Query 031058
Match_columns 166
No_of_seqs 99 out of 110
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zqm_A Prefoldin beta subunit 99.3 2.3E-10 7.8E-15 83.8 14.2 107 6-152 6-113 (117)
2 1fxk_A Prefoldin; archaeal pro 99.2 4.8E-10 1.6E-14 81.0 14.6 101 11-151 6-107 (107)
3 2zdi_C Prefoldin subunit alpha 98.1 4.7E-05 1.6E-09 58.6 11.3 125 1-143 7-131 (151)
4 1fxk_C Protein (prefoldin); ar 98.0 0.00014 4.9E-09 54.3 13.2 120 4-143 2-121 (133)
5 1l8d_A DNA double-strand break 96.5 0.035 1.2E-06 40.0 10.4 90 16-148 13-102 (112)
6 3aei_A Prefoldin beta subunit 93.8 0.37 1.3E-05 35.1 8.0 54 88-143 41-94 (99)
7 2l5g_B Putative uncharacterize 81.4 4.1 0.00014 25.9 5.3 34 115-148 7-40 (42)
8 1ik9_A DNA repair protein XRCC 69.5 10 0.00036 30.7 6.2 34 118-151 147-181 (213)
9 1gd2_E Transcription factor PA 68.4 20 0.00069 24.5 6.6 18 32-49 9-26 (70)
10 3nmd_A CGMP dependent protein 66.1 21 0.00072 24.9 6.3 35 118-152 34-68 (72)
11 1q08_A Zn(II)-responsive regul 62.8 21 0.00072 24.1 5.9 57 107-163 36-93 (99)
12 2p57_A GTPase-activating prote 58.4 12 0.00041 29.0 4.4 53 33-115 18-70 (144)
13 3lrt_A Ribose-phosphate pyroph 55.7 2.2 7.7E-05 35.9 -0.2 44 65-109 1-44 (286)
14 1ses_A Seryl-tRNA synthetase; 50.7 52 0.0018 28.8 7.7 23 27-49 28-50 (421)
15 3s5j_B Ribose-phosphate pyroph 50.5 5.7 0.0002 34.2 1.5 43 65-108 4-46 (326)
16 1hjb_A Ccaat/enhancer binding 49.6 34 0.0012 24.3 5.2 35 109-143 42-76 (87)
17 3dwd_A ADP-ribosylation factor 49.2 21 0.00072 27.8 4.4 49 37-115 23-71 (147)
18 1jnm_A Proto-oncogene C-JUN; B 48.1 53 0.0018 21.2 7.4 33 111-143 23-55 (62)
19 2dfs_A Myosin-5A; myosin-V, in 47.0 2E+02 0.0069 28.3 11.9 44 6-49 963-1006(1080)
20 1u9y_A RPPK;, ribose-phosphate 45.9 4.5 0.00015 33.6 0.1 41 67-108 3-43 (284)
21 1x4t_A Hypothetical protein LO 45.6 27 0.00094 25.3 4.3 35 118-152 53-88 (92)
22 3o47_A ADP-ribosylation factor 44.7 23 0.00077 29.2 4.2 50 36-115 21-70 (329)
23 2zqm_A Prefoldin beta subunit 44.3 57 0.002 22.6 5.8 49 93-143 62-110 (117)
24 2iqj_A Stromal membrane-associ 44.1 26 0.0009 26.4 4.2 49 37-115 12-60 (134)
25 3lju_X ARF-GAP with dual PH do 43.7 23 0.00078 30.5 4.2 53 33-115 15-67 (386)
26 1go4_E MAD1 (mitotic arrest de 43.2 94 0.0032 22.7 9.2 80 20-134 12-92 (100)
27 3htk_A Structural maintenance 42.9 61 0.0021 20.4 6.1 37 107-143 2-38 (60)
28 3dah_A Ribose-phosphate pyroph 41.5 7.2 0.00025 33.4 0.7 43 65-108 8-50 (319)
29 1dku_A Protein (phosphoribosyl 41.4 7.1 0.00024 33.0 0.7 43 65-108 10-52 (317)
30 3sub_A ADP-ribosylation factor 41.4 31 0.001 27.3 4.3 33 79-115 23-55 (163)
31 1fxk_A Prefoldin; archaeal pro 40.9 56 0.0019 22.4 5.3 49 93-143 57-105 (107)
32 2crr_A Stromal membrane-associ 40.6 33 0.0011 26.1 4.3 49 37-115 14-62 (141)
33 2p22_C Protein SRN2; endosome, 39.8 70 0.0024 25.5 6.3 41 120-160 93-134 (192)
34 1t2k_D Cyclic-AMP-dependent tr 38.4 77 0.0026 20.3 8.0 32 112-143 24-55 (61)
35 1ef4_A Subunit N, DNA-directed 38.1 8.5 0.00029 25.6 0.5 9 79-87 4-12 (55)
36 1zxa_A CGMP-dependent protein 37.9 49 0.0017 22.6 4.3 40 112-151 13-52 (67)
37 3nmd_A CGMP dependent protein 36.8 57 0.002 22.6 4.6 34 113-146 22-55 (72)
38 3viq_B Mating-type switching p 35.8 37 0.0013 24.2 3.6 25 119-143 3-27 (85)
39 2xdj_A Uncharacterized protein 35.8 1E+02 0.0035 21.5 5.9 33 111-143 21-53 (83)
40 3a7o_A Autophagy protein 16; c 35.8 52 0.0018 23.1 4.2 27 113-139 21-47 (75)
41 2olm_A Nucleoporin-like protei 35.7 44 0.0015 25.4 4.3 33 79-115 26-58 (140)
42 4ayb_N DNA-directed RNA polyme 34.7 10 0.00035 26.1 0.5 9 79-87 5-13 (66)
43 1twf_J DNA-directed RNA polyme 34.4 11 0.00037 26.2 0.6 12 77-88 3-14 (70)
44 3he5_B Synzip2; heterodimeric 33.4 72 0.0025 20.5 4.3 27 114-140 21-47 (52)
45 3e98_A GAF domain of unknown f 33.0 65 0.0022 26.3 5.2 52 107-158 62-113 (252)
46 1weo_A Cellulose synthase, cat 33.0 26 0.00088 25.6 2.4 22 78-105 16-37 (93)
47 3gp4_A Transcriptional regulat 32.9 1.4E+02 0.005 21.9 6.7 37 107-143 78-114 (142)
48 2l5g_B Putative uncharacterize 32.3 95 0.0033 19.5 4.9 28 111-138 10-37 (42)
49 2lw1_A ABC transporter ATP-bin 31.9 65 0.0022 22.1 4.3 24 118-141 23-46 (89)
50 2g0c_A ATP-dependent RNA helic 31.3 14 0.00049 24.1 0.8 45 71-117 13-58 (76)
51 3gpv_A Transcriptional regulat 31.2 1E+02 0.0035 22.7 5.7 37 107-143 92-128 (148)
52 1l8d_A DNA double-strand break 31.0 1.3E+02 0.0045 20.8 6.2 40 111-150 4-43 (112)
53 2wt7_B Transcription factor MA 30.6 1.5E+02 0.005 21.2 6.3 40 110-149 48-87 (90)
54 3v26_X ORF3, ORF95, probable s 30.6 55 0.0019 23.0 3.8 43 93-135 52-94 (101)
55 1nkp_B MAX protein, MYC proto- 30.5 83 0.0028 21.1 4.6 29 115-143 52-80 (83)
56 1r8d_A Transcription activator 30.5 35 0.0012 23.8 2.8 28 111-138 76-103 (109)
57 2ibl_A Fibritin; foldon, trime 29.9 1.2E+02 0.0041 23.2 5.8 88 68-157 7-105 (130)
58 2wt7_A Proto-oncogene protein 29.6 1.2E+02 0.004 19.7 8.2 31 113-143 26-56 (63)
59 2ji4_A Phosphoribosyl pyrophos 29.4 24 0.00081 30.6 2.0 42 65-107 30-74 (379)
60 2zet_C Melanophilin; complex, 29.2 15 0.00051 28.4 0.6 20 78-97 93-112 (153)
61 2crw_A ARF GAP 3, ADP-ribosyla 28.9 53 0.0018 25.4 3.8 33 79-115 30-62 (149)
62 1t3j_A Mitofusin 1; coiled coi 28.9 1.4E+02 0.0049 21.5 5.9 32 100-131 35-68 (96)
63 1r8e_A Multidrug-efflux transp 27.9 1.2E+02 0.0041 23.6 5.8 36 108-143 77-112 (278)
64 1d0q_A DNA primase; zinc-bindi 27.6 39 0.0013 23.7 2.6 21 80-100 39-65 (103)
65 1q06_A Transcriptional regulat 26.8 1.4E+02 0.0048 21.6 5.6 33 108-140 77-109 (135)
66 1jw2_A Hemolysin expression mo 25.9 78 0.0027 22.0 3.8 29 128-156 39-69 (72)
67 3cvf_A Homer-3, homer protein 25.8 1.4E+02 0.0047 20.9 5.1 30 118-147 42-72 (79)
68 3hh0_A Transcriptional regulat 25.8 1.6E+02 0.0053 21.8 5.8 37 107-143 77-113 (146)
69 3rrk_A V-type ATPase 116 kDa s 25.4 1.6E+02 0.0056 24.1 6.4 39 110-148 226-265 (357)
70 1wle_A Seryl-tRNA synthetase; 25.2 1E+02 0.0034 27.9 5.4 30 114-143 120-149 (501)
71 1xn7_A Hypothetical protein YH 24.7 40 0.0014 22.9 2.1 18 80-97 60-77 (78)
72 3cve_A Homer protein homolog 1 24.5 1.6E+02 0.0053 20.3 5.1 30 118-147 36-66 (72)
73 2wuj_A Septum site-determining 24.3 97 0.0033 19.9 3.8 31 108-138 25-55 (57)
74 4htm_A CREB-regulated transcri 24.1 36 0.0012 20.6 1.6 24 40-70 10-33 (34)
75 2ke4_A CDC42-interacting prote 24.0 1.1E+02 0.0037 21.9 4.4 31 115-145 60-90 (98)
76 2pnv_A Small conductance calci 23.7 1.2E+02 0.004 19.0 4.0 27 115-141 14-40 (43)
77 2y7c_A Type-1 restriction enzy 23.6 2.3E+02 0.008 23.0 7.0 49 106-154 372-422 (464)
78 2zdi_C Prefoldin subunit alpha 23.5 1.4E+02 0.0049 22.0 5.2 60 89-149 58-130 (151)
79 1hjb_A Ccaat/enhancer binding 23.3 2E+02 0.0067 20.2 5.6 44 113-156 39-82 (87)
80 2dq0_A Seryl-tRNA synthetase; 23.3 2.2E+02 0.0077 25.1 7.2 66 27-150 31-103 (455)
81 1nlw_A MAD protein, MAX dimeri 22.5 1.5E+02 0.0052 20.1 4.8 35 109-143 43-80 (80)
82 3t97_C Nuclear pore glycoprote 22.0 1.3E+02 0.0046 20.0 4.3 34 110-143 19-52 (64)
83 1fxk_C Protein (prefoldin); ar 22.0 1.8E+02 0.0061 20.7 5.4 104 14-147 2-118 (133)
84 2aze_A Transcription factor DP 21.3 1.5E+02 0.005 23.3 5.0 27 117-143 5-31 (155)
85 2o4w_A Lysozyme; protein foldi 21.1 98 0.0034 23.6 4.0 52 105-156 46-101 (171)
86 2b0o_E UPLC1; arfgap, structur 21.1 1.1E+02 0.0037 24.4 4.4 33 79-115 43-75 (301)
87 2yy0_A C-MYC-binding protein; 21.0 1.7E+02 0.0059 18.6 4.8 34 107-140 16-49 (53)
88 1swy_A Lysozyme; RB+ binding s 20.9 1E+02 0.0035 23.1 4.0 52 105-156 57-112 (164)
89 3vkg_A Dynein heavy chain, cyt 20.9 9.2E+02 0.032 27.1 13.3 43 106-148 2010-2052(3245)
90 3qne_A Seryl-tRNA synthetase, 20.8 3.1E+02 0.011 24.7 7.7 66 27-150 33-105 (485)
91 2vz4_A Tipal, HTH-type transcr 20.4 59 0.002 22.6 2.4 30 111-140 75-104 (108)
92 1lrz_A FEMA, factor essential 20.4 2.9E+02 0.0099 23.4 7.2 32 102-133 239-270 (426)
93 3mq9_A Bone marrow stromal ant 20.1 2E+02 0.0068 24.4 6.1 30 114-143 433-462 (471)
No 1
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.26 E-value=2.3e-10 Score=83.77 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccC
Q 031058 6 KQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCG 85 (166)
Q Consensus 6 ~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g 85 (166)
..+++.+.++..+-..+-...+++-.+....+.+..|+..|...
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l------------------------------------ 49 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESL------------------------------------ 49 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------------------------------
Confidence 44556666666666666666777777788888888888888864
Q ss_pred CCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcCh
Q 031058 86 NHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKISP 152 (166)
Q Consensus 86 ~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg~ 152 (166)
+++.+||+.+ |++||+.|.+.|.+.|++..+.++.+|+.|...++.+...|.++ ..||++|++
T Consensus 50 --~~d~~vy~~i--G~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 50 --PDDAVVYKTV--GTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp --CTTCCEEEEE--TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred --CCCcHhHHHh--hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6778899999 88999999999999999999999999999999999999999999 999999986
No 2
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.23 E-value=4.8e-10 Score=81.02 Aligned_cols=101 Identities=10% Similarity=0.140 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCC
Q 031058 11 NLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSN 90 (166)
Q Consensus 11 ~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~d 90 (166)
.+.+.-.+-.++-...+++=.+....+.+..|+..|... +++
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l--------------------------------------~~d 47 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA--------------------------------------ADD 47 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------------------------------------CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------------------------------CCC
Confidence 333333333444444445555667777777888888764 678
Q ss_pred CceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcC
Q 031058 91 EHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKIS 151 (166)
Q Consensus 91 ekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg 151 (166)
.++|..+ |++||+.|.+.|.+.|++..+.++.+|+.|...++.+...|.++ ..||++|+
T Consensus 48 ~~vy~~i--G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~~ 107 (107)
T 1fxk_A 48 AEVYKSS--GNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107 (107)
T ss_dssp CCEEEEE--TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHH--hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8899999 88999999999999999999999999999999999999999999 99999995
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=98.07 E-value=4.7e-05 Score=58.55 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchh
Q 031058 1 MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEV 80 (166)
Q Consensus 1 m~~~~~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~ 80 (166)
|.+.++++.+.+..++...+.+...++++-.-..+-+.+.+|+..|..... .+ ..+|..++++.
T Consensus 7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-------~~-~~ilvplg~~~-------- 70 (151)
T 2zdi_C 7 NNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-------EK-PEILVPIGAGS-------- 70 (151)
T ss_dssp STTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------SS-CEEEEECSSSC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CC-ceEEEEcCCCe--------
Confidence 356677888888888888888888777775557777888888888876410 11 12443333322
Q ss_pred ccccCCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 81 CTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 81 c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
+-=|.-.+.++|.+-+ |.+.||..+.++|.++|++..+.++..++.++..+..+...+..+
T Consensus 71 -yv~g~i~~~~~V~v~l-G~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 71 -FLKGVIVDKNNAIVSV-GSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp -EEEEECSCTTEEEEEE-ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred -EEEEEECCCCEEEEEe-CCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1113345667799999 447999999999999999999999999999999999999888776
No 4
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=98.05 E-value=0.00014 Score=54.33 Aligned_cols=120 Identities=10% Similarity=0.077 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccc
Q 031058 4 TMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTT 83 (166)
Q Consensus 4 ~~~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~ 83 (166)
.++++++.+..++...+.+...++++ ....+..++|+.+|..-... .+. .+|-.++++ .+-
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l---~~~i~e~~~~~e~l~~l~~~------~~~-~~lvplg~~---------~yv 62 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAV---RATISELEILEKTLSDIQGK------DGS-ETLVPVGAG---------SFI 62 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTC------TTC-EEEEEEETT---------EEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccC------CCC-eEEEEcCCC---------cEE
Confidence 35677777777777777776666655 45556666667666654210 010 122111111 122
Q ss_pred cCCCCCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 84 CGNHDSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 84 ~g~~d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
=|.-.+.++|.+-+ |.+.||..|.++|.++|++..+.++..++.++..+..+..++..+
T Consensus 63 ~a~i~~~~~V~v~l-G~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~ 121 (133)
T 1fxk_C 63 KAELKDTSEVIMSV-GAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKL 121 (133)
T ss_dssp EEECCSTTEEEEEE-ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCEEEEEc-CCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345667799999 336999999999999999999999999999999999998888777
No 5
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=96.53 E-value=0.035 Score=39.97 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeE
Q 031058 16 ENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWM 95 (166)
Q Consensus 16 E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi 95 (166)
+.+.+.+-..+..+.++...-.....++..|.+ ...+|++||..-..
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~----------------------------~g~~CPvCgs~l~~----- 59 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKK----------------------------AKGKCPVCGRELTD----- 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------------------------CSEECTTTCCEECH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------CCCCCCCCCCcCCH-----
Confidence 333444444455556665555555556655533 13579999953221
Q ss_pred EecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 031058 96 MFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALAD 148 (166)
Q Consensus 96 ~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~ 148 (166)
-.......-++..+..+..+|..|+..+......+.+|..-|.
T Consensus 60 ----------~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 60 ----------EHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123445667778888888888888888888888888855555
No 6
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=93.78 E-value=0.37 Score=35.12 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=49.2
Q ss_pred CCCCceeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 88 DSNEHTWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 88 d~dekVWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
..+.+.+-.| .|.+|.+..+.|.+-++.---....||++|+..-|+....|+-|
T Consensus 41 k~er~~yraf--~dllveitkdeaiehier~rl~ykreie~l~~~ekeime~ls~l 94 (99)
T 3aei_A 41 KSERRIYRAF--SDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEIMEELSKL 94 (99)
T ss_dssp CSCCCEEEEE--TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566788889 99999999999999999999999999999999999998888776
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=81.37 E-value=4.1 Score=25.92 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 031058 115 LETDQTRLDFEAKKLQSYVKEKSLFISEKGALAD 148 (166)
Q Consensus 115 LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~ 148 (166)
|-+.+..+|.||.+.++.+-+...++.+|+..+.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567888999999999999999999999955443
No 8
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=69.52 E-value=10 Score=30.74 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcC
Q 031058 118 DQTRLDFEAKKLQSYVKEKSLFISEK-GALADKIS 151 (166)
Q Consensus 118 DQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg 151 (166)
..+.++.+++++.+++++.++.=.++ ..||.||-
T Consensus 147 e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~ 181 (213)
T 1ik9_A 147 ENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFI 181 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888899999999999999999 99999994
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.45 E-value=20 Score=24.51 Aligned_cols=18 Identities=44% Similarity=0.484 Sum_probs=15.6
Q ss_pred hhhhhhhhHHHHHHHHhh
Q 031058 32 SDIVRNGNREALTALRKR 49 (166)
Q Consensus 32 lDk~Rn~nREAl~aL~k~ 49 (166)
..+++-+||.|-||+|.+
T Consensus 9 ~~kR~~qNR~AQRafReR 26 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKR 26 (70)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 368999999999999875
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.09 E-value=21 Score=24.85 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcCh
Q 031058 118 DQTRLDFEAKKLQSYVKEKSLFISEKGALADKISP 152 (166)
Q Consensus 118 DQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~Kfg~ 152 (166)
+..+-|..|..|...|.++...+.+|..-++||=.
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677889999999999999999999888888843
No 11
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=62.84 E-value=21 Score=24.14 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcChhhhhhhhhccc
Q 031058 107 PFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKISPGVLRSLVTLTD 163 (166)
Q Consensus 107 P~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg~~v~kslv~l~~ 163 (166)
+.....++|+...+.++.+|..|+.-+......+... +.-.+.-.-.++.+|..-.+
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~~~~~~~C~i~~~l~~~~~ 93 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYCSILEALEQGAS 93 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSBGGGCHHHHHHHHCSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHhccCCc
Confidence 3457888999999999999999988777766666544 21111112345666654433
No 12
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=58.36 E-value=12 Score=28.97 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=35.1
Q ss_pred hhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeechhHHH
Q 031058 33 DIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAH 112 (166)
Q Consensus 33 Dk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~ 112 (166)
++.+...++.++.|++.. -..+|+-||.. ++.|..+.=| +||.+.-...+
T Consensus 18 ~~~k~~~~~~l~~L~~~p--------------------------~N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiH 67 (144)
T 2p57_A 18 EPNKTEIQTLFKRLRAVP--------------------------TNKACFDCGAK---NPSWASITYG-VFLCIDCSGVH 67 (144)
T ss_dssp CCCHHHHHHHHHHHHHSG--------------------------GGGBCTTTCCB---SCCEEEGGGT-EEECHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCC--------------------------CCCcCCCCcCC---CCCeEEeccC-EEEhhhchHHH
Confidence 445556677788887651 23589999965 4789885212 88877666666
Q ss_pred HHH
Q 031058 113 TIL 115 (166)
Q Consensus 113 e~L 115 (166)
.-|
T Consensus 68 R~L 70 (144)
T 2p57_A 68 RSL 70 (144)
T ss_dssp HHH
T ss_pred cCC
Confidence 555
No 13
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=55.68 E-value=2.2 Score=35.87 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=34.6
Q ss_pred hccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeechh
Q 031058 65 MKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFH 109 (166)
Q Consensus 65 ~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~~ 109 (166)
|+=+.|+++.+|.++||...|-.- ..-.|..||.|+++++++..
T Consensus 1 ~~i~~g~~~~~la~~ia~~lg~~l-~~~~~~~F~dGE~~v~i~e~ 44 (286)
T 3lrt_A 1 MKIIALRSSLKLAARIAEELKTEP-VMPDERRFPDGELYLRYDED 44 (286)
T ss_dssp CEEEECGGGHHHHHHHHHHTTSCE-ECCEEEECTTSCEEEECCSC
T ss_pred CEEEECCCCHHHHHHHHHHhCCCe-eeeEEEECCCCCEEEEEcCC
Confidence 556789999999999999877433 34478889999999988754
No 14
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=50.67 E-value=52 Score=28.81 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=18.9
Q ss_pred hHHHHhhhhhhhhHHHHHHHHhh
Q 031058 27 HQLVESDIVRNGNREALTALRKR 49 (166)
Q Consensus 27 ~qlv~lDk~Rn~nREAl~aL~k~ 49 (166)
.+++++|.+|......+..||..
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~ 50 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTE 50 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999998888777777654
No 15
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=50.54 E-value=5.7 Score=34.15 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=33.8
Q ss_pred hccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeech
Q 031058 65 MKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPF 108 (166)
Q Consensus 65 ~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~ 108 (166)
|+=+.|+++.+|.++||...|-. -..-.|-.||.|+++++++.
T Consensus 4 ~~if~g~~~~~La~~ia~~lg~~-l~~~~~~~F~dGE~~v~i~e 46 (326)
T 3s5j_B 4 IKIFSGSSHQDLSQKIADRLGLE-LGKVVTKKFSNQETCVEIGE 46 (326)
T ss_dssp EEEEECSSCCHHHHHHHHHTTCC-CCCEEEEECTTSCEEEEECS
T ss_pred eEEEECCCCHHHHHHHHHHhCCc-eeeeEEeECCCCCEEEEECC
Confidence 45568999999999999988843 33447888999999888753
No 16
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.56 E-value=34 Score=24.27 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 109 HAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 109 ~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
....+.|+++-..|..+|..|+.++......|..+
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44556677777778888877777776666655555
No 17
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=49.15 E-value=21 Score=27.78 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeechhHHHHHH
Q 031058 37 NGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTIL 115 (166)
Q Consensus 37 n~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~L 115 (166)
..+|++|+.|++.. -..+|+-||..+ +.|..+.=| +||.+.-...|.-|
T Consensus 23 ~~~~~~l~~L~~~p--------------------------~N~~CaDCga~~---P~WaS~nlG-vfiC~~CSgiHR~L 71 (147)
T 3dwd_A 23 PRTRKVLKEVRVQD--------------------------ENNVCFECGAFN---PQWVSVTYG-IWICLECSGRHRGL 71 (147)
T ss_dssp HHHHHHHHHHHTST--------------------------TTTBCTTTCCBS---CCEEETTTT-EEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc--------------------------CCCccCCCCCCC---CCeEEeccc-EeEhHhhChHHhcC
Confidence 35788999998751 124899999754 789885212 89988777777655
No 18
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.10 E-value=53 Score=21.20 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 111 AHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 111 A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
-..-|+...+.+..+-..|++++.....++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777766666666666
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=46.98 E-value=2e+02 Score=28.29 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhh
Q 031058 6 KQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNREALTALRKR 49 (166)
Q Consensus 6 ~~~~~~l~e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~ 49 (166)
..+.+.+.++|.+-.+.-..++++-.|+..=...|+.+..+.+.
T Consensus 963 ~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444466666666666667777777777777777777776654
No 20
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=45.87 E-value=4.5 Score=33.58 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=31.0
Q ss_pred cCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeech
Q 031058 67 DTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPF 108 (166)
Q Consensus 67 ~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~ 108 (166)
=+.|+++.+|.++||...|-.- ..-.|-.||.|+++++++.
T Consensus 3 i~~~~~~~~la~~ia~~l~~~l-~~~~~~~F~dGE~~v~i~~ 43 (284)
T 1u9y_A 3 VVSGSQSQNLAFKVAKLLNTKL-TRVEYKRFPDNEIYVRIVD 43 (284)
T ss_dssp EEECTTCHHHHHHHHHHTTCCE-ECEEEEECTTCCEEEEECS
T ss_pred EEECCCCHHHHHHHHHHhCCee-eeeEEEECCCCCEEEEeCC
Confidence 4578999999999999877432 3346777888888888763
No 21
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=45.58 E-value=27 Score=25.35 Aligned_cols=35 Identities=26% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcCh
Q 031058 118 DQTRLDFEAKKLQSYVKEKSLFISEK-GALADKISP 152 (166)
Q Consensus 118 DQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg~ 152 (166)
....|+.|||+|=.+-.-...++.+| |.-|.+.|.
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~~~~~ 88 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVSG 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCC
Confidence 56689999999999999999999999 888988764
No 22
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=44.72 E-value=23 Score=29.21 Aligned_cols=50 Identities=20% Similarity=0.433 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeechhHHHHHH
Q 031058 36 RNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTIL 115 (166)
Q Consensus 36 Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~L 115 (166)
-..+|..|+.|++.. -..+|+.||..+ +.|..+.=| +|+.+.-...|.-|
T Consensus 21 ~~~~~~~~~~~~~~~--------------------------~n~~c~dc~~~~---~~~~~~~~~-~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 21 SPRTRKVLKEVRVQD--------------------------ENNVCFECGAFN---PQWVSVTYG-IWICLECSGRHRGL 70 (329)
T ss_dssp --CHHHHHHHHHHST--------------------------TTTBCTTTCCBS---CCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCC--------------------------CCCcCCCCCCCC---CCeEEecCC-EEEChhhhhhhccc
Confidence 356788888888751 134899999765 479775213 99998877777665
No 23
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.29 E-value=57 Score=22.65 Aligned_cols=49 Identities=22% Similarity=0.129 Sum_probs=39.5
Q ss_pred eeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 93 TWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 93 VWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
+.+.. .---+.--.++-++.|+...+.++..++.++..+++.-..|.++
T Consensus 62 vfv~~--~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 62 LIVKT--TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp EEEEE--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 22334455678899999999999999999999999999999887
No 24
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=44.09 E-value=26 Score=26.45 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeechhHHHHHH
Q 031058 37 NGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTIL 115 (166)
Q Consensus 37 n~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~L 115 (166)
..+..+|+.|++.. -..+|+-||..+ +.|..+.=| +||.+.-...|.-|
T Consensus 12 e~~~~~l~~L~~~p--------------------------~N~~CaDCg~~~---P~WaS~n~G-vfiC~~CsgiHR~l 60 (134)
T 2iqj_A 12 DRYQAVLANLLLEE--------------------------DNKFCADCQSKG---PRWASWNIG-VFICIRCAGIHRNL 60 (134)
T ss_dssp -CCHHHHHHHTTSG--------------------------GGGBCTTTCCBS---CCEEETTTT-EEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc--------------------------CCCcCCcCcCCC---CCeEEecCC-EEEhHhhhHHHhcC
Confidence 45667888887752 235899999764 789885213 89988877777666
No 25
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=43.69 E-value=23 Score=30.48 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=38.1
Q ss_pred hhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeechhHHH
Q 031058 33 DIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAH 112 (166)
Q Consensus 33 Dk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~ 112 (166)
++.-..|+.+|+.|++.. -..+|+-||.. .+.|..+.=| +||.+.-...|
T Consensus 15 ~~q~~~~~~~l~~l~~~~--------------------------~N~~C~dC~~~---~p~w~s~~~g-~~~C~~Csg~h 64 (386)
T 3lju_X 15 YFQGKERRRAVLELLQRP--------------------------GNARCADCGAP---DPDWASYTLG-VFICLSCSGIH 64 (386)
T ss_dssp HHHHHHHHHHHHHHTTSG--------------------------GGSBCTTTCCB---SCCEEETTTT-EEECHHHHHHH
T ss_pred hhhhhHHHHHHHHHhcCc--------------------------CCCcCccCCCC---CCCeEEeccc-EEEhhhhchHh
Confidence 444556888999988752 13489999965 5789985213 99998888877
Q ss_pred HHH
Q 031058 113 TIL 115 (166)
Q Consensus 113 e~L 115 (166)
.-|
T Consensus 65 r~l 67 (386)
T 3lju_X 65 RNI 67 (386)
T ss_dssp HTC
T ss_pred hCC
Confidence 766
No 26
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.17 E-value=94 Score=22.65 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhcc-ccCCCCCCCceeEEec
Q 031058 20 EHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCT-TCGNHDSNEHTWMMFP 98 (166)
Q Consensus 20 e~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~-~~g~~d~dekVWi~~~ 98 (166)
|.+-..|.+|=.|-+-|+.-|+=...|.-.- -+. -=|+.|++. +-|.=
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L-----------------------------e~~~l~Gd~~~~~-TKVlH- 60 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL-----------------------------ERRALQGDYDQSR-TKVLH- 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHSSCCSCCCTTT-EEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHhhccccCCcc-Ceeee-
Confidence 4666677777777777777777766664320 011 114555533 33322
Q ss_pred CCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 031058 99 GTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVK 134 (166)
Q Consensus 99 gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK 134 (166)
|..=|...|.+-.+.+++++..||++||..++
T Consensus 61 ----~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 61 ----MSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp ----ESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999999999998664
No 27
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.90 E-value=61 Score=20.37 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 107 PFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 107 P~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
|+..+..-++.+...+...+...++.+......+..+
T Consensus 2 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 38 (60)
T 3htk_A 2 PFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEI 38 (60)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888877777777777777666666554
No 28
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=41.49 E-value=7.2 Score=33.36 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=33.4
Q ss_pred hccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeech
Q 031058 65 MKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPF 108 (166)
Q Consensus 65 ~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~ 108 (166)
|+=+.|+++.+|.++||...|-. -..-.|-.||.|+++++++.
T Consensus 8 ~~i~~g~~~~~La~~ia~~lg~~-l~~~~~~~F~dGE~~v~i~e 50 (319)
T 3dah_A 8 LMVFTGNANPALAQEVVKILGIP-LGKAMVSRFSDGEIQVEIQE 50 (319)
T ss_dssp EEEEECSSCHHHHHHHHHHHTSC-CCCEEEEECTTSCEEEEECS
T ss_pred eEEEECCCCHHHHHHHHHHhCCc-eeeeEEEECCCCCEEEEECC
Confidence 45568999999999999988743 33447788888888888753
No 29
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=41.45 E-value=7.1 Score=32.98 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=33.6
Q ss_pred hccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeech
Q 031058 65 MKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPF 108 (166)
Q Consensus 65 ~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~ 108 (166)
|+=+.|+++.+|.++||...|-.- ..-.|-.||.|+++++++.
T Consensus 10 ~~i~~~~~~~~la~~ia~~lg~~l-~~~~~~~F~dGE~~v~i~e 52 (317)
T 1dku_A 10 LKIFSLNSNPELAKEIADIVGVQL-GKCSVTRFSDGEVQINIEE 52 (317)
T ss_dssp EEEEECSSCHHHHHHHHHHHTCCC-CCEEEEECTTSCEEEEECS
T ss_pred eEEEECCCCHHHHHHHHHHhCCee-EeeEEEECCCCCEEEEecC
Confidence 456789999999999999887433 3447788999998888763
No 30
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=41.37 E-value=31 Score=27.32 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=24.0
Q ss_pred hhccccCCCCCCCceeEEecCCCeeEeechhHHHHHH
Q 031058 79 EVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTIL 115 (166)
Q Consensus 79 ~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~L 115 (166)
.+|+-||.. .+.|..+.=| +||.+.-...|.-|
T Consensus 23 ~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~L 55 (163)
T 3sub_A 23 NKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSL 55 (163)
T ss_dssp GBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHT
T ss_pred CccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCC
Confidence 589999975 4789986212 89987777766655
No 31
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.93 E-value=56 Score=22.36 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=38.5
Q ss_pred eeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 93 TWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 93 VWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
+.+.. .---+.--.+.-.+.|+...+.++..++.++..+++.-..|.++
T Consensus 57 vfv~~--~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 57 ILIRV--AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp EEEEE--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 22334455688899999999999999999999999998888764
No 32
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.59 E-value=33 Score=26.10 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEeechhHHHHHH
Q 031058 37 NGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTIL 115 (166)
Q Consensus 37 n~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~L 115 (166)
..++.+|+.|++.. -..+|+-||.. .+.|..+.=| +||.+.-...|.-|
T Consensus 14 e~~~~~l~~L~~~p--------------------------~N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~L 62 (141)
T 2crr_A 14 EQHQLILSKLLREE--------------------------DNKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNL 62 (141)
T ss_dssp TCHHHHHHHHHHSG--------------------------GGSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc--------------------------cCCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcC
Confidence 35677888888752 23589999965 4689884213 89988777777665
No 33
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=39.76 E-value=70 Score=25.47 Aligned_cols=41 Identities=5% Similarity=-0.005 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH-HhhhhhcChhhhhhhhh
Q 031058 120 TRLDFEAKKLQSYVKEKSLFISEK-GALADKISPGVLRSLVT 160 (166)
Q Consensus 120 e~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kfg~~v~kslv~ 160 (166)
.++...+..++.-......+..++ ..+.+.|+|..|+..+.
T Consensus 93 ~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~ 134 (192)
T 2p22_C 93 DKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLE 134 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 333333333333333444444555 56778999999887653
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.41 E-value=77 Score=20.29 Aligned_cols=32 Identities=22% Similarity=0.047 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 112 HTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 112 ~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
..-|+...+.+..+...|++++.....++..|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666655
No 35
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=38.13 E-value=8.5 Score=25.60 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=6.8
Q ss_pred hhccccCCC
Q 031058 79 EVCTTCGNH 87 (166)
Q Consensus 79 ~~c~~~g~~ 87 (166)
--|||||.-
T Consensus 4 VRCFTCGkv 12 (55)
T 1ef4_A 4 VRCLSCGKP 12 (55)
T ss_dssp SSCSCTTSC
T ss_pred eecCCCCCC
Confidence 369999954
No 36
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.86 E-value=49 Score=22.61 Aligned_cols=40 Identities=18% Similarity=0.008 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcC
Q 031058 112 HTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKIS 151 (166)
Q Consensus 112 ~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~Kfg 151 (166)
.+.+.+.+..=|..|..|+..+..+...+.+|....+||=
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666678888888888888888888877777774
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.78 E-value=57 Score=22.61 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 031058 113 TILETDQTRLDFEAKKLQSYVKEKSLFISEKGAL 146 (166)
Q Consensus 113 e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~L 146 (166)
.-|+.....-+.||.....-+++...+|.|+...
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~e 55 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDEL 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555333
No 38
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=35.81 E-value=37 Score=24.22 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 119 QTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 119 Qe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
+.++.++|..|+++......++.++
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665555555555
No 39
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.78 E-value=1e+02 Score=21.49 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 111 AHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 111 A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
+.--|....+.+..||..||..+.+..+.|..+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334456677899999999999999999999888
No 40
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.76 E-value=52 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 031058 113 TILETDQTRLDFEAKKLQSYVKEKSLF 139 (166)
Q Consensus 113 e~LEkDQe~lD~EI~kLRseLK~Kv~~ 139 (166)
..|..+...-|.||-.|++.++.+...
T Consensus 21 ~~Lr~eL~~Ke~eI~~L~e~i~lk~kd 47 (75)
T 3a7o_A 21 AILQKELKSKEQEIRRLKEVIALKNKN 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444444455555555544444433
No 41
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=35.67 E-value=44 Score=25.36 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=22.4
Q ss_pred hhccccCCCCCCCceeEEecCCCeeEeechhHHHHHH
Q 031058 79 EVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTIL 115 (166)
Q Consensus 79 ~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~L 115 (166)
.+|+-||.. ++.|..+.=| +||.+.-...|.-|
T Consensus 26 ~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~L 58 (140)
T 2olm_A 26 RKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGL 58 (140)
T ss_dssp GSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTS
T ss_pred CcCCCCCCC---CCCceeeccC-EEEchhccchhccC
Confidence 589999965 4789885212 88876666655544
No 42
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=34.70 E-value=10 Score=26.09 Aligned_cols=9 Identities=44% Similarity=0.896 Sum_probs=7.0
Q ss_pred hhccccCCC
Q 031058 79 EVCTTCGNH 87 (166)
Q Consensus 79 ~~c~~~g~~ 87 (166)
--|||||.-
T Consensus 5 VRCFTCGkv 13 (66)
T 4ayb_N 5 IRCFTCGSL 13 (66)
T ss_dssp SBCTTTCCB
T ss_pred cccCCCcHh
Confidence 469999964
No 43
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=34.37 E-value=11 Score=26.20 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=8.6
Q ss_pred cchhccccCCCC
Q 031058 77 VKEVCTTCGNHD 88 (166)
Q Consensus 77 ~~~~c~~~g~~d 88 (166)
+.-.|||||.--
T Consensus 3 iPVRCFTCGkvi 14 (70)
T 1twf_J 3 VPVRCFSCGKVV 14 (70)
T ss_dssp CCSBCTTTCCBC
T ss_pred CCeecCCCCCCh
Confidence 345799999654
No 44
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.39 E-value=72 Score=20.50 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 031058 114 ILETDQTRLDFEAKKLQSYVKEKSLFI 140 (166)
Q Consensus 114 ~LEkDQe~lD~EI~kLRseLK~Kv~~L 140 (166)
.||.|-..+++-|..||+++-...++.
T Consensus 21 qlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888877666554
No 45
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=32.99 E-value=65 Score=26.27 Aligned_cols=52 Identities=19% Similarity=0.093 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcChhhhhhh
Q 031058 107 PFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLRSL 158 (166)
Q Consensus 107 P~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~Kfg~~v~ksl 158 (166)
|...|..+.|+.++.+..+|..|+..+...+..=++=..++.+|-.-+++.|
T Consensus 62 ~~~~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 62 QPGDAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457889999999999999999999999888877777888888776555543
No 46
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=32.95 E-value=26 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=14.7
Q ss_pred chhccccCCCCCCCceeEEecCCCeeEe
Q 031058 78 KEVCTTCGNHDSNEHTWMMFPGTDVFAK 105 (166)
Q Consensus 78 ~~~c~~~g~~d~dekVWi~~~gGd~FVk 105 (166)
-.||..||+.-.-. ..|++||-
T Consensus 16 ~qiCqiCGD~VG~~------~~Ge~FVA 37 (93)
T 1weo_A 16 GQFCEICGDQIGLT------VEGDLFVA 37 (93)
T ss_dssp SCBCSSSCCBCCBC------SSSSBCCS
T ss_pred CCccccccCccccC------CCCCEEEe
Confidence 36999999763322 24788875
No 47
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.90 E-value=1.4e+02 Score=21.86 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 107 PFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 107 P~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
+.....++|+...+.++.+|..|+..++.....+...
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888889988888888777766666554
No 48
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.27 E-value=95 Score=19.53 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 031058 111 AHTILETDQTRLDFEAKKLQSYVKEKSL 138 (166)
Q Consensus 111 A~e~LEkDQe~lD~EI~kLRseLK~Kv~ 138 (166)
-...+.++.+..++.|+.|++.+++...
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999999999887654
No 49
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.89 E-value=65 Score=22.13 Aligned_cols=24 Identities=8% Similarity=0.100 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 031058 118 DQTRLDFEAKKLQSYVKEKSLFIS 141 (166)
Q Consensus 118 DQe~lD~EI~kLRseLK~Kv~~L~ 141 (166)
..++|+.+|..|...+......|+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555554444443
No 50
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=31.31 E-value=14 Score=24.06 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=30.3
Q ss_pred CCCCcccchhccccC-CCCCCCceeEEecCCCeeEeechhHHHHHHHH
Q 031058 71 PGTRPLVKEVCTTCG-NHDSNEHTWMMFPGTDVFAKIPFHAAHTILET 117 (166)
Q Consensus 71 ~~~~~~~~~~c~~~g-~~d~dekVWi~~~gGd~FVklP~~~A~e~LEk 117 (166)
-.++-+|.-+|...| +.++=.++.+.= .-+||.+|.+.+...++.
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d--~~s~v~v~~~~~~~~~~~ 58 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMD--NASYVEILNGKGPHVLKV 58 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECS--SCEEEEECTTCHHHHHHH
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeC--CcEEEEECHHHHHHHHHH
Confidence 345567778888777 222224555554 779999999999988764
No 51
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.16 E-value=1e+02 Score=22.74 Aligned_cols=37 Identities=5% Similarity=0.026 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 107 PFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 107 P~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
+.++..++|+...+.++.+|..|+..+......+..+
T Consensus 92 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 92 TILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888777777766655
No 52
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.01 E-value=1.3e+02 Score=20.76 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhc
Q 031058 111 AHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKI 150 (166)
Q Consensus 111 A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~Kf 150 (166)
...-++..+.++..+|..|++.......++.++...+.-+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677788888888888888888888887774444333
No 53
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.61 E-value=1.5e+02 Score=21.18 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 031058 110 AAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADK 149 (166)
Q Consensus 110 ~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~K 149 (166)
+-..-||.+...+..+++.|+.+.......+..+..-|..
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999988888888655544
No 54
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=30.57 E-value=55 Score=22.98 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=35.3
Q ss_pred eeEEecCCCeeEeechhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 031058 93 TWMMFPGTDVFAKIPFHAAHTILETDQTRLDFEAKKLQSYVKE 135 (166)
Q Consensus 93 VWi~~~gGd~FVklP~~~A~e~LEkDQe~lD~EI~kLRseLK~ 135 (166)
+-+.+||+.+++.-..++.-..+..=...++.+|.+..+.+|.
T Consensus 52 itv~~~G~~l~ae~~~~d~yaAID~a~dkLerQLrK~K~k~~~ 94 (101)
T 3v26_X 52 ATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQ 94 (101)
T ss_dssp EEECSTTCCEEEEECCSSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEcCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777899999999888888888888888888888888777763
No 55
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.49 E-value=83 Score=21.12 Aligned_cols=29 Identities=3% Similarity=-0.044 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 115 LETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 115 LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
|+.....+..+++.|+.+......+|..|
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667777777777776666666554
No 56
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=30.48 E-value=35 Score=23.81 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 031058 111 AHTILETDQTRLDFEAKKLQSYVKEKSL 138 (166)
Q Consensus 111 A~e~LEkDQe~lD~EI~kLRseLK~Kv~ 138 (166)
..++|+...+.++.+|..|+..++....
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDR 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666655544443
No 57
>2ibl_A Fibritin; foldon, trimerization, bacteriophage T4, HELP molecule, chaperone; 1.32A {Unidentified phage} PDB: 1ox3_A
Probab=29.86 E-value=1.2e+02 Score=23.22 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=66.2
Q ss_pred CCCCCCCcccchhccccCCCCCCC--ceeEEecCCCeeEeec--------hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 031058 68 TGGPGTRPLVKEVCTTCGNHDSNE--HTWMMFPGTDVFAKIP--------FHAAHTILETDQTRLDFEAKKLQSYVKEKS 137 (166)
Q Consensus 68 ~~~~~~~~~~~~~c~~~g~~d~de--kVWi~~~gGd~FVklP--------~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv 137 (166)
-+|++++|-..+.=+.-|-+++.+ -.||.= |+...--+ -..|--.+++..+.+|..+..+...+.+.+
T Consensus 7 ~~~~~~~~~L~~LPfVDGvP~~gQ~RI~WIKN--GE~L~GAsTk~gndG~LNRa~VqVQkNVv~Ld~N~~~~~dkvnEvi 84 (130)
T 2ibl_A 7 HHGSGTDIVLNDLPFVDGPPAEGQSRISWIKN--GEEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETAN 84 (130)
T ss_dssp ------CCCCCCCSEESSSCCTTCEECCCCCT--TSCCCCCSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCccccCCCCCCCCCCCceeeeeeec--CccccccccccCCCcccccchhhhhhhHHHHhhhHHHHHHHHHHHH
Confidence 458888888888888888777655 468887 77665433 246778899999999999999999999999
Q ss_pred HHHHHH-HhhhhhcChhhhhh
Q 031058 138 LFISEK-GALADKISPGVLRS 157 (166)
Q Consensus 138 ~~L~EL-~~Ly~Kfg~~v~ks 157 (166)
...+.. +++|...||-+=..
T Consensus 85 d~VN~I~~a~~~~~~~r~~q~ 105 (130)
T 2ibl_A 85 SDIKTIQEAGYIPEAPRDGQA 105 (130)
T ss_dssp HHHHHHHTSCCCCCCCCSSCC
T ss_pred HHHHHHhhhccCCcCcccchh
Confidence 999999 99999888865443
No 58
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.59 E-value=1.2e+02 Score=19.67 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 113 TILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 113 e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
.-|+...+.+..+-..|+.++......+..|
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544
No 59
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=29.42 E-value=24 Score=30.64 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=33.3
Q ss_pred hccCCCCCCCcccch---hccccCCCCCCCceeEEecCCCeeEeec
Q 031058 65 MKDTGGPGTRPLVKE---VCTTCGNHDSNEHTWMMFPGTDVFAKIP 107 (166)
Q Consensus 65 ~~~~~~~~~~~~~~~---~c~~~g~~d~dekVWi~~~gGd~FVklP 107 (166)
|+=+.|++..+|.++ ||...|-. -..-.|-.||.|+++++++
T Consensus 30 ~~if~g~~~~~la~~~~~ia~~lg~~-l~~~~~~~F~dGE~~v~i~ 74 (379)
T 2ji4_A 30 LVLFSANSNSSCMELSKKIAERLGVE-MGKVQVYQEPNRETRVQIQ 74 (379)
T ss_dssp CEEEECCCSGGGGHHHHHHHHHHTCC-CCCEEEEECTTSCEEEEEC
T ss_pred EEEEECCCCHHHHHhHHHHHHHhCCc-eEeeEEEECCCCCEEEEeC
Confidence 566789999999999 99987743 3445778898888888875
No 60
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.21 E-value=15 Score=28.42 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=17.0
Q ss_pred chhccccCCCCCCCceeEEe
Q 031058 78 KEVCTTCGNHDSNEHTWMMF 97 (166)
Q Consensus 78 ~~~c~~~g~~d~dekVWi~~ 97 (166)
.-||..||.....+..|+|.
T Consensus 93 ~~VC~~C~~~~~~~~~W~C~ 112 (153)
T 2zet_C 93 LFVCKSCSHAHPEEQGWLCD 112 (153)
T ss_dssp CEECGGGEECCSSSSSCEEH
T ss_pred chhhcccccccCCCCcEeeH
Confidence 46899999888888899996
No 61
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.94 E-value=53 Score=25.35 Aligned_cols=33 Identities=30% Similarity=0.620 Sum_probs=21.4
Q ss_pred hhccccCCCCCCCceeEEecCCCeeEeechhHHHHHH
Q 031058 79 EVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTIL 115 (166)
Q Consensus 79 ~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~L 115 (166)
.+|+-||..+ +.|..+.=| +||.+.-.-.|.-|
T Consensus 30 ~~CaDCga~~---P~WaS~n~G-vfiC~~CsgiHR~L 62 (149)
T 2crw_A 30 KVCFDCGAKN---PSWASITYG-VFLCIDCSGSHRSL 62 (149)
T ss_dssp SBCSSSCCBS---CCCEETTTT-EECCHHHHHHHHHH
T ss_pred CcCCCCcCCC---CCcEEeccC-EEEchhcchhhccC
Confidence 5899999654 688885212 77766555555444
No 62
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.92 E-value=1.4e+02 Score=21.55 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=18.0
Q ss_pred CCeeEee--chhHHHHHHHHHHHHHHHHHHHHHh
Q 031058 100 TDVFAKI--PFHAAHTILETDQTRLDFEAKKLQS 131 (166)
Q Consensus 100 Gd~FVkl--P~~~A~e~LEkDQe~lD~EI~kLRs 131 (166)
..+|-++ -.+.++.=|+.+..+++++|..|..
T Consensus 35 s~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 35 ATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466553 3455666666666666666655543
No 63
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=27.92 E-value=1.2e+02 Score=23.63 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 108 FHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 108 ~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
.+...++|++..++++.+|..|+..++.....+..+
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (278)
T 1r8e_A 77 MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRM 112 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999998888777777666
No 64
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=27.62 E-value=39 Score=23.71 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=12.7
Q ss_pred hccccCCCC------CCCceeEEecCC
Q 031058 80 VCTTCGNHD------SNEHTWMMFPGT 100 (166)
Q Consensus 80 ~c~~~g~~d------~dekVWi~~~gG 100 (166)
.|+-|+++. ++..+|+||+.|
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg 65 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCG 65 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCC
Confidence 466666543 345689998533
No 65
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=26.76 E-value=1.4e+02 Score=21.61 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 031058 108 FHAAHTILETDQTRLDFEAKKLQSYVKEKSLFI 140 (166)
Q Consensus 108 ~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L 140 (166)
.....++|+...+.++.+|..|+.-++.....+
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 77 SADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777776665554444
No 66
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=25.90 E-value=78 Score=22.01 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=21.2
Q ss_pred HHHhHHHHHHHHHHHH--HhhhhhcChhhhh
Q 031058 128 KLQSYVKEKSLFISEK--GALADKISPGVLR 156 (166)
Q Consensus 128 kLRseLK~Kv~~L~EL--~~Ly~Kfg~~v~k 156 (166)
++..-...-+.+++|| +.||||+-++|-+
T Consensus 39 el~~f~~AaDHR~AEL~~~klyDkvP~sVW~ 69 (72)
T 1jw2_A 39 ELAVFYSAADHRLAELTMNKLYDKIPSSVWK 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchHhhCCHHHhH
Confidence 3344444567789999 9999999888754
No 67
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.79 E-value=1.4e+02 Score=20.88 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-Hhhh
Q 031058 118 DQTRLDFEAKKLQSYVKEKSLFISEK-GALA 147 (166)
Q Consensus 118 DQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly 147 (166)
.|..+..|+..+-..+..|...|.|| ..|+
T Consensus 42 ~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 42 ERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56778889999999999999999999 5443
No 68
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=25.77 E-value=1.6e+02 Score=21.79 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 107 PFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 107 P~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
+.....++|+...+.++.+|..|+.-++.....+..+
T Consensus 77 ~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~ 113 (146)
T 3hh0_A 77 ETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKF 113 (146)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888889999999999988887777666655
No 69
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.44 E-value=1.6e+02 Score=24.13 Aligned_cols=39 Identities=15% Similarity=-0.123 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhh
Q 031058 110 AAHTILETDQTRLDFEAKKLQSYVKEKSLF-ISEKGALAD 148 (166)
Q Consensus 110 ~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~-L~EL~~Ly~ 148 (166)
++..-|+...+.++.+|+.+.++++..... ...|..++.
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~ 265 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGEALIALWT 265 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777776666 333343333
No 70
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.20 E-value=1e+02 Score=27.90 Aligned_cols=30 Identities=7% Similarity=-0.092 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 114 ILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 114 ~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
-|.....++..+|+.|..++++...+|.++
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777776655
No 71
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=24.66 E-value=40 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.621 Sum_probs=14.7
Q ss_pred hccccCCCCCCCceeEEe
Q 031058 80 VCTTCGNHDSNEHTWMMF 97 (166)
Q Consensus 80 ~c~~~g~~d~dekVWi~~ 97 (166)
-|..|+..+.-.++||.+
T Consensus 60 ~C~~C~~~~~c~~~~y~~ 77 (78)
T 1xn7_A 60 SCKSCPEGKACLREWWAL 77 (78)
T ss_dssp SCCCCCCCCCCCCCEEEE
T ss_pred CCCCCCCCCCCCceeEec
Confidence 388888887778999976
No 72
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.51 E-value=1.6e+02 Score=20.28 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-Hhhh
Q 031058 118 DQTRLDFEAKKLQSYVKEKSLFISEK-GALA 147 (166)
Q Consensus 118 DQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly 147 (166)
.|..+..|+..+-+.+..|...|.|| ..|+
T Consensus 36 ~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 36 EQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56778888999999999999999999 5443
No 73
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.29 E-value=97 Score=19.85 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 031058 108 FHAAHTILETDQTRLDFEAKKLQSYVKEKSL 138 (166)
Q Consensus 108 ~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~ 138 (166)
.+.-...+..+.+.+..++..|+.++.....
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566788888888888777765443
No 74
>4htm_A CREB-regulated transcription coactivator 2; alpha-helix, CREB binding, protein binding; 2.00A {Homo sapiens}
Probab=24.13 E-value=36 Score=20.57 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhhccccccCcchhhhccCCC
Q 031058 40 REALTALRKRARTTKTSVISPFESIMKDTGG 70 (166)
Q Consensus 40 REAl~aL~k~~~~~k~s~~~p~~~~~~~~~~ 70 (166)
|++.+++|..+- .-|+.||+++.+
T Consensus 10 ia~~~~kqae~~-------~~fe~vm~~~~~ 33 (34)
T 4htm_A 10 IALQKQRQAEET-------AAFEEVMMDIGS 33 (34)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHTC--
T ss_pred HHHHHHHHHHHH-------HHHhcccccccc
Confidence 455555554421 248889987765
No 75
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.98 E-value=1.1e+02 Score=21.94 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 031058 115 LETDQTRLDFEAKKLQSYVKEKSLFISEKGA 145 (166)
Q Consensus 115 LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~ 145 (166)
++..+.++...|+.|+.++......|+|++.
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 76
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.66 E-value=1.2e+02 Score=18.98 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 031058 115 LETDQTRLDFEAKKLQSYVKEKSLFIS 141 (166)
Q Consensus 115 LEkDQe~lD~EI~kLRseLK~Kv~~L~ 141 (166)
+...++.+++.|..|...+......+.
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777766665554443
No 77
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=23.60 E-value=2.3e+02 Score=23.02 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=30.8
Q ss_pred echhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HhhhhhcChhh
Q 031058 106 IPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK--GALADKISPGV 154 (166)
Q Consensus 106 lP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL--~~Ly~Kfg~~v 154 (166)
+|.-.-++.+-.-.+.+.+.|+.+...+..+...|.+| ..|..-|.+-+
T Consensus 372 lPpl~EQ~~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~sLL~~af~Gel 422 (464)
T 2y7c_A 372 LPPVKEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFRGEL 422 (464)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 44444444444444566667888888888888888888 44555565543
No 78
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.53 E-value=1.4e+02 Score=21.96 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=42.8
Q ss_pred CCCceeEEecCCCeeEeechhHHHH-------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 031058 89 SNEHTWMMFPGTDVFAKIPFHAAHT-------------ILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADK 149 (166)
Q Consensus 89 ~dekVWi~~~gGd~FVklP~~~A~e-------------~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~K 149 (166)
++..+.+-+ |+++|++-....+.+ =++.-.+-++..|+.+...++.....+.++..-+..
T Consensus 58 ~~~~ilvpl-g~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~ 130 (151)
T 2zdi_C 58 EKPEILVPI-GAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGE 130 (151)
T ss_dssp SSCEEEEEC-SSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEc-CCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688888 667888844443321 245567789999999999999999999888554443
No 79
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.32 E-value=2e+02 Score=20.22 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcChhhhh
Q 031058 113 TILETDQTRLDFEAKKLQSYVKEKSLFISEKGALADKISPGVLR 156 (166)
Q Consensus 113 e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~Kfg~~v~k 156 (166)
..++...+.|+.|=..|+.++.....++..|..++...-+++++
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~ 82 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLA 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhc
Confidence 45677888999999999999999999999885554444444544
No 80
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.28 E-value=2.2e+02 Score=25.06 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEee
Q 031058 27 HQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKI 106 (166)
Q Consensus 27 ~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVkl 106 (166)
.+++++|..|....-.+..||..
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~--------------------------------------------------------- 53 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHE--------------------------------------------------------- 53 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------------
Q ss_pred chhHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHH-Hhhhhhc
Q 031058 107 PFHAAHTILE------TDQTRLDFEAKKLQSYVKEKSLFISEK-GALADKI 150 (166)
Q Consensus 107 P~~~A~e~LE------kDQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kf 150 (166)
....-..+- .|.+++-.++..|.++++.....+.++ ..+...+
T Consensus 54 -~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 54 -RNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp -HHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 81
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.52 E-value=1.5e+02 Score=20.12 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=23.3
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 109 HAAHTIL---ETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 109 ~~A~e~L---EkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
.+|.++| +....++..+++.|+.+......+|..|
T Consensus 43 ~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555554 4566677888888888887777766543
No 82
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.03 E-value=1.3e+02 Score=20.01 Aligned_cols=34 Identities=29% Similarity=0.201 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 110 AAHTILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 110 ~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
.....++.+|..+|.+++-+.+..++....|..+
T Consensus 19 ~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~ 52 (64)
T 3t97_C 19 REVEKVKLDQKRLDQELDFILSQQKELEDLLSPL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888889988888888888877777665
No 83
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.99 E-value=1.8e+02 Score=20.75 Aligned_cols=104 Identities=12% Similarity=0.167 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCce
Q 031058 14 EIENEAEHLLFARHQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHT 93 (166)
Q Consensus 14 e~E~~ae~vL~~k~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekV 93 (166)
+++.+.+..=..++++-.+-.+++.-+.++.-+++... ++ +.+. + .++..+
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e----~l--------~~l~----------------~-~~~~~~ 52 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEK----TL--------SDIQ----------------G-KDGSET 52 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--------HHHT----------------T-CTTCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--------Hhcc----------------c-CCCCeE
Confidence 35566666667778888888888888888877776421 11 1110 0 134457
Q ss_pred eEEecCCCeeEeechhHHHHH-------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 031058 94 WMMFPGTDVFAKIPFHAAHTI-------------LETDQTRLDFEAKKLQSYVKEKSLFISEKGALA 147 (166)
Q Consensus 94 Wi~~~gGd~FVklP~~~A~e~-------------LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly 147 (166)
.+-+ |+++|++-....+.+. ++.-.+-++..++.++..++.....+..+..-+
T Consensus 53 lvpl-g~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 53 LVPV-GAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp EEEE-ETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEc-CCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 5568877443332221 344566788888888888888888887774433
No 84
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=21.35 E-value=1.5e+02 Score=23.28 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 117 TDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 117 kDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
+|.+.|+.|-.+++..++.|...|.||
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL 31 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQEL 31 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777776
No 85
>2o4w_A Lysozyme; protein folding, protein stability, protein engineering, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=21.09 E-value=98 Score=23.64 Aligned_cols=52 Identities=8% Similarity=-0.045 Sum_probs=32.8
Q ss_pred eechhHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhhhhhcChhhhh
Q 031058 105 KIPFHAAHTILETDQTRLDFEAKKLQS----YVKEKSLFISEKGALADKISPGVLR 156 (166)
Q Consensus 105 klP~~~A~e~LEkDQe~lD~EI~kLRs----eLK~Kv~~L~EL~~Ly~Kfg~~v~k 156 (166)
.++.++|..+|++|....+..|++.-. ...--.++...|..+.=-+|++-+.
T Consensus 46 ~iT~~ea~~ll~~Dl~~~~~~v~~~~~~~~~~v~l~q~q~dALvSfafNvG~g~~~ 101 (171)
T 2o4w_A 46 VITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVA 101 (171)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHHHHHHHHHHCHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHHHHHHHHHHhcCccccc
Confidence 588999999999999999988887433 1222333334444444444544443
No 86
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=21.08 E-value=1.1e+02 Score=24.39 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=22.1
Q ss_pred hhccccCCCCCCCceeEEecCCCeeEeechhHHHHHH
Q 031058 79 EVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHAAHTIL 115 (166)
Q Consensus 79 ~~c~~~g~~d~dekVWi~~~gGd~FVklP~~~A~e~L 115 (166)
.+|+.||..+ +.|..+.=| +|+.+...-.+.-|
T Consensus 43 ~~c~dc~~~~---p~w~s~~~g-~~~c~~cs~~hr~l 75 (301)
T 2b0o_E 43 SQCCDCGAAD---PTWLSTNLG-VLTCIQCSGVHREL 75 (301)
T ss_dssp TBCTTTCCBS---CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CcCCCCCCCC---CCeEEeecC-eEEcHHHHHHHHhh
Confidence 5899999754 689874213 88876665555544
No 87
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.99 E-value=1.7e+02 Score=18.63 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 031058 107 PFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFI 140 (166)
Q Consensus 107 P~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L 140 (166)
|...=.+.|..+...+..+++.|...+.+.-.+|
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666666555555544
No 88
>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
Probab=20.93 E-value=1e+02 Score=23.09 Aligned_cols=52 Identities=6% Similarity=-0.099 Sum_probs=33.1
Q ss_pred eechhHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHhhhhhcChhhhh
Q 031058 105 KIPFHAAHTILETDQTRLDFEAKKLQSY----VKEKSLFISEKGALADKISPGVLR 156 (166)
Q Consensus 105 klP~~~A~e~LEkDQe~lD~EI~kLRse----LK~Kv~~L~EL~~Ly~Kfg~~v~k 156 (166)
.++.++|..+|++|....+..|++.=.. ..--.++...|..+.=-+|++-+.
T Consensus 57 ~iT~~ea~~ll~~dl~~~~~~v~~~~~~~~~~~~l~q~q~dALvs~~fN~G~~~~~ 112 (164)
T 1swy_A 57 VITKDEAEKLFNQDVAAAVRGILRNAKLKPVYDSLDAVRECALINMVFQMGETGVA 112 (164)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHHCHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHHHHHHHHHHcCCCcccc
Confidence 5899999999999999999888874331 222233334444444445554444
No 89
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.93 E-value=9.2e+02 Score=27.10 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=35.8
Q ss_pred echhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 031058 106 IPFHAAHTILETDQTRLDFEAKKLQSYVKEKSLFISEKGALAD 148 (166)
Q Consensus 106 lP~~~A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL~~Ly~ 148 (166)
-|..++...+++..+...++.+..++.+++...+|.+|..-|+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998888888888888888888888855554
No 90
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.82 E-value=3.1e+02 Score=24.69 Aligned_cols=66 Identities=21% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhhhHHHHHHHHhhhhhccccccCcchhhhccCCCCCCCcccchhccccCCCCCCCceeEEecCCCeeEee
Q 031058 27 HQLVESDIVRNGNREALTALRKRARTTKTSVISPFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKI 106 (166)
Q Consensus 27 ~qlv~lDk~Rn~nREAl~aL~k~~~~~k~s~~~p~~~~~~~~~~~~~~~~~~~~c~~~g~~d~dekVWi~~~gGd~FVkl 106 (166)
.+|+++|..|...+-.+..||..
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~--------------------------------------------------------- 55 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKK--------------------------------------------------------- 55 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------------
Q ss_pred chhHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHH-Hhhhhhc
Q 031058 107 PFHAAHTILET------DQTRLDFEAKKLQSYVKEKSLFISEK-GALADKI 150 (166)
Q Consensus 107 P~~~A~e~LEk------DQe~lD~EI~kLRseLK~Kv~~L~EL-~~Ly~Kf 150 (166)
....-..+-+ |.+.+-.+...|.++++.....+.++ ..+...+
T Consensus 56 -rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 56 -LNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp -HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 91
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.41 E-value=59 Score=22.60 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 031058 111 AHTILETDQTRLDFEAKKLQSYVKEKSLFI 140 (166)
Q Consensus 111 A~e~LEkDQe~lD~EI~kLRseLK~Kv~~L 140 (166)
..++|+...+.++.+|..|+..++.....+
T Consensus 75 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 75 PRAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777766665544433
No 92
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.41 E-value=2.9e+02 Score=23.37 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=27.8
Q ss_pred eeEeechhHHHHHHHHHHHHHHHHHHHHHhHH
Q 031058 102 VFAKIPFHAAHTILETDQTRLDFEAKKLQSYV 133 (166)
Q Consensus 102 ~FVklP~~~A~e~LEkDQe~lD~EI~kLRseL 133 (166)
+++.+..++..+-|+..+++++++|+++...+
T Consensus 239 ~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 239 PLAYINFDEYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56779999999999999999999999996444
No 93
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.10 E-value=2e+02 Score=24.37 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 031058 114 ILETDQTRLDFEAKKLQSYVKEKSLFISEK 143 (166)
Q Consensus 114 ~LEkDQe~lD~EI~kLRseLK~Kv~~L~EL 143 (166)
-|++...+-.+.|++|..+++..-.+|.++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 433 SLDAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555444444
Done!