AmiGO: BLAST Results


BLAST match view associations BLAST with AT2G37220 AT2G37220 AT2G37220	protein from Arabidopsis thaliana	1.4e-32
BLAST match view associations BLAST with CP31B CP31B CP31B AT5G50250	protein from Arabidopsis thaliana	4.1e-17
BLAST match view associations BLAST with RBP31 RBP31 RBP31 AT4G24770	protein from Arabidopsis thaliana	1.4e-15
BLAST match view associations BLAST with CP33 CP33 CP33 AT3G52380	protein from Arabidopsis thaliana	3.3e-14
BLAST match view associations BLAST with AT1G60000 AT1G60000 AT1G60000	protein from Arabidopsis thaliana	1.2e-10
BLAST match view associations BLAST with PSRP2 PSRP2 PSRP2 AT3G52150	protein from Arabidopsis thaliana	2.4e-10
BLAST match view associations BLAST with MGG_01268 MGG_01268 MGG_01268 Nuclear localization sequence binding protein	protein from Magnaporthe oryzae 70-15	1.1e-09
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	1.4e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	6.1e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 RNA binding motif protein 23, isoform CRA_f	protein from Homo sapiens	9.4e-09
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	9.7e-09
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	9.7e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b	protein from Homo sapiens	9.7e-09
BLAST match view associations BLAST with AT2G35410 AT2G35410 AT2G35410	protein from Arabidopsis thaliana	1.1e-08
BLAST match view associations BLAST with rbm38 rbm38 rbm38 RNA binding motif protein 38	gene_product from Danio rerio	1.2e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f	protein from Homo sapiens	1.2e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	1.6e-08
BLAST match view associations BLAST with Rbm24 Rbm24 Rbm24 RNA binding motif protein 24	protein from Mus musculus	1.7e-08
BLAST match view associations BLAST with Rbm24 Rbm24 Rbm24 RNA binding motif protein 24	gene from Rattus norvegicus	1.7e-08
BLAST match view associations BLAST with Rbm39 Rbm39 Rbm39 RNA binding motif protein 39	gene from Rattus norvegicus	1.8e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 Uncharacterized protein	protein from Bos taurus	1.8e-08
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	1.8e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Bos taurus	1.8e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Sus scrofa	1.8e-08
BLAST match view associations BLAST with LOC100858247 LOC100858247 LOC100858247 Uncharacterized protein	protein from Gallus gallus	1.8e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Canis lupus familiaris	1.8e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding protein 39	protein from Homo sapiens	1.8e-08
BLAST match view associations BLAST with Rbm39 Rbm39 Rbm39 RNA binding motif protein 39	protein from Mus musculus	1.8e-08
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	2.0e-08
BLAST match view associations BLAST with CG11266 CG11266 CG11266	protein from Drosophila melanogaster	2.1e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RBM24 protein	protein from Bos taurus	2.2e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Homo sapiens	2.2e-08
BLAST match view associations BLAST with rbm39a rbm39a rbm39a RNA binding motif protein 39a	gene_product from Danio rerio	2.3e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Gallus gallus	2.5e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	2.8e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Uncharacterized protein	protein from Canis lupus familiaris	2.8e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 Uncharacterized protein	protein from Sus scrofa	2.9e-08
BLAST match view associations BLAST with rbm24-b rbm24-b rbm24-b RNA-binding protein 24-B	protein from Xenopus laevis	3.0e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	3.1e-08
BLAST match view associations BLAST with rbm24-a rbm24-a rbm24-a RNA-binding protein 24-A	protein from Xenopus laevis	3.1e-08
BLAST match view associations BLAST with rbm24 rbm24 rbm24 RNA-binding protein 24	protein from Xenopus (Silurana) tropicalis	3.1e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Uncharacterized protein	protein from Sus scrofa	3.4e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	4.3e-08
BLAST match view associations BLAST with rbm24b rbm24b rbm24b RNA binding motif protein 24b	gene_product from Danio rerio	4.3e-08
BLAST match view associations BLAST with Rbm38 Rbm38 Rbm38 RNA binding motif protein 38	protein from Mus musculus	4.9e-08
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	6.3e-08
BLAST match view associations BLAST with Rbm38 Rbm38 Rbm38 RNA binding motif protein 38	gene from Rattus norvegicus	6.5e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.8e-08
BLAST match view associations BLAST with rbm24a rbm24a rbm24a RNA binding motif protein 24a	gene_product from Danio rerio	7.5e-08
BLAST match view associations BLAST with rbm39b rbm39b rbm39b RNA binding motif protein 39b	gene_product from Danio rerio	8.2e-08
BLAST match view associations BLAST with F1M2S4 F1M2S4 F1M2S4 Uncharacterized protein	protein from Rattus norvegicus	8.4e-08
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	8.7e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	1.1e-07
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	1.1e-07
BLAST match view associations BLAST with R06C1.4 R06C1.4 R06C1.4	gene from Caenorhabditis elegans	1.1e-07
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3	gene from Caenorhabditis elegans	1.1e-07
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3 Protein R09B3.3	protein from Caenorhabditis elegans	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.2e-07
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	1.4e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	1.4e-07
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	1.4e-07
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	1.4e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	1.6e-07
BLAST match view associations BLAST with AT5G09880 AT5G09880 AT5G09880	protein from Arabidopsis thaliana	1.7e-07
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	1.8e-07
BLAST match view associations BLAST with CG33714 CG33714 CG33714	protein from Drosophila melanogaster	2.3e-07
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	2.3e-07
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	2.3e-07
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	2.3e-07
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	2.3e-07
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.9e-07
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	2.9e-07
BLAST match view associations BLAST with G5E5V7 G5E5V7 G5E5V7 Uncharacterized protein	protein from Bos taurus	3.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	3.3e-07
BLAST match view associations BLAST with cpf-2 cpf-2 cpf-2	gene from Caenorhabditis elegans	3.5e-07
BLAST match view associations BLAST with orf19.6090 orf19.6090 orf19.6090	gene_product from Candida albicans	3.7e-07
BLAST match view associations BLAST with NSR1 NSR1 NSR1 Potential nuclear localization sequence binding protein Nsr1p	protein from Candida albicans SC5314	3.7e-07
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	3.7e-07
BLAST match view associations BLAST with DDB_G0287335 DDB_G0287335 DDB_G0287335 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	3.8e-07
BLAST match view associations BLAST with DDB_G0275027 DDB_G0275027 DDB_G0275027 SRA stem-loop-interacting RNA-binding protein, mitochondrial	gene from Dictyostelium discoideum	3.8e-07
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031063
        (166 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi...   356  1.4e-32   1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin...   210  4.1e-17   1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370...   198  1.4e-15   1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding...   186  3.3e-14   1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi...   151  1.2e-10   1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-speciﬁc...   148  2.4e-10   1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization...   133  1.1e-09   2
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   139  1.4e-09   1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro...   135  3.6e-09   1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro...   135  3.6e-09   1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ...   135  6.1e-09   1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei...   135  9.4e-09   1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"...   131  9.7e-09   1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   131  9.7e-09   1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ...   138  9.7e-09   1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi...   136  1.1e-08   1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot...   133  1.2e-08   1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1...   138  1.2e-08   1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ...   129  1.6e-08   1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein...   131  1.7e-08   1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"...   131  1.7e-08   1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"...   138  1.8e-08   1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"...   131  1.8e-08   1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"...   131  1.8e-08   1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"...   138  1.8e-08   1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"...   138  1.8e-08   1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p...   138  1.8e-08   1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"...   138  1.8e-08   1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ...   138  1.8e-08   1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein...   138  1.8e-08   1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1...   138  1.8e-08   1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi...   128  2.0e-08   1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ...   138  2.1e-08   1
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"...   130  2.2e-08   1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ...   130  2.2e-08   1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo...   137  2.3e-08   1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ...   128  2.5e-08   1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro...   135  2.8e-08   1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"...   135  2.8e-08   1
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"...   130  2.9e-08   1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24...   128  3.0e-08   1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ...   128  3.1e-08   1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24...   128  3.1e-08   1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ...   128  3.1e-08   1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer...   136  3.1e-08   1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"...   134  3.4e-08   1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ...   128  4.3e-08   1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti...   128  4.3e-08   1
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein...   127  4.9e-08   1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin...   129  6.3e-08   1
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"...   126  6.5e-08   1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi...   123  6.8e-08   1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif...   125  7.5e-08   1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti...   132  8.2e-08   1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein...   123  8.4e-08   1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   122  8.7e-08   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   121  1.1e-07   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   121  1.1e-07   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  1.1e-07   1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  1.1e-07   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  1.1e-07   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  1.1e-07   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  1.1e-07   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  1.1e-07   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  1.1e-07   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   121  1.1e-07   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  1.1e-07   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   121  1.1e-07   1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha...   121  1.1e-07   1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha...   121  1.1e-07   1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci...   121  1.1e-07   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  1.2e-07   1
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote...   129  1.4e-07   1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   120  1.4e-07   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   120  1.4e-07   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   120  1.4e-07   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   120  1.4e-07   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   121  1.6e-07   1
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi...   129  1.7e-07   1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ...   119  1.8e-07   1
FB|FBgn0064117 - symbol:CG33714 species:7227 "Drosophila ...   118  2.3e-07   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   118  2.3e-07   1
UNIPROTKB|J3KQA8 - symbol:HNRNPA1 "Heterogeneous nuclear ...   118  2.3e-07   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   118  2.3e-07   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   118  2.3e-07   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   118  2.3e-07   1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer...   116  2.3e-07   2
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein...   119  2.4e-07   1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   117  2.9e-07   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   117  2.9e-07   1
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein...   123  3.1e-07   1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein...   120  3.2e-07   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   121  3.3e-07   1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd...   123  3.5e-07   1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ...   114  3.7e-07   2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz...   114  3.7e-07   2
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ...   119  3.7e-07   1
DICTYBASE|DDB_G0287335 - symbol:DDB_G0287335 "RNA-binding...   116  3.8e-07   1
DICTYBASE|DDB_G0275027 - symbol:DDB_G0275027 "SRA stem-lo...   116  3.8e-07   1
UNIPROTKB|D4ABW2 - symbol:D4ABW2 "Uncharacterized protein...   121  3.8e-07   1

WARNING:  Descriptions of 767 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 77/103 (74%), Positives = 86/103 (83%)

Query:    60 SSP-SRFVRNVAVSSEFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
             +SP SRF RNVA++SEF+ EED  +D       +FS DLKLFVGNLPF+VDSAQLA LFE
Sbjct:    53 NSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFE 112

Query:   116 TAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
             +AGNVEMV  IYDK+TGRSRGFGFVTMSSV EVEAAAQQFNGY
Sbjct:   113 SAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGY 155

 Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 31/71 (43%), Positives = 42/71 (59%)

Query:    87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
             GS      +++VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT  S +
Sbjct:   197 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQ 256

Query:   145 EVEAAAQQFNG 155
             EV+ A +  +G
Sbjct:   257 EVQNAIKSLDG 267


>TAIR|locus:2157702 [details] [associations]
            symbol:CP31B "chloroplast RNA-binding protein 31B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
            evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
            eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
            ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
            EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
            ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
            PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
            KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
            PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
        Length = 289

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 47/86 (54%), Positives = 59/86 (68%)

Query:    79 EDLLSDEDGSNF-SP--DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSR 133
             ++    EDG  F  P  + KLFVGNLP+ VDS  LA LFE AG VE+  VIY++ T +SR
Sbjct:    95 DESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSR 154

Query:   134 GFGFVTMSSVEEVEAAAQQFNGYVSN 159
             GFGFVTMS+VEE E A ++FN +  N
Sbjct:   155 GFGFVTMSTVEEAEKAVEKFNSFEVN 180

 Score = 143 (55.4 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 31/63 (49%), Positives = 40/63 (63%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             +++VGNLP+ VDS +L  LF   G V    V+ D+ TGRSRGFGFV MS+  EV  A   
Sbjct:   208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267

Query:   153 FNG 155
              +G
Sbjct:   268 LDG 270


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 198 (74.8 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 47/90 (52%), Positives = 60/90 (66%)

Query:    73 SEFDQEEDLLSDE-DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVT 129
             SE D  E  +S+  +    S + KLFVGNL + V+S  LA LFE AG VE+  VIY++ T
Sbjct:   128 SEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRET 187

Query:   130 GRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159
              +SRGFGFVTMSSV+E E A ++FN Y  N
Sbjct:   188 DQSRGFGFVTMSSVDEAETAVEKFNRYDLN 217

 Score = 166 (63.5 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 33/68 (48%), Positives = 45/68 (66%)

Query:    90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
             + P  +++VGNLP+ VD+ +L  LF   G V    V+YD+ TGRSRGFGFVTMS V+E+ 
Sbjct:   240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299

Query:   148 AAAQQFNG 155
              A    +G
Sbjct:   300 EAISALDG 307


>TAIR|locus:2079874 [details] [associations]
            symbol:CP33 "chloroplast RNA-binding protein 33"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
            "ovule development" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
            UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
            EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
            ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
            PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
            KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
            PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
            Uniprot:Q39061
        Length = 329

 Score = 186 (70.5 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 40/88 (45%), Positives = 60/88 (68%)

Query:    71 VSSEFDQ-EEDLLSDEDGSNFSPDL-KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYD 126
             V  E D+ EE++  ++  +  S +  +L+VGNLP+++ S++L+ +F  AG V    ++YD
Sbjct:    91 VEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYD 150

Query:   127 KVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             KVT RSRGFGFVTM S+EE + A Q FN
Sbjct:   151 KVTDRSRGFGFVTMGSIEEAKEAMQMFN 178

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 28/76 (36%), Positives = 41/76 (53%)

Query:    82 LSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVT 139
             + D + S      K++ GNL +++ S  L   F     V    VIY++ TGRSRGFGF++
Sbjct:   207 IRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFIS 266

Query:   140 MSSVEEVEAAAQQFNG 155
               S E V++A    NG
Sbjct:   267 FESAENVQSALATMNG 282


>TAIR|locus:2202740 [details] [associations]
            symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
            EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
            PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
            ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
            EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
            TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
            ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
            Uniprot:Q9ZUJ3
        Length = 258

 Score = 151 (58.2 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 34/89 (38%), Positives = 54/89 (60%)

Query:    69 VAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYD 126
             + V  E ++++D  S       + + KL+ GNLP++VDSA LA + +   N E+V  +Y+
Sbjct:    60 ITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYN 119

Query:   127 KVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
             + TG+SRGF FVTMS+VE+        +G
Sbjct:   120 RDTGQSRGFAFVTMSNVEDCNIIIDNLDG 148

 Score = 148 (57.2 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVGNL ++V S  LAG F   G+V    V++D  TGRSRG+GFV  SS  E+E A + 
Sbjct:   178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237

Query:   153 FNGY 156
              +G+
Sbjct:   238 LDGF 241


>TAIR|locus:2083810 [details] [associations]
            symbol:PSRP2 "plastid-speciﬁc ribosomal protein 2"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
            targeting to chloroplast" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
            EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
            RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
            SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
            EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
            KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
            PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
            Genevestigator:Q8VYM4 Uniprot:Q8VYM4
        Length = 253

 Score = 148 (57.2 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             ++++GN+P +V + QL  L E  G VE   V+YDK +GRSR FGF TM SVE+  A  ++
Sbjct:    77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136

Query:   153 FNG 155
              NG
Sbjct:   137 LNG 139

 Score = 122 (48.0 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 31/76 (40%), Positives = 39/76 (51%)

Query:    81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSR--GFGFV 138
             +L  ED +      K++VGNL  +V    L  LF   G V      +V G S+  GFGFV
Sbjct:   164 VLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFV 223

Query:   139 TMSSVEEVEAAAQQFN 154
             T SS E+VEAA    N
Sbjct:   224 TFSSEEDVEAAIVALN 239


>UNIPROTKB|G4MY43 [details] [associations]
            symbol:MGG_01268 "Nuclear localization sequence binding
            protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
            ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
            KEGG:mgr:MGG_01268 Uniprot:G4MY43
        Length = 486

 Score = 133 (51.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 29/76 (38%), Positives = 43/76 (56%)

Query:    87 GSNFSPDLK-LFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSV 143
             G   SP+   LFVGNLPF  D   +   F     V+ +    ++ +GR +GFG+VT +SV
Sbjct:   334 GDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSV 393

Query:   144 EEVEAAAQQFNGYVSN 159
             E+ ++A +Q NG   N
Sbjct:   394 EDAKSAFEQLNGQSIN 409

 Score = 123 (48.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             LFVGNL ++VD A LA  F+  G V    VI D+ +GRS+GFG+V  ++ EE E A  + 
Sbjct:   241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300

Query:   154 NG 155
              G
Sbjct:   301 QG 302

 Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query:    73 SEFDQEEDLLSDEDGSNFSPD 93
             ++ D + D  SD  GS+ S D
Sbjct:   182 TDSDSDSDSDSDSSGSDSSDD 202

 Score = 36 (17.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query:    67 RNVAVSSEFDQEEDLLSDEDGSNFS 91
             + V VSSE D + D  SD    + S
Sbjct:    51 KKVEVSSESDSDSDA-SDSSSDSDS 74


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/63 (49%), Positives = 38/63 (60%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KL+VGNL + V  A L   F   G V+   V+ D+ TGRSRGFGFV M S +E +AA   
Sbjct:     4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63

Query:   153 FNG 155
              NG
Sbjct:    64 LNG 66


>UNIPROTKB|G3V5Z6 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
            ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
            ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
        Length = 189

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 27/70 (38%), Positives = 43/70 (61%)

Query:    89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEV 146
             N  P ++L+VG+L F++    L G+FE  G ++ ++   D  TGRS+G+GF+T S  E  
Sbjct:     9 NGGP-MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 67

Query:   147 EAAAQQFNGY 156
               A +Q NG+
Sbjct:    68 RRALEQLNGF 77


>UNIPROTKB|H0YJJ3 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
            Uniprot:H0YJJ3
        Length = 214

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 27/70 (38%), Positives = 43/70 (61%)

Query:    89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEV 146
             N  P ++L+VG+L F++    L G+FE  G ++ ++   D  TGRS+G+GF+T S  E  
Sbjct:    34 NGGP-MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 92

Query:   147 EAAAQQFNGY 156
               A +Q NG+
Sbjct:    93 RRALEQLNGF 102


>UNIPROTKB|Q9H0Z9 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA;IDA] [GO:0010830 "regulation of myotube
            differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
            [GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
            response, signal transduction by p53 class mediator resulting in
            cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
            signal transduction by p53 class mediator resulting in
            transcription of p21 class mediator" evidence=IDA] [GO:0007050
            "cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
            of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
            mRNA stabilization" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
            GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
            GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
            HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
            EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
            RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
            ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
            PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
            Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
            KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
            H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
            neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
            EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
            ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
            Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
        Length = 239

 Score = 135 (52.6 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 39/108 (36%), Positives = 56/108 (51%)

Query:    56 QPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLF 114
             QP P +PS  F R +A            S +D + F+   K+FVG LP+    A L   F
Sbjct:     4 QPAPCAPSAGFPRPLAAPGAMHG-----SQKD-TTFT---KIFVGGLPYHTTDASLRKYF 54

Query:   115 ETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
             E  G++E  +VI D+ TG+SRG+GFVTM+     E A +  N  +  +
Sbjct:    55 EGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102


>UNIPROTKB|G3XAP0 [details] [associations]
            symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
            HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
            ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
            ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
        Length = 269

 Score = 135 (52.6 bits), Expect = 9.4e-09, P = 9.4e-09
 Identities = 27/70 (38%), Positives = 43/70 (61%)

Query:    89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEV 146
             N  P ++L+VG+L F++    L G+FE  G ++ ++   D  TGRS+G+GF+T S  E  
Sbjct:    89 NGGP-MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 147

Query:   147 EAAAQQFNGY 156
               A +Q NG+
Sbjct:   148 RRALEQLNGF 157


>UNIPROTKB|A5GFN7 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
            GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
            ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
            ArrayExpress:A5GFN7 Uniprot:A5GFN7
        Length = 193

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 39/108 (36%), Positives = 55/108 (50%)

Query:    56 QPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLF 114
             QP P +PS  F R  A            S +D + F+   K+FVG LP+    A L   F
Sbjct:     4 QPAPCAPSAGFPRPPAAPGAMHG-----SQKD-TTFT---KIFVGGLPYHTTDASLRKYF 54

Query:   115 ETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
             E  G++E  +VI D+ TG+SRG+GFVTM+     E A +  N  +  +
Sbjct:    55 EGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPNIDGR 102


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L+  F   G V    ++ D+V+ RS+GFGFVT +S +E + A  +
Sbjct:    35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query:   153 FNGYVSN 159
             FNG   N
Sbjct:    95 FNGQQLN 101


>UNIPROTKB|E1P5S2 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
            SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
        Length = 373

 Score = 138 (53.6 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:    93 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 152

Query:   152 QFNGY 156
             Q NG+
Sbjct:   153 QLNGF 157


>TAIR|locus:2062379 [details] [associations]
            symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
            "chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
            evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
            "ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
            from plastid promoter" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
            UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
            EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
            ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
            PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
            KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
            InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
            ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
            Uniprot:O82299
        Length = 308

 Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 39/99 (39%), Positives = 57/99 (57%)

Query:    67 RNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSV---DSAQLAGLFETAGNVEMV 123
             +  +   E  QEE     E+  N +   KLFV NLP+S+   D ++L G   T  NVE +
Sbjct:    71 KETSADEETSQEE---KTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVE-I 126

Query:   124 IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY-VSNKL 161
             I  K  G++RGF FVTM+S EE +AA  +F+ + VS ++
Sbjct:   127 IRQK-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRI 164

 Score = 94 (38.1 bits), Expect = 0.00044, P = 0.00044
 Identities = 25/64 (39%), Positives = 34/64 (53%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAG-NV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             KL+V NL +   S  L  LF  A  N     V++    GRS G+GFV+ ++ EE E A  
Sbjct:   195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAIT 254

Query:   152 QFNG 155
             + NG
Sbjct:   255 KLNG 258


>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
            symbol:rbm38 "RNA binding motif protein 38"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
            HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
            ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
            InParanoid:Q7T2V9 Uniprot:Q7T2V9
        Length = 246

 Score = 133 (51.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    A L   FET G+++  +VI D+ TG+SRG+GFVTM      E A + 
Sbjct:    26 KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKD 85

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    86 PNPIIDGR 93


>UNIPROTKB|G3XAC6 [details] [associations]
            symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
            isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
            ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
            ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
        Length = 423

 Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query:   152 QFNGY 156
             Q NG+
Sbjct:   310 QLNGF 314


>UNIPROTKB|F6VZ39 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
            HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
            SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
            Bgee:F6VZ39 Uniprot:F6VZ39
        Length = 123

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    A L   FE  G++E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>MGI|MGI:3610364 [details] [associations]
            symbol:Rbm24 "RNA binding motif protein 24" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
            GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
            GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
            EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
            UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
            Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
            UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
        Length = 236

 Score = 131 (51.2 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    A L   FE  G++E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>RGD|1584029 [details] [associations]
            symbol:Rbm24 "RNA binding motif protein 24" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA;ISO]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
            OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
            UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
            Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
            NextBio:740266 Uniprot:D3ZLP6
        Length = 236

 Score = 131 (51.2 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    A L   FE  G++E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>RGD|1310071 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10116
            "Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
            "centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
            KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
            KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
            RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
            GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
            NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
        Length = 524

 Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query:   152 QFNGY 156
             Q NG+
Sbjct:   310 QLNGF 314


>UNIPROTKB|E1BLB7 [details] [associations]
            symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
            OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
            UniGene:Bt.106613 ProteinModelPortal:E1BLB7
            Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
            NextBio:20876057 Uniprot:E1BLB7
        Length = 239

 Score = 131 (51.2 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 39/108 (36%), Positives = 55/108 (50%)

Query:    56 QPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLF 114
             QP P +PS  F R  A            S +D + F+   K+FVG LP+    A L   F
Sbjct:     4 QPAPCAPSAGFSRPPAAPGAMHG-----SQKD-TTFT---KIFVGGLPYHTTDASLRKYF 54

Query:   115 ETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
             E  G++E  +VI D+ TG+SRG+GFVTM+     E A +  N  +  +
Sbjct:    55 EGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPNIDGR 102


>UNIPROTKB|A5GFN8 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
            HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
            CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
            SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
            GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
        Length = 239

 Score = 131 (51.2 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 39/108 (36%), Positives = 55/108 (50%)

Query:    56 QPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLF 114
             QP P +PS  F R  A            S +D + F+   K+FVG LP+    A L   F
Sbjct:     4 QPAPCAPSAGFPRPPAAPGAMHG-----SQKD-TTFT---KIFVGGLPYHTTDASLRKYF 54

Query:   115 ETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
             E  G++E  +VI D+ TG+SRG+GFVTM+     E A +  N  +  +
Sbjct:    55 EGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPNIDGR 102


>UNIPROTKB|F6QIA5 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
            Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
        Length = 525

 Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query:   152 QFNGY 156
             Q NG+
Sbjct:   310 QLNGF 314


>UNIPROTKB|F2Z5I2 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:CU210870
            Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
        Length = 525

 Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query:   152 QFNGY 156
             Q NG+
Sbjct:   310 QLNGF 314


>UNIPROTKB|E1BRU3 [details] [associations]
            symbol:LOC100858247 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
            IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
        Length = 529

 Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query:   152 QFNGY 156
             Q NG+
Sbjct:   310 QLNGF 314


>UNIPROTKB|E2R4L0 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
            EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
            SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
            KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
        Length = 530

 Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query:   152 QFNGY 156
             Q NG+
Sbjct:   310 QLNGF 314


>UNIPROTKB|Q14498 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
            "centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
            EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
            PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
            RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
            PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
            MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
            PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
            Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
            KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
            GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
            neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
            InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
            GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
            CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
            Uniprot:Q14498
        Length = 530

 Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query:   152 QFNGY 156
             Q NG+
Sbjct:   310 QLNGF 314


>MGI|MGI:2157953 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
            DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
            GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
            EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
            HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
            EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
            IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
            UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
            PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
            STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
            Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
            Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
            GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
            EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
            CleanEx:MM_RBM39 Genevestigator:Q8VH51
            GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
        Length = 530

 Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query:   152 QFNGY 156
             Q NG+
Sbjct:   310 QLNGF 314


>UNIPROTKB|F1MA64 [details] [associations]
            symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
            IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
            SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
            KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
        Length = 530

 Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query:   152 QFNGY 156
             Q NG+
Sbjct:   310 QLNGF 314


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 30/70 (42%), Positives = 41/70 (58%)

Query:    88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EM-VIYDKVTGRSRGFGFVTMSSVEE 145
             S+ SP  KLF+G L +SVD   L   F + G V E+ + YDK +GRSRGFGFV  +   +
Sbjct:    35 SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94

Query:   146 VEAAAQQFNG 155
               +A    +G
Sbjct:    95 ALSAKDAMDG 104


>FB|FBgn0031883 [details] [associations]
            symbol:CG11266 species:7227 "Drosophila melanogaster"
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
            KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
            GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
            RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
            STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
            UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
        Length = 594

 Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 26/71 (36%), Positives = 46/71 (64%)

Query:    88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEE 145
             S+  P ++L+VG+L F++    L G+FE  G ++ +  I D  TGRS+G+GF+T  + ++
Sbjct:   330 SHTGP-MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADD 388

Query:   146 VEAAAQQFNGY 156
              + A +Q NG+
Sbjct:   389 AKKALEQLNGF 399


>UNIPROTKB|A6QPJ1 [details] [associations]
            symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0010830 "regulation of myotube differentiation" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
            GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
            EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
            RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
            Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
            NextBio:20873922 Uniprot:A6QPJ1
        Length = 236

 Score = 130 (50.8 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    A L   FE  G +E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>UNIPROTKB|Q9BX46 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
            EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
            RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
            UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
            IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
            DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
            Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
            UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
            HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
            InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
            GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
            CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
        Length = 236

 Score = 130 (50.8 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    A L   FE  G +E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
            symbol:rbm39a "RNA binding motif protein 39a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
            KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
            IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
            Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
            KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
        Length = 523

 Score = 137 (53.3 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 25/65 (38%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G ++ +  + D  TGRS+G+GF+T S  E  + A +
Sbjct:   246 MRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALE 305

Query:   152 QFNGY 156
             Q NG+
Sbjct:   306 QLNGF 310


>UNIPROTKB|Q5ZJX4 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
            UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
            InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
        Length = 215

 Score = 128 (50.1 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    + L   FE  G++E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>UNIPROTKB|Q86U06 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
            EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
            EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
            IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
            RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
            UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
            ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
            MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
            PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
            Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
            KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
            UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
            HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
            HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
            ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
            NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
            Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
            Uniprot:Q86U06
        Length = 439

 Score = 135 (52.6 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 27/70 (38%), Positives = 43/70 (61%)

Query:    89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEV 146
             N  P ++L+VG+L F++    L G+FE  G ++ ++   D  TGRS+G+GF+T S  E  
Sbjct:   259 NGGP-MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317

Query:   147 EAAAQQFNGY 156
               A +Q NG+
Sbjct:   318 RRALEQLNGF 327


>UNIPROTKB|E2QVA8 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
            Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
        Length = 440

 Score = 135 (52.6 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEA 148
             S  ++L+VG+L F++    L G+FE  G ++ ++   D  TGRS+G+GF+T S  E    
Sbjct:   261 SGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARR 320

Query:   149 AAQQFNGY 156
             A +Q NG+
Sbjct:   321 ALEQLNGF 328


>UNIPROTKB|F1RUJ2 [details] [associations]
            symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0010830 "regulation of myotube differentiation" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
            EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
        Length = 254

 Score = 130 (50.8 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    A L   FE  G +E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    30 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 89

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    90 PNPIIDGR 97


>UNIPROTKB|Q9I8B3 [details] [associations]
            symbol:rbm24-b "RNA-binding protein 24-B" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=ISS]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
            EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
            ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
            CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
        Length = 224

 Score = 128 (50.1 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    + L   FE  G++E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>UNIPROTKB|Q5ZMA3 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
            IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
            ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
            KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
        Length = 225

 Score = 128 (50.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    + L   FE  G++E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>UNIPROTKB|Q6GQD3 [details] [associations]
            symbol:rbm24-a "RNA-binding protein 24-A" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=IMP]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
            UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
            GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
            HOVERGEN:HBG108399 Uniprot:Q6GQD3
        Length = 225

 Score = 128 (50.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    + L   FE  G++E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>UNIPROTKB|Q6P8A7 [details] [associations]
            symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
            (Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
            evidence=ISS] [GO:0043488 "regulation of mRNA stability"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
            GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
            HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
            RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
            SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
            Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
            Bgee:Q6P8A7 Uniprot:Q6P8A7
        Length = 226

 Score = 128 (50.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    + L   FE  G++E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>ASPGD|ASPL0000055210 [details] [associations]
            symbol:AN0917 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
            eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
            OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
            EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
            OMA:YVEFRTI Uniprot:Q5BEW3
        Length = 552

 Score = 136 (52.9 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 33/92 (35%), Positives = 49/92 (53%)

Query:    69 VAVSSEFDQEEDLLSDE--DGSNFS-PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY 125
             +A  +E ++     + E   G+  S P  +L+VGN+ FS+D   L  +FE  G +E V  
Sbjct:   245 IAQLTEAEKNRQARNSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQL 304

Query:   126 DK-VTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
              K  TGRSRG+GFV      +   A ++ NGY
Sbjct:   305 QKDETGRSRGYGFVQFRDPNQAREALEKMNGY 336


>UNIPROTKB|I3LPP8 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
            GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
            Uniprot:I3LPP8
        Length = 423

 Score = 134 (52.2 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 25/65 (38%), Positives = 41/65 (63%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G ++ ++   D  TGRS+G+GF+T S  E    A +
Sbjct:   254 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 313

Query:   152 QFNGY 156
             Q NG+
Sbjct:   314 QLNGF 318


>UNIPROTKB|E1BZ17 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
            myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
            mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
            GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
            IPI:IPI00580084 ProteinModelPortal:E1BZ17
            Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
        Length = 245

 Score = 128 (50.1 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    + L   FE  G++E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>ZFIN|ZDB-GENE-060312-43 [details] [associations]
            symbol:rbm24b "RNA binding motif protein 24b"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
            looping" evidence=IMP] [GO:0072358 "cardiovascular system
            development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
            tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
            muscle tissue development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
            GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
            IPI:IPI00898048 ProteinModelPortal:E9QCG4
            Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
        Length = 245

 Score = 128 (50.1 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 27/68 (39%), Positives = 39/68 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    + L   FE  G +E  +VI D+ TG+SRG+GFVTM+     E A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>MGI|MGI:1889294 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
            [GO:0006978 "DNA damage response, signal transduction by p53 class
            mediator resulting in transcription of p21 class mediator"
            evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
            "cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
            of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
            GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
            GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
            EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
            IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
            ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
            PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
            Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
            KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
            NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
            GermOnline:ENSMUSG00000027510 Uniprot:Q62176
        Length = 237

 Score = 127 (49.8 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 39/107 (36%), Positives = 55/107 (51%)

Query:    56 QPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
             QP   SPS F R  A  S         S +D + F+   K+FVG LP+    A L   FE
Sbjct:     4 QPA-CSPSVFPRPSAAPSAMHG-----SQKD-TTFT---KIFVGGLPYHTTDASLRKYFE 53

Query:   116 TAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
               G++E  +VI D+ TG+SRG+GFVTM+     + A +  N  +  +
Sbjct:    54 GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGR 100


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 129 (50.5 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 29/63 (46%), Positives = 37/63 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G + +S+D   L   F   G V    VI D+ TGRSRGFGFVT +S E   +A Q 
Sbjct:    41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query:   153 FNG 155
              +G
Sbjct:   101 LDG 103


>RGD|1308503 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in transcription of p21 class mediator" evidence=IEA]
            [GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
            regulation of cell proliferation" evidence=IEA] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
            IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
            Uniprot:D3ZGE9
        Length = 237

 Score = 126 (49.4 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    A L   FE  G++E  +VI D+ TG+SRG+GFVTM+     + A + 
Sbjct:    33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    93 PNPIIDGR 100


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNGYV 157
             A    NG V
Sbjct:    63 AMMAMNGKV 71


>ZFIN|ZDB-GENE-040628-1 [details] [associations]
            symbol:rbm24a "RNA binding motif protein 24a"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003228
            "atrial cardiac muscle tissue development" evidence=IMP]
            [GO:0072358 "cardiovascular system development" evidence=IGI]
            [GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
            GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
            ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
            Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
            ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
        Length = 230

 Score = 125 (49.1 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 26/68 (38%), Positives = 39/68 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG LP+    + L   FE  G +E  +VI D+ TG+SRG+GFVTM+     + A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71

Query:   153 FNGYVSNK 160
              N  +  +
Sbjct:    72 PNPIIDGR 79


>ZFIN|ZDB-GENE-050327-97 [details] [associations]
            symbol:rbm39b "RNA binding motif protein 39b"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
            GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
            EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
            UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
            GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
            OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
        Length = 539

 Score = 132 (51.5 bits), Expect = 8.2e-08, P = 8.2e-08
 Identities = 24/65 (36%), Positives = 42/65 (64%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L F++    L G+FE  G +E   ++ D  TGRS+G+GF++ +  E  + A +
Sbjct:   264 MRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALE 323

Query:   152 QFNGY 156
             Q NG+
Sbjct:   324 QLNGF 328


>UNIPROTKB|F1M2S4 [details] [associations]
            symbol:F1M2S4 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
            ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
        Length = 208

 Score = 123 (48.4 bits), Expect = 8.4e-08, P = 8.4e-08
 Identities = 32/75 (42%), Positives = 42/75 (56%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             LKLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA  
Sbjct:     7 LKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66

Query:   152 QFNGYVSNKL-SPKK 165
                  V  ++  PK+
Sbjct:    67 ARPHKVDGRVVEPKR 81


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:    93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
             + + FVG L ++ D   L   F   G+V    +I D+ TGRSRGFGFVT +S E +  A 
Sbjct:     5 EYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAI 64

Query:   151 QQFNG 155
             +  NG
Sbjct:    65 EAMNG 69


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/63 (42%), Positives = 36/63 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG L F  D   L  +F   G ++  +V+ D+ T RSRGFGFVT  + E+ + A   
Sbjct:     7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66

Query:   153 FNG 155
              NG
Sbjct:    67 MNG 69


>WB|WBGene00011059 [details] [associations]
            symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
            EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
            SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
            GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
            WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
            Uniprot:O62337
        Length = 84

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/71 (35%), Positives = 36/71 (50%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
             S    ++VGN+P+     ++   F   G+V  V  +YD+ TGR RGF FV  S     + 
Sbjct:     3 SQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQR 62

Query:   149 AAQQFNGYVSN 159
             A +Q NG   N
Sbjct:    63 AVEQLNGVAFN 73


>WB|WBGene00011156 [details] [associations]
            symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
            RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
            IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
            GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
            WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
            Uniprot:O45713
        Length = 85

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/62 (41%), Positives = 32/62 (51%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             ++VGN PF      L   F  AGNV  V  + D+ TGR RGF FV  +     + A  QF
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:   154 NG 155
             NG
Sbjct:    66 NG 67


>UNIPROTKB|O45713 [details] [associations]
            symbol:R09B3.3 "Protein R09B3.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
            SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
            EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
            UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
            OMA:KRVHIPT NextBio:878159 Uniprot:O45713
        Length = 85

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/62 (41%), Positives = 32/62 (51%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             ++VGN PF      L   F  AGNV  V  + D+ TGR RGF FV  +     + A  QF
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:   154 NG 155
             NG
Sbjct:    66 NG 67


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 121 (47.7 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>POMBASE|SPAC328.05 [details] [associations]
            symbol:SPAC328.05 "RNA-binding protein involved in export
            of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
            "cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
            nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
            OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
            EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
            Uniprot:Q9P3U1
        Length = 464

 Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 31/73 (42%), Positives = 41/73 (56%)

Query:    83 SDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMS 141
             +  +G +  PD +LFVGNLP++V    L  LF  AG+V    I     GRSRG G V MS
Sbjct:   168 ASSNGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMS 227

Query:   142 SVEEVEAAAQQFN 154
             S++E   A Q  +
Sbjct:   228 SMKEAMHAIQMLH 240

 Score = 106 (42.4 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             ++VGNLP++     L  LF   G+V    + Y+  TGRS+GFG V   +  +  ++ ++ 
Sbjct:   312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370

Query:   154 NGY 156
             NGY
Sbjct:   371 NGY 373


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F+ D   L   F + G +   +V+ D+ T RSRGFGF+T ++ E    
Sbjct:     3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62

Query:   149 AAQQFNG 155
             A +  NG
Sbjct:    63 AMRAMNG 69


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 121 (47.7 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>TAIR|locus:2178198 [details] [associations]
            symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
            IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
            ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
            EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
            TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
            ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
        Length = 527

 Score = 129 (50.5 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 37/102 (36%), Positives = 51/102 (50%)

Query:    56 QPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
             QP+   PS   +N+A S+         S   G     D KL+VGNL F++   QL  +FE
Sbjct:   236 QPVMVKPSEAEKNLAQSN---------STTVGGTGPADRKLYVGNLHFNMSELQLRQIFE 286

Query:   116 TAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
               G VE+V    D  TG+ +GFGF+    +E  +AA    NG
Sbjct:   287 AFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNG 328


>UNIPROTKB|F8W646 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
            ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
            Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
            Uniprot:F8W646
        Length = 156

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>FB|FBgn0064117 [details] [associations]
            symbol:CG33714 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
            GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
            RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
            EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
            GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
            FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
            NextBio:854180 Uniprot:Q0KHQ1
        Length = 90

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVE 147
             ++FVGNLP++V   +L G F   G V    VI+DK TG S+G+GFV+ +S+  +E
Sbjct:    16 RIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALE 70


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F+ D   L   F + G +   +V+ D+ T RSRGFGF+T ++ E    
Sbjct:     3 SEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62

Query:   149 AAQQFNG 155
             A +  NG
Sbjct:    63 AMRAMNG 69


>UNIPROTKB|J3KQA8 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
        Length = 102

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F+ D   L   F + G +   +V+ D+ T RSRGFGF+T ++ E    
Sbjct:     3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62

Query:   149 AAQQFNG 155
             A +  NG
Sbjct:    63 AMRAMNG 69


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F+ D   L   F + G +   +V+ D+ T RSRGFGF+T ++ E    
Sbjct:     3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62

Query:   149 AAQQFNG 155
             A +  NG
Sbjct:    63 AMRAMNG 69


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F+ D   L   F + G +   +V+ D+ T RSRGFGF+T ++ E    
Sbjct:     3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62

Query:   149 AAQQFNG 155
             A +  NG
Sbjct:    63 AMRAMNG 69


>ASPGD|ASPL0000076731 [details] [associations]
            symbol:AN4865 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
            KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
            ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
            EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
            HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
        Length = 524

 Score = 116 (45.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 29/72 (40%), Positives = 39/72 (54%)

Query:    87 GSNFSPDLK-LFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSV 143
             G   SP+   LFVGNLPFS +   +  +F   GNV  +    D  +GR +GFG+V  SSV
Sbjct:   376 GDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSV 435

Query:   144 EEVEAAAQQFNG 155
             +E   A  +  G
Sbjct:   436 DEARKAYNELQG 447

 Score = 94 (38.1 bits), Expect = 0.00096, P = 0.00096
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query:    76 DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRG 134
             ++E    S +  +       LFVGNL ++V    L   FE  G +   ++ ++ TGRSRG
Sbjct:   259 EEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRG 318

Query:   135 FGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165
             FG+V  ++  +   AA+ +     +++  +K
Sbjct:   319 FGYVEFTNAAD---AAKAYEAMKEHEIDGRK 346

 Score = 33 (16.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query:    56 QPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLK 95
             +P PSS S         SE + E D  S E  S     +K
Sbjct:    62 EPTPSSSSES------ESESESESDSSSSESESEDEKPVK 95


>UNIPROTKB|F1M5N1 [details] [associations]
            symbol:F1M5N1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
            ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
        Length = 207

 Score = 119 (46.9 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    71 RPHKVDGRVVEPKR 84


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 27/67 (40%), Positives = 37/67 (55%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F+ D   L   F + G +   +V+ D+ T RSRGFGF+T +  E    
Sbjct:     3 SEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASD 62

Query:   149 AAQQFNG 155
             A +  NG
Sbjct:    63 AMRAMNG 69


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 27/63 (42%), Positives = 36/63 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG L +  D + L   F + G V    VI D+ TGRSRGFGFV+ S  +    A ++
Sbjct:    36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95

Query:   153 FNG 155
              +G
Sbjct:    96 MDG 98


>UNIPROTKB|G5E5V7 [details] [associations]
            symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
            export" evidence=IEA] [GO:0045111 "intermediate filament
            cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
            Uniprot:G5E5V7
        Length = 319

 Score = 123 (48.4 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 33/76 (43%), Positives = 44/76 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA--- 150
             KLF+G L F      L   FE  G + + V+ D  T RSRGFGFVT ++VEEV+AA    
Sbjct:    24 KLFIGGLSFETTDESLRSHFEQWGMLTDCVVMDPNTKRSRGFGFVTYTTVEEVDAAMNAR 83

Query:   151 -QQFNGYVSNKLSPKK 165
              Q+ +G V   + PK+
Sbjct:    84 PQKMDGRV---VEPKR 96


>UNIPROTKB|D4A491 [details] [associations]
            symbol:D4A491 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            IPI:IPI00560785 ProteinModelPortal:D4A491
            Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
        Length = 239

 Score = 120 (47.3 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 31/74 (41%), Positives = 42/74 (56%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:     8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67

Query:   153 FNGYVSNKL-SPKK 165
                 V+ ++  PK+
Sbjct:    68 RPHKVNGRVVEPKR 81


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 121 (47.7 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>WB|WBGene00000774 [details] [associations]
            symbol:cpf-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
            interference" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
            vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
            GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
            RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
            DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
            PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
            GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
            WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
            NextBio:893824 Uniprot:O45577
        Length = 336

 Score = 123 (48.4 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             +FVGN+ + V    +  +F  AGNV  +  ++D+ TG+ +G+GF+    ++  E A +  
Sbjct:    20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79

Query:   154 NGY 156
             NGY
Sbjct:    80 NGY 82


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 114 (45.2 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 29/96 (30%), Positives = 48/96 (50%)

Query:    62 PSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV- 120
             PS+  +  A  S+ ++   +   +  ++      LFVG L +++D A L   FE  G V 
Sbjct:   138 PSK--KRKAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVI 195

Query:   121 -EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
                VI ++ TG+SRG+G+V   S    E A ++  G
Sbjct:   196 GARVIMERATGKSRGYGYVDFESKSAAEKALEEMQG 231

 Score = 107 (42.7 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query:    88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEE 145
             S   P   LF+GNL F+ +   L  +F   GNV    V     T + +GFG+V  SSV+E
Sbjct:   264 SQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDE 323

Query:   146 VEAAAQQFNG-YVSNK 160
              +AA +  NG Y+  +
Sbjct:   324 AKAALEAMNGEYIEGR 339

 Score = 37 (18.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query:    72 SSEFDQEEDLLSDEDGSNFSPDLK 95
             SSE D + D  SD D S   P  K
Sbjct:   119 SSESDSDSDSDSDSD-SEEEPSKK 141

 Score = 34 (17.0 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query:    72 SSEFDQEEDLLSDEDGSNFS 91
             SS+    E+  SD+D S+ S
Sbjct:    33 SSDDSSSEESSSDDDSSDDS 52

 Score = 32 (16.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 8/22 (36%), Positives = 9/22 (40%)

Query:    72 SSEFDQEEDLLSDEDGSNFSPD 93
             SS  D E+   SD   S    D
Sbjct:   104 SSSSDSEDSSSSDSSSSESDSD 125

 Score = 32 (16.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query:    72 SSEFDQEEDLLSDEDGSNFSPD 93
             SSE    +D  SD+  S+ S +
Sbjct:    38 SSEESSSDDDSSDDSSSSSSDE 59


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 114 (45.2 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 29/96 (30%), Positives = 48/96 (50%)

Query:    62 PSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV- 120
             PS+  +  A  S+ ++   +   +  ++      LFVG L +++D A L   FE  G V 
Sbjct:   138 PSK--KRKAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVI 195

Query:   121 -EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
                VI ++ TG+SRG+G+V   S    E A ++  G
Sbjct:   196 GARVIMERATGKSRGYGYVDFESKSAAEKALEEMQG 231

 Score = 107 (42.7 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query:    88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEE 145
             S   P   LF+GNL F+ +   L  +F   GNV    V     T + +GFG+V  SSV+E
Sbjct:   264 SQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDE 323

Query:   146 VEAAAQQFNG-YVSNK 160
              +AA +  NG Y+  +
Sbjct:   324 AKAALEAMNGEYIEGR 339

 Score = 37 (18.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query:    72 SSEFDQEEDLLSDEDGSNFSPDLK 95
             SSE D + D  SD D S   P  K
Sbjct:   119 SSESDSDSDSDSDSD-SEEEPSKK 141

 Score = 34 (17.0 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query:    72 SSEFDQEEDLLSDEDGSNFS 91
             SS+    E+  SD+D S+ S
Sbjct:    33 SSDDSSSEESSSDDDSSDDS 52

 Score = 32 (16.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 8/22 (36%), Positives = 9/22 (40%)

Query:    72 SSEFDQEEDLLSDEDGSNFSPD 93
             SS  D E+   SD   S    D
Sbjct:   104 SSSSDSEDSSSSDSSSSESDSD 125

 Score = 32 (16.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query:    72 SSEFDQEEDLLSDEDGSNFSPD 93
             SSE    +D  SD+  S+ S +
Sbjct:    38 SSEESSSDDDSSDDSSSSSSDE 59


>UNIPROTKB|F8VZ49 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
            HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
            ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
            Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
            Uniprot:F8VZ49
        Length = 231

 Score = 119 (46.9 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    94 RPHKVDGRVVEPKR 107


>DICTYBASE|DDB_G0287335 [details] [associations]
            symbol:DDB_G0287335 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
            ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
            GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
            InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
            Uniprot:Q54KH9
        Length = 91

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 29/69 (42%), Positives = 37/69 (53%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FV  LP+SV    L   F   G++    V+ DKVT RSRGFGFVT    + V+ A + 
Sbjct:     4 KIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAMEA 63

Query:   153 FNGYVSNKL 161
              N     KL
Sbjct:    64 ENEMGGRKL 72


>DICTYBASE|DDB_G0275027 [details] [associations]
            symbol:DDB_G0275027 "SRA stem-loop-interacting
            RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
            discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
            ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
            ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
            GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
            Uniprot:Q86I71
        Length = 91

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 29/69 (42%), Positives = 37/69 (53%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FV  LP+SV    L   F   GN++   V+ D+VT RS+GFGFV   S E V+ A   
Sbjct:     5 KIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINS 64

Query:   153 FNGYVSNKL 161
              N     KL
Sbjct:    65 DNEINGRKL 73


>UNIPROTKB|D4ABW2 [details] [associations]
            symbol:D4ABW2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
            Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
        Length = 279

 Score = 121 (47.7 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 36/90 (40%), Positives = 50/90 (55%)

Query:    82 LSDEDGSNFSPDL-KLFVGNLPF--SVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFG 136
             +S  + S     L KLFVG L F  +++S  L   FE  G +   +V+ D  T RSRGFG
Sbjct:     1 MSKSESSKEPEQLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFG 60

Query:   137 FVTMSSVEEVEAAAQQFNGYVSNK-LSPKK 165
             FVT ++VEEV+AA       V  + + PK+
Sbjct:    61 FVTYATVEEVDAAMNARPHKVGGRAVEPKR 90


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 121 (47.7 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + 
Sbjct:     3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    63 AMMAMNG 69


>UNIPROTKB|J3KTC1 [details] [associations]
            symbol:MSI2 "RNA-binding protein Musashi homolog 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
            EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
        Length = 141

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 31/88 (35%), Positives = 42/88 (47%)

Query:    80 DLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGF 137
             DL S      FSP  K+F+G L +      L   F   G +   MV+ D  T RSRGFGF
Sbjct:     3 DLTSVLTSVMFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 62

Query:   138 VTMSSVEEVEAAAQQFNGYVSNK-LSPK 164
             VT +    V+    Q +  + +K + PK
Sbjct:    63 VTFADPASVDKVLGQPHHELDSKTIDPK 90


>UNIPROTKB|Q8EK89 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 29/70 (41%), Positives = 39/70 (55%)

Query:    85 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSS 142
             +D     P + L+VGNLP+ V   ++  LF   G V  V  + D+ TGR +GFGFV MS 
Sbjct:    55 DDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMS- 113

Query:   143 VEEVEAAAQQ 152
                 EA AQ+
Sbjct:   114 ----EAGAQK 119


>TIGR_CMR|SO_0208 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 29/70 (41%), Positives = 39/70 (55%)

Query:    85 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSS 142
             +D     P + L+VGNLP+ V   ++  LF   G V  V  + D+ TGR +GFGFV MS 
Sbjct:    55 DDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMS- 113

Query:   143 VEEVEAAAQQ 152
                 EA AQ+
Sbjct:   114 ----EAGAQK 119


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 30/64 (46%), Positives = 38/64 (59%)

Query:    95 KLFVGNL-PFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             +++VGNL P + D   L   F   GNV   +V+ D+ T RSRGFGFVT SS  E EAA  
Sbjct:     4 RVYVGNLSPTTTDD-MLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62

Query:   152 QFNG 155
               +G
Sbjct:    63 GMDG 66


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 27/63 (42%), Positives = 34/63 (53%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L +  D A L   F   G+V    VI D+ TGRSRGFGFV  +      AA  +
Sbjct:    36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95

Query:   153 FNG 155
              +G
Sbjct:    96 MDG 98


>UNIPROTKB|D4AD23 [details] [associations]
            symbol:D4AD23 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
            ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
        Length = 313

 Score = 121 (47.7 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 34/77 (44%), Positives = 44/77 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAA-- 150
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   151 --QQFNGYVSNKLSPKK 165
               Q+ NG V   + PK+
Sbjct:    75 RPQKVNGRV---VEPKR 88


>UNIPROTKB|D4ACJ8 [details] [associations]
            symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
            ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
        Length = 268

 Score = 119 (46.9 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KL VG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + A   
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   153 FNG 155
              NG
Sbjct:    67 MNG 69


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KL VG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + A   
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   153 FNG 155
              NG
Sbjct:    67 MNG 69


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLF+G L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  + ++ + 
Sbjct:     2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    62 AMMAMNG 68


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLFVG L F+ D   L   F + G +   +V+ D+ T RSRGFGF+T ++ E    
Sbjct:     3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62

Query:   149 AAQQFNG 155
               +  NG
Sbjct:    63 VMRAMNG 69


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 114 (45.2 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KL VG L F  +   L  +F   G +   +V+ D+ T RSRGFGFVT  ++++ + A   
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   153 FNG 155
              NG
Sbjct:    67 MNG 69


>UNIPROTKB|H0YHB7 [details] [associations]
            symbol:MSI1 "RNA-binding protein Musashi homolog 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
        Length = 233

 Score = 117 (46.2 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G V+  M+++DK T R RGFGFVT  S + VE   + 
Sbjct:    42 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 101

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   102 HFHEINNKMVECKK 115


>UNIPROTKB|C9JAA9 [details] [associations]
            symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010655
            EMBL:AC018635 HGNC:HGNC:21863 ChiTaRS:RBM28 IPI:IPI00945927
            ProteinModelPortal:C9JAA9 SMR:C9JAA9 STRING:C9JAA9
            Ensembl:ENST00000478061 ArrayExpress:C9JAA9 Bgee:C9JAA9
            Uniprot:C9JAA9
        Length = 283

 Score = 119 (46.9 bits), Expect = 6.6e-07, P = 6.6e-07
 Identities = 33/78 (42%), Positives = 43/78 (55%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             L LFVG LP S  S QL  LF   G V+   V+ +K +   RGFG+VT S +E+V+ A +
Sbjct:     4 LTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 63

Query:   152 Q---FNGYVSNKLSPKKK 166
             +   F G   N    KKK
Sbjct:    64 EITTFEGCKINVTVAKKK 81


>UNIPROTKB|Q32P51 [details] [associations]
            symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
            A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
            EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
            IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
            UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
            IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
            PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
            Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
            KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
            HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
            HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
            OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
            Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
            Uniprot:Q32P51
        Length = 320

 Score = 120 (47.3 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 TPHKVDGRVVEPKR 88


>UNIPROTKB|D4A2D2 [details] [associations]
            symbol:D4A2D2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            IPI:IPI00559583 ProteinModelPortal:D4A2D2
            Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
        Length = 262

 Score = 118 (46.6 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA
Sbjct:    15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAA 71


>UNIPROTKB|Q9HCJ3 [details] [associations]
            symbol:RAVER2 "Ribonucleoprotein PTB-binding 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG135032
            HOGENOM:HOG000253941 HOVERGEN:HBG059515 EMBL:AB046799 EMBL:BC065303
            EMBL:AL359613 IPI:IPI00397768 IPI:IPI00556565 PIR:T50631
            RefSeq:NP_060681.2 UniGene:Hs.591443 PDB:1WG1 PDBsum:1WG1
            ProteinModelPortal:Q9HCJ3 SMR:Q9HCJ3 PhosphoSite:Q9HCJ3
            DMDM:67466983 PRIDE:Q9HCJ3 Ensembl:ENST00000294428
            Ensembl:ENST00000371072 GeneID:55225 KEGG:hsa:55225 UCSC:uc001dbs.2
            UCSC:uc001dbt.2 CTD:55225 GeneCards:GC01P065210 HGNC:HGNC:25577
            HPA:HPA045785 MIM:609953 neXtProt:NX_Q9HCJ3 PharmGKB:PA144596391
            InParanoid:Q9HCJ3 OMA:HLMNPSI EvolutionaryTrace:Q9HCJ3
            GenomeRNAi:55225 NextBio:59216 ArrayExpress:Q9HCJ3 Bgee:Q9HCJ3
            CleanEx:HS_RAVER2 Genevestigator:Q9HCJ3 GermOnline:ENSG00000162437
            Uniprot:Q9HCJ3
        Length = 691

 Score = 92 (37.4 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query:    93 DLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFV 138
             D  L + N+P S  S +   L    GN+E   ++Y +VTG S+G+GFV
Sbjct:   141 DALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFV 188

 Score = 37 (18.1 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query:   134 GFGFVTMSSVEEVEAAAQQFNG 155
             GF  V  S+ E+ E   Q  +G
Sbjct:   273 GFAVVEYSTAEQAEEVQQAADG 294

 Score = 36 (17.7 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query:    66 VRNVAVSSEFDQEEDLLSDED 86
             V+N+   S   +  DLL D D
Sbjct:    73 VKNLPQDSNCQEVHDLLKDYD 93


>UNIPROTKB|F8VXY0 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
            Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
            Uniprot:F8VXY0
        Length = 304

 Score = 119 (46.9 bits), Expect = 7.7e-07, P = 7.7e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|F8VSB5 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
            Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
            Uniprot:F8VSB5
        Length = 306

 Score = 119 (46.9 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLF+G L F  +   L   F   G +   +V+ D+ T RSRGFGFVT  +V++ + 
Sbjct:     2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    62 AMMAMNG 68


>UNIPROTKB|Q48A10 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
            STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 36/99 (36%), Positives = 50/99 (50%)

Query:    58 LPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETA 117
             L  SPS    N A S+       + SDED         L+VGNLP+  +   +  LF   
Sbjct:    47 LTGSPST---NTASSTS---SNTIASDEDVRT------LYVGNLPYRANETSVRELFSEH 94

Query:   118 GNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             G+V  V  + DK TG+ RGFGFV M+S ++++ A    N
Sbjct:    95 GSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAISALN 132


>TIGR_CMR|CPS_0338 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
            RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
            GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 36/99 (36%), Positives = 50/99 (50%)

Query:    58 LPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETA 117
             L  SPS    N A S+       + SDED         L+VGNLP+  +   +  LF   
Sbjct:    47 LTGSPST---NTASSTS---SNTIASDEDVRT------LYVGNLPYRANETSVRELFSEH 94

Query:   118 GNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             G+V  V  + DK TG+ RGFGFV M+S ++++ A    N
Sbjct:    95 GSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAISALN 132


>WB|WBGene00006321 [details] [associations]
            symbol:sup-12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
            "regulation of actin cytoskeleton organization" evidence=IGI]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
            binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
            intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
            complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
            GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 117 (46.2 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query:    87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVE 144
             GS  +   K+FVG LP+      L   FE  G++E  +VI D+ T +SRG+GFVTM    
Sbjct:    28 GSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRA 87

Query:   145 EVEAAAQQFNGYVSNK 160
               E A +  N  +  +
Sbjct:    88 SAERACKDPNPIIDGR 103


>UNIPROTKB|O45189 [details] [associations]
            symbol:sup-12 "Protein SUP-12, isoform a" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
            Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
            GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 117 (46.2 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query:    87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVE 144
             GS  +   K+FVG LP+      L   FE  G++E  +VI D+ T +SRG+GFVTM    
Sbjct:    28 GSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRA 87

Query:   145 EVEAAAQQFNGYVSNK 160
               E A +  N  +  +
Sbjct:    88 SAERACKDPNPIIDGR 103


>UNIPROTKB|F8VRQ1 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
            Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
            Uniprot:F8VRQ1
        Length = 307

 Score = 119 (46.9 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|P09867 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
            GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
            RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
            SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
            GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
            OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
        Length = 320

 Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|F8W6I7 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
            Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
            Uniprot:F8W6I7
        Length = 320

 Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|Q06A94 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
            EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
            SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
            Uniprot:Q06A94
        Length = 320

 Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|A5A6H4 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
            GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
            EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
            RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
            UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
            Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
            GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
            CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
            Uniprot:A5A6H4
        Length = 320

 Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>MGI|MGI:104820 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
            import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
            EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
            EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
            EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
            EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
            IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
            UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
            IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
            PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
            UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
            Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
            GermOnline:ENSMUSG00000058922 Uniprot:P49312
        Length = 320

 Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>RGD|69234 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
           species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
           evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
           spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
           evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
           [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
           evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
           evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
           "cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
           evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
           [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
           "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
           "intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
           transport" evidence=IEA] [GO:0051168 "nuclear export"
           evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
           [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
           InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
           SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
           GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
           GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
           GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
           HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
           CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
           UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
           STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
           KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
           Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
        Length = 320

 Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|Q5I0M7 [details] [associations]
            symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
            UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
            Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
        Length = 320

 Score = 119 (46.9 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|F1P5I0 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
        Length = 288

 Score = 118 (46.6 bits), Expect = 8.9e-07, P = 8.9e-07
 Identities = 32/74 (43%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA   
Sbjct:    10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    70 RPHKVDGRVVEPKR 83


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 118 (46.6 bits), Expect = 8.9e-07, P = 8.9e-07
 Identities = 27/59 (45%), Positives = 33/59 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             K+FVG + +S D   L   F   G V    +I D+ TGRSRGF FVT +S EE   A Q
Sbjct:    35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93


>UNIPROTKB|F8W1S7 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
            Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
            Uniprot:F8W1S7
        Length = 330

 Score = 119 (46.9 bits), Expect = 9.1e-07, P = 9.1e-07
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>TAIR|locus:2044370 [details] [associations]
            symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
            IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
            ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
            EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
            TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
            Genevestigator:Q501B0 Uniprot:Q501B0
        Length = 336

 Score = 119 (46.9 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 30/81 (37%), Positives = 40/81 (49%)

Query:    85 EDGSNFSPDLKL---FVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVT 139
             E G+N + D KL   FVG L +      +   FE  G +   +VI DK TGRS+G+GFVT
Sbjct:    10 EGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 69

Query:   140 MSSVEEVEAAAQQFNGYVSNK 160
                 E    A Q  N  +  +
Sbjct:    70 FKEAEAAMRACQNMNPVIDGR 90


>UNIPROTKB|D4A988 [details] [associations]
            symbol:Rbms2 "Protein Rbms2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 RGD:1304813 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567496
            Ensembl:ENSRNOT00000004137 ArrayExpress:D4A988 Uniprot:D4A988
        Length = 352

 Score = 119 (46.9 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 27/64 (42%), Positives = 35/64 (54%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L G+ +  G V    I    TG SRG GF  M S E+ EA    FN
Sbjct:   135 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTTGASRGVGFARMESTEKCEAIITHFN 194

Query:   155 G-YV 157
             G Y+
Sbjct:   195 GKYI 198


>UNIPROTKB|F1NBB6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
        Length = 310

 Score = 118 (46.6 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 32/74 (43%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA   
Sbjct:    22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 81

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    82 RPHKVDGRVVEPKR 95


>UNIPROTKB|P09651 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
            "single-stranded RNA binding" evidence=IC] [GO:0005654
            "nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
            [GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
            export" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
            filament cytoskeleton" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
            GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
            Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
            Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
            GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
            GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
            EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
            EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
            EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
            IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
            RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
            UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
            PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
            PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
            PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
            PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
            PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
            ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
            MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
            SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
            Ensembl:ENST00000340913 Ensembl:ENST00000546500
            Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
            KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
            GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
            H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
            MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
            InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
            ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
            GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
            CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
            Uniprot:P09651
        Length = 372

 Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|E2QYP1 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
            ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
            NextBio:20853043 Uniprot:E2QYP1
        Length = 373

 Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|D4ACJ7 [details] [associations]
            symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
            EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
            OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
            Uniprot:D4ACJ7
        Length = 373

 Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>RGD|1304813 [details] [associations]
            symbol:Rbms2 "RNA binding motif, single stranded interacting
            protein 2" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1304813 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH474104 GeneTree:ENSGT00630000089747
            eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108 CTD:5939
            OMA:SQQMAPP EMBL:BC097377 IPI:IPI00371268 RefSeq:NP_001020574.1
            UniGene:Rn.162925 SMR:Q4QR81 Ensembl:ENSRNOT00000048848
            GeneID:288771 KEGG:rno:288771 UCSC:RGD:1304813 InParanoid:Q4QR81
            NextBio:628683 Genevestigator:Q4QR81 Uniprot:Q4QR81
        Length = 379

 Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/64 (42%), Positives = 35/64 (54%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L G+ +  G V    I    TG SRG GF  M S E+ EA    FN
Sbjct:   135 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTTGASRGVGFARMESTEKCEAIITHFN 194

Query:   155 G-YV 157
             G Y+
Sbjct:   195 GKYI 198


>UNIPROTKB|F1LUF2 [details] [associations]
            symbol:F1LUF2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074566 IPI:IPI00952415
            Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
        Length = 238

 Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RS GFGFVT ++VEEV+AA  +
Sbjct:     1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60

Query:   153 FNGYVSNK-LSPKK 165
                 V  + L PK+
Sbjct:    61 RPHKVDERVLEPKR 74


>UNIPROTKB|F1Q3G7 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
            GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
            GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
            Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
        Length = 384

 Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 95

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    96 RPHKVDGRVVEPKR 109


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG L F      L  +F   G V   +V+ D+ + RSRGFGFVT  + E+ + A   
Sbjct:     7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query:   153 FNG 155
              NG
Sbjct:    67 MNG 69


>UNIPROTKB|F1MY46 [details] [associations]
            symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
            TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
            UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
        Length = 463

 Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             ++L+VG+L  ++    L G+ E  G ++ ++   D  TGRS+G+GF+T S  E    A +
Sbjct:   278 VRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALE 337

Query:   152 QFNGY 156
             Q NG+
Sbjct:   338 QLNGF 342


>ZFIN|ZDB-GENE-030912-14 [details] [associations]
            symbol:hnrnpa1 "heterogeneous nuclear
            ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
            HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
            RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
            SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
            InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
            Uniprot:Q803K3
        Length = 422

 Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 32/74 (43%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT SSV+EV A+   
Sbjct:    34 KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDA 93

Query:   153 FNGYVSNKL-SPKK 165
                 V  +L  PK+
Sbjct:    94 RPHKVDGRLVEPKR 107


>RGD|2321074 [details] [associations]
            symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
            PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
            ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
        Length = 320

 Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 29/57 (50%), Positives = 34/57 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92


>UNIPROTKB|E7EWI9 [details] [associations]
            symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
            ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
            SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
            Uniprot:E7EWI9
        Length = 322

 Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 29/57 (50%), Positives = 34/57 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA
Sbjct:    14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 70


>ZFIN|ZDB-GENE-040426-2698 [details] [associations]
            symbol:zgc:56304 "zgc:56304" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2698 GO:GO:0000166 GO:GO:0006810
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 InterPro:IPR018222
            PROSITE:PS50177 eggNOG:NOG324333 HOGENOM:HOG000220838
            HOVERGEN:HBG007211 OrthoDB:EOG4XWFZ0 EMBL:BC097071 IPI:IPI00772318
            UniGene:Dr.31694 ProteinModelPortal:Q4V942 STRING:Q4V942
            InParanoid:Q4V942 ArrayExpress:Q4V942 Uniprot:Q4V942
        Length = 501

 Score = 107 (42.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 33/81 (40%), Positives = 40/81 (49%)

Query:    92 PDL-KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDK-VTGRSRGFGFVTMSSVEEVE- 147
             PD  +LFVGNLP  +D  +L   F T GNV EM I  K V G+   FGFV     + V+ 
Sbjct:   360 PDSHQLFVGNLPHDIDEGELKDFFMTFGNVVEMRINTKGVGGKLPNFGFVVFDDSDPVQR 419

Query:   148 ---AAAQQFNGYVSNKLSPKK 165
                A    F G V   +  KK
Sbjct:   420 ILGAKPIMFRGEVRLNVEEKK 440

 Score = 34 (17.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query:    73 SEFDQEEDLLSDEDGSNFSPDLKL 96
             +E ++EE L  +E GS  +P L L
Sbjct:   227 AEPEEEEKLPEEERGS--TPGLAL 248


>UNIPROTKB|F1LRH1 [details] [associations]
            symbol:Msi1 "RNA-binding protein Musashi homolog 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
            IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
            Uniprot:F1LRH1
        Length = 329

 Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G V+  M+++DK T R RGFGFVT  S + VE   + 
Sbjct:    77 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   137 HFHEINNKMVECKK 150


>UNIPROTKB|E1BZE6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00812068 ProteinModelPortal:E1BZE6
            Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
        Length = 380

 Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 32/74 (43%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA   
Sbjct:    34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 93

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    94 RPHKVDGRVVEPKR 107


>UNIPROTKB|I3LPG0 [details] [associations]
            symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
            "polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
            EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
        Length = 332

 Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G V+  M+++DK T R RGFGFVT  S + VE   + 
Sbjct:    77 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   137 HFHEINNKMVECKK 150


>UNIPROTKB|E1BLD4 [details] [associations]
            symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
            EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
            Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
        Length = 756

 Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 34/78 (43%), Positives = 43/78 (55%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             L LFVG LP S  S QL  LF   G V+   V+ +K +   RGFG+VT S VE+V+ A +
Sbjct:     4 LTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALK 63

Query:   152 Q---FNGYVSNKLSPKKK 166
             +   F G   N    KKK
Sbjct:    64 EITTFEGCKINVTIAKKK 81


>TAIR|locus:2133862 [details] [associations]
            symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
            metabolic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
            RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
            ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
            EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
            TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
            ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
        Length = 455

 Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 30/90 (33%), Positives = 46/90 (51%)

Query:    81 LLSDEDGSNF--SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFG 136
             L+S   G N   +   K+FVG LP S+  A+    F+  G +   +V+YD  T R RGFG
Sbjct:   107 LISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFG 166

Query:   137 FVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166
             F+T  S E V+    +    ++ K+   K+
Sbjct:   167 FITFDSEESVDMVLHKTFHELNGKMVEVKR 196

 Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:    84 DEDGSNFSPDL-KLFVGNLPFSVDSAQLAGLFETAGN-VEMVIY-DKVTGRSRGFGFVTM 140
             +E     + DL KLF+G + +  D  +L   F   G+ VE VI  D+ TGR+RGFGF+  
Sbjct:     4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63

Query:   141 S--SVEE 145
             +  SV E
Sbjct:    64 ADPSVAE 70


>UNIPROTKB|B4DM51 [details] [associations]
            symbol:MSI2 "RNA-binding protein Musashi homolog 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
            HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
            EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
            SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
        Length = 267

 Score = 115 (45.5 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G VE  M+++DK T R RGFGFVT  + + VE   + 
Sbjct:    50 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 109

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   110 HFHEINNKMVECKK 123


>UNIPROTKB|F1MS42 [details] [associations]
            symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
            "polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
            EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
            Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
        Length = 342

 Score = 117 (46.2 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G V+  M+++DK T R RGFGFVT  S + VE   + 
Sbjct:    90 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 149

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   150 HFHEINNKMVECKK 163

 Score = 92 (37.4 bits), Expect = 0.00086, P = 0.00086
 Identities = 25/73 (34%), Positives = 36/73 (49%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+F+G L +      L   F   G V+  +V+ D +T RSRGFGFVT      V+    Q
Sbjct:     1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60

Query:   153 FNGYVSNK-LSPK 164
                 + +K + PK
Sbjct:    61 SRHELDSKTIDPK 73


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K++VG+L + V + +L   F   G +E   +I D+ TGRS+GF F+T  + +  + A  +
Sbjct:    19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78

Query:   153 FNG 155
              NG
Sbjct:    79 ANG 81


>UNIPROTKB|Q9KVI6 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query:    81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFV 138
             L S ED    S    L+VGNLP+  + + +  LF   G V  V  + DK TG+ RGFGFV
Sbjct:    51 LSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFV 110

Query:   139 TMSSVEEVEAAAQQFN 154
              +++  + + A    N
Sbjct:   111 VIAA-SQAQTAIDALN 125


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K++VG+L + V + +L   F   G +E   +I D+ TGRS+GF F+T  + +  + A  +
Sbjct:    19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78

Query:   153 FNG 155
              NG
Sbjct:    79 ANG 81


>TIGR_CMR|VC_0159 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query:    81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFV 138
             L S ED    S    L+VGNLP+  + + +  LF   G V  V  + DK TG+ RGFGFV
Sbjct:    51 LSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFV 110

Query:   139 TMSSVEEVEAAAQQFN 154
              +++  + + A    N
Sbjct:   111 VIAA-SQAQTAIDALN 125


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query:    93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
             + + FVG L ++ D   L   F   G+V    +I D+ TGRSRGFGFVT    + ++ A 
Sbjct:     7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66

Query:   151 QQFNG 155
             +  NG
Sbjct:    67 EGMNG 71


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             ++VGN PF     +L   F + G +  V  + D+ TGR RGF F+  +     + A +Q 
Sbjct:     7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66

Query:   154 NG 155
             NG
Sbjct:    67 NG 68


>UNIPROTKB|E2REM2 [details] [associations]
            symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
            GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
            Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
        Length = 207

 Score = 112 (44.5 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEW-GTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    74 RPHKVDGRVVEPKR 87


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 114 (45.2 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query:    92 PDLKLFVGNLPFSVDSAQLAGLFETAGN-VEM-VIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             P+ + F+G L ++     L   FE  G+ VE  V+ DK +GRSRGFGF+T    + ++ A
Sbjct:     5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64

Query:   150 AQQFNG 155
                 NG
Sbjct:    65 IAAMNG 70


>ZFIN|ZDB-GENE-060224-1 [details] [associations]
            symbol:hnrnpa3 "heterogeneous nuclear
            ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
            UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
            Uniprot:B0V1I7
        Length = 312

 Score = 116 (45.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 28/57 (49%), Positives = 33/57 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D    RSRGFGFVT SSV EV+AA
Sbjct:    14 KLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAA 70


>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
            symbol:zgc:66127 "zgc:66127" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
            EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
            EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
            EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
            EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
            EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
            EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
            EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
            IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
            Uniprot:E7FAB3
        Length = 411

 Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 32/74 (43%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT SSV EV+AA   
Sbjct:    39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDA 98

Query:   153 FNGYVSNK-LSPKK 165
                 V  + + PK+
Sbjct:    99 RPHKVDGRAVEPKR 112


>UNIPROTKB|F1LNG4 [details] [associations]
            symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
            Uniprot:F1LNG4
        Length = 357

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 29/57 (50%), Positives = 34/57 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA
Sbjct:    14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 70


>TAIR|locus:504955752 [details] [associations]
            symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
            KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
            EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
            ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
            EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
            TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
            ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
        Length = 358

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 31/73 (42%), Positives = 38/73 (52%)

Query:    87 GSNFSPDLK---LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMS 141
             G N S D+K   +FVG +P +V   +L   F   GNV    VI D  T RSRGFGFV   
Sbjct:    99 GGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158

Query:   142 SVEEVEAAAQQFN 154
             S E V+    + N
Sbjct:   159 SEEVVDELLSKGN 171


>UNIPROTKB|O43347 [details] [associations]
            symbol:MSI1 "RNA-binding protein Musashi homolog 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
            hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
            differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=TAS] [GO:0007399 "nervous system development"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
            EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
            UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
            IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
            PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
            GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
            GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
            neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
            OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
            Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
            GermOnline:ENSG00000135097 Uniprot:O43347
        Length = 362

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G V+  M+++DK T R RGFGFVT  S + VE   + 
Sbjct:   110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   170 HFHEINNKMVECKK 183

 Score = 95 (38.5 bits), Expect = 0.00044, P = 0.00044
 Identities = 31/94 (32%), Positives = 44/94 (46%)

Query:    74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGR 131
             E D  +  L+  D S   P  K+F+G L +      L   F   G V+  +V+ D +T R
Sbjct:     2 ETDAPQPGLASPD-SPHDP-CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR 59

Query:   132 SRGFGFVTMSSVEEVEAAAQQFNGYVSNK-LSPK 164
             SRGFGFVT      V+    Q    + +K + PK
Sbjct:    60 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 93


>MGI|MGI:107376 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
            "response to hormone stimulus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
            GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
            EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
            RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
            PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
            ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
            PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
            Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
            UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
            EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
            Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
        Length = 362

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G V+  M+++DK T R RGFGFVT  S + VE   + 
Sbjct:   110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   170 HFHEINNKMVECKK 183

 Score = 95 (38.5 bits), Expect = 0.00044, P = 0.00044
 Identities = 31/94 (32%), Positives = 44/94 (46%)

Query:    74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGR 131
             E D  +  L+  D S   P  K+F+G L +      L   F   G V+  +V+ D +T R
Sbjct:     2 ETDAPQPGLASPD-SPHDP-CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR 59

Query:   132 SRGFGFVTMSSVEEVEAAAQQFNGYVSNK-LSPK 164
             SRGFGFVT      V+    Q    + +K + PK
Sbjct:    60 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 93


>RGD|628778 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
            evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
            evidence=IMP] [GO:0030855 "epithelial cell differentiation"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G V+  M+++DK T R RGFGFVT  S + VE   + 
Sbjct:   110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   170 HFHEINNKMVECKK 183

 Score = 95 (38.5 bits), Expect = 0.00044, P = 0.00044
 Identities = 31/94 (32%), Positives = 44/94 (46%)

Query:    74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGR 131
             E D  +  L+  D S   P  K+F+G L +      L   F   G V+  +V+ D +T R
Sbjct:     2 ETDAPQPGLASPD-SPHDP-CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR 59

Query:   132 SRGFGFVTMSSVEEVEAAAQQFNGYVSNK-LSPK 164
             SRGFGFVT      V+    Q    + +K + PK
Sbjct:    60 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 93


>UNIPROTKB|Q8K3P4 [details] [associations]
            symbol:Msi1 "RNA-binding protein Musashi homolog 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G V+  M+++DK T R RGFGFVT  S + VE   + 
Sbjct:   110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   170 HFHEINNKMVECKK 183

 Score = 95 (38.5 bits), Expect = 0.00044, P = 0.00044
 Identities = 31/94 (32%), Positives = 44/94 (46%)

Query:    74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGR 131
             E D  +  L+  D S   P  K+F+G L +      L   F   G V+  +V+ D +T R
Sbjct:     2 ETDAPQPGLASPD-SPHDP-CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR 59

Query:   132 SRGFGFVTMSSVEEVEAAAQQFNGYVSNK-LSPK 164
             SRGFGFVT      V+    Q    + +K + PK
Sbjct:    60 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 93


>UNIPROTKB|F1SLB3 [details] [associations]
            symbol:RBMS2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CU633731
            EMBL:CU655980 Ensembl:ENSSSCT00000000434 OMA:GHQMAPP
            ArrayExpress:F1SLB3 Uniprot:F1SLB3
        Length = 281

 Score = 115 (45.5 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L G+ +  G V    I    +G SRG GF  M S E+ EA    FN
Sbjct:   107 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 166

Query:   155 G-YV 157
             G Y+
Sbjct:   167 GKYI 170


>UNIPROTKB|F8VV01 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090681 HGNC:HGNC:9909
            EMBL:AC097104 IPI:IPI01022795 ProteinModelPortal:F8VV01 SMR:F8VV01
            Ensembl:ENST00000550726 ArrayExpress:F8VV01 Bgee:F8VV01
            Uniprot:F8VV01
        Length = 282

 Score = 115 (45.5 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L G+ +  G V    I    +G SRG GF  M S E+ EA    FN
Sbjct:    12 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 71

Query:   155 G-YV 157
             G Y+
Sbjct:    72 GKYI 75


>UNIPROTKB|E2RFV7 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
            EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
            Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
            Uniprot:E2RFV7
        Length = 378

 Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 29/57 (50%), Positives = 34/57 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92


>UNIPROTKB|P51991 [details] [associations]
            symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
            "ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
            GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
            EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
            HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
            IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
            UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
            IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
            DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
            Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
            KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
            HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
            InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
            GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
            ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
            Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
        Length = 378

 Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 29/57 (50%), Positives = 34/57 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92


>UNIPROTKB|F2Z5B4 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
            RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
            Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
            Uniprot:F2Z5B4
        Length = 379

 Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 29/57 (50%), Positives = 34/57 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92


>RGD|727807 [details] [associations]
            symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
            "ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
            projection" evidence=IDA] [GO:0051028 "mRNA transport"
            evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
            evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
            GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
            EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
            IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
            RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
            ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
            PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
            UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
            ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
            GO:GO:0051033 Uniprot:Q6URK4
        Length = 379

 Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 29/57 (50%), Positives = 34/57 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92


>UNIPROTKB|E1BEG2 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
            IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
        Length = 380

 Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 29/57 (50%), Positives = 34/57 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92


>ZFIN|ZDB-GENE-030826-25 [details] [associations]
            symbol:msi2a "musashi homolog 2a (Drosophila)"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
            EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
            RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
            Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
            GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
            OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
        Length = 388

 Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 29/74 (39%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  S     +   FE  G VE  M+++DK T R RGFGFVT  + + VE   + 
Sbjct:   111 KIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEI 170

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   171 HFHEINNKMVECKK 184

 Score = 104 (41.7 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 30/94 (31%), Positives = 42/94 (44%)

Query:    74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGR 131
             E D  +      + S   P  K+F+G L +      L   F   G +   MV+ D  T R
Sbjct:     2 EADASQVTSGSLNDSQHDPG-KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKR 60

Query:   132 SRGFGFVTMSSVEEVEAA-AQQFNGYVSNKLSPK 164
             SRGFGF+T + V  V+   AQ  +   S  + PK
Sbjct:    61 SRGFGFITFADVSSVDKVLAQPHHELDSKTIDPK 94


>UNIPROTKB|F1LM82 [details] [associations]
            symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
            GeneTree:ENSGT00700000104376 IPI:IPI00923129
            Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
        Length = 312

 Score = 115 (45.5 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    81 RPHSIDGRVVEPKR 94

 Score = 94 (38.1 bits), Expect = 0.00045, P = 0.00045
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG +    +   L   FE  G ++ +  I D+ +G+ RGFGFVT    + V+    Q
Sbjct:   112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171


>UNIPROTKB|Q28521 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
            EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
            ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
            GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
            Uniprot:Q28521
        Length = 320

 Score = 115 (45.5 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 30/74 (40%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VE+V+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    75 RPHKVDGRVVEPKR 88


>UNIPROTKB|B4DHE8 [details] [associations]
            symbol:MSI2 "RNA-binding protein Musashi homolog 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
            HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
            EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
            SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
            Uniprot:B4DHE8
        Length = 324

 Score = 115 (45.5 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G VE  M+++DK T R RGFGFVT  + + VE   + 
Sbjct:    89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 148

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   149 HFHEINNKMVECKK 162

 Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             +F+G L +      L   F   G +   MV+ D  T RSRGFGFVT +    V+    Q 
Sbjct:     1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60

Query:   154 NGYVSNK-LSPK 164
             +  + +K + PK
Sbjct:    61 HHELDSKTIDPK 72


>UNIPROTKB|Q96DH6 [details] [associations]
            symbol:MSI2 "RNA-binding protein Musashi homolog 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
            development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
            EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
            IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
            UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
            IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
            PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
            Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
            KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
            GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
            neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
            PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
            ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
            Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
        Length = 328

 Score = 115 (45.5 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G VE  M+++DK T R RGFGFVT  + + VE   + 
Sbjct:   111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   171 HFHEINNKMVECKK 184

 Score = 98 (39.6 bits), Expect = 0.00018, P = 0.00018
 Identities = 25/73 (34%), Positives = 36/73 (49%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+F+G L +      L   F   G +   MV+ D  T RSRGFGFVT +    V+    Q
Sbjct:    22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81

Query:   153 FNGYVSNK-LSPK 164
              +  + +K + PK
Sbjct:    82 PHHELDSKTIDPK 94


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 33/94 (35%), Positives = 47/94 (50%)

Query:    63 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-- 120
             S F R VA SS       L      +  SP  +LFV  L     + +L   F + G +  
Sbjct:     5 SSFRRLVAGSSSLLSSPSLCVRRCSTLTSP--RLFVSGLSRLTTNEKLQDAFASFGQLVD 62

Query:   121 EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
               VI D+ +GRS+GFGFVT +++E+ E A  + N
Sbjct:    63 ARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMN 96


>UNIPROTKB|Q2HJ60 [details] [associations]
            symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
            intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
            evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
            telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
            OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
            RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
            SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
            GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
            KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
        Length = 341

 Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    70 RPHSIDGRVVEPKR 83

 Score = 94 (38.1 bits), Expect = 0.00052, P = 0.00052
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG +    +   L   FE  G ++ +  I D+ +G+ RGFGFVT    + V+    Q
Sbjct:   101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160


>UNIPROTKB|Q9TTV2 [details] [associations]
            symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
            ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
        Length = 341

 Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    70 RPHSIDGRVVEPKR 83


>UNIPROTKB|F8W1T6 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AC090681 HGNC:HGNC:9909 EMBL:AC097104 IPI:IPI01022509
            ProteinModelPortal:F8W1T6 SMR:F8W1T6 Ensembl:ENST00000552247
            ArrayExpress:F8W1T6 Bgee:F8W1T6 Uniprot:F8W1T6
        Length = 344

 Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L G+ +  G V    I    +G SRG GF  M S E+ EA    FN
Sbjct:   137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 196

Query:   155 G-YV 157
             G Y+
Sbjct:   197 GKYI 200


>TAIR|locus:2176222 [details] [associations]
            symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
            SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
            EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
            RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
            UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
            STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
            EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
            KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
            PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
            Uniprot:Q9LU44
        Length = 804

 Score = 120 (47.3 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query:    93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
             +  L++G LP  ++   L  LF + G + M  VI D+VTG S+G+GFV  + V+    A 
Sbjct:   479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538

Query:   151 QQFNGY 156
             Q  NGY
Sbjct:   539 QAMNGY 544


>MGI|MGI:1923876 [details] [associations]
            symbol:Msi2 "musashi RNA-binding protein 2" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
            "polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
            EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
            EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
            IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
            UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
            SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
            PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
            GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
            OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
            Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
        Length = 346

 Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G VE  M+++DK T R RGFGFVT  + + VE   + 
Sbjct:   111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   171 HFHEINNKMVECKK 184

 Score = 98 (39.6 bits), Expect = 0.00019, P = 0.00019
 Identities = 25/73 (34%), Positives = 36/73 (49%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+F+G L +      L   F   G +   MV+ D  T RSRGFGFVT +    V+    Q
Sbjct:    22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81

Query:   153 FNGYVSNK-LSPK 164
              +  + +K + PK
Sbjct:    82 PHHELDSKTIDPK 94


>UNIPROTKB|F1M460 [details] [associations]
            symbol:F1M460 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
            ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
            ArrayExpress:F1M460 Uniprot:F1M460
        Length = 224

 Score = 111 (44.1 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 28/57 (49%), Positives = 33/57 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KL +G L F      L   FE  G +   +V+ D  T RSRGFGFVT S VEEV+AA
Sbjct:     9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 65


>FB|FBgn0035016 [details] [associations]
            symbol:CG4612 species:7227 "Drosophila melanogaster"
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
            GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
            RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
            IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
            EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
            KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
            InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
            NextBio:806022 Uniprot:Q9W158
        Length = 307

 Score = 114 (45.2 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 27/75 (36%), Positives = 39/75 (52%)

Query:    87 GSNFSPDL-KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVE 144
             G N SPD  K+++ NL  S+D+  +   F   GN+    +     G SRG+GFV   S E
Sbjct:   105 GGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEE 164

Query:   145 EVEAAAQQFNGYVSN 159
                AA ++ NG + N
Sbjct:   165 AARAAIEKVNGMLCN 179


>UNIPROTKB|F1LNF1 [details] [associations]
            symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
            GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
            GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
            ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
            ArrayExpress:F1LNF1 Uniprot:F1LNF1
        Length = 352

 Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    81 RPHSIDGRVVEPKR 94

 Score = 94 (38.1 bits), Expect = 0.00054, P = 0.00054
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG +    +   L   FE  G ++ +  I D+ +G+ RGFGFVT    + V+    Q
Sbjct:   112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171


>UNIPROTKB|F1Q1K6 [details] [associations]
            symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
            Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
        Length = 353

 Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    82 RPHSIDGRVVEPKR 95

 Score = 94 (38.1 bits), Expect = 0.00054, P = 0.00054
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG +    +   L   FE  G ++ +  I D+ +G+ RGFGFVT    + V+    Q
Sbjct:   113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172


>UNIPROTKB|P22626 [details] [associations]
            symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
            [GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
            "single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
            "RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
            GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
            HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
            HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
            EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
            EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
            PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
            PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
            IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
            DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
            REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
            SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
            Ensembl:ENST00000354667 Ensembl:ENST00000356674
            Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
            UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
            MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
            ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
            NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
            Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
        Length = 353

 Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    82 RPHSIDGRVVEPKR 95

 Score = 94 (38.1 bits), Expect = 0.00054, P = 0.00054
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG +    +   L   FE  G ++ +  I D+ +G+ RGFGFVT    + V+    Q
Sbjct:   113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172


>UNIPROTKB|Q5RBU8 [details] [associations]
            symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
            A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
            HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
            RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
            ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
            KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
        Length = 353

 Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    82 RPHSIDGRVVEPKR 95

 Score = 94 (38.1 bits), Expect = 0.00054, P = 0.00054
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG +    +   L   FE  G ++ +  I D+ +G+ RGFGFVT    + V+    Q
Sbjct:   113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172


>MGI|MGI:104819 [details] [associations]
            symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
            A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
            [GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
            [GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
            evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
            [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
            CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
            ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
            EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
            EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
            RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
            UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
            IntAct:O88569 STRING:O88569 PhosphoSite:O88569
            REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
            SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
            Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
            Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
            KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
            NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
            Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
        Length = 353

 Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    82 RPHSIDGRVVEPKR 95

 Score = 94 (38.1 bits), Expect = 0.00054, P = 0.00054
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG +    +   L   FE  G ++ +  I D+ +G+ RGFGFVT    + V+    Q
Sbjct:   113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172


>RGD|1310403 [details] [associations]
            symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
            "single-stranded telomeric DNA binding" evidence=IEA;ISO]
            [GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
            evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
            [GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
            eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
            CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
            EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
            IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
            ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
            GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
            InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
            Genevestigator:A7VJC2 Uniprot:A7VJC2
        Length = 353

 Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    82 RPHSIDGRVVEPKR 95

 Score = 93 (37.8 bits), Expect = 0.00070, P = 0.00070
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
             KLFVG +    +   L   FE  G ++ +  I D+ +G+ RGFGFVT    + V+
Sbjct:   113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVD 167


>UNIPROTKB|F1RX74 [details] [associations]
            symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
            GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
            EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
        Length = 353

 Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA A 
Sbjct:    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    82 RPHSIDGRVVEPKR 95


>ASPGD|ASPL0000078272 [details] [associations]
            symbol:AN4330 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
            OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
            ProteinModelPortal:Q5B550 STRING:Q5B550
            EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
            Uniprot:Q5B550
        Length = 724

 Score = 119 (46.9 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 27/73 (36%), Positives = 45/73 (61%)

Query:    85 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSS 142
             EDG+   P  +LF+ +LP S  +  LA  F  +  ++  +V+ D  T +S+G+GFVT + 
Sbjct:    29 EDGAT-QPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFAD 87

Query:   143 VEEVEAAAQQFNG 155
             VE+ +AA ++ NG
Sbjct:    88 VEDAKAALEELNG 100


>SGD|S000001128 [details] [associations]
            symbol:NAM8 "RNA binding protein, component of the U1 snRNP
            protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
            snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
            evidence=IPI] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
            EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
            RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
            DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
            PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
            KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
            HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
            Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
        Length = 523

 Score = 117 (46.2 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 32/106 (30%), Positives = 59/106 (55%)

Query:    58 LPSSPSRFVR-NVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLF-- 114
             +P+ P++ ++ N A SS  +    L + + G+N S    +FVG+L  +V  +QL  LF  
Sbjct:   130 IPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCS----IFVGDLAPNVTESQLFELFIN 185

Query:   115 -ETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159
                + +   +++D+VTG S+G+GFV  ++ +E + A  +  G   N
Sbjct:   186 RYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLN 231


>UNIPROTKB|Q9NW13 [details] [associations]
            symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
            EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
            EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
            RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
            SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
            DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
            PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
            UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
            HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
            neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
            HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
            OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
            GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
            CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
            Uniprot:Q9NW13
        Length = 759

 Score = 119 (46.9 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 33/78 (42%), Positives = 43/78 (55%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             L LFVG LP S  S QL  LF   G V+   V+ +K +   RGFG+VT S +E+V+ A +
Sbjct:     4 LTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 63

Query:   152 Q---FNGYVSNKLSPKKK 166
             +   F G   N    KKK
Sbjct:    64 EITTFEGCKINVTVAKKK 81


>MGI|MGI:1861776 [details] [associations]
            symbol:Rbms2 "RNA binding motif, single stranded interacting
            protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1861776 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
            eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
            OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP EMBL:BC021627 EMBL:AK054482
            IPI:IPI00121520 RefSeq:NP_001034169.1 RefSeq:NP_062685.2
            UniGene:Mm.42247 ProteinModelPortal:Q8VC70 SMR:Q8VC70 STRING:Q8VC70
            PhosphoSite:Q8VC70 PRIDE:Q8VC70 Ensembl:ENSMUST00000092033
            GeneID:56516 KEGG:mmu:56516 UCSC:uc007hlm.1 InParanoid:Q8VC70
            ChiTaRS:RBMS2 NextBio:312832 Bgee:Q8VC70 Genevestigator:Q8VC70
            GermOnline:ENSMUSG00000040043 Uniprot:Q8VC70
        Length = 383

 Score = 115 (45.5 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L G+ +  G V    I    +G SRG GF  M S E+ EA    FN
Sbjct:   139 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFN 198

Query:   155 G-YV 157
             G Y+
Sbjct:   199 GKYI 202


>FB|FBgn0037602 [details] [associations]
            symbol:CG8021 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
            [GO:0035145 "exon-exon junction complex" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
            GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
            RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
            EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
            UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
            OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
        Length = 91

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 23/69 (33%), Positives = 40/69 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVGNLP+++ S +L   F   G+V    V++D+  G S+ +GFV  S  +   +A+ Q
Sbjct:    11 KLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQRDAFNSASNQ 70

Query:   153 FNGYVSNKL 161
                ++  ++
Sbjct:    71 NTHFLDGRV 79


>UNIPROTKB|Q3AF33 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             L+VGNLP+ + S QL  +    G V    VI +K TGRSRG+GF+ +   E+ E      
Sbjct:     5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63

Query:   154 NG 155
             NG
Sbjct:    64 NG 65


>TIGR_CMR|CHY_0389 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             L+VGNLP+ + S QL  +    G V    VI +K TGRSRG+GF+ +   E+ E      
Sbjct:     5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63

Query:   154 NG 155
             NG
Sbjct:    64 NG 65


>UNIPROTKB|G4MR34 [details] [associations]
            symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
            subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
            ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
            GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
        Length = 305

 Score = 113 (44.8 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query:    88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
             S+  P   +FVGN+P+ +   Q+  +F  AG V    ++YD+ TG+ +GFGF      + 
Sbjct:     2 SSKPPSRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDS 61

Query:   146 VEAAAQQFN 154
               +A +  N
Sbjct:    62 AASAVRNLN 70


>UNIPROTKB|Q5ZME1 [details] [associations]
            symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
            evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
            GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
            EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
            UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
            Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
            InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
        Length = 349

 Score = 114 (45.2 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+AA
Sbjct:    18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 74

 Score = 94 (38.1 bits), Expect = 0.00053, P = 0.00053
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLFVG +    +   L   FE  G ++ +  I D+ +G+ RGFGFVT    + V+    Q
Sbjct:   109 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 168


>UNIPROTKB|Q3ZC34 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9913 "Bos taurus"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GeneTree:ENSGT00630000089747 eggNOG:NOG320163 HOGENOM:HOG000008467
            HOVERGEN:HBG053108 OrthoDB:EOG469QV2 EMBL:BC102935 IPI:IPI00706755
            RefSeq:NP_001029537.1 UniGene:Bt.87430 HSSP:Q15434
            ProteinModelPortal:Q3ZC34 SMR:Q3ZC34 PRIDE:Q3ZC34
            Ensembl:ENSBTAT00000023705 GeneID:509798 KEGG:bta:509798 CTD:5939
            InParanoid:Q3ZC34 OMA:SQQMAPP NextBio:20869135 Uniprot:Q3ZC34
        Length = 407

 Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L G+ +  G V    I    +G SRG GF  M S E+ EA    FN
Sbjct:   137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 196

Query:   155 G-YV 157
             G Y+
Sbjct:   197 GKYI 200


>UNIPROTKB|F1P990 [details] [associations]
            symbol:RBMS2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00630000089747 CTD:5939 OMA:SQQMAPP EMBL:AAEX03006927
            RefSeq:XP_538236.2 ProteinModelPortal:F1P990
            Ensembl:ENSCAFT00000000217 GeneID:481115 KEGG:cfa:481115
            Uniprot:F1P990
        Length = 407

 Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L G+ +  G V    I    +G SRG GF  M S E+ EA    FN
Sbjct:   137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 196

Query:   155 G-YV 157
             G Y+
Sbjct:   197 GKYI 200


>UNIPROTKB|Q15434 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0006396 eggNOG:NOG320163 HOGENOM:HOG000008467
            HOVERGEN:HBG053108 OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP
            EMBL:D28483 EMBL:BC027863 EMBL:BC072679 IPI:IPI00003706 PIR:S47660
            RefSeq:NP_002889.1 UniGene:Hs.505729 UniGene:Hs.683360 PDB:1X4E
            PDBsum:1X4E ProteinModelPortal:Q15434 SMR:Q15434 IntAct:Q15434
            STRING:Q15434 PhosphoSite:Q15434 DMDM:55976301 PRIDE:Q15434
            Ensembl:ENST00000262031 GeneID:5939 KEGG:hsa:5939 UCSC:uc001sln.2
            GeneCards:GC12P056915 HGNC:HGNC:9909 HPA:HPA039225 MIM:602387
            neXtProt:NX_Q15434 PharmGKB:PA34275 InParanoid:Q15434
            PhylomeDB:Q15434 EvolutionaryTrace:Q15434 GenomeRNAi:5939
            NextBio:23154 ArrayExpress:Q15434 Bgee:Q15434 CleanEx:HS_RBMS2
            Genevestigator:Q15434 GermOnline:ENSG00000076067 Uniprot:Q15434
        Length = 407

 Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L G+ +  G V    I    +G SRG GF  M S E+ EA    FN
Sbjct:   137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 196

Query:   155 G-YV 157
             G Y+
Sbjct:   197 GKYI 200


>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
            symbol:msi2b "musashi homolog 2b (Drosophila)"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
            EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
            IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
            STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
            KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
            NextBio:20815041 Uniprot:Q7SXT6
        Length = 408

 Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   FE  G VE  M+++DK T R RGFGFVT  + + VE   + 
Sbjct:   111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   171 HFHEINNKMVECKK 184

 Score = 105 (42.0 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 30/94 (31%), Positives = 41/94 (43%)

Query:    74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGR 131
             E D  +      + S   P  K+F+G L +      L   F   G +   MV+ D  T R
Sbjct:     2 EGDGSQATSGSPNDSQHDPG-KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60

Query:   132 SRGFGFVTMSSVEEVEAA-AQQFNGYVSNKLSPK 164
             SRGFGFVT +    V+   AQ  +   S  + PK
Sbjct:    61 SRGFGFVTFADAASVDKVLAQPHHELDSKTIDPK 94


>UNIPROTKB|D4A5K7 [details] [associations]
            symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
            isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
            CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
            Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
            NextBio:664628 Uniprot:D4A5K7
        Length = 700

 Score = 118 (46.6 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 33/78 (42%), Positives = 43/78 (55%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             L LFVG LP S  S QL  LF   G V+   V+ +K +   RGFG+VT S +E+V+ A +
Sbjct:     4 LTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 63

Query:   152 Q---FNGYVSNKLSPKKK 166
             +   F G   N    KKK
Sbjct:    64 EITTFEGCKINVTIAKKK 81


>TAIR|locus:2046298 [details] [associations]
            symbol:emb2444 "embryo defective 2444" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
            KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
            RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
            SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
            GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
            OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
            Genevestigator:Q9ZU66 Uniprot:Q9ZU66
        Length = 363

 Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 28/82 (34%), Positives = 41/82 (50%)

Query:    83 SDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM---VIYDKVTGRSRGFGFVT 139
             + +D  +      LF+GNL   VD   L   F   G +     ++ D  TG SRGFGF++
Sbjct:   101 ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFIS 160

Query:   140 MSSVEEVEAAAQQFNG-YVSNK 160
               S E  +AA +   G Y+SN+
Sbjct:   161 YDSFEASDAAIESMTGQYLSNR 182


>UNIPROTKB|F1M5L3 [details] [associations]
            symbol:F1M5L3 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
            EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
            Uniprot:F1M5L3
        Length = 364

 Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 28/57 (49%), Positives = 33/57 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T  SRGFGFVT S VEEV+AA
Sbjct:    37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAA 93


>UNIPROTKB|F1M117 [details] [associations]
            symbol:F1M117 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
            EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
            Uniprot:F1M117
        Length = 366

 Score = 114 (45.2 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 28/57 (49%), Positives = 33/57 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F      L   FE  G +   +V+ D  T  SRGFGFVT S VEEV+AA
Sbjct:    37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAA 93


>TAIR|locus:2007903 [details] [associations]
            symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
            UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
            EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
            Uniprot:F4I906
        Length = 369

 Score = 114 (45.2 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query:    84 DEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMS 141
             D D    S   K+FVG LP  ++  +L   F   G++    ++YD  TGRSRGFGFVT  
Sbjct:   147 DTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQ 206

Query:   142 SVEEVE 147
             + + V+
Sbjct:   207 TEDSVD 212

 Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
 Identities = 24/80 (30%), Positives = 39/80 (48%)

Query:    88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEE 145
             S+ S   KLFVG + +   +   A  F   G V   +++ D++TG  RGFGFVT +    
Sbjct:    60 SSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAV 119

Query:   146 VEAAAQQFNGYVSNKLSPKK 165
              E   ++ +     K+  K+
Sbjct:   120 AEKVLEEDHVIDDRKVDLKR 139


>RGD|1311336 [details] [associations]
            symbol:Rbm28 "RNA binding motif protein 28" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
            ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
            UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
        Length = 749

 Score = 118 (46.6 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 33/78 (42%), Positives = 43/78 (55%)

Query:    94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             L LFVG LP S  S QL  LF   G V+   V+ +K +   RGFG+VT S +E+V+ A +
Sbjct:     4 LTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 63

Query:   152 Q---FNGYVSNKLSPKKK 166
             +   F G   N    KKK
Sbjct:    64 EITTFEGCKINVTIAKKK 81


>UNIPROTKB|F1Q2T4 [details] [associations]
            symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
            Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
        Length = 290

 Score = 112 (44.5 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 30/74 (40%), Positives = 44/74 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F   +  L   FE  G +   +V+ D  T  SRGFGFVT ++V+EV+AA + 
Sbjct:    15 KLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAARSH 74

Query:   152 QFNGYVSNKLSPKK 165
             + +G V   + PK+
Sbjct:    75 KVDGRV---VEPKR 85


>FB|FBgn0010263 [details] [associations]
            symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
            "germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
            "nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
            evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
            HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
            ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
            InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
        Length = 444

 Score = 115 (45.5 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 31/80 (38%), Positives = 43/80 (53%)

Query:    86 DGSNFSPDLK--LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMS 141
             + +N  PD K  L V  LP ++   ++  LF + G VE   +I DKVTG+S G+GFV   
Sbjct:   100 NNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYV 159

Query:   142 SVEEVEAAAQQFNGY-VSNK 160
               E+ E A    NG  + NK
Sbjct:   160 KQEDAEKAINALNGLRLQNK 179

 Score = 100 (40.3 bits), Expect = 0.00017, P = 0.00017
 Identities = 27/69 (39%), Positives = 38/69 (55%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             +FV NL    +   L  LF   G V+ V  I D  + + +GFGFVTM++ EE   A Q  
Sbjct:   363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422

Query:   154 NGY-VSNKL 161
             NGY + N++
Sbjct:   423 NGYTLGNRV 431


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query:    93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
             + + FVG L ++ +   L   F   G+V    +I D+ +GRSRGFGFVT    + +  A 
Sbjct:     5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64

Query:   151 QQFNG 155
             ++ NG
Sbjct:    65 EEMNG 69


>UNIPROTKB|F1PVY3 [details] [associations]
            symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
            Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
        Length = 301

 Score = 112 (44.5 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   FE  G +   +V+ D  T RSRGFGFVT ++VEEV+AA   
Sbjct:    15 KLFIGGLSFETTDESLRSHFEW-GTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73

Query:   153 FNGYVSNKL-SPKK 165
                 V  ++  PK+
Sbjct:    74 RPHKVDGRVVEPKR 87


>TAIR|locus:2027372 [details] [associations]
            symbol:RBP45B species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
            [GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
            HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
            EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
            IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
            RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
            SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
            GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
            OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
            Genevestigator:Q9SAB3 Uniprot:Q9SAB3
        Length = 405

 Score = 114 (45.2 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 36/103 (34%), Positives = 51/103 (49%)

Query:    57 PLPSSPSRFVR-NVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
             P+PS P +  R N A  S  D+ +D          SPD  +FVG+L   V    L   F 
Sbjct:   127 PIPSFPDQLFRLNWASLSSGDKRDD----------SPDYTIFVGDLAADVTDYILLETFR 176

Query:   116 TA-GNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
              +  +V+   V+ D+VTGR++G+GFV  S   E   A  + NG
Sbjct:   177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNG 219


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 109 (43.4 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 26/67 (38%), Positives = 34/67 (50%)

Query:    91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
             S + KLF+G L +      L   F   G +  V  I D+ T RSRGFGFVT  + E+ + 
Sbjct:    20 SDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKD 79

Query:   149 AAQQFNG 155
             A    NG
Sbjct:    80 AMAAMNG 86


>UNIPROTKB|E2RJS6 [details] [associations]
            symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
            Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
        Length = 316

 Score = 112 (44.5 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 30/74 (40%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+  L F      L   FE  G +   +V+ D  T RSRGFGFV  ++VEEV+AA   
Sbjct:    15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74

Query:   153 FNGYVSNK-LSPKK 165
                 V+ + L PK+
Sbjct:    75 RPNKVNGRVLEPKR 88


>UNIPROTKB|E2RJS4 [details] [associations]
            symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
            Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
        Length = 330

 Score = 112 (44.5 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 28/73 (38%), Positives = 39/73 (53%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F   +  L   FE  G +   + + D  T  SRGFGFVT +++EEV+AA   
Sbjct:    29 KLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATNA 88

Query:   153 FNGYVSNKLSPKK 165
                 V   + PK+
Sbjct:    89 RPHKVDRVVEPKR 101


>CGD|CAL0002077 [details] [associations]
            symbol:NOP15 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000915 "cytokinesis, actomyosin
            contractile ring assembly" evidence=IEA] [GO:0042273 "ribosomal
            large subunit biogenesis" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            CGD:CAL0002077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AACQ01000024 eggNOG:NOG244773 KO:K14838 RefSeq:XP_720342.1
            RefSeq:XP_888701.1 ProteinModelPortal:Q5AFL8 STRING:Q5AFL8
            GeneID:3637966 GeneID:3704039 KEGG:cal:CaO19.7050
            KEGG:cal:CaO19_7050 Uniprot:Q5AFL8
        Length = 267

 Score = 91 (37.1 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             +++G LP     ++L   F   G+V  V    +K TG ++ +GF+   S+E  + AA+  
Sbjct:   126 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 185

Query:   154 NGYV 157
             N Y+
Sbjct:   186 NNYL 189

 Score = 37 (18.1 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query:    57 PLPSSPSRFVRNVAVSSEFDQEEDL----LSDEDGS 88
             P   S      ++ + S  D+EED+    LS+E+ S
Sbjct:    23 PSEKSVEDIEHDLQLPSSSDEEEDIEQEELSEEESS 58

 Score = 33 (16.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query:    73 SEFDQEEDLLSDEDGSN 89
             S  D+EE+ +  ED  N
Sbjct:    57 SSGDEEEEEVEKEDNIN 73


>UNIPROTKB|F1PSC4 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
            Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
        Length = 334

 Score = 112 (44.5 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 31/96 (32%), Positives = 45/96 (46%)

Query:    62 PSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE 121
             P RF++N   +   D   +   D+ G        L V  LP ++   +L  LF + G VE
Sbjct:     1 PHRFLKNTMSNGYEDHMAEDCRDDIGRT-----NLIVNYLPQNMTQDELRSLFSSIGEVE 55

Query:   122 M--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
                +I DKV G S G+GFV   + ++ E A    NG
Sbjct:    56 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 91

 Score = 101 (40.6 bits), Expect = 8.6e-05, P = 8.6e-05
 Identities = 28/71 (39%), Positives = 36/71 (50%)

Query:    89 NFSPDLKLFVGNLPFSVDSA---QLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEE 145
             N S    +F+ NL    D     Q+ G F    NV+ VI D  T + +GFGFVTM++ EE
Sbjct:   247 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVK-VIRDFNTNKCKGFGFVTMTNYEE 305

Query:   146 VEAAAQQFNGY 156
                A    NGY
Sbjct:   306 AAMAIASLNGY 316

 Score = 95 (38.5 bits), Expect = 0.00039, P = 0.00039
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query:    93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
             D  L++  LP ++    +  +F   G +    V+ D+ TG SRG  F+      E E A 
Sbjct:   113 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 172

Query:   151 QQFNGY 156
               FNG+
Sbjct:   173 TSFNGH 178


>TAIR|locus:2200975 [details] [associations]
            symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0006655
            "phosphatidylglycerol biosynthetic process" evidence=RCA]
            [GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
            RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
            SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
            KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
        Length = 294

 Score = 111 (44.1 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             +L+V N+P S D AQL  +F+  G   +VE+V  +  TG SRG G+VTM S+   + A  
Sbjct:   109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168

Query:   152 QFNG 155
               +G
Sbjct:   169 SLDG 172

 Score = 103 (41.3 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K++VGNLP+      L   F   G +    V++D+ TGR+R F F++ +S EE +AA   
Sbjct:   214 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS- 272

Query:   153 FNG 155
             FNG
Sbjct:   273 FNG 275


>ZFIN|ZDB-GENE-050320-86 [details] [associations]
            symbol:msi1 "musashi homolog 1 (Drosophila)"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
            nervous system development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
        Length = 349

 Score = 112 (44.5 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L  +     +   F+  G V+  M+++DK T R RGFGFVT  + + VE   + 
Sbjct:   110 KIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 169

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   170 HFHEINNKMVECKK 183

 Score = 101 (40.6 bits), Expect = 9.3e-05, P = 9.3e-05
 Identities = 33/94 (35%), Positives = 44/94 (46%)

Query:    74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGR 131
             E +  +  LS  D S   P  K+F+G L +      L   F   G V+  MV+ D VT R
Sbjct:     2 ESEGSQSNLSSSD-SPHDP-CKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKR 59

Query:   132 SRGFGFVTMSSVEEVEAAAQQFNGYVSNK-LSPK 164
             SRGFGFVT      V+    Q    + +K + PK
Sbjct:    60 SRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPK 93


>ZFIN|ZDB-GENE-070212-1 [details] [associations]
            symbol:dazap1 "DAZ associated protein 1" species:7955
            "Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
            EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
            Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
        Length = 407

 Score = 113 (44.8 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 29/81 (35%), Positives = 43/81 (53%)

Query:    88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMV-IYDKVTGRSRGFGFVTMSSVEE 145
             S+ +   K+FVG +P +   A+L   F   G V E+V IYD    R RGFGF+T  + + 
Sbjct:   107 SDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQS 166

Query:   146 VEAAAQQ-FNGYVSNKLSPKK 165
             V+ A    F+  +  K+  KK
Sbjct:   167 VDQAVNMHFHDIMGKKVEVKK 187


>UNIPROTKB|B4DVB8 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
            UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
            IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
            STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
            ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
        Length = 353

 Score = 112 (44.5 bits), Expect = 6.0e-06, P = 6.0e-06
 Identities = 33/97 (34%), Positives = 46/97 (47%)

Query:    62 PSRFVRNVAVSSEFDQ-EEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV 120
             P RF++N   +   D   ED   D   +N      L V  LP ++   +L  LF + G V
Sbjct:    20 PCRFLKNTMSNGYEDHMAEDCRGDIGRTN------LIVNYLPQNMTQDELRSLFSSIGEV 73

Query:   121 EM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
             E   +I DKV G S G+GFV   + ++ E A    NG
Sbjct:    74 ESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 110

 Score = 101 (40.6 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 28/71 (39%), Positives = 36/71 (50%)

Query:    89 NFSPDLKLFVGNLPFSVDSA---QLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEE 145
             N S    +F+ NL    D     Q+ G F    NV+ VI D  T + +GFGFVTM++ EE
Sbjct:   266 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVK-VIRDFNTNKCKGFGFVTMTNYEE 324

Query:   146 VEAAAQQFNGY 156
                A    NGY
Sbjct:   325 AAMAIASLNGY 335

 Score = 95 (38.5 bits), Expect = 0.00042, P = 0.00042
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query:    93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
             D  L++  LP ++    +  +F   G +    V+ D+ TG SRG  F+      E E A 
Sbjct:   132 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 191

Query:   151 QQFNGY 156
               FNG+
Sbjct:   192 TSFNGH 197


>UNIPROTKB|D4A1X0 [details] [associations]
            symbol:D4A1X0 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
            GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
            ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
        Length = 312

 Score = 111 (44.1 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA-AQ 151
             KLF+G L F      L   +E  G +   +V+ D  + RSRGFGFVT SS+ EV+ A A 
Sbjct:    10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69

Query:   152 QFNGYVSNKLSPKK 165
             + +      + PK+
Sbjct:    70 RPHSIDGRVVEPKR 83


>UNIPROTKB|I3LJN1 [details] [associations]
            symbol:I3LJN1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
            export" evidence=IEA] [GO:0045111 "intermediate filament
            cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 InterPro:IPR021662 Pfam:PF11627
            GeneTree:ENSGT00550000074566 EMBL:CU407216
            Ensembl:ENSSSCT00000027879 Uniprot:I3LJN1
        Length = 207

 Score = 107 (42.7 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 30/77 (38%), Positives = 40/77 (51%)

Query:    92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             P+LKLF+G L F      L    E  G +    V+    T RSRGFGFVT ++V EV+AA
Sbjct:    10 PELKLFIGGLSFETTDEGLRSHSEPWGTLTDHAVMRGPNTKRSRGFGFVTYATVGEVDAA 69

Query:   150 AQQFNGYVSNKL-SPKK 165
                    V  ++  PK+
Sbjct:    70 MNARPHKVDGRVVEPKR 86


>DICTYBASE|DDB_G0270634 [details] [associations]
            symbol:DDB_G0270634 "putative splicing regulator"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
            EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
            InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
            Uniprot:Q55D63
        Length = 368

 Score = 112 (44.5 bits), Expect = 6.5e-06, P = 6.5e-06
 Identities = 29/84 (34%), Positives = 44/84 (52%)

Query:    74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGR 131
             +++Q++     +   N S DL  F+  LPF+    +L  LF   GNV    V  DK T +
Sbjct:   269 DYNQQQQQQQQQQQPNESNDL--FIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQ 326

Query:   132 SRGFGFVTMSSVEEVEAAAQQFNG 155
             S+ FGFV+  + +   AA Q+ NG
Sbjct:   327 SKCFGFVSYDNTQSAIAAIQELNG 350


>FB|FBgn0260943 [details] [associations]
            symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
            GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
            RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
            UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
            DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
            EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
            UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
            OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
            Uniprot:Q9VVE5
        Length = 369

 Score = 112 (44.5 bits), Expect = 6.5e-06, P = 6.5e-06
 Identities = 27/74 (36%), Positives = 39/74 (52%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+FVG L        +   FE  G +E  M+++DK T R RGFGFVT  S + V+   + 
Sbjct:   119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEI 178

Query:   153 FNGYVSNKLSPKKK 166
                 ++NK+   KK
Sbjct:   179 HFHEINNKMVECKK 192

 Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
 Identities = 26/73 (35%), Positives = 35/73 (47%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+F+G L +      L   F   G++   MV+ D  T RSRGFGFVT S    V+    Q
Sbjct:    30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89

Query:   153 FNGYVSNK-LSPK 164
                 +  K + PK
Sbjct:    90 GTHELDGKKVDPK 102


>TAIR|locus:4515103555 [details] [associations]
            symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
            UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
            EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
            TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
            Genevestigator:Q1G378 Uniprot:Q1G378
        Length = 175

 Score = 104 (41.7 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
             K++VG LP+   +  L   FE  G++  V  + D+ TGRS G+GFVT    E    A Q
Sbjct:    53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQ 111


>UNIPROTKB|C9J9B2 [details] [associations]
            symbol:RBMS3 "RNA-binding motif,
            single-stranded-interacting protein 3" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
            EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
            HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
            ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
            Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
            Uniprot:C9J9B2
        Length = 264

 Score = 109 (43.4 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
             L++ NLP S+D  +L  + +  G+V    I     G SRG GF  M S E+ E   Q FN
Sbjct:   142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFN 201

Query:   155 G 155
             G
Sbjct:   202 G 202


>TAIR|locus:2199700 [details] [associations]
            symbol:PAB3 "poly(A) binding protein 3" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006397
            "mRNA processing" evidence=IGI] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
            EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
            RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
            SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
            GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
            OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
            Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
        Length = 660

 Score = 115 (45.5 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 32/104 (30%), Positives = 51/104 (49%)

Query:    59 PSSPSRFVRNVAVSSEFDQE-EDLLSDEDGSN-FSPDLKLFVGNLPFSVDSAQLAGLFET 116
             P+   R +  +  +  FD+    +LS+ D S   S    +F+ NL  S+D+  L   F +
Sbjct:    99 PNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSS 158

Query:   117 AGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159
              G +    +   VTGRS+G+GFV     E  +AA  + NG + N
Sbjct:   159 FGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMN 202

 Score = 101 (40.6 bits), Expect = 0.00023, P = 0.00023
 Identities = 31/91 (34%), Positives = 43/91 (47%)

Query:    67 RNVAVSSEFDQEE-DLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVI 124
             R   +  +F+QE  +      G+N      L++ NL  SVD  +L  +F   GNV    +
Sbjct:   310 REEELRRKFEQERINRFEKSQGAN------LYLKNLDDSVDDEKLKEMFSEYGNVTSSKV 363

Query:   125 YDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
                  G SRGFGFV  S+ EE   A  + NG
Sbjct:   364 MLNPQGMSRGFGFVAYSNPEEALRALSEMNG 394


>UNIPROTKB|F1LZL9 [details] [associations]
            symbol:F1LZL9 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
            Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
        Length = 247

 Score = 108 (43.1 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
             KLF+G L F          FE  G +   +V  D  T RSRGFGFVT ++VEEV+AA
Sbjct:     1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAA 57


>WB|WBGene00003423 [details] [associations]
            symbol:msi-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
            GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
            PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
            ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
            EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
            CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
            Uniprot:G5EFS2
        Length = 320

 Score = 110 (43.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 27/74 (36%), Positives = 39/74 (52%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             K+F+G L  +     +   FET G VE  M+++DK T R RGFGFVT  S E  +   + 
Sbjct:   135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEI 194

Query:   153 FNGYVSNKLSPKKK 166
                 ++ K+   KK
Sbjct:   195 HFHEINGKMVECKK 208

 Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 35/96 (36%), Positives = 51/96 (53%)

Query:    77 QEEDLLSD-EDGSNFSPDL-KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRS 132
             +E  L +D +DGS+ S D  K+F+G L +   +  L   F   G V   MV+ D  T R+
Sbjct:    26 EEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRA 85

Query:   133 RGFGFVTM---SSVEEV-EAAAQQFNGYVSNKLSPK 164
             RGFGF+T    SSV++V      + +G    K+ PK
Sbjct:    86 RGFGFITFVDPSSVDKVLNNREHELDG---KKIDPK 118


>DICTYBASE|DDB_G0274523 [details] [associations]
            symbol:DDB_G0274523 "RNA recognition motif-containing
            protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
            RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
            EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
            InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
        Length = 904

 Score = 116 (45.9 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 31/90 (34%), Positives = 47/90 (52%)

Query:    81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFV 138
             + S+  G   + D  LFV +LP  VD + L  LF   G ++ V  I DK TG ++G+GFV
Sbjct:   756 ITSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFV 815

Query:   139 TMSSVEEVEAAAQQFNGY-VSNK-LSPKKK 166
                  +E     ++ NG+ + +K L  K K
Sbjct:   816 KFYQTDEALKCQKEMNGFRIGSKFLKVKLK 845

 Score = 98 (39.6 bits), Expect = 0.00070, P = 0.00070
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query:    96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
             +FV +LP+  +   L  LF   G V    V+ D   G S G+GFV  SS +E  AA ++ 
Sbjct:   111 VFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDP-KGNSYGYGFVRFSSPQESAAAIEEL 169

Query:   154 NGY-VSNK 160
             +GY   NK
Sbjct:   170 DGYQYQNK 177


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 104 (41.7 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 30/94 (31%), Positives = 42/94 (44%)

Query:    64 RFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN-VEM 122
             R +  V +SS    +    S    S+  P  KL+V  L F      L   FE  GN + M
Sbjct:    49 RDIGGVLISSCLSTDSS--SSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHM 106

Query:   123 -VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
              ++ DKV  R +GF F+   + EE   A Q  +G
Sbjct:   107 NMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHG 140


>WB|WBGene00011279 [details] [associations]
            symbol:asd-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000013767 KO:K14946 HSSP:P33240 EMBL:Z36238
            EMBL:DQ485531 PIR:T24255 RefSeq:NP_497841.1 UniGene:Cel.17456
            SMR:G5EEW7 IntAct:G5EEW7 EnsemblMetazoa:R74.5a GeneID:175542
            KEGG:cel:CELE_R74.5 CTD:175542 WormBase:R74.5a OMA:QRRFAPY
            NextBio:888594 Uniprot:G5EEW7
        Length = 404

 Score = 111 (44.1 bits), Expect = 9.7e-06, P = 9.7e-06
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query:    83 SDEDGSNFSPD--LKLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGF 137
             +D   S+ S D   +L V N+PF      L  +FE  G   +VE++  ++  G S+GFGF
Sbjct:    87 NDRSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNER--G-SKGFGF 143

Query:   138 VTMSSVEEVEAAAQQFNG 155
             VTM + ++ + A  +FNG
Sbjct:   144 VTMQNPDDADRARAEFNG 161


>UNIPROTKB|G5EEW7 [details] [associations]
            symbol:asd-1 "RNA-binding protein ASD-1" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00390000013767 KO:K14946 HSSP:P33240
            EMBL:Z36238 EMBL:DQ485531 PIR:T24255 RefSeq:NP_497841.1
            UniGene:Cel.17456 SMR:G5EEW7 IntAct:G5EEW7 EnsemblMetazoa:R74.5a
            GeneID:175542 KEGG:cel:CELE_R74.5 CTD:175542 WormBase:R74.5a
            OMA:QRRFAPY NextBio:888594 Uniprot:G5EEW7
        Length = 404

 Score = 111 (44.1 bits), Expect = 9.7e-06, P = 9.7e-06
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query:    83 SDEDGSNFSPD--LKLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGF 137
             +D   S+ S D   +L V N+PF      L  +FE  G   +VE++  ++  G S+GFGF
Sbjct:    87 NDRSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNER--G-SKGFGF 143

Query:   138 VTMSSVEEVEAAAQQFNG 155
             VTM + ++ + A  +FNG
Sbjct:   144 VTMQNPDDADRARAEFNG 161


>SGD|S000003391 [details] [associations]
            symbol:NSR1 "Nucleolar protein that binds nuclear
            localization sequences" species:4932 "Saccharomyces cerevisiae"
            [GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006950 "response to stress"
            evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
            GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
            GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
            OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
            EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
            ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
            MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
            EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
            HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
            GermOnline:YGR159C Uniprot:P27476
        Length = 414

 Score = 111 (44.1 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 28/86 (32%), Positives = 40/86 (46%)

Query:    72 SSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVT 129
             + E + EE     +          +FVG L +S+D   L   FE  G V    VIY++ T
Sbjct:   146 AEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGT 205

Query:   130 GRSRGFGFVTMSSVEEVEAAAQQFNG 155
              RSRG+G+V   +    E A Q+  G
Sbjct:   206 DRSRGYGYVDFENKSYAEKAIQEMQG 231

 Score = 92 (37.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query:    92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDK--VTGRSRGFGFVTMSSVEEVEAA 149
             P   LF+GNL F+ D   +  LF   G V  V       T + +GFG+V  S++E+ + A
Sbjct:   265 PSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 324

Query:   150 AQQFNG-YVSNK 160
                  G Y+ N+
Sbjct:   325 LDALQGEYIDNR 336

 Score = 37 (18.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query:    60 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPD 93
             SS S    + + SSE + E +  S+   S+ S D
Sbjct:    30 SSSSESSSSSSSSSESESESESESESSSSSSSSD 63


>UNIPROTKB|F1M0H6 [details] [associations]
            symbol:F1M0H6 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
            Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
        Length = 360

 Score = 110 (43.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 31/74 (41%), Positives = 40/74 (54%)

Query:    95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
             KLF+G L F      L   F+  G +   +V+ D  T  SRGFGFVT S VEEV+AA   
Sbjct:    33 KLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMCA 92

Query:   153 FNGYVSNKL-SPKK 165
             +   V  ++  PKK
Sbjct:    93 WLHKVDGRVVEPKK 106


>UNIPROTKB|K7EQ02 [details] [associations]
            symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
            Ensembl:ENST00000592453 Uniprot:K7EQ02
        Length = 225

 Score = 106 (42.4 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 28/81 (34%), Positives = 42/81 (51%)

Query:    88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMV-IYDKVTGRSRGFGFVTMSSVEE 145
             S+ S   K+FVG +P +    +L   F+  G V E+V IYD    R RGFGF+T    + 
Sbjct:    85 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 144

Query:   146 VEAAAQQ-FNGYVSNKLSPKK 165
             V+ A    F+  +  K+  K+
Sbjct:   145 VDQAVNMHFHDIMGKKVEVKR 165

WARNING:  HSPs involving 617 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.129   0.356    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      166       123   0.00091  102 3  11 23  0.43    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  867
  No. of states in DFA:  465 (50 KB)
  Total size of DFA:  96 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.26u 0.16s 13.42t   Elapsed:  00:00:01
  Total cpu time:  13.28u 0.16s 13.44t   Elapsed:  00:00:01
  Start:  Fri May 10 09:27:53 2013   End:  Fri May 10 09:27:54 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT2G37220 AT2G37220 AT2G37220	protein from Arabidopsis thaliana	1.4e-32
BLAST match view associations BLAST with CP31B CP31B CP31B AT5G50250	protein from Arabidopsis thaliana	4.1e-17
BLAST match view associations BLAST with RBP31 RBP31 RBP31 AT4G24770	protein from Arabidopsis thaliana	1.4e-15
BLAST match view associations BLAST with CP33 CP33 CP33 AT3G52380	protein from Arabidopsis thaliana	3.3e-14
BLAST match view associations BLAST with AT1G60000 AT1G60000 AT1G60000	protein from Arabidopsis thaliana	1.2e-10
BLAST match view associations BLAST with PSRP2 PSRP2 PSRP2 AT3G52150	protein from Arabidopsis thaliana	2.4e-10
BLAST match view associations BLAST with MGG_01268 MGG_01268 MGG_01268 Nuclear localization sequence binding protein	protein from Magnaporthe oryzae 70-15	1.1e-09
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	1.4e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	6.1e-09
BLAST match view associations BLAST with RBM23 RBM23 RBM23 RNA binding motif protein 23, isoform CRA_f	protein from Homo sapiens	9.4e-09
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	9.7e-09
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	9.7e-09
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b	protein from Homo sapiens	9.7e-09
BLAST match view associations BLAST with AT2G35410 AT2G35410 AT2G35410	protein from Arabidopsis thaliana	1.1e-08
BLAST match view associations BLAST with rbm38 rbm38 rbm38 RNA binding motif protein 38	gene_product from Danio rerio	1.2e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f	protein from Homo sapiens	1.2e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	1.6e-08
BLAST match view associations BLAST with Rbm24 Rbm24 Rbm24 RNA binding motif protein 24	protein from Mus musculus	1.7e-08
BLAST match view associations BLAST with Rbm24 Rbm24 Rbm24 RNA binding motif protein 24	gene from Rattus norvegicus	1.7e-08
BLAST match view associations BLAST with Rbm39 Rbm39 Rbm39 RNA binding motif protein 39	gene from Rattus norvegicus	1.8e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 Uncharacterized protein	protein from Bos taurus	1.8e-08
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	1.8e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Bos taurus	1.8e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Sus scrofa	1.8e-08
BLAST match view associations BLAST with LOC100858247 LOC100858247 LOC100858247 Uncharacterized protein	protein from Gallus gallus	1.8e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 Uncharacterized protein	protein from Canis lupus familiaris	1.8e-08
BLAST match view associations BLAST with RBM39 RBM39 RBM39 RNA-binding protein 39	protein from Homo sapiens	1.8e-08
BLAST match view associations BLAST with Rbm39 Rbm39 Rbm39 RNA binding motif protein 39	protein from Mus musculus	1.8e-08
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	2.0e-08
BLAST match view associations BLAST with CG11266 CG11266 CG11266	protein from Drosophila melanogaster	2.1e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RBM24 protein	protein from Bos taurus	2.2e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Homo sapiens	2.2e-08
BLAST match view associations BLAST with rbm39a rbm39a rbm39a RNA binding motif protein 39a	gene_product from Danio rerio	2.3e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Gallus gallus	2.5e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Probable RNA-binding protein 23	protein from Homo sapiens	2.8e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Uncharacterized protein	protein from Canis lupus familiaris	2.8e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 Uncharacterized protein	protein from Sus scrofa	2.9e-08
BLAST match view associations BLAST with rbm24-b rbm24-b rbm24-b RNA-binding protein 24-B	protein from Xenopus laevis	3.0e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	3.1e-08
BLAST match view associations BLAST with rbm24-a rbm24-a rbm24-a RNA-binding protein 24-A	protein from Xenopus laevis	3.1e-08
BLAST match view associations BLAST with rbm24 rbm24 rbm24 RNA-binding protein 24	protein from Xenopus (Silurana) tropicalis	3.1e-08
BLAST match view associations BLAST with RBM23 RBM23 RBM23 Uncharacterized protein	protein from Sus scrofa	3.4e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	4.3e-08
BLAST match view associations BLAST with rbm24b rbm24b rbm24b RNA binding motif protein 24b	gene_product from Danio rerio	4.3e-08
BLAST match view associations BLAST with Rbm38 Rbm38 Rbm38 RNA binding motif protein 38	protein from Mus musculus	4.9e-08
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	6.3e-08
BLAST match view associations BLAST with Rbm38 Rbm38 Rbm38 RNA binding motif protein 38	gene from Rattus norvegicus	6.5e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.8e-08
BLAST match view associations BLAST with rbm24a rbm24a rbm24a RNA binding motif protein 24a	gene_product from Danio rerio	7.5e-08
BLAST match view associations BLAST with rbm39b rbm39b rbm39b RNA binding motif protein 39b	gene_product from Danio rerio	8.2e-08
BLAST match view associations BLAST with F1M2S4 F1M2S4 F1M2S4 Uncharacterized protein	protein from Rattus norvegicus	8.4e-08
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	8.7e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	1.1e-07
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	1.1e-07
BLAST match view associations BLAST with R06C1.4 R06C1.4 R06C1.4	gene from Caenorhabditis elegans	1.1e-07
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3	gene from Caenorhabditis elegans	1.1e-07
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3 Protein R09B3.3	protein from Caenorhabditis elegans	1.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.2e-07
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	1.4e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	1.4e-07
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	1.4e-07
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	1.4e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	1.6e-07
BLAST match view associations BLAST with AT5G09880 AT5G09880 AT5G09880	protein from Arabidopsis thaliana	1.7e-07
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	1.8e-07
BLAST match view associations BLAST with CG33714 CG33714 CG33714	protein from Drosophila melanogaster	2.3e-07
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	2.3e-07
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	2.3e-07
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	2.3e-07
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	2.3e-07
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.9e-07
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	2.9e-07
BLAST match view associations BLAST with G5E5V7 G5E5V7 G5E5V7 Uncharacterized protein	protein from Bos taurus	3.1e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	3.3e-07
BLAST match view associations BLAST with cpf-2 cpf-2 cpf-2	gene from Caenorhabditis elegans	3.5e-07
BLAST match view associations BLAST with orf19.6090 orf19.6090 orf19.6090	gene_product from Candida albicans	3.7e-07
BLAST match view associations BLAST with NSR1 NSR1 NSR1 Potential nuclear localization sequence binding protein Nsr1p	protein from Candida albicans SC5314	3.7e-07
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	3.7e-07
BLAST match view associations BLAST with DDB_G0287335 DDB_G0287335 DDB_G0287335 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	3.8e-07
BLAST match view associations BLAST with DDB_G0275027 DDB_G0275027 DDB_G0275027 SRA stem-loop-interacting RNA-binding protein, mitochondrial	gene from Dictyostelium discoideum	3.8e-07