Query 031056
Match_columns 166
No_of_seqs 104 out of 285
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06232 ATS3: Embryo-specific 100.0 4.4E-40 9.4E-45 252.3 13.8 123 34-157 2-125 (125)
2 cd01754 PLAT_plant_stress PLAT 100.0 3.3E-33 7.1E-38 215.5 13.1 102 47-149 1-117 (129)
3 cd01753 PLAT_LOX PLAT domain o 100.0 9E-31 1.9E-35 196.9 12.8 101 48-150 2-106 (113)
4 cd01756 PLAT_repeat PLAT/LH2 d 100.0 4.6E-30 9.9E-35 193.6 13.3 102 48-150 2-108 (120)
5 cd01752 PLAT_polycystin PLAT/L 100.0 4.7E-30 1E-34 193.8 13.0 103 47-150 1-108 (120)
6 cd00113 PLAT PLAT (Polycystin- 100.0 3.5E-29 7.5E-34 185.5 13.6 109 47-157 1-114 (116)
7 cd02899 PLAT_SR Scavenger rece 100.0 2E-29 4.4E-34 189.5 12.0 97 48-149 2-99 (109)
8 cd01757 PLAT_RAB6IP1 PLAT/LH2 99.9 1.3E-26 2.8E-31 175.5 12.1 94 48-151 2-100 (114)
9 smart00308 LH2 Lipoxygenase ho 99.9 1E-25 2.3E-30 164.5 13.0 100 48-148 2-104 (105)
10 PF01477 PLAT: PLAT/LH2 domain 99.9 1.2E-24 2.5E-29 159.0 8.5 100 49-151 1-105 (113)
11 cd01755 PLAT_lipase PLAT/ LH2 99.7 9.5E-16 2.1E-20 116.2 11.4 90 47-140 1-102 (120)
12 cd01758 PLAT_LPL PLAT/ LH2 dom 99.4 1.7E-12 3.7E-17 101.2 11.2 91 47-140 1-116 (137)
13 KOG2080 Uncharacterized conser 98.6 3.9E-08 8.5E-13 94.7 5.0 90 48-149 975-1068(1295)
14 cd01759 PLAT_PL PLAT/LH2 domai 98.1 6.9E-05 1.5E-09 56.8 10.5 90 48-144 2-99 (113)
15 TIGR03230 lipo_lipase lipoprot 97.2 0.0032 7E-08 57.6 10.5 113 44-161 306-438 (442)
16 cd01751 PLAT_LH2 PLAT/ LH2 dom 86.8 6.2 0.00013 30.9 8.4 52 98-149 70-125 (137)
17 PF07172 GRP: Glycine rich pro 61.6 5.7 0.00012 29.2 1.8 21 4-24 6-26 (95)
18 PLN02264 lipoxygenase 61.4 31 0.00067 34.8 7.2 51 99-149 159-212 (919)
19 PLN02337 lipoxygenase 52.6 34 0.00073 34.4 5.9 51 99-149 96-150 (866)
20 CHL00038 psbL photosystem II p 48.4 13 0.00028 23.1 1.5 15 5-19 20-34 (38)
21 PLN02305 lipoxygenase 44.3 64 0.0014 32.7 6.3 52 98-149 154-208 (918)
22 PRK00753 psbL photosystem II r 43.6 18 0.00038 22.6 1.6 15 5-19 21-35 (39)
23 PRK10936 TMAO reductase system 33.4 26 0.00056 29.9 1.6 10 1-10 1-10 (343)
24 PF02419 PsbL: PsbL protein; 31.0 36 0.00078 21.1 1.5 15 5-19 19-33 (37)
25 PF03100 CcmE: CcmE; InterPro 29.9 96 0.0021 23.5 4.1 44 52-97 58-101 (131)
26 COG4549 Uncharacterized protei 28.7 77 0.0017 26.0 3.5 100 43-148 34-143 (178)
27 COG3354 FlaG Putative archaeal 25.5 3.6E+02 0.0077 21.7 8.7 31 43-73 66-97 (154)
28 KOG2075 Topoisomerase TOP1-int 23.5 2.1E+02 0.0045 27.3 5.7 55 89-143 441-500 (521)
29 COG5341 Uncharacterized protei 22.2 83 0.0018 24.6 2.5 20 43-62 84-103 (132)
30 smart00112 CA Cadherin repeats 22.0 1.9E+02 0.004 18.8 4.0 31 47-77 45-77 (79)
31 PRK15216 putative fimbrial bio 21.2 2.7E+02 0.0058 25.1 5.7 96 30-131 34-139 (340)
32 PRK13159 cytochrome c-type bio 20.8 2.8E+02 0.0061 22.2 5.3 43 52-96 59-101 (155)
33 PRK03719 ecotin; Provisional 20.6 1.4E+02 0.0031 24.2 3.6 56 38-100 52-107 (166)
34 KOG1693 emp24/gp25L/p24 family 20.5 2.4E+02 0.0051 23.8 5.0 69 44-133 44-114 (209)
No 1
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=100.00 E-value=4.4e-40 Score=252.26 Aligned_cols=123 Identities=66% Similarity=1.195 Sum_probs=116.6
Q ss_pred CchhhhhhhcCCCceEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCC-CcccCCCcceeEeecCCCCCeEE
Q 031056 34 EPKTVQLQVAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYS-RTFESCSTDTFQISGPCTYDICY 112 (166)
Q Consensus 34 ~~~~~~~~~~~~~c~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~-~~FErGsvDtF~v~~~~lG~Ic~ 112 (166)
++.+.+++ +.+.|+|+|+|+|||.++|||+++|+|+|+|++|+++...+||+|.. ++||||++|+|.+.++|+++||+
T Consensus 2 ~~~~~~~~-~~~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~Ld~p~~~~~FErCs~DtF~v~G~C~~~IC~ 80 (125)
T PF06232_consen 2 QQINETEQ-QAGSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPRLDDPGSGDTFERCSTDTFQVTGPCLYQICY 80 (125)
T ss_pred cccchhhh-cCCCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEccCCCCCccCchhcCCcceeEeecccCCcccE
Confidence 55666665 56679999999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred EEEEEcCCCCceeeEEEEEeCCCCeEEEEcCeecCCCceeeecCC
Q 031056 113 QYLLRSGSDGWKPESVKICGQNIRTVTFFYNTFIPDGVWFGFNQC 157 (166)
Q Consensus 113 l~L~hdG~d~W~~e~V~V~~~~~~~~~F~cnrWL~~~~~~~~~~C 157 (166)
|+|+|+|.|||+||+|+|+....++.+|++|+||++|+|||+|+|
T Consensus 81 lyL~r~G~dGW~Pe~V~Iy~~~~~~~~F~~~~~lp~~vwyG~n~C 125 (125)
T PF06232_consen 81 LYLYRSGSDGWKPEWVQIYGSGSKPVTFYFNTFLPNGVWYGFNYC 125 (125)
T ss_pred EEEEEccCCCCEeCeEEEEEcCCCCeEEECCCcCCCCCcccccCC
Confidence 999999999999999999998888999999999999999999999
No 2
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=3.3e-33 Score=215.47 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=89.7
Q ss_pred ceEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCC-------CcCCCcccCCCcceeEeecCC-CCCeEEEEEEEc
Q 031056 47 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLD-------DPYSRTFESCSTDTFQISGPC-TYDICYQYLLRS 118 (166)
Q Consensus 47 c~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld-------~~~~~~FErGsvDtF~v~~~~-lG~Ic~l~L~hd 118 (166)
|.|+|+|+||++++|||||+|+|+|+|++|++ ....|. ++.++.||||++|+|.|..++ +|+|++|+||||
T Consensus 1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s-~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HD 79 (129)
T cd01754 1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPG-LRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSD 79 (129)
T ss_pred CEEEEEEEECCCcccCCcceEEEEEEeCCCCc-ccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEEC
Confidence 78999999999999999999999999999985 455552 356789999999999998765 599999999999
Q ss_pred CC--C-CceeeEEEEEeC-C---CCeEEEEcCeecCCC
Q 031056 119 GS--D-GWKPESVKICGQ-N---IRTVTFFYNTFIPDG 149 (166)
Q Consensus 119 G~--d-~W~~e~V~V~~~-~---~~~~~F~cnrWL~~~ 149 (166)
++ + +|||++|+|++. + +++++|||||||+.+
T Consensus 80 n~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d 117 (129)
T cd01754 80 GTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATD 117 (129)
T ss_pred CCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCC
Confidence 54 3 999999999986 3 358999999999987
No 3
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=99.97 E-value=9e-31 Score=196.88 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=92.3
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEeec-CCCCCeEEEEEEEcCC--C-Cc
Q 031056 48 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISG-PCTYDICYQYLLRSGS--D-GW 123 (166)
Q Consensus 48 ~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~~-~~lG~Ic~l~L~hdG~--d-~W 123 (166)
.|+|+|+||++++|||||+|+|+|+|++|+ +....|+++.+ +||||++|+|.+.. .++|+|++|+||||+. + +|
T Consensus 2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~-S~~~~L~~~~~-~FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W 79 (113)
T cd01753 2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGE-SEKQLLDRPGY-DFERGAVDEYKVKVPEDLGELLLVRLRKRKYLLFDAW 79 (113)
T ss_pred EEEEEEEECCCcCCccccEEEEEEEECCCc-ccCEEcCCCCC-ccCCCCeeEEEEecccCCCCcEEEEEEECCCCCCCCe
Confidence 699999999999999999999999999997 57788888775 49999999999987 5789999999999954 3 99
Q ss_pred eeeEEEEEeCCCCeEEEEcCeecCCCc
Q 031056 124 KPESVKICGQNIRTVTFFYNTFIPDGV 150 (166)
Q Consensus 124 ~~e~V~V~~~~~~~~~F~cnrWL~~~~ 150 (166)
||++|+|+++.++.+.|||||||+++.
T Consensus 80 ~l~~V~V~~~~~~~~~F~c~rWl~~~~ 106 (113)
T cd01753 80 FCNYITVTGPGGDEYHFPCYRWIEGYG 106 (113)
T ss_pred eecEEEEEcCCCCEEEEEhHHeECCCC
Confidence 999999998889999999999999873
No 4
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.97 E-value=4.6e-30 Score=193.65 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=94.4
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCc-CCCcccCCCcceeEeecCCCCCeEEEEEEEcCC---CCc
Q 031056 48 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDP-YSRTFESCSTDTFQISGPCTYDICYQYLLRSGS---DGW 123 (166)
Q Consensus 48 ~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~-~~~~FErGsvDtF~v~~~~lG~Ic~l~L~hdG~---d~W 123 (166)
.|+|+|+||+.++|||||+|+|+|+|++|+ +....|+++ .+++||||++|+|.+....+|+|.+|+||||+. ++|
T Consensus 2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~-s~~~~L~~~~~~~~FerGs~d~F~i~~~~lG~l~~i~i~~d~~g~~~~W 80 (120)
T cd01756 2 TYEVTVKTGDVKGAGTDANVFITLYGENGD-TGKRKLKKSNNKNKFERGQTDKFTVEAVDLGKLKKIRIGHDNSGLGAGW 80 (120)
T ss_pred EEEEEEEECCCcCCCCCcEEEEEEEeCCCc-cccEEccCCCcCCcccCCCeEEEEEEecCCCCeEEEEEEECCCCCCCCc
Confidence 699999999999999999999999999997 578889886 678999999999999888889999999999954 399
Q ss_pred eeeEEEEEeC-CCCeEEEEcCeecCCCc
Q 031056 124 KPESVKICGQ-NIRTVTFFYNTFIPDGV 150 (166)
Q Consensus 124 ~~e~V~V~~~-~~~~~~F~cnrWL~~~~ 150 (166)
||++|+|+++ +++.+.|||+|||+.+.
T Consensus 81 ~~~~V~V~~~~~~~~~~F~~~~Wl~~~~ 108 (120)
T cd01756 81 FLDKVEIREPGTGDEYTFPCNRWLDKDE 108 (120)
T ss_pred EEeEEEEEECCCceEEEEEeCCccCCCC
Confidence 9999999988 78999999999999874
No 5
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.97 E-value=4.7e-30 Score=193.76 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=94.2
Q ss_pred ceEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEeec-CCCCCeEEEEEEEcCC--C-C
Q 031056 47 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISG-PCTYDICYQYLLRSGS--D-G 122 (166)
Q Consensus 47 c~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~~-~~lG~Ic~l~L~hdG~--d-~ 122 (166)
+.|+|+|+||++++|||||+|+|+|+|++|++ ....|.++.+++||||++|+|.+.. .++|+|++|+||||+. + +
T Consensus 1 ~~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s-~~~~L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~ 79 (120)
T cd01752 1 YLYLVTVFTGWRRGAGTTAKVTITLYGAEGES-EPHHLRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNSGLSPS 79 (120)
T ss_pred CEEEEEEEECCCCCCCcccEEEEEEEeCCCCc-ccEEcCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCCCCCCC
Confidence 47999999999999999999999999999974 6788988888999999999999986 5789999999999954 3 9
Q ss_pred ceeeEEEEEeC-CCCeEEEEcCeecCCCc
Q 031056 123 WKPESVKICGQ-NIRTVTFFYNTFIPDGV 150 (166)
Q Consensus 123 W~~e~V~V~~~-~~~~~~F~cnrWL~~~~ 150 (166)
|||++|+|+++ +++.+.|||+|||+.+.
T Consensus 80 W~l~~V~V~~~~t~~~~~F~~~rWl~~~~ 108 (120)
T cd01752 80 WYLSRVIVRDLQTGKKWFFLCNDWLSVEE 108 (120)
T ss_pred eEEEEEEEEECCCCcEEEEEeCcEECCcC
Confidence 99999999988 78999999999999763
No 6
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.96 E-value=3.5e-29 Score=185.51 Aligned_cols=109 Identities=37% Similarity=0.456 Sum_probs=95.8
Q ss_pred ceEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEeecC-CCCCeEEEEEEEcCCC---C
Q 031056 47 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGP-CTYDICYQYLLRSGSD---G 122 (166)
Q Consensus 47 c~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~~~-~lG~Ic~l~L~hdG~d---~ 122 (166)
|.|+|+|+||+..+|||+++|+|.|+|++|++. ...|.+.... ||||++|+|.+..+ ++|+|++|+||||+.+ +
T Consensus 1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~-~~~l~~~~~~-f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~ 78 (116)
T cd00113 1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSS-DIPILDGPGS-FERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDG 78 (116)
T ss_pred CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcc-cEEccCCCCc-ccCCCceEEEEeccCCCcCeEEEEEEECCCCCCCC
Confidence 689999999999999999999999999999864 4455443323 99999999999876 7799999999999764 9
Q ss_pred ceeeEEEEEeC-CCCeEEEEcCeecCCCceeeecCC
Q 031056 123 WKPESVKICGQ-NIRTVTFFYNTFIPDGVWFGFNQC 157 (166)
Q Consensus 123 W~~e~V~V~~~-~~~~~~F~cnrWL~~~~~~~~~~C 157 (166)
|||++|+|+++ +++.+.|+|++||+.+.++..++|
T Consensus 79 W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~ 114 (116)
T cd00113 79 WYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRS 114 (116)
T ss_pred EEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceee
Confidence 99999999987 679999999999999988877665
No 7
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.96 E-value=2e-29 Score=189.49 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=89.2
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEeecCCCCCeEEEEEEEcCCC-Cceee
Q 031056 48 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGSD-GWKPE 126 (166)
Q Consensus 48 ~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~~~~lG~Ic~l~L~hdG~d-~W~~e 126 (166)
.|+|+|+||...+|||+++|+|+|+|++|.+ ....|++ +||||++|+|.|+..++|+|.+|+|+++|.+ +|||+
T Consensus 2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S-~~~~L~~----~F~~G~~d~F~v~~~dLG~l~~i~l~n~g~~~~Wf~~ 76 (109)
T cd02899 2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRS-NPKTLSQ----GFYPGSLKRIRFRAADVGDINAIILSNTALNDPWYCD 76 (109)
T ss_pred eEEEEEEECCCCCCCccceEEEEEEECCCCc-CCEEccC----ccCCCceEEEEECccccCceEEEEEECCCCCCCceee
Confidence 6999999999999999999999999999974 6677764 6999999999999888899999999888864 99999
Q ss_pred EEEEEeCCCCeEEEEcCeecCCC
Q 031056 127 SVKICGQNIRTVTFFYNTFIPDG 149 (166)
Q Consensus 127 ~V~V~~~~~~~~~F~cnrWL~~~ 149 (166)
+|+|++++++.+.|||||||+..
T Consensus 77 ~V~V~~~~g~~~~Fpc~rWla~~ 99 (109)
T cd02899 77 YVRIKSEDGKVFAFNVKRWIGYP 99 (109)
T ss_pred EEEEECCCCCEEEEEcceeeCCc
Confidence 99999998899999999999964
No 8
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=99.94 E-value=1.3e-26 Score=175.51 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=81.6
Q ss_pred eEEEEEEcCCC-CCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEeecCCCCCeEEEEEEEcCC--C-Cc
Q 031056 48 SYTVIIKTSCS-SKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGS--D-GW 123 (166)
Q Consensus 48 ~Y~V~V~TG~~-~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~~~~lG~Ic~l~L~hdG~--d-~W 123 (166)
.|+|+|+||.. ++|||+|||+|+|+|++|+ +.+..|++. .| .|.+...+||+|.+|+||||++ + +|
T Consensus 2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~-s~~~~L~~~---~f------~~~v~~~~LG~L~~irIwHDnsG~~~~W 71 (114)
T cd01757 2 PYHVVIVPSKKLGGSMFTANPWICVSGELGE-TPPLQIPKN---SL------EMTFDCQNLGKLTTVQIGHDNSGLLAKW 71 (114)
T ss_pred eEEEEEEeCCCCCCCCCcceEEEEEEEcCCC-cCCEEecCC---ce------EEEEecCCcCCcEEEEEEECCCCCCCCe
Confidence 69999999999 5999999999999999997 577788632 33 5777678899999999999954 3 99
Q ss_pred eeeEEEEEeC-CCCeEEEEcCeecCCCce
Q 031056 124 KPESVKICGQ-NIRTVTFFYNTFIPDGVW 151 (166)
Q Consensus 124 ~~e~V~V~~~-~~~~~~F~cnrWL~~~~~ 151 (166)
||++|+|+++ ++++|.|||||||+.+..
T Consensus 72 fl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 72 LVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred eeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 9999999985 899999999999997644
No 9
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.94 E-value=1e-25 Score=164.47 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=87.7
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEeec-CCCCCeEEEEEEEcC-CCCcee
Q 031056 48 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISG-PCTYDICYQYLLRSG-SDGWKP 125 (166)
Q Consensus 48 ~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~~-~~lG~Ic~l~L~hdG-~d~W~~ 125 (166)
.|+|+|.||...+|||||+|+|+|+|++|++ ....+....+..||||++|+|.+.. .++|+|.+|+||||+ ..+|||
T Consensus 2 ~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s-~~~~~~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l 80 (105)
T smart00308 2 KYKVTVTTGGLDFAGTTASVSLSLVGAEGDG-KESKLDYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFL 80 (105)
T ss_pred EEEEEEEECCccCCCccceEEEEEEeCCCCC-cceeccccCCccccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEE
Confidence 6999999999999999999999999999762 3444544444569999999999987 468999999999998 569999
Q ss_pred eEEEEEeC-CCCeEEEEcCeecCC
Q 031056 126 ESVKICGQ-NIRTVTFFYNTFIPD 148 (166)
Q Consensus 126 e~V~V~~~-~~~~~~F~cnrWL~~ 148 (166)
++|+|+++ +++.+.|+||+||+.
T Consensus 81 ~~V~V~~~~~~~~~~F~c~~Wl~~ 104 (105)
T smart00308 81 KSITVKDLPTGGKYHFPCNSWVYP 104 (105)
T ss_pred EEEEEEECCCCCEEEEEcCceeCC
Confidence 99999986 889999999999975
No 10
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.91 E-value=1.2e-24 Score=158.98 Aligned_cols=100 Identities=27% Similarity=0.267 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEeec-CCCCCeEEEEEEEcCC---CCce
Q 031056 49 YTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISG-PCTYDICYQYLLRSGS---DGWK 124 (166)
Q Consensus 49 Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~~-~~lG~Ic~l~L~hdG~---d~W~ 124 (166)
|+|+|+||+..+|||||+|+|.|+|++|++ ....|.++....+ |++|+|.+.. .++|+|.+|+|+|++. ++||
T Consensus 1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s-~~~~l~~~~~~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~ 77 (113)
T PF01477_consen 1 YRVTVKTGDERGAGTDANVYITLYGSKGKS-GEIELLDPSGFNF--GSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSWY 77 (113)
T ss_dssp EEEEEEEESSTEEEESSEEEEEEEETTEEE-EEEEEEEEEETST--TEEEEEEEEESSCGCSEEEEEEEEESSSSSSEEE
T ss_pred CEEEEEECCCCCCCcCCeEEEEEEECCCCc-ceEEEeeeeeccc--CceEEeeeeecccCCCCcEEEEEEccCCCccceE
Confidence 999999999999999999999999999975 4555554432333 9999999987 6789999999999954 3999
Q ss_pred eeEEEEEeC-CCCeEEEEcCeecCCCce
Q 031056 125 PESVKICGQ-NIRTVTFFYNTFIPDGVW 151 (166)
Q Consensus 125 ~e~V~V~~~-~~~~~~F~cnrWL~~~~~ 151 (166)
|++|+|+++ +++.+.|+||+||..+..
T Consensus 78 l~~V~V~~~~~~~~~~F~~~~Wl~~~~~ 105 (113)
T PF01477_consen 78 LDSVVVTDGETGRTYTFPCNRWLDPDKD 105 (113)
T ss_dssp EEEEEEEETTTSEEEEEEEEEEESTTEG
T ss_pred EEEEEEEeCCCCcEEEEEcCCEECCCCC
Confidence 999999986 889999999999998753
No 11
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.66 E-value=9.5e-16 Score=116.25 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=78.1
Q ss_pred ceEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEee-cCCCCCeEEEEEEEcC----C-
Q 031056 47 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQIS-GPCTYDICYQYLLRSG----S- 120 (166)
Q Consensus 47 c~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~-~~~lG~Ic~l~L~hdG----~- 120 (166)
+.|+|+|.||...+|||+++|+|.|+|++|++ ....|..+ .||+|++++|.+. ..++|+|.+|++|||+ .
T Consensus 1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s-~~~~l~~~---~~~~g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~ 76 (120)
T cd01755 1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGET-EQLPIVLG---ELKPNKTYSFLIDTEVDIGDLLKVKFKWENNVINSN 76 (120)
T ss_pred CEEEEEEEEeCccccCcCccEEEEEEcCCCCc-ccEEEeCC---cccCCCEEEEEEEcCCCccceEEEEEEEcCCCcccc
Confidence 47999999999999999999999999999984 67777543 4799999999995 5778999999999993 2
Q ss_pred ----C-CceeeEEEEEeC-CCCeEEE
Q 031056 121 ----D-GWKPESVKICGQ-NIRTVTF 140 (166)
Q Consensus 121 ----d-~W~~e~V~V~~~-~~~~~~F 140 (166)
. .|++++|.|++. +++++.|
T Consensus 77 ~~~~~p~~~~~~I~Vq~get~~~~~F 102 (120)
T cd01755 77 SGETLPKLGARKIRVKSGETQKKFTF 102 (120)
T ss_pred cccCCCcEEEEEEEEEECCCCCEEEE
Confidence 3 999999999987 6777776
No 12
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.43 E-value=1.7e-12 Score=101.15 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=75.8
Q ss_pred ceEEEEEEcCCCCCCc-CceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEee-cCCCCCeEEEEE-EEcCC--C
Q 031056 47 CSYTVIIKTSCSSKSY-TRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQIS-GPCTYDICYQYL-LRSGS--D 121 (166)
Q Consensus 47 c~Y~V~V~TG~~~~AG-Tda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~-~~~lG~Ic~l~L-~hdG~--d 121 (166)
+.|+|+|.||....|| |+++|+|.|+|.+|++ ....|..+ ..+++|++++|.+. ..++|+|.+|++ |||.. .
T Consensus 1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S-~~~~l~~~--~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~n~~~~ 77 (137)
T cd01758 1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGES-ENLPLTLP--EGITGNKTNSFLITTEKDIGDLLMLKLKWEGSSLWS 77 (137)
T ss_pred CeEEEEEEEecccCCCcccceEEEEEEcCCCcc-cCEEEecC--cccCCCCeEEEEEECCCCcCCEEEEEEEEeCCCCCC
Confidence 4799999999999999 9999999999999974 67777654 34699999999995 578899999999 99843 2
Q ss_pred -Cce------------------eeEEEEEeC-CCCeEEE
Q 031056 122 -GWK------------------PESVKICGQ-NIRTVTF 140 (166)
Q Consensus 122 -~W~------------------~e~V~V~~~-~~~~~~F 140 (166)
+|+ .++|.|+.. +.+++.|
T Consensus 78 ~sW~~~~~~~~~~~~~~~p~l~~~~I~Vk~GEtq~~~~F 116 (137)
T cd01758 78 NSWWTVQTIIPWSGWWRGSGLTIRKIRVKAGETQKKMTF 116 (137)
T ss_pred hhhhccccccccccccCCCeEEEEEEEEEeCCCccEEEE
Confidence 774 688999866 5566666
No 13
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=98.61 E-value=3.9e-08 Score=94.73 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=77.7
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEeecCCCCCeEEEEEEEcCC--C-Cce
Q 031056 48 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGS--D-GWK 124 (166)
Q Consensus 48 ~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~~~~lG~Ic~l~L~hdG~--d-~W~ 124 (166)
.|.|.|.|| .+.|+.++|-|.+.|+-+.+ ....|+ + ++=.|.+....||.+.-|+|.||.+ . -|+
T Consensus 975 ~Y~vvIv~~--~g~~~~~~iWi~vsGsl~eT-~~i~~~-~--------n~~~f~F~~kNLG~LtT~rIGHdnS~~~~kW~ 1042 (1295)
T KOG2080|consen 975 DYQVVIVTG--SGRGAIPAIWVTVEGSLCST-PPIMLK-P--------NTPLFKFDHKNLGILSTLRIGHQQSEKPVQWF 1042 (1295)
T ss_pred ceEEEEEeC--CCCcccCceEEEEecccCCC-CceeeC-C--------CCceeEEeccccceeeeEEecccCCCcchHHH
Confidence 599999999 78999999999999999863 444442 1 4567888999999999999999954 3 999
Q ss_pred eeEEEEEeC-CCCeEEEEcCeecCCC
Q 031056 125 PESVKICGQ-NIRTVTFFYNTFIPDG 149 (166)
Q Consensus 125 ~e~V~V~~~-~~~~~~F~cnrWL~~~ 149 (166)
+|+|.|.+. +|++|.|||.||+..|
T Consensus 1043 vEyV~vRNEiTG~TYKFPCGrw~G~g 1068 (1295)
T KOG2080|consen 1043 LEYVLVRNEITGQTYKFPCGRWFGNG 1068 (1295)
T ss_pred HHHhhhhceeccceeccccccccCCc
Confidence 999999988 9999999999999876
No 14
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=98.06 E-value=6.9e-05 Score=56.82 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=69.1
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEee-cCCCCCeEEEEEEEcCCC-----
Q 031056 48 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQIS-GPCTYDICYQYLLRSGSD----- 121 (166)
Q Consensus 48 ~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~-~~~lG~Ic~l~L~hdG~d----- 121 (166)
.|+|+|.-+.... ++..++|.|+|.+|++ ....+. ...|+.|++-+|.+. ..++|+|.+|+++.++.-
T Consensus 2 ~Yqv~V~~s~~~~--~~g~~~vsL~G~~g~s-~~~~i~---~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~ 75 (113)
T cd01759 2 RYKVSVTLSGKKK--VTGTILVSLYGNKGNT-RQYEIF---KGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNVINITL 75 (113)
T ss_pred eEEEEEEEecccc--cCceEEEEEEcCCCCc-cceEEE---eeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCccCCCC
Confidence 5999998776544 8899999999999984 555553 246999999999995 577799999999998641
Q ss_pred -CceeeEEEEEeC-CCCeEEEEcCe
Q 031056 122 -GWKPESVKICGQ-NIRTVTFFYNT 144 (166)
Q Consensus 122 -~W~~e~V~V~~~-~~~~~~F~cnr 144 (166)
.=+.++|.|+.. +++++.| |-+
T Consensus 76 p~~~~~~I~Vq~Ge~~~~~~F-C~~ 99 (113)
T cd01759 76 PKVGAEKITVQSGKDGKVFNF-CSS 99 (113)
T ss_pred CeEEEEEEEEEeCCCccEEEE-CCC
Confidence 223799999976 5566666 443
No 15
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=97.22 E-value=0.0032 Score=57.61 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=81.9
Q ss_pred CCCceEEEEEEcCCCCC-CcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEee-cCCCCCeEEEEEEEcCCC
Q 031056 44 AKSCSYTVIIKTSCSSK-SYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQIS-GPCTYDICYQYLLRSGSD 121 (166)
Q Consensus 44 ~~~c~Y~V~V~TG~~~~-AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~-~~~lG~Ic~l~L~hdG~d 121 (166)
-....|+|+|....... .+++..+.|.|+|..|++ ....+. ...++.|++-+|.+. ...+|++.+|+++.++..
T Consensus 306 f~~~~y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~---~~~~~~~~t~~~~i~~~~~~g~~~~v~~~w~~~~ 381 (442)
T TIGR03230 306 YKVFHYQVKVHFFGKTSLSHTDQPMKISLYGTHGEK-ENIPFT---LPEVSTNKTYSFLITTDVDIGELLMVKLKWEKDT 381 (442)
T ss_pred ceEEEEEEEEEEeccccccccCCcEEEEEEcCCCCc-cceEEe---eeeecCCCeEEEEEecccCCCceEEEEEEEeCCC
Confidence 44567999999886544 478899999999999974 444443 246999999999995 567799999999998653
Q ss_pred --Cce---------eeEEEEEeC-CCCeEEEEcCe------ecCCCceeeecCCCCCC
Q 031056 122 --GWK---------PESVKICGQ-NIRTVTFFYNT------FIPDGVWFGFNQCRRGS 161 (166)
Q Consensus 122 --~W~---------~e~V~V~~~-~~~~~~F~cnr------WL~~~~~~~~~~C~~~~ 161 (166)
.|. .++|+|+.. +.+++.| |-+ =+..+.-..+=.|....
T Consensus 382 ~~~~~~~~~~~~~~~~~i~v~~ge~~~~~~f-c~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (442)
T TIGR03230 382 YISWSDWWSSPGFHIRKLRIKSGETQSKVIF-SAKEGEFSYLQRGGEAAVFVKCKEKS 438 (442)
T ss_pred cccchhhhcCCceeEEEEEEEeCCCccEEEE-CCCCCCcceeccCCcceeEEeecccc
Confidence 776 889999966 5666776 422 22233444466676544
No 16
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=86.80 E-value=6.2 Score=30.86 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=39.7
Q ss_pred ceeEee--c-CCCCCeEEEEEEEcCCCCceeeEEEEEeC-CCCeEEEEcCeecCCC
Q 031056 98 DTFQIS--G-PCTYDICYQYLLRSGSDGWKPESVKICGQ-NIRTVTFFYNTFIPDG 149 (166)
Q Consensus 98 DtF~v~--~-~~lG~Ic~l~L~hdG~d~W~~e~V~V~~~-~~~~~~F~cnrWL~~~ 149 (166)
..|.+. . ...|.+=.+.|.-.=..--|++.|++.+. ...+.+|.||.|+...
T Consensus 70 ~~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~ 125 (137)
T cd01751 70 SAYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPK 125 (137)
T ss_pred eEEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccC
Confidence 378763 2 44588888877755556999999999865 4478999999999854
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=61.65 E-value=5.7 Score=29.18 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHhhcCCccc
Q 031056 4 LLLFLLIFATATIFSHAGSSI 24 (166)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (166)
+|||.|+|+..+++|++++..
T Consensus 6 ~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhH
Confidence 677777777777777777654
No 18
>PLN02264 lipoxygenase
Probab=61.36 E-value=31 Score=34.84 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=38.9
Q ss_pred eeEee---cCCCCCeEEEEEEEcCCCCceeeEEEEEeCCCCeEEEEcCeecCCC
Q 031056 99 TFQIS---GPCTYDICYQYLLRSGSDGWKPESVKICGQNIRTVTFFYNTFIPDG 149 (166)
Q Consensus 99 tF~v~---~~~lG~Ic~l~L~hdG~d~W~~e~V~V~~~~~~~~~F~cnrWL~~~ 149 (166)
.|.+. ....|.+=.+.|.-.-..--|++.|++++..+.+.+|.||.|+-..
T Consensus 159 ~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~ 212 (919)
T PLN02264 159 HYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQ 212 (919)
T ss_pred EEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccC
Confidence 77764 2445888777776555568999999998764478999999999854
No 19
>PLN02337 lipoxygenase
Probab=52.64 E-value=34 Score=34.40 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=39.2
Q ss_pred eeEee---cCCCCCeEEEEEEEcCCCCceeeEEEEEeC-CCCeEEEEcCeecCCC
Q 031056 99 TFQIS---GPCTYDICYQYLLRSGSDGWKPESVKICGQ-NIRTVTFFYNTFIPDG 149 (166)
Q Consensus 99 tF~v~---~~~lG~Ic~l~L~hdG~d~W~~e~V~V~~~-~~~~~~F~cnrWL~~~ 149 (166)
.|.+. ....|.+=.+.|.-.-..--|++.|++++. +..+.+|+||.|+-..
T Consensus 96 ~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~ 150 (866)
T PLN02337 96 AFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPA 150 (866)
T ss_pred EEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccC
Confidence 67763 245588888777766556899999999865 5468999999999864
No 20
>CHL00038 psbL photosystem II protein L
Probab=48.42 E-value=13 Score=23.10 Aligned_cols=15 Identities=47% Similarity=0.673 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhc
Q 031056 5 LLFLLIFATATIFSH 19 (166)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (166)
.-|+|||+.++.||+
T Consensus 20 ~GLLlifvl~vlfss 34 (38)
T CHL00038 20 WGLLLIFVLAVLFSN 34 (38)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999987764
No 21
>PLN02305 lipoxygenase
Probab=44.30 E-value=64 Score=32.70 Aligned_cols=52 Identities=12% Similarity=-0.038 Sum_probs=39.2
Q ss_pred ceeEee---cCCCCCeEEEEEEEcCCCCceeeEEEEEeCCCCeEEEEcCeecCCC
Q 031056 98 DTFQIS---GPCTYDICYQYLLRSGSDGWKPESVKICGQNIRTVTFFYNTFIPDG 149 (166)
Q Consensus 98 DtF~v~---~~~lG~Ic~l~L~hdG~d~W~~e~V~V~~~~~~~~~F~cnrWL~~~ 149 (166)
..|.+. ....|.+=.+.|.-.-..--|++.|++++.-+.+.+|.||.|+-..
T Consensus 154 ~~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~ 208 (918)
T PLN02305 154 VEYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSR 208 (918)
T ss_pred eEEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccC
Confidence 367763 2445887777776555568999999998764478999999999854
No 22
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=43.60 E-value=18 Score=22.62 Aligned_cols=15 Identities=40% Similarity=0.671 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhc
Q 031056 5 LLFLLIFATATIFSH 19 (166)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (166)
+-|+|||+.++.||+
T Consensus 21 ~GlLlifvl~vLFss 35 (39)
T PRK00753 21 LGLLLVFVLGILFSS 35 (39)
T ss_pred HHHHHHHHHHHHHHh
Confidence 457899999988774
No 23
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=33.41 E-value=26 Score=29.95 Aligned_cols=10 Identities=60% Similarity=0.790 Sum_probs=7.6
Q ss_pred ChhhHHHHHH
Q 031056 1 MVKLLLFLLI 10 (166)
Q Consensus 1 ~~~~~~~~~~ 10 (166)
|+|++||+|-
T Consensus 1 ~~~~~~~~~~ 10 (343)
T PRK10936 1 MRKLLFLLLS 10 (343)
T ss_pred ChhHHHHHHH
Confidence 8998877664
No 24
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=31.02 E-value=36 Score=21.10 Aligned_cols=15 Identities=47% Similarity=0.642 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhc
Q 031056 5 LLFLLIFATATIFSH 19 (166)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (166)
.-|+|||+.++.||+
T Consensus 19 ~GLllifvl~vLFss 33 (37)
T PF02419_consen 19 WGLLLIFVLAVLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 457888888877764
No 25
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=29.92 E-value=96 Score=23.55 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=21.0
Q ss_pred EEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCc
Q 031056 52 IIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCST 97 (166)
Q Consensus 52 ~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsv 97 (166)
.|+.|......-...+.+.+.|.. ++. ...-.++..+.|+.|+-
T Consensus 58 ~V~~gSv~~~~~~~~~~F~i~D~~-~~i-~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 58 LVVEGSVEYDPDGNTLTFTITDGG-KEI-PVVYTGPLPDLFREGQG 101 (131)
T ss_dssp EEECTTEEE-TTSSEEEEEEE-SS--EE-EEEEES--CTT--TTSE
T ss_pred EEccCCEEEcCCCCEEEEEEEECC-cEE-EEEECCCCCccccCCCe
Confidence 355565544434567778888774 333 33334445577887763
No 26
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.74 E-value=77 Score=26.00 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=52.7
Q ss_pred cCCCceEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCC-CcccCC-CcceeEeecCCCCCeEEEEEEEcCC
Q 031056 43 AAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYS-RTFESC-STDTFQISGPCTYDICYQYLLRSGS 120 (166)
Q Consensus 43 ~~~~c~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~-~~FErG-svDtF~v~~~~lG~Ic~l~L~hdG~ 120 (166)
.....+|++.|=-||-..|-|.-.|-| ..|-. ....-..|+. -.-.+| -.-+|+.++...-+=.+=+-|..|.
T Consensus 34 ~gs~~~atlrVPhgcdgkaTtkV~vkl----PeGvi-~~kp~PkpGW~le~~Kg~y~~ty~~hG~~i~~G~~ev~w~~gn 108 (178)
T COG4549 34 AGSTYKATLRVPHGCDGKATTKVRVKL----PEGVI-FAKPQPKPGWTLETIKGDYEKTYQNHGSGITSGVKEVFWKGGN 108 (178)
T ss_pred CCceEEEEEecCCCCCCCcceEEEEeC----CCcee-eecccCCCCcEEEEeecceeeeeeccCCccccceeEEEeccCC
Confidence 467788999999998877766544443 34421 1111122210 001111 2245666665542223345566654
Q ss_pred --CCceeeEEEEE-----e-CCCCeEEEEcCeecCC
Q 031056 121 --DGWKPESVKIC-----G-QNIRTVTFFYNTFIPD 148 (166)
Q Consensus 121 --d~W~~e~V~V~-----~-~~~~~~~F~cnrWL~~ 148 (166)
|.-| +--.|+ | |.+..-.|+.-|--.+
T Consensus 109 lPde~Y-D~fvV~~~la~D~p~~~tl~f~~~Q~cg~ 143 (178)
T COG4549 109 LPDEFY-DEFVVRGTLAEDTPVGTTLIFPVTQECGD 143 (178)
T ss_pred Cchhhc-cceEEEEEecCCCcccceEecceEEeecC
Confidence 4666 433443 1 2467788988776555
No 27
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=25.55 E-value=3.6e+02 Score=21.70 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=25.0
Q ss_pred cCCCceEEEEEE-cCCCCCCcCceeEEEEEEe
Q 031056 43 AAKSCSYTVIIK-TSCSSKSYTRDKISLAFGD 73 (166)
Q Consensus 43 ~~~~c~Y~V~V~-TG~~~~AGTda~V~I~L~g 73 (166)
.+..++|++.|| ||+...+-+...|.+.+=|
T Consensus 66 ~~g~~t~t~yiKNtG~~~~~fd~~sitVliDG 97 (154)
T COG3354 66 TDGPYTYTFYIKNTGSDSIAFDNTSITVLIDG 97 (154)
T ss_pred CCCceEEEEEEecCCCcccccCCCeEEEEEcC
Confidence 346778999998 8888889888888887655
No 28
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=23.52 E-value=2.1e+02 Score=27.27 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=40.4
Q ss_pred CCcccCCCcceeEee-cCC---C-CCeEEEEEEEcCCCCceeeEEEEEeCCCCeEEEEcC
Q 031056 89 SRTFESCSTDTFQIS-GPC---T-YDICYQYLLRSGSDGWKPESVKICGQNIRTVTFFYN 143 (166)
Q Consensus 89 ~~~FErGsvDtF~v~-~~~---l-G~Ic~l~L~hdG~d~W~~e~V~V~~~~~~~~~F~cn 143 (166)
...+.-|++++|.|. .++ + +.+..+.+--+|.+.||.-+=-+.+.+.+++.|-|+
T Consensus 441 t~~~cdGs~~~~~v~F~ePv~I~p~~~yta~~i~~g~d~~yg~~g~~~vv~~~~~~f~~~ 500 (521)
T KOG2075|consen 441 TYFHCDGSSSTFRVMFDEPVEILPNQIYTAYVILRGIDSYYGTEGMVPVVNENRFQFMSS 500 (521)
T ss_pred eEEEecCcccccccccCCcceecCCceEEEEEEecCcccccccccceeeccCCeEEEEec
Confidence 356788999999874 222 2 567888888889988998777777666666777664
No 29
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.24 E-value=83 Score=24.64 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=13.7
Q ss_pred cCCCceEEEEEEcCCCCCCc
Q 031056 43 AAKSCSYTVIIKTSCSSKSY 62 (166)
Q Consensus 43 ~~~~c~Y~V~V~TG~~~~AG 62 (166)
..++|.=+|-|+||-.+.+|
T Consensus 84 ~esNcpdqi~Vk~G~i~k~G 103 (132)
T COG5341 84 VESNCPDQICVKTGWISKPG 103 (132)
T ss_pred EecCCCcEEEEEeceecCCC
Confidence 45567777777777776555
No 30
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=22.01 E-value=1.9e+02 Score=18.81 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=23.4
Q ss_pred ceEEEEEEcCCCCC--CcCceeEEEEEEeCCCC
Q 031056 47 CSYTVIIKTSCSSK--SYTRDKISLAFGDAYGN 77 (166)
Q Consensus 47 c~Y~V~V~TG~~~~--AGTda~V~I~L~g~~G~ 77 (166)
-.|.+.|.-.+... ..+...|.|.+.+.+.+
T Consensus 45 ~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~ 77 (79)
T smart00112 45 PEYTLTVEATDGGGPPLSSTATVTVTVLDVNDN 77 (79)
T ss_pred CeEEEEEEEEECCCCCcccEEEEEEEEEECCCC
Confidence 46777777666544 67889999999998864
No 31
>PRK15216 putative fimbrial biosynthesis regulatory protein; Provisional
Probab=21.17 E-value=2.7e+02 Score=25.13 Aligned_cols=96 Identities=10% Similarity=0.092 Sum_probs=56.3
Q ss_pred ccc-CCchhhhhhh-----cCCCc--eEEEE-EEcCCC-CCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcce
Q 031056 30 IKS-FEPKTVQLQV-----AAKSC--SYTVI-IKTSCS-SKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDT 99 (166)
Q Consensus 30 ~~~-~~~~~~~~~~-----~~~~c--~Y~V~-V~TG~~-~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDt 99 (166)
..+ |+++-+|+.. .+..| +|+|+ .+|+|. -|.|=+++|-+.|.=+=-+. ....|++.. .-||.|
T Consensus 34 ~~d~~~l~~~q~~~~~~~f~d~~c~~t~~vt~~~~sd~ivg~~~~d~vklkl~~~w~~~-~~i~~~n~~-~~~~~~---- 107 (340)
T PRK15216 34 QSDSLMLGGEESAIITNGFTDANCSNSDVVTKLETSDHIIGMGPNDSVKLKLKVEWQSS-SAINMRNQN-GVIEAP---- 107 (340)
T ss_pred ecceEEeccceeeEeeccccccccccCceeeccCccceEEeeCCCCeEEEEEEEEEecC-CceEeecCC-Ceeecc----
Confidence 345 7777777643 55566 46665 344443 45667777777664433221 233555544 567765
Q ss_pred eEeecCCCCCeEEEEEEEcCCCCceeeEEEEE
Q 031056 100 FQISGPCTYDICYQYLLRSGSDGWKPESVKIC 131 (166)
Q Consensus 100 F~v~~~~lG~Ic~l~L~hdG~d~W~~e~V~V~ 131 (166)
|+|+..+......+.|.-+|.++=-.+-|.+.
T Consensus 108 y~vtvs~~~s~~~v~isa~~g~sv~i~~ia~~ 139 (340)
T PRK15216 108 YKITISEINSLEAVTVSARGGYSVTIDNITVM 139 (340)
T ss_pred eEEEEeeccCCceEEEecCCCceEEEcceEEe
Confidence 67766555666677777776666555655554
No 32
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.77 E-value=2.8e+02 Score=22.21 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=26.7
Q ss_pred EEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCC
Q 031056 52 IIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCS 96 (166)
Q Consensus 52 ~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGs 96 (166)
.|+.|.....+-.-.|.+.+.|... +. ...-..--.+.|..|+
T Consensus 59 ~V~~GSv~r~~~~~~v~F~vtD~~~-~v-~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 59 MVKAGSIQRAADSLKVSFTVIDKNA-AT-QVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEecCcEEEcCCCcEEEEEEEcCCc-EE-EEEEccCCCccccCCC
Confidence 4788888776655678888887654 33 2232333346777766
No 33
>PRK03719 ecotin; Provisional
Probab=20.59 E-value=1.4e+02 Score=24.22 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=32.8
Q ss_pred hhhhhcCCCceEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCccee
Q 031056 38 VQLQVAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTF 100 (166)
Q Consensus 38 ~~~~~~~~~c~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF 100 (166)
+++....+.-.|+|.+.=|-... +|-|-.- |. |+ .....|+.++++.|+=..++..
T Consensus 52 i~Lp~~~~e~~~kVEliiGk~~~--vDCN~~~-lg---G~-leektl~GwGY~YY~v~~~~~~ 107 (166)
T PRK03719 52 ITLPPQEDESDYKVELLIGQTLE--VDCNQHR-LG---GE-LEEKTLEGWGYDYYVVDKVSGP 107 (166)
T ss_pred EEcCCCCChhHeeEEEecCCEEE--eccCccE-ec---ce-eEEEeecCCCceeEEEeccCCc
Confidence 33333445567999888774433 4555443 44 32 3456788888888855554443
No 34
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.52 E-value=2.4e+02 Score=23.83 Aligned_cols=69 Identities=12% Similarity=0.190 Sum_probs=41.0
Q ss_pred CCCceEEEEEEcCCCCCCcCceeEEEEEEeCCCCeEEEEcCCCcCCCcccCCCcceeEeecCCCC--CeEEEEEEEcCCC
Q 031056 44 AKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTY--DICYQYLLRSGSD 121 (166)
Q Consensus 44 ~~~c~Y~V~V~TG~~~~AGTda~V~I~L~g~~G~~s~~~~Ld~~~~~~FErGsvDtF~v~~~~lG--~Ic~l~L~hdG~d 121 (166)
.+.+.|.-.|.|| =+=+|...+.+.+|+..... ... .-|.|.+.++..| ..|. ++.-
T Consensus 44 ~~~~~~~fqV~tG------G~fDVD~~I~aPdgkvI~~~--~kk--------~~~~~~f~ae~~G~Y~fCF-----sN~f 102 (209)
T KOG1693|consen 44 DDTTSFEFQVQTG------GHFDVDYDIEAPDGKVIYSE--KKK--------RYDSFLFKAEGKGEYTFCF-----SNEF 102 (209)
T ss_pred CceEEEEEEEEeC------CceeeEEEEECCCCCEEeec--ccc--------ccccEEEEEecceEEEEEe-----cCcc
Confidence 4446677777777 34579999999999754322 222 3356666554444 3442 2223
Q ss_pred CceeeEEEEEeC
Q 031056 122 GWKPESVKICGQ 133 (166)
Q Consensus 122 ~W~~e~V~V~~~ 133 (166)
+=++++|+..+-
T Consensus 103 stf~~Kiv~~~~ 114 (209)
T KOG1693|consen 103 STFSHKIVYMDF 114 (209)
T ss_pred ccccceEeeehh
Confidence 777777776543
Done!