BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031062
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
 pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
          Length = 235

 Score = 27.3 bits (59), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 60  PFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHA----AHTIL 115
           PFE+I  D G   ++ L  + C   G HD+  H  +  P   +  +  FHA        +
Sbjct: 93  PFETIELDYG---SQVLWPKHCIQ-GTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAFM 148

Query: 116 ETDQTRLDFEAKKLQSYVKEKSL 138
           E D T +      L  Y+KE+ +
Sbjct: 149 EADHTTM----TGLTGYLKERGI 167


>pdb|3IU1|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
           With Bound Myristoyl-Coa
 pdb|3IU1|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
           With Bound Myristoyl-Coa
 pdb|3IU2|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
           With Bound Myristoyl-Coa And Inhibitor Ddd90096
 pdb|3IU2|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
           With Bound Myristoyl-Coa And Inhibitor Ddd90096
 pdb|3IWE|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
           With Bound Myristoyl-Coa And Inhibitor Ddd85646
 pdb|3IWE|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
           With Bound Myristoyl-Coa And Inhibitor Ddd85646
 pdb|3JTK|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
           With Bound Myristoyl-Coa And Inhibitor Ddd90055
 pdb|3JTK|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
           With Bound Myristoyl-Coa And Inhibitor Ddd90055
          Length = 383

 Score = 27.3 bits (59), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 1   MEETMKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNRE 41
           +   +KQF    +  + E EH  + +  ++++ +V N N E
Sbjct: 240 LTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGE 280


>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N-
           Myristoyltransferase.
 pdb|1RXT|B Chain B, Crystal Structure Of Human Myristoyl-Coa:protein N-
           Myristoyltransferase.
 pdb|1RXT|C Chain C, Crystal Structure Of Human Myristoyl-Coa:protein N-
           Myristoyltransferase.
 pdb|1RXT|D Chain D, Crystal Structure Of Human Myristoyl-Coa:protein N-
           Myristoyltransferase
          Length = 496

 Score = 27.3 bits (59), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 5   MKQFQQNLIEIENEAEHLLFARHQLVESDIVRNGNRE 41
           +KQF    +  + E EH  + +  ++++ +V N N E
Sbjct: 357 LKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGE 393


>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
          Length = 213

 Score = 27.3 bits (59), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 60  PFESIMKDTGGPGTRPLVKEVCTTCGNHDSNEHTWMMFPGTDVFAKIPFHA----AHTIL 115
           PFE+I  D G   ++ L  + C   G HD+  H  +  P   +  +  FHA        +
Sbjct: 70  PFETIELDYG---SQVLWPKHCIQ-GTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAFM 125

Query: 116 ETDQTRLDFEAKKLQSYVKEKSL 138
           E D T +      L  Y+KE+ +
Sbjct: 126 EADHTTM----TGLTGYLKERGI 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,483,276
Number of Sequences: 62578
Number of extensions: 158603
Number of successful extensions: 293
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 19
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)