BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031056
         (166 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q49429|P200_MYCGE Protein P200 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
           NCTC 10195) GN=MG386 PE=3 SV=1
          Length = 1616

 Score = 32.0 bits (71), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)

Query: 13  TATIFSH------AGSSIISPTEIKSFEPKTVQLQVAAKS 46
           T  +F H      +  ++++PTE+ +FEP+T++ Q+   S
Sbjct: 924 TEAVFDHQQLENQSEETVVTPTEVTAFEPETIETQLEPSS 963


>sp|Q7ZVM9|RMI1_DANRE RecQ-mediated genome instability protein 1 OS=Danio rerio GN=rmi1
           PE=2 SV=1
          Length = 519

 Score = 30.8 bits (68), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 65  DKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGSDGWK 124
           +++S       GN    + L+   + +  SCST T   S  C     Y   L++G   W 
Sbjct: 337 EEVSFPSRSRLGNTYQSRTLNKVPNTSLASCSTSTLD-SSACKETPMYLCSLQAGC--WP 393

Query: 125 PESVKICGQNIRTVTFFYNTFIPDGVW 151
           P+S ++       VT   N  I  GVW
Sbjct: 394 PKSPQVFRLQAFIVTLVGNLRISGGVW 420


>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila
           mojavensis GN=okr PE=3 SV=1
          Length = 783

 Score = 30.4 bits (67), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 32  SFEPKTVQLQVAAKSCSYTVIIKTSCSSKSYTRDKISLAF 71
           S E K +Q Q   KS S T+I     S K +TRD +   F
Sbjct: 623 SIEEKILQRQTHKKSLSSTIIDNNESSEKHFTRDDLKDLF 662


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,752,483
Number of Sequences: 539616
Number of extensions: 2211115
Number of successful extensions: 4664
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4662
Number of HSP's gapped (non-prelim): 7
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)