BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031056
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
           A Mechanism For Ca-Regulation
 pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
           A Mechanism For Ca-Regulation
          Length = 698

 Score = 27.3 bits (59), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 49  YTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTY 108
           Y + ++T     + T   +S+      G E     LD  +   FES  TDT+  SG    
Sbjct: 22  YKITVETGDLRGAGTDASVSIKLTGKDGAETSAFSLDKYFHNDFESGGTDTYDQSGVDVG 81

Query: 109 DICYQYLLRSGSDGWKPE--SVKICGQNIRTVTFFYNTFI 146
           +I    L  +G  G K +    K+  + I   T F N +I
Sbjct: 82  EIAMITLKENGF-GLKSDWYIAKVIIEKIDEATGFSNKYI 120


>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
           Restin- Like Protein 2 Reveals A Swapped-Dimer
          Length = 96

 Score = 26.9 bits (58), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 126 ESVKICGQNIRTVTFFYNTFIPDGVWFG 153
           E V + GQ + T+ FF  T    G W+G
Sbjct: 15  ERVLVVGQRLGTIRFFGTTNFAPGYWYG 42


>pdb|1JHJ|A Chain A, Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE HUMAN
           Anaphase-Promoting Complex
          Length = 171

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 34  EPKTVQLQVAAKSCSYTVIIKTS-CSSKSYTRDKISLAFGDAYGNEVYIKRLD 85
           +P  V +Q   K+   T+ I     S +SYT  KIS+  G+ + N   I++L+
Sbjct: 59  QPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLE 111


>pdb|2QU7|A Chain A, Crystal Structure Of A Putative Transcription Regulator
           From Staphylococcus Saprophyticus Subsp. Saprophyticus
 pdb|2QU7|B Chain B, Crystal Structure Of A Putative Transcription Regulator
           From Staphylococcus Saprophyticus Subsp. Saprophyticus
          Length = 288

 Score = 26.6 bits (57), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 58  SSKSYTRDKISLAFGDAYGNEVYIKRL 84
           S K   +D I + F D+Y NE+Y  +L
Sbjct: 209 SEKEIKKDVIIVGFDDSYWNEIYTPKL 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,571,560
Number of Sequences: 62578
Number of extensions: 175632
Number of successful extensions: 313
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 6
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)