++-...+.+
T Consensus 390 ~a~~y~w~Pk~~Gr~~~e~l~~~~f~~~fiG~~~ 423 (514)
T d1v54a_ 390 MGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNM 423 (514)
T ss_dssp HHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHH
Confidence 3445678888 35566778888888765544433
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.51 E-value=1.4e+02 Score=22.21 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhhhhhheee--cCCCC------------CCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 55 LGLACVFLFGIQWAAGFTTFWY--PGGSK------------NGRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 55 lGl~t~~L~~lQ~~~G~~~fl~--p~~~~------------~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
+|-++...+.+|.+.|++--++ |.... +..-.++-.|++..-..+++...=..-|+.
T Consensus 32 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~ 102 (261)
T d3cx5c2 32 MGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLY 102 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHH
Confidence 6988999999999999876554 43211 122345668999999999988888877775
No 8
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=18.26 E-value=97 Score=21.37 Aligned_cols=67 Identities=6% Similarity=-0.047 Sum_probs=47.4
Q ss_pred CCCccchhhHHHHHHHHHHHHHhhhhhhheeecC---CCCCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 45 IDNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPG---GSKNGRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 45 ~~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~---~~~~~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
...+.....+.....+.+..+|.+.|+..+.-+. .+.+..+....+|.+...++..+.++=+.+.+.
T Consensus 105 ~~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a~~ 174 (216)
T d1kqfc_ 105 VGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174 (216)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466677788888888899999999998654221 122233445569999998888888877776654
No 9
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.16 E-value=1.9e+02 Score=21.34 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=58.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhccccCC---------------CCccchhhHHHHHHHHHHHHHhhhhhhheeecCCCCC
Q 031055 19 LSLQFIAF-LLSLIGVWAALKFHNDKGI---------------DNFYSLHSWLGLACVFLFGIQWAAGFTTFWYPGGSKN 82 (166)
Q Consensus 19 ~~l~~~al-~~~~iGl~av~~~~~~~~~---------------~h~~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~~~~~ 82 (166)
..+-.+.+ +..+.|+...+....+.+. --+-+.|.|-.=..+.+..++..-|+.. +.=+.
T Consensus 33 G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~----gsy~~ 108 (261)
T d3cx5c2 33 GSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYY----GSYRS 108 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTTST
T ss_pred HHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHh----ccccC
Confidence 45555555 4588899887766543221 1234678888888888888898888864 21111
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 031055 83 GRASLLPWHVFLGVYIYALAVATAATGIL 111 (166)
Q Consensus 83 ~r~~~~p~H~~~G~~~~~L~i~t~~lGl~ 111 (166)
.| ..-...|..++++.++++.+|..
T Consensus 109 pr----e~~W~~Gv~l~~l~~~~af~GY~ 133 (261)
T d3cx5c2 109 PR----VTLWNVGVIIFILTIATAFLGYC 133 (261)
T ss_dssp TC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc----chhHHhhHHHHHHHHHHHHhhhh
Confidence 12 36678899999999999999976
No 10
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]}
Probab=12.47 E-value=3.8e+02 Score=22.75 Aligned_cols=62 Identities=23% Similarity=0.190 Sum_probs=39.4
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhheeecC---CCCCCc--cchhhHHHHHHHHHHHHHHHHHHHhH
Q 031055 49 YSLHSWLGLACVFLFGIQWAAGFTTFWYPG---GSKNGR--ASLLPWHVFLGVYIYALAVATAATGI 110 (166)
Q Consensus 49 ~S~HswlGl~t~~L~~lQ~~~G~~~fl~p~---~~~~~r--~~~~p~H~~~G~~~~~L~i~t~~lGl 110 (166)
.|||.-+|+...++=.+..++.==++-+|. .+.+.. .++.-=|.|.|-++.+=+-+=+..-+
T Consensus 331 ~S~H~QL~lnLA~lGs~silVAqHmYamPpYpyla~DY~Tq~sLftHH~wIggflivGAfAHaaIF~ 397 (739)
T d1jb0b_ 331 NSLHFQLGWHLACLGVITSLVAQHMYSLPPYAFIAQDHTTMAALYTHHQYIAGFLMVGAFAHGAIFL 397 (739)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcchHHHHHHHhhcCCCccchhhcchhhHhhhhHHHHHhhhhhhcccccceeEE
Confidence 499999999777665555555544444554 233332 34566799999988876666554433
Done!