Query 031060
Match_columns 166
No_of_seqs 183 out of 1117
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyj_A Low-density lipoprotein 99.9 5.3E-23 1.8E-27 146.5 8.0 71 39-114 5-79 (82)
2 2fcw_B LDL receptor, low-densi 99.9 2.1E-23 7E-28 148.5 4.5 69 40-113 4-74 (80)
3 1n7d_A LDL receptor, low-densi 99.7 6.4E-17 2.2E-21 149.6 8.0 69 39-112 88-158 (699)
4 3m0c_C LDL receptor, low-densi 99.7 7.4E-18 2.5E-22 159.2 0.0 73 39-114 24-100 (791)
5 1n7d_A LDL receptor, low-densi 99.6 1.8E-16 6.2E-21 146.5 8.2 82 29-115 115-210 (699)
6 2xrc_A Human complement factor 99.6 1E-15 3.4E-20 139.3 6.2 69 41-114 206-274 (565)
7 3m0c_C LDL receptor, low-densi 99.6 1.4E-16 4.6E-21 150.6 0.0 71 39-114 106-178 (791)
8 2kny_A LRP-1, linker, APO-E; l 99.2 2.5E-12 8.4E-17 91.4 2.1 59 39-101 9-75 (80)
9 1ajj_A LR5, low-density lipopr 99.2 8.2E-12 2.8E-16 76.5 3.0 34 40-74 3-36 (37)
10 1ajj_A LR5, low-density lipopr 99.2 1.2E-11 4.3E-16 75.7 2.7 34 77-114 2-35 (37)
11 1cr8_A Protein (LOW density li 99.2 2.5E-11 8.6E-16 76.3 4.1 35 40-74 5-39 (42)
12 2jm4_A Relaxin receptor 1; LDL 99.1 2.8E-11 9.5E-16 76.5 4.2 36 39-74 7-42 (43)
13 2knx_A Prolow-density lipoprot 99.1 2.1E-11 7.1E-16 79.7 3.6 39 39-78 7-46 (50)
14 3dpr_E LDL-receptor class A 3; 99.1 2.3E-11 7.8E-16 75.4 3.4 34 77-114 1-36 (39)
15 3a7q_B Low-density lipoprotein 99.1 2.7E-11 9.4E-16 76.8 3.7 35 39-74 8-42 (44)
16 3dpr_E LDL-receptor class A 3; 99.1 2.5E-11 8.5E-16 75.2 3.4 35 40-74 2-37 (39)
17 1d2l_A Lipoprotein receptor re 99.1 3.4E-11 1.2E-15 77.1 3.9 34 40-74 7-40 (45)
18 1d2l_A Lipoprotein receptor re 99.1 3.3E-11 1.1E-15 77.2 3.8 36 76-115 5-40 (45)
19 2jm4_A Relaxin receptor 1; LDL 99.1 2.9E-11 1E-15 76.4 3.5 35 76-114 6-41 (43)
20 2i1p_A Low-density lipoprotein 99.1 1.5E-11 5E-16 79.4 1.9 37 39-75 7-43 (48)
21 1cr8_A Protein (LOW density li 99.1 3.5E-11 1.2E-15 75.7 3.5 36 76-114 3-38 (42)
22 1k7b_A Subgroup A ROUS sarcoma 99.1 2.5E-11 8.6E-16 77.8 2.6 35 39-74 7-46 (47)
23 2gtl_O Extracellular hemoglobi 99.1 1.8E-12 6.3E-17 107.3 -3.6 51 60-114 38-90 (215)
24 2m0p_A Low-density lipoprotein 99.1 1.7E-11 5.7E-16 81.2 1.7 36 76-115 6-41 (52)
25 2m0p_A Low-density lipoprotein 99.1 1.9E-11 6.6E-16 80.9 1.8 35 39-74 7-41 (52)
26 3a7q_B Low-density lipoprotein 99.1 4.3E-11 1.5E-15 75.9 3.1 35 76-114 7-41 (44)
27 2kny_A LRP-1, linker, APO-E; l 99.1 3E-11 1E-15 85.7 2.2 54 76-136 8-63 (80)
28 1j8e_A Low-density lipoprotein 99.1 4.3E-11 1.5E-15 75.9 2.5 36 75-114 3-38 (44)
29 1k7b_A Subgroup A ROUS sarcoma 99.1 4.8E-11 1.6E-15 76.5 2.1 35 76-114 6-45 (47)
30 1jrf_A TVA LDL-A module, subgr 99.1 5.4E-11 1.9E-15 76.2 2.4 40 75-114 3-43 (47)
31 1jrf_A TVA LDL-A module, subgr 99.0 5.2E-11 1.8E-15 76.3 1.0 36 39-74 5-44 (47)
32 2knx_A Prolow-density lipoprot 99.0 1.8E-10 6.3E-15 75.2 3.1 35 76-114 6-41 (50)
33 2i1p_A Low-density lipoprotein 99.0 7.7E-11 2.6E-15 76.0 1.0 36 76-114 6-41 (48)
34 1j8e_A Low-density lipoprotein 99.0 2E-10 6.9E-15 72.8 2.8 33 40-73 6-38 (44)
35 2gtl_O Extracellular hemoglobi 99.0 8.8E-11 3E-15 97.2 0.4 53 31-84 47-103 (215)
36 2fyj_A Low-density lipoprotein 99.0 4E-10 1.4E-14 79.8 3.7 51 76-135 4-55 (82)
37 2fcw_B LDL receptor, low-densi 98.8 1.4E-09 4.6E-14 76.9 3.1 35 76-114 2-36 (80)
38 2gtl_M Hemoglobin linker chain 98.8 1.2E-09 4E-14 90.6 1.2 66 39-114 54-120 (217)
39 2gtl_N Extracellular hemoglobi 98.8 6.1E-09 2.1E-13 86.5 5.2 49 39-87 53-109 (220)
40 2xrc_A Human complement factor 98.7 6.5E-09 2.2E-13 94.5 2.4 66 41-115 173-238 (565)
41 2gtl_M Hemoglobin linker chain 98.6 1.2E-08 4.2E-13 84.5 3.0 35 75-113 52-88 (217)
42 3ojy_B Complement component C8 98.5 8.5E-08 2.9E-12 87.5 4.1 46 42-95 69-115 (537)
43 2gtl_N Extracellular hemoglobi 98.4 9.3E-08 3.2E-12 79.4 3.5 34 76-113 52-87 (220)
44 3ojy_A Complement component C8 98.4 1.3E-07 4.4E-12 86.8 4.1 45 41-86 67-112 (554)
45 3ojy_B Complement component C8 98.3 6.3E-07 2.2E-11 81.8 4.7 31 80-114 69-100 (537)
46 3ojy_A Complement component C8 98.1 2E-06 6.8E-11 79.0 4.6 33 77-114 66-99 (554)
47 3t5o_A Complement component C6 97.6 2.5E-05 8.6E-10 74.9 2.9 32 42-74 121-152 (913)
48 3t5o_A Complement component C6 97.5 4.6E-05 1.6E-09 73.1 3.7 31 80-114 121-151 (913)
49 1hvw_A Omega-ACTX-HV1A, omega- 27.1 36 0.0012 19.1 1.8 17 93-109 1-17 (26)
50 3si5_X Protein CASC5; BUBR1-bl 25.1 36 0.0012 18.7 1.5 14 152-165 8-21 (24)
51 1qle_D Cytochrome AA3, ccytoch 20.1 67 0.0023 19.7 2.3 21 2-22 22-42 (43)
No 1
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.88 E-value=5.3e-23 Score=146.55 Aligned_cols=71 Identities=28% Similarity=0.398 Sum_probs=64.6
Q ss_pred CCCCceEeCCCCceecCCCCCCCCCCCCCCCCC-CCCc--CCCC-CeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDE-PGTS--ACPA-GKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE-~~c~--~C~~-~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
..+++|+|.+| +|||.+|+|||+.||.||||| .+|. .|.+ .+|+|.++ +||+..|+|||+.||.|||||.+
T Consensus 5 C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g----~CI~~~~~CDG~~DC~DgSDE~~ 79 (82)
T 2fyj_A 5 CPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG----RCININWRCDNDNDCGDNSDEAG 79 (82)
T ss_dssp SCTTEEETTSS-CEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTS----CEEETTCBSSSSBCCSSSSSCSC
T ss_pred CCCCceEeCCC-CEEeccccCCCcccCCCccccccccccccCCCCCceECCCC----CeEcHHHccCCCCcCCCCccccC
Confidence 35789999998 699999999999999999999 6764 6854 99999998 89999999999999999999974
No 2
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.88 E-value=2.1e-23 Score=148.48 Aligned_cols=69 Identities=36% Similarity=0.660 Sum_probs=64.9
Q ss_pred CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCc--CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCC
Q 031060 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY 113 (166)
Q Consensus 40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~ 113 (166)
.+++|+|.+| +|||.+|+|||+.||.|||||.+|. .|++.+|+|.++ .|||..|+|||+.||.|||||.
T Consensus 4 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~dgsDE~ 74 (80)
T 2fcw_B 4 SQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDEW 74 (80)
T ss_dssp CTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTS----CEEEGGGTTSSSCCSTTCGGGC
T ss_pred CCCccCCCCC-CEEeeecccCCcccCCCcccccccccccCCceeeECCCC----CEEecccccCCCcCCCCCCCcC
Confidence 5789999998 6999999999999999999999975 699999999998 8999999999999999999995
No 3
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.67 E-value=6.4e-17 Score=149.56 Aligned_cols=69 Identities=36% Similarity=0.650 Sum_probs=61.2
Q ss_pred CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCc--CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCC
Q 031060 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE 112 (166)
Q Consensus 39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE 112 (166)
+.+++|+|.+| +||+..|+|||..||.|||||.+|. .|++.+|+|.++ .||+..|+|||..||.|||||
T Consensus 88 C~~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE 158 (699)
T 1n7d_A 88 CSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDE 158 (699)
T ss_dssp CCSSCCCSSCC-----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSS----CCCCTTSTTCSSCCSSSSSSS
T ss_pred cccCcEEcCCC-CEecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCC----cccchhcccCCCCcCCCCccc
Confidence 45789999998 6999999999999999999999875 699999999988 899999999999999999999
No 4
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.66 E-value=7.4e-18 Score=159.22 Aligned_cols=73 Identities=32% Similarity=0.577 Sum_probs=0.0
Q ss_pred CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCC--Cc--CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG--TS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~--c~--~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
+.+++|+|.+| +||+..|+|||..||.|||||.+ |. .|++.+|+|.++. .+|||..|+|||..||.|||||.+
T Consensus 24 C~~~~f~C~~g-~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~--~~Ci~~~~~CDg~~dC~dgsDE~~ 100 (791)
T 3m0c_C 24 CERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRV--NRCIPQFWRCDGQVDCDNGSDEQG 100 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcCccCCCCC-CEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCC--CCEeeccccCCCCcCcCCCcccCC
Confidence 45789999998 79999999999999999999987 43 6999999999820 189999999999999999999985
No 5
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.65 E-value=1.8e-16 Score=146.53 Aligned_cols=82 Identities=29% Similarity=0.342 Sum_probs=69.9
Q ss_pred ccCCCCCcc--CCCCCceEeCCCCceecCCCCCCCCCCCCCCCCC--CCCc----------CCCCCeeeecCCCCCceec
Q 031060 29 LGVHPLDEK--YFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDE--PGTS----------ACPAGKFYCGNVGSTPQFI 94 (166)
Q Consensus 29 ~Gv~p~~~~--~~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE--~~c~----------~C~~~~F~C~ng~~~~~CI 94 (166)
.|.++.... .+.+.+|+|.++ +|||..|+|||..||.||||| .+|. .|++.+|+|.++ .||
T Consensus 115 dgsDE~~C~~~~C~~~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g----~Ci 189 (699)
T 1n7d_A 115 DGSDEASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG----ECI 189 (699)
T ss_dssp SSCSSSSCCCCCCCSSCCCCSSS-CCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSS----CCC
T ss_pred CCCccCCcCccccCccccCCCCC-cccchhcccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCC----ceE
Confidence 454554432 345789999988 699999999999999999999 6663 688999999998 899
Q ss_pred cCCCccCCCCCCCCCCCCCCC
Q 031060 95 FSSRVNDRICDCCDGSDEYDS 115 (166)
Q Consensus 95 ~~~~vCDG~~DC~DGSDE~~~ 115 (166)
+.+|+|||..||.|||||.+.
T Consensus 190 ~~~~~CDg~~dC~dgsDE~~C 210 (699)
T 1n7d_A 190 HSSWRCDGGPDCKDKSDEENC 210 (699)
T ss_dssp STTCTTSSSCCSTTSCSSCSC
T ss_pred echhccCCCCCCCCCcccccC
Confidence 999999999999999999863
No 6
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=139.31 Aligned_cols=69 Identities=29% Similarity=0.479 Sum_probs=63.3
Q ss_pred CCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 41 p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
.++|+|.++ .||+..|+|||..||+|||||.+|..|++.+|+|.++ .||+..++|||..||.|||||.+
T Consensus 206 ~~~~~C~~~-~ci~~~~~Cdg~~dC~d~sDE~~C~~c~~~~~~C~~~----~C~~~~~~cdG~~dC~~gsDE~~ 274 (565)
T 2xrc_A 206 DDFFQCVNG-KYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSG----VCIPSQYQCNGEVDCITGEDEVG 274 (565)
T ss_dssp ---CBCTTS-CBCCTTSTTSSSCCSSSSSSSSSBSSCSSSCEEETTT----EEECGGGTTSSSCCSSSCTTSSS
T ss_pred cCeeECCCC-CccCHHHcCCCcccCCCCcccccccccCCCceecCCC----cccCccccCCCcccCCCCccccC
Confidence 346999988 6999999999999999999999998899999999998 89999999999999999999975
No 7
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.58 E-value=1.4e-16 Score=150.61 Aligned_cols=71 Identities=35% Similarity=0.647 Sum_probs=0.0
Q ss_pred CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCc--CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
+.+++|+|.+| +||+..|+|||..||.|||||.+|. .|++.+|+|.++ .||+..|+|||..||.|||||..
T Consensus 106 C~~~~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE~~ 178 (791)
T 3m0c_C 106 CSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDEWP 178 (791)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ccCCeEECCCC-CEECHHHcCCCcccCCCCcccccccccccccceeccCCC----ccccccccCCCCCcCCCCCCccc
Confidence 35789999998 6999999999999999999999875 699999999998 89999999999999999999963
No 8
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.22 E-value=2.5e-12 Score=91.38 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=48.2
Q ss_pred CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCC---C---cCCCCCeeeecC--CCCCceeccCCCccC
Q 031060 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG---T---SACPAGKFYCGN--VGSTPQFIFSSRVND 101 (166)
Q Consensus 39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~---c---~~C~~~~F~C~n--g~~~~~CI~~~~vCD 101 (166)
..+++|+|.++.+|||.+|+|||+.||.|||||.. | ..|.+..|+|.+ + .||+..+...
T Consensus 9 C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~----~ci~~~~~gL 75 (80)
T 2kny_A 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELR----VRLASHLRKL 75 (80)
T ss_dssp CSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHH----HHTTTTTTTT
T ss_pred CCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHH----HHHHHHHHHH
Confidence 45789999854479999999999999999999984 3 257788999988 5 6888776543
No 9
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.19 E-value=8.2e-12 Score=76.53 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
.+++|+|.+| +||+.+|+|||..||.|||||.+|
T Consensus 3 ~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 3 SAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCCceEcCCC-CeechhhccCCCCCCCCCccccCC
Confidence 4689999998 799999999999999999999874
No 10
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.16 E-value=1.2e-11 Score=75.71 Aligned_cols=34 Identities=41% Similarity=0.459 Sum_probs=32.0
Q ss_pred CCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 77 C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
|++.+|+|.++ .||+..|+|||+.||.|||||.+
T Consensus 2 C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~ 35 (37)
T 1ajj_A 2 CSAFEFHCLSG----ECIHSSWRCDGGPDCKDKSDEEN 35 (37)
T ss_dssp CCTTCEECTTS----CEECGGGTTSSSCCSTTCGGGTT
T ss_pred CCCCceEcCCC----CeechhhccCCCCCCCCCccccC
Confidence 78899999998 89999999999999999999974
No 11
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.16 E-value=2.5e-11 Score=76.31 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=31.0
Q ss_pred CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
.+++|+|.+..+|||..|+|||..||.|||||.+|
T Consensus 5 ~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 39 (42)
T 1cr8_A 5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39 (42)
T ss_dssp STTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred CCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCC
Confidence 46899998633799999999999999999999874
No 12
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.15 E-value=2.8e-11 Score=76.47 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
..+++|+|.++.+|||..|+|||+.||.|||||.+|
T Consensus 7 C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp CCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred CCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence 346899999933799999999999999999999874
No 13
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=99.15 E-value=2.1e-11 Score=79.70 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=34.3
Q ss_pred CCCCceEeC-CCCceecCCCCCCCCCCCCCCCCCCCCcCCC
Q 031060 39 FSKEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACP 78 (166)
Q Consensus 39 ~~p~~F~C~-~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~ 78 (166)
..+++|+|. ++ +|||..|+|||..||.|||||..|..|+
T Consensus 7 C~~~~F~C~~~g-~CI~~~~~CDG~~DC~DgSDE~~C~~C~ 46 (50)
T 2knx_A 7 CGPSSFSCPGTH-VCVPERWLCDGDKDCADGADESIAAGCL 46 (50)
T ss_dssp TCTTEEEETTTT-EEEETTTTTSSSCCSTTCGGGSGGGTCC
T ss_pred CCCCcEEcCCCC-eEcChhhcCCCCCCCCCCCccccccCCC
Confidence 357899996 66 8999999999999999999999876675
No 14
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.14 E-value=2.3e-11 Score=75.40 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=31.3
Q ss_pred CCCCeeeecC--CCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 77 CPAGKFYCGN--VGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 77 C~~~~F~C~n--g~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
|++.+|+|.+ + .|||.+|+|||+.||.|||||.+
T Consensus 1 C~~~~f~C~~~~g----~Cip~~~~CDg~~DC~dgsDE~~ 36 (39)
T 3dpr_E 1 CRIHEISCGAHST----QCIPVSWRCDGENDCDSGEDEEN 36 (39)
T ss_dssp CCTTTCCCSSSSS----CCCCTTSSSSSSCCSTTTTTSTT
T ss_pred CCCCceecCCCCC----CEeCccccCCCcccCcCCccccc
Confidence 6788999998 4 89999999999999999999974
No 15
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.14 E-value=2.7e-11 Score=76.85 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=31.8
Q ss_pred CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
..+++|+|.++ +|||..|+|||+.||.|||||.+|
T Consensus 8 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C 42 (44)
T 3a7q_B 8 CEKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDC 42 (44)
T ss_dssp CCTTEEECTTS-CEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred CCCCceEcCCC-CEeChhhccCCCCCCCCCccccCC
Confidence 34689999998 799999999999999999999874
No 16
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.14 E-value=2.5e-11 Score=75.22 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=30.9
Q ss_pred CCCceEeCC-CCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 40 SKEVIKCKD-GSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 40 ~p~~F~C~~-g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
.+++|+|.+ ..+|||.+|+|||+.||.|||||.+|
T Consensus 2 ~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C 37 (39)
T 3dpr_E 2 RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37 (39)
T ss_dssp CTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred CCCceecCCCCCCEeCccccCCCcccCcCCcccccC
Confidence 368999998 23799999999999999999999874
No 17
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.13 E-value=3.4e-11 Score=77.10 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=31.6
Q ss_pred CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
.+++|+|.+| +|||.+|+|||+.||.|||||..+
T Consensus 7 ~~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 7 QPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp TBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCCceEcCCC-CeEehhhccCCCCCCCCCCCCCCC
Confidence 4689999998 799999999999999999999874
No 18
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.13 E-value=3.3e-11 Score=77.16 Aligned_cols=36 Identities=36% Similarity=0.579 Sum_probs=33.5
Q ss_pred CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115 (166)
Q Consensus 76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~ 115 (166)
.|++.+|+|.++ .||+..|+|||+.||.|||||...
T Consensus 5 ~C~~~~F~C~~g----~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 5 QCQPGEFACANS----RCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp BTTBTCEEETTT----EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred cCCCCceEcCCC----CeEehhhccCCCCCCCCCCCCCCC
Confidence 588899999998 999999999999999999999863
No 19
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.13 E-value=2.9e-11 Score=76.37 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=32.7
Q ss_pred CCCCCeeeecC-CCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCGN-VGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 76 ~C~~~~F~C~n-g~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
.|++++|+|.+ + .||+..|+|||+.||.|||||.+
T Consensus 6 ~C~~~~f~C~~~g----~CI~~~~~CDg~~DC~DgSDE~~ 41 (43)
T 2jm4_A 6 KCSLGYFPCGNIT----KCLPQLLHCNGVDDCGNQADEDN 41 (43)
T ss_dssp SCCTTEEECSSSS----CEEEGGGTTSSCCCSSSCCTTSS
T ss_pred CCCCCeeECCCCC----eEcCHhhccCCCCCCCCCcccCC
Confidence 58899999999 6 89999999999999999999974
No 20
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=99.12 E-value=1.5e-11 Score=79.43 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=33.1
Q ss_pred CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCc
Q 031060 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS 75 (166)
Q Consensus 39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~ 75 (166)
..+++|+|.++.+||+.+|+|||+.||.|||||.+|.
T Consensus 7 C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43 (48)
T ss_dssp CCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred CCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence 3578999999867999999999999999999998753
No 21
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.12 E-value=3.5e-11 Score=75.67 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=32.2
Q ss_pred CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
.|++.+|+|.+.+ .||+..|+|||+.||.|||||.+
T Consensus 3 ~C~~~~F~C~~~g---~CI~~~~~CDg~~DC~DgSDE~~ 38 (42)
T 1cr8_A 3 GCHTDEFQCRLDG---LCIPLRWRCDGDTDCMDSSDEKS 38 (42)
T ss_dssp CSSTTCEECTTTC---CEECGGGSSSSSCCSSSSTTTTT
T ss_pred CCCCCceEeCCCC---eEcChhhcCCCCcCCCCCCcccC
Confidence 5889999998632 89999999999999999999974
No 22
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=99.11 E-value=2.5e-11 Score=77.84 Aligned_cols=35 Identities=34% Similarity=0.639 Sum_probs=31.1
Q ss_pred CCCCceEeC-----CCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 39 FSKEVIKCK-----DGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 39 ~~p~~F~C~-----~g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
..+++|+|. ++ +|||.+|+|||+.||.|||||.+|
T Consensus 7 C~~~~F~C~~~~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 7 CPPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp CSTTEECCSSCTTSCC-CCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCCceEcCCCCCCCC-cCCCccccCCCcCCCCCCcccCCC
Confidence 347899998 45 799999999999999999999874
No 23
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.11 E-value=1.8e-12 Score=107.26 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCCCCcCCCCCeeee--cCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 60 DNFCDCIDGTDEPGTSACPAGKFYC--GNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 60 DG~~DC~DGSDE~~c~~C~~~~F~C--~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
-+..+|.|+|||.+|..|++++|+| .++ +|||..|+|||..||.|||||.+
T Consensus 38 ~~~~~c~d~sDE~~C~~C~~~~F~C~~~~g----~CIp~~~~CDG~~DC~DgSDE~~ 90 (215)
T 2gtl_O 38 RKAGSLRHRVEELEDPSCDEHEHQCGGDDP----QCISKLFVCDGHNDCRNGEDEKD 90 (215)
T ss_dssp HHHHHHHHHHHHHSCCSSCTTEEECCSSSC----CEEEGGGTTSSSCCSSSCHHHHC
T ss_pred cccccCCcchhhccCCCCCCcceeeCCCCC----cCccccccCCCCCcCCCcccccC
Confidence 3456899999999998899999999 566 89999999999999999999975
No 24
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=1.7e-11 Score=81.15 Aligned_cols=36 Identities=39% Similarity=0.614 Sum_probs=33.7
Q ss_pred CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115 (166)
Q Consensus 76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~ 115 (166)
.|++++|+|.+| .||+..|+|||..||.|||||.+.
T Consensus 6 ~C~~~~F~C~nG----~CIp~~~~CDG~~DC~DgSDE~~~ 41 (52)
T 2m0p_A 6 SCLDTQYTCDNH----QCISKNWVCDTDNDCGDGSDEKNC 41 (52)
T ss_dssp SSCSSEEECTTC----CEEETTSTTSSSCSSSSCHHHHSC
T ss_pred CCCCCceECCCC----CEEecCccCCCCCCCCCCCccccc
Confidence 699999999998 899999999999999999999863
No 25
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=1.9e-11 Score=80.86 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=31.9
Q ss_pred CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
+.+++|+|.+| +|||..|+|||..||.|||||.++
T Consensus 7 C~~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~~~ 41 (52)
T 2m0p_A 7 CLDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKNC 41 (52)
T ss_dssp SCSSEEECTTC-CEEETTSTTSSSCSSSSCHHHHSC
T ss_pred CCCCceECCCC-CEEecCccCCCCCCCCCCCccccc
Confidence 45789999998 699999999999999999999874
No 26
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.09 E-value=4.3e-11 Score=75.95 Aligned_cols=35 Identities=40% Similarity=0.526 Sum_probs=32.3
Q ss_pred CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
.|+..+|+|.++ .||+..|+|||+.||.|||||.+
T Consensus 7 ~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgSDE~~ 41 (44)
T 3a7q_B 7 ECEKDQFQCRNE----RCIPSVWRCDEDDDCLDHSDEDD 41 (44)
T ss_dssp -CCTTEEECTTS----CEEEGGGTTSSSCCSSSSTTTSC
T ss_pred CCCCCceEcCCC----CEeChhhccCCCCCCCCCccccC
Confidence 588999999998 89999999999999999999974
No 27
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.08 E-value=3e-11 Score=85.73 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=41.9
Q ss_pred CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCCCCCCC--ccccCCChHHHHhhhc
Q 031060 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP--NTCVMGGNIEYKAQSY 136 (166)
Q Consensus 76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~~~~C~--~~C~~~g~~~~r~~~~ 136 (166)
.|++++|+|.+.+ .|||..|+|||+.||.|||||... ..|+ ++|.... |++..+
T Consensus 8 ~C~~~~f~C~~~g---~CIp~~~~CDg~~DC~DgsDE~~~-~~C~~~~~C~~~~---f~c~~~ 63 (80)
T 2kny_A 8 TCGPSSFSCPGTH---VCVPERWLCDGDKDCADGADESIA-AGCLYNSTGSGSG---SGSTEE 63 (80)
T ss_dssp CCSSSEEECTTSS---CEEEHHHHTTSSCCSSSSTTTSGG-GTCSSSSTTTTCS---SCHHHH
T ss_pred CCCCCceecCCCC---eEcChhhcCCCCCCCCCCCccccc-cCCCCCcccCccc---chhhhH
Confidence 5899999998532 899999999999999999999752 2476 6787643 355553
No 28
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=99.07 E-value=4.3e-11 Score=75.92 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=33.3
Q ss_pred cCCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 75 SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 75 ~~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
..|++.+|+|.++ .||+..|+|||+.||.|||||..
T Consensus 3 ~~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 3 HSCSSTQFKCNSG----RCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp SSSCTTEEECTTS----CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCCCCceEeCCC----CeEecCcccCCCCCCCCCCCCCC
Confidence 3588999999998 89999999999999999999974
No 29
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=99.05 E-value=4.8e-11 Score=76.52 Aligned_cols=35 Identities=34% Similarity=0.706 Sum_probs=32.0
Q ss_pred CCCCCeeeec-----CCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCG-----NVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 76 ~C~~~~F~C~-----ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
.|++.+|+|. ++ .|||.+|+|||+.||.|||||.+
T Consensus 6 ~C~~~~F~C~~~~~~~g----~CIp~~~~CDG~~DC~DgSDE~~ 45 (47)
T 1k7b_A 6 SCPPGQFRCSEPPGAHG----ECYPQDWLCDGHPDCDDGRDEWG 45 (47)
T ss_dssp CCSTTEECCSSCTTSCC----CCEEGGGSSCSSCCSSSSTTTGG
T ss_pred CCCCCceEcCCCCCCCC----cCCCccccCCCcCCCCCCcccCC
Confidence 5889999998 45 89999999999999999999974
No 30
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=99.05 E-value=5.4e-11 Score=76.17 Aligned_cols=40 Identities=35% Similarity=0.680 Sum_probs=32.6
Q ss_pred cCCCCCeeeecCC-CCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 75 SACPAGKFYCGNV-GSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 75 ~~C~~~~F~C~ng-~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
..|++.+|+|.++ ++...|||.+|+|||+.||.|||||.+
T Consensus 3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~ 43 (47)
T 1jrf_A 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 43 (47)
T ss_dssp CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence 4689999999841 011289999999999999999999973
No 31
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=99.01 E-value=5.2e-11 Score=76.26 Aligned_cols=36 Identities=31% Similarity=0.573 Sum_probs=30.9
Q ss_pred CCCCceEeCC----CCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 39 FSKEVIKCKD----GSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 39 ~~p~~F~C~~----g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
..+++|+|.+ ..+|||.+|+|||+.||.|||||.+|
T Consensus 5 C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C 44 (47)
T 1jrf_A 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44 (47)
T ss_dssp CCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHH
T ss_pred CCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccC
Confidence 3478999984 33799999999999999999999863
No 32
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.99 E-value=1.8e-10 Score=75.15 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=32.4
Q ss_pred CCCCCeeeec-CCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 76 ~C~~~~F~C~-ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
.|++.+|+|. ++ +||+..|+|||+.||.|||||..
T Consensus 6 ~C~~~~F~C~~~g----~CI~~~~~CDG~~DC~DgSDE~~ 41 (50)
T 2knx_A 6 TCGPSSFSCPGTH----VCVPERWLCDGDKDCADGADESI 41 (50)
T ss_dssp TTCTTEEEETTTT----EEEETTTTTSSSCCSTTCGGGSG
T ss_pred CCCCCcEEcCCCC----eEcChhhcCCCCCCCCCCCcccc
Confidence 5889999996 76 89999999999999999999985
No 33
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.98 E-value=7.7e-11 Score=76.02 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=32.9
Q ss_pred CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
.|++.+|+|.++. .||+..|+|||+.||.|||||.+
T Consensus 6 ~C~~~~F~C~~g~---~CI~~~~~CDG~~DC~DgSDE~~ 41 (48)
T 2i1p_A 6 NCTSAQFKCADGS---SCINSRYRCDGVYDCRDNSDEAG 41 (48)
T ss_dssp CCCSSSEECSSSS---CEECGGGSSSSSCCSSSSHHHHS
T ss_pred CCCCCeeECCCCC---EeCCHhhcCCCCCCCCCCccccc
Confidence 5888999999973 69999999999999999999984
No 34
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.98 E-value=2e-10 Score=72.81 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=30.8
Q ss_pred CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCC
Q 031060 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG 73 (166)
Q Consensus 40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~ 73 (166)
.+++|+|.++ +|||..|+|||+.||.|||||..
T Consensus 6 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 6 SSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp CTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCceEeCCC-CeEecCcccCCCCCCCCCCCCCC
Confidence 4789999998 69999999999999999999976
No 35
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.95 E-value=8.8e-11 Score=97.21 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=43.3
Q ss_pred CCCCCccCCCCCceEe--CCCCceecCCCCCCCCCCCCCCCCCCCCc--CCCCCeeee
Q 031060 31 VHPLDEKYFSKEVIKC--KDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYC 84 (166)
Q Consensus 31 v~p~~~~~~~p~~F~C--~~g~~CIp~~~vCDG~~DC~DGSDE~~c~--~C~~~~F~C 84 (166)
.++.....+.+++|+| .+| +|||.+|+|||..||.|||||.+|. .|++.+|+|
T Consensus 47 sDE~~C~~C~~~~F~C~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c 103 (215)
T 2gtl_O 47 VEELEDPSCDEHEHQCGGDDP-QCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIG 103 (215)
T ss_dssp HHHHSCCSSCTTEEECCSSSC-CEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEE
T ss_pred hhhccCCCCCCcceeeCCCCC-cCccccccCCCCCcCCCcccccCCCCCCcCCCceee
Confidence 3333444456899999 566 7999999999999999999999875 688888887
No 36
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=98.95 E-value=4e-10 Score=79.77 Aligned_cols=51 Identities=31% Similarity=0.539 Sum_probs=39.4
Q ss_pred CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCCCCCCC-ccccCCChHHHHhhh
Q 031060 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP-NTCVMGGNIEYKAQS 135 (166)
Q Consensus 76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~~~~C~-~~C~~~g~~~~r~~~ 135 (166)
.|++.+|+|.++ .||+..|+|||+.||.|||||.. .|+ ..|...+ +|++.+
T Consensus 4 ~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~---~C~~~~C~~~~--~f~C~~ 55 (82)
T 2fyj_A 4 TCPPNQFSCASG----RCIPISWTCDLDDDCGDRSDESA---SCAYPTCFPLT--QFTCNN 55 (82)
T ss_dssp SSCTTEEETTSS----CEEETTSSSSCSSSSCSTTTTTS---SCCCSSSCSSS--EEECTT
T ss_pred CCCCCceEeCCC----CEEeccccCCCcccCCCcccccc---ccccccCCCCC--ceECCC
Confidence 588999999998 89999999999999999999931 354 2453322 366654
No 37
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=98.84 E-value=1.4e-09 Score=76.95 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=32.8
Q ss_pred CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
.|++.+|+|.++ .||+..|+|||+.||.|||||.+
T Consensus 2 ~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~ 36 (80)
T 2fcw_B 2 TCSQAEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS 36 (80)
T ss_dssp CCCTTEEECTTS----CEEEGGGTTSSSCCSTTCTTTTT
T ss_pred CCCCCccCCCCC----CEEeeecccCCcccCCCcccccc
Confidence 488999999998 89999999999999999999985
No 38
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.77 E-value=1.2e-09 Score=90.62 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=43.5
Q ss_pred CCCCceEeCC-CCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 39 FSKEVIKCKD-GSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 39 ~~p~~F~C~~-g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
+.+++|+|.+ ...|||.+|+|||..||+|||||... .|....+.|.+ .++-. ....+|.+++||..
T Consensus 54 C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~-~C~~~~~~~~~-----~~~g~----~~~~~C~~~~pe~~ 120 (217)
T 2gtl_M 54 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE-TCSLNITHVGS-----SYTGL----ATWTSCEDLNPDHA 120 (217)
T ss_dssp CCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHH-HHCCGGGCTTC-----EEEEE----EEESSSCSCCSEEE
T ss_pred CCCCceecCCCCCcEechhhccCCCCCCCCCCccccC-cCCCCcccCCc-----ccccc----cCcccCCCCCCCee
Confidence 4578999975 23799999999999999999999720 13322222222 12211 23448888888853
No 39
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.76 E-value=6.1e-09 Score=86.46 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=37.6
Q ss_pred CCCCceEeC-CCCceecCCCCCCCCCCCCCCCCCC--CCc---CCCCC--eeeecCC
Q 031060 39 FSKEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEP--GTS---ACPAG--KFYCGNV 87 (166)
Q Consensus 39 ~~p~~F~C~-~g~~CIp~~~vCDG~~DC~DGSDE~--~c~---~C~~~--~F~C~ng 87 (166)
+.+++|+|. +.+.|||..|+|||..||+|||||. +|. .|.+. ++.|.++
T Consensus 53 C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d 109 (220)
T 2gtl_N 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWH 109 (220)
T ss_dssp SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEEC
T ss_pred CCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCC
Confidence 346899996 2337999999999999999999996 552 56554 4557776
No 40
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.66 E-value=6.5e-09 Score=94.55 Aligned_cols=66 Identities=24% Similarity=0.266 Sum_probs=49.3
Q ss_pred CCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCC
Q 031060 41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115 (166)
Q Consensus 41 p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~ 115 (166)
...|.|..+ .+++..+.||+..+|.+.+++. |...+|+|.++ .||+..++|||+.||.|||||.++
T Consensus 173 ~sl~~C~~~-~~~~~~h~~DagV~C~~~~~~c----~~~~~~~C~~~----~ci~~~~~Cdg~~dC~d~sDE~~C 238 (565)
T 2xrc_A 173 TSLAECTFT-KRRTMGYQDFADVVCYTQKADS----PMDDFFQCVNG----KYISQMKACDGINDCGDQSDELCC 238 (565)
T ss_dssp SCGGGSEEE-CCCCCSSCCCCEEEBCCC-------------CBCTTS----CBCCTTSTTSSSCCSSSSSSSSSB
T ss_pred CchhhcccC-cccccccccCCceeccccccCC----CCcCeeECCCC----CccCHHHcCCCcccCCCCcccccc
Confidence 455677655 3778888999999999876551 33556999988 899999999999999999999874
No 41
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.62 E-value=1.2e-08 Score=84.46 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=32.0
Q ss_pred cCCCCCeeeecC--CCCCceeccCCCccCCCCCCCCCCCCC
Q 031060 75 SACPAGKFYCGN--VGSTPQFIFSSRVNDRICDCCDGSDEY 113 (166)
Q Consensus 75 ~~C~~~~F~C~n--g~~~~~CI~~~~vCDG~~DC~DGSDE~ 113 (166)
..|++.+|+|.+ | .||+..|+|||..||.|||||.
T Consensus 52 ~~C~~~~F~C~~~~g----~CI~~~~~CDG~~DC~DgSDE~ 88 (217)
T 2gtl_M 52 HHCDEHESECRGDVP----ECIHDLLFCDGEKDCRDGSDED 88 (217)
T ss_dssp CCCCTTEEECSSSSC----CEEEGGGTTSSSCCSSSSTTTS
T ss_pred CCCCCCceecCCCCC----cEechhhccCCCCCCCCCCccc
Confidence 359999999975 5 8999999999999999999997
No 42
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.46 E-value=8.5e-08 Score=87.51 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=39.0
Q ss_pred CceEeC-CCCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecCCCCCceecc
Q 031060 42 EVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIF 95 (166)
Q Consensus 42 ~~F~C~-~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~ng~~~~~CI~ 95 (166)
++|+|. +| +||+..|+|||..||.|||||.+ |....+.|... .+||
T Consensus 69 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~~---c~~~~~~C~~~----~~~~ 115 (537)
T 3ojy_B 69 EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEAN---CRRIYKKCQHE----MDQY 115 (537)
T ss_dssp SSEECTTTC-CEECGGGTTSSSCCSSSSCTTSS---CSSCSSCCSSC----CBCC
T ss_pred CccCcCCCC-cEeeccccCCCCCCCCCcccccc---CCCCCCccccC----cCCC
Confidence 799999 78 79999999999999999999998 55556678765 5666
No 43
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.44 E-value=9.3e-08 Score=79.40 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=31.0
Q ss_pred CCCCCeeeec--CCCCCceeccCCCccCCCCCCCCCCCCC
Q 031060 76 ACPAGKFYCG--NVGSTPQFIFSSRVNDRICDCCDGSDEY 113 (166)
Q Consensus 76 ~C~~~~F~C~--ng~~~~~CI~~~~vCDG~~DC~DGSDE~ 113 (166)
.|++.+|+|. ++ .||+..|+|||..||.|||||.
T Consensus 52 ~C~~~eFqC~~~~g----~CIp~~wvCDG~~DC~DGSDE~ 87 (220)
T 2gtl_N 52 HCEKRTFQCGGNEQ----ECISDLLVCDGHKDCHNAHDED 87 (220)
T ss_dssp SSCTTEEECCSSSC----CEEETTTTTSSSCCSTTCTTSC
T ss_pred CCCCCccCcCCCCC----cEeCcceecCCCCCCCCCCccC
Confidence 5889999996 34 8999999999999999999996
No 44
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.41 E-value=1.3e-07 Score=86.84 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=35.6
Q ss_pred CCceEeC-CCCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecC
Q 031060 41 KEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGN 86 (166)
Q Consensus 41 p~~F~C~-~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~n 86 (166)
+++|+|. +| +|||..|+|||..||.|||||.+|...+...+.|..
T Consensus 67 ~~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~~C~~~~~~~~~C~~ 112 (554)
T 3ojy_A 67 GQDFQCKETG-RCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQ 112 (554)
T ss_dssp SSSEECSSSC-CEECGGGTTSSSCCSSSCTTSSSCCSCCCCCTTTTT
T ss_pred CCcCccCCCC-EEcccccccCCcccCCCccccccCCCCCCCcccccc
Confidence 3799999 78 799999999999999999999986433223355644
No 45
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.25 E-value=6.3e-07 Score=81.78 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=29.5
Q ss_pred Ceeeec-CCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 80 GKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 80 ~~F~C~-ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
.+|+|. || +||+..|+|||..||.|||||.+
T Consensus 69 ~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sdE~~ 100 (537)
T 3ojy_B 69 EGFVCAQTG----RCVNRRLLCNGDNDCGDQSDEAN 100 (537)
T ss_dssp SSEECTTTC----CEECGGGTTSSSCCSSSSCTTSS
T ss_pred CccCcCCCC----cEeeccccCCCCCCCCCcccccc
Confidence 799999 87 89999999999999999999986
No 46
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.09 E-value=2e-06 Score=78.97 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=30.3
Q ss_pred CCCCeeeec-CCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 77 CPAGKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 77 C~~~~F~C~-ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
|+ .+|+|. +| +||+..|+|||..||.|||||.+
T Consensus 66 c~-~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sDE~~ 99 (554)
T 3ojy_A 66 CG-QDFQCKETG----RCLKRHLVCNGDQDCLDGSDEDD 99 (554)
T ss_dssp CS-SSEECSSSC----CEECGGGTTSSSCCSSSCTTSSS
T ss_pred CC-CcCccCCCC----EEcccccccCCcccCCCcccccc
Confidence 53 799999 77 89999999999999999999986
No 47
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.58 E-value=2.5e-05 Score=74.90 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=30.1
Q ss_pred CceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060 42 EVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (166)
Q Consensus 42 ~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c 74 (166)
+.|+|.+| +||+..|+|||..||.|+|||.+|
T Consensus 121 ~~F~C~~g-~ci~~~~~c~g~~dC~d~sde~~C 152 (913)
T 3t5o_A 121 NKFRCDSG-RCIARKLECNGENDCGDNSDERDC 152 (913)
T ss_dssp SEEECTTS-CEEEGGGSSSSSCCSSSSGGGTTC
T ss_pred cccccCCC-ceEccceecCCcccCCCccccccC
Confidence 68999998 799999999999999999999885
No 48
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.51 E-value=4.6e-05 Score=73.10 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=29.2
Q ss_pred CeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060 80 GKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (166)
Q Consensus 80 ~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~ 114 (166)
..|+|.+| +||+..|+|||..||.|+|||.+
T Consensus 121 ~~F~C~~g----~ci~~~~~c~g~~dC~d~sde~~ 151 (913)
T 3t5o_A 121 NKFRCDSG----RCIARKLECNGENDCGDNSDERD 151 (913)
T ss_dssp SEEECTTS----CEEEGGGSSSSSCCSSSSGGGTT
T ss_pred cccccCCC----ceEccceecCCcccCCCcccccc
Confidence 67999998 89999999999999999999975
No 49
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=27.09 E-value=36 Score=19.07 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=8.1
Q ss_pred eccCCCccCCCCCCCCC
Q 031060 93 FIFSSRVNDRICDCCDG 109 (166)
Q Consensus 93 CI~~~~vCDG~~DC~DG 109 (166)
|||..|.|-....|..|
T Consensus 1 C~psgq~Cp~~e~CCSG 17 (26)
T 1hvw_A 1 CIPSGQPCPYNENCCSQ 17 (26)
T ss_dssp CBCTTSBCSSTTSBSSC
T ss_pred CccCCCcCCCCcccccc
Confidence 44455555554444433
No 50
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=25.11 E-value=36 Score=18.66 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.5
Q ss_pred cCCCCHHHHHHHhC
Q 031060 152 KIPVNKEDLIERLG 165 (166)
Q Consensus 152 ~~~~~~~~~~~~~~ 165 (166)
-.|+|..|.||||-
T Consensus 8 ekKinfndFIKRLK 21 (24)
T 3si5_X 8 ENKIDFNDFIKRLK 21 (26)
T ss_pred hhhccHHHHHHHHh
Confidence 45788899999985
No 51
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=20.13 E-value=67 Score=19.71 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 031060 2 TMELLRNLIPLMSLCFLVVFV 22 (166)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (166)
.+.+|-.++..++++|+++++
T Consensus 22 ~~~k~gt~~~~~~ll~maif~ 42 (43)
T 1qle_D 22 KGATWVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 455666666666666666654
Done!