BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031058
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P59048|PDRG1_MOUSE p53 and DNA damage-regulated protein 1 OS=Mus musculus GN=Pdrg1
PE=2 SV=1
Length = 133
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 46/154 (29%)
Query: 12 LIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGP 71
L+E+E AE +L + Q+V+ D RN NRE L AL+K +S E +M
Sbjct: 13 LVEVEELAEAVLSDKRQIVDLDTKRNQNREGLRALQKD--------LSVSEDVM------ 58
Query: 72 GTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQS 131
VC GN +F K+P +++ DQ LD E ++L+S
Sbjct: 59 --------VC--FGN---------------MFIKMPHPKTKEMIQKDQEHLDKEIERLRS 93
Query: 132 YVKEK--SLFISE-----KGALADKISPGVLRSL 158
+K K LF ++ KG + +SP +++L
Sbjct: 94 QLKVKVNRLFEAQGKPELKGFNLNPLSPDEVKAL 127
>sp|Q642A0|PDRG1_RAT p53 and DNA damage-regulated protein 1 OS=Rattus norvegicus
GN=Pdrg1 PE=2 SV=2
Length = 133
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 41/126 (32%)
Query: 12 LIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGP 71
L+E+E AE +L + Q+V+ D RN NRE L AL+K
Sbjct: 13 LVEVEELAEAVLSDKRQIVDLDTKRNQNREGLRALQK----------------------- 49
Query: 72 GTRPLVKEVCTTC-GNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQ 130
P V E C GN +F K+P +++ DQ LD E ++L+
Sbjct: 50 --DPSVSEDVMVCFGN---------------MFIKMPHLKTKEMIQKDQEHLDKEIERLR 92
Query: 131 SYVKEK 136
S +K K
Sbjct: 93 SQLKVK 98
>sp|A8GYX0|RPOC_SHEPA DNA-directed RNA polymerase subunit beta' OS=Shewanella pealeana
(strain ATCC 700345 / ANG-SQ1) GN=rpoC PE=3 SV=1
Length = 1404
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 41 EALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGT 100
E +T R+ T S I E + T G RP+++ V G+ +M PGT
Sbjct: 1042 EGVTMTRQTDELTGLSSIVVLEVGQRPTAGKEMRPMIRLVAADGGD--------LMIPGT 1093
Query: 101 DVFAKIPFHAAHTILETD 118
+V A+ F H I+ D
Sbjct: 1094 EVPAQY-FLPGHAIVNLD 1110
>sp|Q9ZFC5|DNAJ_METSS Chaperone protein DnaJ OS=Methylovorus sp. (strain SS1 / DSM 11726)
GN=dnaJ PE=3 SV=1
Length = 371
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 45 ALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEV-CTTCGNH 87
+L AR T+T + P S + G G RP + V CTTCG H
Sbjct: 125 SLEDAARRTETKIRIPVMSECETCHGSGARPGTQPVTCTTCGGH 168
>sp|Q5RFA9|PDRG1_PONAB p53 and DNA damage-regulated protein 1 OS=Pongo abelii GN=PDRG1
PE=2 SV=1
Length = 133
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 39/111 (35%)
Query: 26 RHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCG 85
+ Q+V+ D RN NRE L AL+K +S E +M VC G
Sbjct: 27 KRQIVDLDTKRNQNREGLRALQKD--------LSLSEDVM--------------VC--FG 62
Query: 86 NHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEK 136
N +F K+P ++E DQ LD E +KL+ +K K
Sbjct: 63 N---------------MFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVK 98
>sp|Q9NUG6|PDRG1_HUMAN p53 and DNA damage-regulated protein 1 OS=Homo sapiens GN=PDRG1
PE=2 SV=2
Length = 133
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 39/111 (35%)
Query: 26 RHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCG 85
+ Q+V+ D RN NRE L AL+K +S E +M VC G
Sbjct: 27 KRQIVDLDTKRNQNREGLRALQKD--------LSLSEDVM--------------VC--FG 62
Query: 86 NHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEK 136
N +F K+P ++E DQ LD E +KL+ +K K
Sbjct: 63 N---------------MFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVK 98
>sp|Q1H3B9|DNAJ_METFK Chaperone protein DnaJ OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=dnaJ PE=3 SV=1
Length = 373
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 45 ALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEV-CTTCGNH 87
+L + AR T+T + P + + G G RP + V C+TCG H
Sbjct: 126 SLEEAARGTETKIRIPVMAECETCHGSGARPGTQPVTCSTCGGH 169
>sp|Q0C085|RS6_HYPNA 30S ribosomal protein S6 OS=Hyphomonas neptunium (strain ATCC
15444) GN=rpsF PE=3 SV=1
Length = 112
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 120 TRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSLVTLTDKSK 166
TR D +++S+++E + F+ EKGA K LRSL K +
Sbjct: 10 TRPDISPAQVESFIEEMTTFLKEKGATVGKTEYWGLRSLAYPIKKQR 56
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,021,456
Number of Sequences: 539616
Number of extensions: 2332481
Number of successful extensions: 5848
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5838
Number of HSP's gapped (non-prelim): 15
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)