BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031063
(166 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/163 (71%), Positives = 128/163 (78%), Gaps = 14/163 (8%)
Query: 1 MSTTSASSLVLPSLSPKTLAFYN-SKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLP 59
MST SASSLVLPSL+PKTL+ N +KP S S KL AKPISI SS SF PL
Sbjct: 1 MSTASASSLVLPSLNPKTLSLCNPNKPISLSF-------KLHAKPISIPSSLFSSFVPLQ 53
Query: 60 SSP----SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
P SRFV +VA+SSEF QEED+ SD D S+FS DLKLFVGNLPF+VDSAQLAGLFE
Sbjct: 54 QQPYSSSSRFVPSVAISSEFGQEEDVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFE 113
Query: 116 TAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
+AGNVEM VIYDKVTGRSRGFGFVTMSS++EVEAAAQQFNGY
Sbjct: 114 SAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGY 156
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL +SVD+ L F G V V+YD+ +GRSRGFGFVT SS EEVE A
Sbjct: 197 RLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDS 256
Query: 153 FNG 155
NG
Sbjct: 257 LNG 259
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 126/159 (79%), Gaps = 8/159 (5%)
Query: 1 MSTTSASSLVLPSLS-PKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLP 59
MS SASSLVLPSL+ P T+ + SKP S LS SS+ L KP+S+ SF H QPL
Sbjct: 1 MSAASASSLVLPSLNHPNTIKSFYSKPNSLFFLSPSSTSSL--KPVSLLLSFQHQQQPLS 58
Query: 60 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
S RF++NVA+SSEF QEED LSD D +FS DLKLFVGNLPF+VDSA+LAGLFETAGN
Sbjct: 59 S---RFLKNVAISSEFGQEEDFLSDGDEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGN 115
Query: 120 VEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VEM VIYDKVTGRSRGFGFVTM+++EEVEAA++QFNGY
Sbjct: 116 VEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGY 154
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
G F +++VGNL ++VD+ L LF G V V+YD+ +GRSRGFGFVT SS E
Sbjct: 182 GETFDSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAE 241
Query: 145 EVEAAAQQFNG 155
EV+ A NG
Sbjct: 242 EVDNAIDSLNG 252
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/157 (66%), Positives = 122/157 (77%), Gaps = 4/157 (2%)
Query: 3 TTSASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSP 62
+ SA+SL LPSL+ KTL+ N K FSL + SSS +LL+ PISISS + S + P
Sbjct: 2 SASAASLTLPSLTLKTLSSSNPKFKLFSL-NPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
Query: 63 SRFVRNVAVSSEFDQEEDLLS-DEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE 121
SRFVRNVAVSS++ QEE L D D S+++PDLKLFVGNLPF+VDSAQLAGLFE+AG VE
Sbjct: 61 SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
Query: 122 M--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VIYDK TGRSRGFGFVTMS+V EVEAAAQQFNGY
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGY 157
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 85 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSS 142
+ S F ++ V NL + VD L LF GNV V+YD+ +G+SRGFGFVT +S
Sbjct: 184 RNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNS 243
Query: 143 VEEVEAAAQQFNG 155
EEV A Q +G
Sbjct: 244 AEEVNEAIQSLDG 256
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 116/156 (74%), Gaps = 9/156 (5%)
Query: 3 TTSASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSP 62
+TSA+SL LP+L+ +T S P FS SS S KPISIS+ F+ +P S
Sbjct: 2 STSAASLALPTLTLRTRQPLCS-PQCFS---SSLSLTPNNKPISISAVFL---KPTTLSS 54
Query: 63 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM 122
SRFV +V VSS+ QEED SD DG +FSPDLKLFVGNLPF+VDSAQLA LFE+AGNVE+
Sbjct: 55 SRFVPHVVVSSDLGQEEDTFSDGDGPSFSPDLKLFVGNLPFNVDSAQLAELFESAGNVEV 114
Query: 123 --VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VIYDK TGRSRGFGFVTMSSVEE EAAAQQFNGY
Sbjct: 115 VEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQFNGY 150
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
++ V NL + VD+ L LF GNV VIYD+ +GRSRGFGFVT SS +EV +A Q
Sbjct: 193 RVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQS 252
Query: 153 FNG 155
NG
Sbjct: 253 LNG 255
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/160 (65%), Positives = 125/160 (78%), Gaps = 9/160 (5%)
Query: 1 MSTTSASSLVLPSLS-PKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIH-SFQPL 58
MS TSASSLVLPSL+ P T+ + SKPTS S LS SS+ + KP S+ SF QPL
Sbjct: 1 MSATSASSLVLPSLNHPNTIKSFYSKPTSLSFLSLSSTSSI--KPASLFLSFQQKQQQPL 58
Query: 59 PSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAG 118
S RF+++VA+SSEF QEED+ D D +FSPDL+LFVGNLPF+V+SAQLA LF++AG
Sbjct: 59 SS---RFLKSVAISSEFGQEEDVFGDGDEPSFSPDLQLFVGNLPFNVNSAQLADLFKSAG 115
Query: 119 NVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
NVEM V YDKVTGRSRGFGFVTMS++EEVEAA+QQFNGY
Sbjct: 116 NVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQFNGY 155
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
G F +++VGNL ++VD + L LF G V V+YD+ +GRS+GFGFVT SS E
Sbjct: 195 GETFDSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAE 254
Query: 145 EVEAAAQQFNG 155
EVE A NG
Sbjct: 255 EVEDAVDSLNG 265
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/145 (71%), Positives = 114/145 (78%), Gaps = 11/145 (7%)
Query: 17 KTLAFYNSKPTS---FSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSS 73
KTLA SKPTS FSL S SS KL + IS+S S F L S RFVRNVAVSS
Sbjct: 16 KTLAI--SKPTSVSFFSLPFSCSSLKLHSNSISLSPS-SRGFLTLSS---RFVRNVAVSS 69
Query: 74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGR 131
+++Q+ED+LSDE +FSPDLKLFVGNLPF+VDSA LAGLFE AGNVEM VIYDK+TGR
Sbjct: 70 DYEQDEDVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGR 129
Query: 132 SRGFGFVTMSSVEEVEAAAQQFNGY 156
SRGFGFVTMS+VEEVEAAAQQFNGY
Sbjct: 130 SRGFGFVTMSTVEEVEAAAQQFNGY 154
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
G+N + +++VGNL + VD L LF G V VIYD+ TGRSRGFGFVT +S E
Sbjct: 197 GANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAE 256
Query: 145 EVEAAAQQFNG 155
EV A + +G
Sbjct: 257 EVNRAIESLDG 267
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 108/148 (72%), Gaps = 10/148 (6%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSS 73
+PK+L F S+P S SLL S S KL + +S S + + S SRFVRNVA++S
Sbjct: 13 FNPKSLPFCVSRPASVSLLPPSLSFKLNSDSVSFSIAAKWN-----SPASRFVRNVAITS 67
Query: 74 EFDQEEDLLSDEDG---SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKV 128
EF+ EED +D+ +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMV IYDKV
Sbjct: 68 EFEVEEDGFADDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKV 127
Query: 129 TGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
TGRSRGFGFVTMSSV EVEAAA QFNGY
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAANQFNGY 155
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT +S +EV+ A
Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINS 264
Query: 153 FNG 155
NG
Sbjct: 265 LNG 267
>gi|301087136|gb|ADK60785.1| chloroplast ribonucleoprotein [Arachis diogoi]
Length = 146
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/116 (68%), Positives = 95/116 (81%), Gaps = 8/116 (6%)
Query: 43 KPISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLP 102
K SIS++F LP P+RFV NVA+ S+FDQ+E++LSD D +FSPDLKLFVGNLP
Sbjct: 23 KSASISTTF------LPLRPTRFVSNVALFSQFDQDEEILSDGDDRSFSPDLKLFVGNLP 76
Query: 103 FSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
FSVDSAQLA LFE+AG VE+ VIYDK++GRSRGFGFVTMSS+EE EAA QQF+GY
Sbjct: 77 FSVDSAQLAELFESAGTVEVVEVIYDKMSGRSRGFGFVTMSSIEEAEAAKQQFDGY 132
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 113/159 (71%), Gaps = 12/159 (7%)
Query: 3 TTSASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHS---FQPLP 59
+TSA+SL LP+L+ +T S P FS SS S +KPISIS+ F+ +
Sbjct: 2 STSAASLALPTLTLRTRQPLCS-PQCFS---SSLSLTPNSKPISISAVFLKTTLSSSSPL 57
Query: 60 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
S SRFV +V+V +QEED D DG +FS DLKLFVGNLPFSVDSA+LA LFE+AGN
Sbjct: 58 SLSSRFVPHVSV---LEQEEDTFGDGDGPSFSRDLKLFVGNLPFSVDSARLAELFESAGN 114
Query: 120 VEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VE+ VIYDK TGRSRGFGFVTMSSVEE EAAA+QFNGY
Sbjct: 115 VEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGY 153
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM---VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++ VGNL + VD L LF G + VIYD+ +GRSRGFGFVT S +EV++A Q
Sbjct: 196 RVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQ 255
Query: 152 QFNG 155
+G
Sbjct: 256 SLDG 259
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/99 (75%), Positives = 85/99 (85%), Gaps = 5/99 (5%)
Query: 63 SRFVRNVAVSSEFDQEEDLLSDEDGS---NFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
S FVR+V +SSEF+QEED++ D+D NFSPDLK+FVGNLPF+VDSA+LAGLF AG
Sbjct: 4 SSFVRHVRISSEFEQEEDVMGDDDAGRQPNFSPDLKIFVGNLPFNVDSAELAGLFGAAGT 63
Query: 120 VEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VEMV IYDK+TGRSRGFGFVTMSSVEEVEAAAQQFN Y
Sbjct: 64 VEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAAQQFNNY 102
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
++ VGNL + VD L LF G+V VIYD+ TGRSRGFGFVT +S EV A +
Sbjct: 136 RVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIES 195
Query: 153 FNGYVSNKLSPK 164
+G N S +
Sbjct: 196 LDGVDLNGRSIR 207
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 109/148 (73%), Gaps = 10/148 (6%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSS 73
+PK+L F S+P S SLLS S S KL + +S S + + S SRFVRNVA++S
Sbjct: 13 FNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWN-----SPASRFVRNVAITS 67
Query: 74 EFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKV 128
EF+ EED +D +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMV IYDK+
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 129 TGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
TGRSRGFGFVTMSSV EVEAAAQQFNGY
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGY 155
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT S +EV+ A +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 153 FNG 155
+G
Sbjct: 265 LDG 267
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor
gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 108/148 (72%), Gaps = 10/148 (6%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSS 73
+PK+L F S+P S SLLS S S KL + +S S + + S SRF RNVA++S
Sbjct: 13 FNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWN-----SPASRFARNVAITS 67
Query: 74 EFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKV 128
EF+ EED +D +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMV IYDK+
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 129 TGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
TGRSRGFGFVTMSSV EVEAAAQQFNGY
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGY 155
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT S +EV+ A +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 153 FNG 155
+G
Sbjct: 265 LDG 267
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645571|gb|AEE79092.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 363
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/156 (62%), Positives = 115/156 (73%), Gaps = 12/156 (7%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKP-ISI-SSSFIHSFQPLPSSPSRFVRNVAV 71
+PK+L S+P S S+L S S KL + +SI +SS + P PSRFVRNVAV
Sbjct: 11 FNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPA-EYPSRFVRNVAV 69
Query: 72 SSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV- 123
SS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMV
Sbjct: 70 SSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVE 129
Query: 124 -IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 158
IYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGYVS
Sbjct: 130 VIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVS 165
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 153 FNG 155
NG
Sbjct: 339 LNG 341
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/155 (61%), Positives = 114/155 (73%), Gaps = 12/155 (7%)
Query: 13 SLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKP-ISI-SSSFIHSFQPLPSSPSRFVRNVA 70
+ +PK+L S+P S S+L S S KL + +SI +SS + P PSRFVRNVA
Sbjct: 2 AFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPA-EYPSRFVRNVA 60
Query: 71 VSSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV 123
VSS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMV
Sbjct: 61 VSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMV 120
Query: 124 --IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
IYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGY
Sbjct: 121 EVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY 155
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A
Sbjct: 242 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 301
Query: 153 FNG 155
NG
Sbjct: 302 LNG 304
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/99 (73%), Positives = 79/99 (79%), Gaps = 7/99 (7%)
Query: 64 RFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
RFVR V +S +FDQ ED+ +DG NFSPDLK+FVGNLPFS DSA LA LFE AGN
Sbjct: 54 RFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGN 112
Query: 120 VEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VEMV IYDK+TGRSRGFGFVTMSS EEVEAA QQFNGY
Sbjct: 113 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF G V V+YD+ +GRSRGFGFVT SS EEV A +
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 153 FNG 155
+G
Sbjct: 249 LDG 251
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|186511018|ref|NP_850692.2| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein cp29; Flags: Precursor
gi|6729497|emb|CAB67653.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|18655393|gb|AAL76152.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|21593426|gb|AAM65393.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|332645568|gb|AEE79089.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645569|gb|AEE79090.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645570|gb|AEE79091.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 342
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 113/154 (73%), Gaps = 12/154 (7%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKP-ISI-SSSFIHSFQPLPSSPSRFVRNVAV 71
+PK+L S+P S S+L S S KL + +SI +SS + P PSRFVRNVAV
Sbjct: 11 FNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPA-EYPSRFVRNVAV 69
Query: 72 SSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV- 123
SS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMV
Sbjct: 70 SSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVE 129
Query: 124 -IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
IYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGY
Sbjct: 130 VIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY 163
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 153 FNG 155
NG
Sbjct: 318 LNG 320
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 113/154 (73%), Gaps = 12/154 (7%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKP-ISI-SSSFIHSFQPLPSSPSRFVRNVAV 71
+PK+L S+P S S+L S S KL + +SI +SS + P PSRFVRNVAV
Sbjct: 11 FNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPA-EYPSRFVRNVAV 69
Query: 72 SSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV- 123
SS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMV
Sbjct: 70 SSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVE 129
Query: 124 -IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
IYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGY
Sbjct: 130 VIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY 163
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 153 FNG 155
NG
Sbjct: 310 LNG 312
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
gi|297323759|gb|EFH54180.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
Length = 339
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 110/154 (71%), Gaps = 12/154 (7%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPIS--ISSSFIHSFQPLPSSPSRFVRNVAV 71
+PK+L S+P S S+L S S KL + I +SS + P P RFVRNVAV
Sbjct: 11 FNPKSLPLCVSRPASVSVLPPSLSFKLHSDHIVSLFASSAVKCSSPA-EYPLRFVRNVAV 69
Query: 72 SSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV- 123
SS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMV
Sbjct: 70 SSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVE 129
Query: 124 -IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
IYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGY
Sbjct: 130 VIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY 163
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A
Sbjct: 255 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 314
Query: 153 FNG 155
NG
Sbjct: 315 LNG 317
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 110/158 (69%), Gaps = 13/158 (8%)
Query: 3 TTSASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSP 62
+TSA+SLVLPSL F + P FS L S S + KP S SS S +P S
Sbjct: 2 STSATSLVLPSL------FTKNSPQCFSSLPSLSLNPNF-KPFSFSSV---SLRPSLSIS 51
Query: 63 SRFVRNVAVSSEFDQEEDLLSD-EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE 121
RF+ VAVSSEFDQEED D +D ++SP+ +LFVGNLPFSVDSAQLA +FE AG+VE
Sbjct: 52 HRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVE 111
Query: 122 MV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157
MV IYDK TGRSRGFGFVTMSS EVEAAAQQ NGYV
Sbjct: 112 MVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYV 149
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D ++ VGNL + VD+ L LF G V VIYD+ +GRSRGFGFVT SS +EV++A
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 151 QQFNG 155
+ +G
Sbjct: 255 RTLDG 259
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 110/158 (69%), Gaps = 13/158 (8%)
Query: 3 TTSASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSP 62
+TSA+SLVLPSL F + P FS L S S + KP S SS S +P S
Sbjct: 2 STSATSLVLPSL------FTKNSPQCFSSLPSLSLNPNF-KPFSFSSV---SLRPSLSIS 51
Query: 63 SRFVRNVAVSSEFDQEEDLLSD-EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE 121
RF+ VAVSSEFDQEED D +D ++SP+ +LFVG+LPFSVDSAQLA +FE AG+VE
Sbjct: 52 HRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGSLPFSVDSAQLAEIFENAGDVE 111
Query: 122 MV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157
MV IYDK TGRSRGFGFVTMSS EVEAAAQQ NGYV
Sbjct: 112 MVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYV 149
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D ++ VGNL + VD+ L LF G V VIYD+ +GRSRGFGFVT SS +EV++A
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 151 QQFNG 155
+ +G
Sbjct: 255 RTLDG 259
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 106/154 (68%), Gaps = 9/154 (5%)
Query: 6 ASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRF 65
A++L SLSP+ L+ + KPT + +++ L + ++S++ F+PL P R
Sbjct: 2 AATLFSTSLSPQFLSL-SVKPTPAAPSAAAFFPSGLPQLHAVSAA-AAGFRPL--EPVRA 57
Query: 66 VRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-- 123
AV+ E + E +E+ FS DL++FVGNLPFSVDSAQLAGLFE AG+VEMV
Sbjct: 58 AATAAVTEELEAEGQPGGEEE---FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV 114
Query: 124 IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157
IYDK+TGRSRGFGFVTMSSV+EVEAA +QFNGYV
Sbjct: 115 IYDKLTGRSRGFGFVTMSSVQEVEAAVEQFNGYV 148
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD++ LA LF G V ++YD+ +GRSRGFGFVT S EEVE A
Sbjct: 178 RVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISN 237
Query: 153 FNG 155
+G
Sbjct: 238 LDG 240
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 78/103 (75%), Gaps = 6/103 (5%)
Query: 56 QPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
+P SS F VA+S FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE
Sbjct: 53 KPFESS---FSTRVALSG-FDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFE 108
Query: 116 TAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
AGNVEM VIYDK+TGRSRGFGFVTMS+ EEVEAA QQFNGY
Sbjct: 109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGY 151
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF GNV V+YD+ +GRSRGFGFVT SS +EV A
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267
Query: 153 FNG 155
NG
Sbjct: 268 LNG 270
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 80/111 (72%), Gaps = 18/111 (16%)
Query: 63 SRFVRNVAVSSEFDQ-----------EEDLLSDEDGS----NFSPDLKLFVGNLPFSVDS 107
SRFVR V +S +FDQ EE LSDE S N +PDLK+FVGNLPFSVDS
Sbjct: 54 SRFVRKVTLS-DFDQIEEVEAGDDDEEEGGLSDEGASYEERNANPDLKIFVGNLPFSVDS 112
Query: 108 AQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
A LA LFE AG+VEMV IYDK+TGRSRGFGFVTMSS E VEAA QQFNGY
Sbjct: 113 AALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGY 163
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL +SVD QL LF G V V+YD+ +GRSRGFGFVT SS +EV A +
Sbjct: 205 RVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIES 264
Query: 153 FNG 155
+G
Sbjct: 265 LDG 267
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 76/106 (71%), Gaps = 8/106 (7%)
Query: 54 SFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
F+PL P R AV+ E + E G FS DL++FVGNLPFSVDSAQLAGL
Sbjct: 47 GFRPL--EPVRAAATAAVTEELEAE----GRSGGDEFSDDLRVFVGNLPFSVDSAQLAGL 100
Query: 114 FETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157
FE AG+VEMV IYDK+TGRSRGFGFVTMSSVEEVE A QFNGYV
Sbjct: 101 FEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQFNGYV 146
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD++ LA LF G V +IYD+ +GRSRGFGFVT S EEVE A
Sbjct: 178 RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISN 237
Query: 153 FNG 155
+G
Sbjct: 238 LDG 240
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 76/106 (71%), Gaps = 8/106 (7%)
Query: 54 SFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
F+PL P R AV+ E + E G FS DL++FVGNLPFSVDSAQLAGL
Sbjct: 49 GFRPL--EPVRAAATAAVTEELEAE----GRSGGDEFSDDLRVFVGNLPFSVDSAQLAGL 102
Query: 114 FETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157
FE AG+VEMV IYDK+TGRSRGFGFVTMSSVEEVE A QFNGYV
Sbjct: 103 FEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQFNGYV 148
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD++ LA LF G V +IYD+ +GRSRGFGFVT S EEVE A
Sbjct: 180 RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISN 239
Query: 153 FNG 155
+G
Sbjct: 240 LDG 242
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 71/86 (82%), Gaps = 2/86 (2%)
Query: 73 SEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTG 130
S+FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVE+ VIYDK++G
Sbjct: 67 SDFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSG 126
Query: 131 RSRGFGFVTMSSVEEVEAAAQQFNGY 156
RSRGFGFVTMS+ EEVEAA QQFNGY
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGY 152
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF GNV V+YD+ +GRSRGFGFVT SS +EV A
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268
Query: 153 FNG 155
NG
Sbjct: 269 LNG 271
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 76/106 (71%), Gaps = 8/106 (7%)
Query: 54 SFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
F+PL P R AV+ E + E G FS DL++FVGNLPFSVDSAQLAGL
Sbjct: 47 GFRPL--EPVRAAATAAVTEELEAE----GRSGGDEFSEDLRVFVGNLPFSVDSAQLAGL 100
Query: 114 FETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157
FE AG+VEMV IYDK+TGRSRGFGFVTMSSVEEVE A QFNGYV
Sbjct: 101 FEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQFNGYV 146
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD++ LA LF G V +IYD+ +GRSRGFGFVT S EEVE A
Sbjct: 178 RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISN 237
Query: 153 FNG 155
+G
Sbjct: 238 LDG 240
>gi|388499174|gb|AFK37653.1| unknown [Lotus japonicus]
Length = 302
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/160 (60%), Positives = 108/160 (67%), Gaps = 13/160 (8%)
Query: 1 MSTTSASSLVLPSLSPKTLAFYNSKP-TSFSLLSSSSSHKLLAKPISISSSFIHSFQPLP 59
MSTTSA+SL LP L + +P S LSSS K ISIS+ F+ S L
Sbjct: 1 MSTTSATSLALPILQTR-------QPLGSSQRLSSSFCLNPNFKSISISAVFLPS--TLS 51
Query: 60 SSPSRFVRNVAVSSEFDQEEDLLSDE-DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAG 118
S SRFV VAVSSEFDQEED SD+ + +F+PD K+FVGNLPFSVDSAQLA LF+ AG
Sbjct: 52 LSSSRFVTRVAVSSEFDQEEDTFSDDAETRSFAPDHKVFVGNLPFSVDSAQLAELFQDAG 111
Query: 119 NVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
NVE+ VIYDK TG SRGF FVTMSS E E AAQQFN Y
Sbjct: 112 NVEVVEVIYDKTTGNSRGFAFVTMSSAAEAEVAAQQFNNY 151
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
++ VGNL + VD+A L LF G V VIYD+ +GRSRGFGFVT SS +EV +A +
Sbjct: 219 RVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSSPDEVNSAIRS 278
Query: 153 FNG 155
+G
Sbjct: 279 LDG 281
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 65/70 (92%), Gaps = 2/70 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
FS DL++FVGNLPFSVDSAQLAGLFE AG+VEMV IYDK+TGRSRGFGFVTMSSVEEVE
Sbjct: 82 FSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVE 141
Query: 148 AAAQQFNGYV 157
AA +QFNGY+
Sbjct: 142 AAVEQFNGYI 151
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD+A LA LF G V VIYD+ +GRSRGFGFVT S EEVE A
Sbjct: 181 RVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSN 240
Query: 153 FNG 155
+G
Sbjct: 241 LDG 243
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 65/70 (92%), Gaps = 2/70 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
FS DL++FVGNLPFSVDSAQLAGLFE AG+VEMV IYDK+TGRSRGFGFVTMSSVEEVE
Sbjct: 82 FSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVE 141
Query: 148 AAAQQFNGYV 157
AA +QFNGY+
Sbjct: 142 AAVEQFNGYI 151
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD+A LA LF G V VIYD+ +GRSRGFGFVT S EEVE A
Sbjct: 181 RVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSN 240
Query: 153 FNG 155
+G
Sbjct: 241 LDG 243
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 74/97 (76%), Gaps = 9/97 (9%)
Query: 69 VAVSSEFDQEE-------DLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE 121
VAVSSEFD E+ + + +S DLK+FVGNLPF+VDSAQLAGLFE AG+VE
Sbjct: 55 VAVSSEFDTEDAEGEQSEGEGGGDSEAEYSEDLKVFVGNLPFTVDSAQLAGLFEQAGSVE 114
Query: 122 M--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
M V+YD++TGRSRGFGFVTM SVEEV AA +QFNGY
Sbjct: 115 MVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFNGY 151
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT S +EV A
Sbjct: 193 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 252
Query: 153 FNG 155
+G
Sbjct: 253 LDG 255
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 72/90 (80%), Gaps = 5/90 (5%)
Query: 69 VAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYD 126
VAVSSE+ E +++ FS DLKLFVGNLPFSVDSAQLAGLFE AG+VEM V+YD
Sbjct: 55 VAVSSEYGTEG---AEQQDGEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYD 111
Query: 127 KVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
++TGRSRGFGFVTMSS EE AA +QFNGY
Sbjct: 112 RMTGRSRGFGFVTMSSAEEAGAAVEQFNGY 141
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT S EEV A
Sbjct: 184 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISN 243
Query: 153 FNG 155
+G
Sbjct: 244 LDG 246
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 75/99 (75%), Gaps = 7/99 (7%)
Query: 64 RFVRNVAVSSEFDQ----EEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
RFVR V + +FDQ E+ E+ NFSPDLK+FVGNL FS DSA LA LFE AGN
Sbjct: 54 RFVRKVTLP-DFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGN 112
Query: 120 VEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VEMV IYDK+TGRSRGFGFVTMSS EEVEAA QQFNGY
Sbjct: 113 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF G V V+YD+ +GRSRGFGFVT SS EEV A +
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 153 FNG 155
+G
Sbjct: 255 LDG 257
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 74/99 (74%), Gaps = 16/99 (16%)
Query: 69 VAVSSEFDQEEDLLSDEDGSN---------FSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
VAVSSEF+ E D +G +S DLKLFVGNLPF+VDSAQLAGLFE AG+
Sbjct: 55 VAVSSEFETE-----DAEGQEEAGGESEAEYSEDLKLFVGNLPFTVDSAQLAGLFEQAGS 109
Query: 120 VEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VEM V+YD++TGRSRGFGFVTMS+ EEV AA +QFNGY
Sbjct: 110 VEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQFNGY 148
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT S +EV A
Sbjct: 190 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 249
Query: 153 FNG 155
+G
Sbjct: 250 LDG 252
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 83/116 (71%), Gaps = 12/116 (10%)
Query: 44 PISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSN-FSPDLKLFVGNLP 102
P ++S+ F+P+ VAVSSE+ E EDGS FS DLKLFVGNLP
Sbjct: 37 PRAVSAPGRRVFEPVA---------VAVSSEYKTEGAEQEGEDGSEEFSEDLKLFVGNLP 87
Query: 103 FSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
FSVDSAQLAGLFE AG+VEM V+YD++TGRSRGFGFVTMSS EE EAA +QFNGY
Sbjct: 88 FSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAEAAVEQFNGY 143
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT S +EV A
Sbjct: 185 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAISN 244
Query: 153 FNG 155
+G
Sbjct: 245 LDG 247
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 77/102 (75%), Gaps = 5/102 (4%)
Query: 60 SSPSRFVRN---VAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFET 116
S+P R V VAVSSE++ E +E FS DLKLFVGNLPFSVDSAQLAGLFE
Sbjct: 41 SAPGRRVFEPVAVAVSSEYETEGAEQEEEGAEEFSEDLKLFVGNLPFSVDSAQLAGLFEQ 100
Query: 117 AGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
AG+VEM V+YD++TGRSRGFGFVTMSS EE AA +QFNGY
Sbjct: 101 AGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGY 142
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT + EV A
Sbjct: 185 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISN 244
Query: 153 FNG 155
+G
Sbjct: 245 LDG 247
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 60/69 (86%), Gaps = 2/69 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVE 147
F+ DLK+FVGNLPFSVDSAQLAGLFE AG+VEM V+YD+ TGRSRGFGFVTMS+ EE
Sbjct: 71 FAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAG 130
Query: 148 AAAQQFNGY 156
AA +QFNGY
Sbjct: 131 AAVEQFNGY 139
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
GSNF KL+VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT S E
Sbjct: 168 GSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAE 227
Query: 145 EVEAAAQQFNG 155
EV A +G
Sbjct: 228 EVNNAISNLDG 238
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 60/69 (86%), Gaps = 2/69 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVE 147
F+ DLK+FVGNLPFSVDSAQLAGLFE AG+VEM V+YD+ TGRSRGFGFVTMS+ EE
Sbjct: 76 FAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAG 135
Query: 148 AAAQQFNGY 156
AA +QFNGY
Sbjct: 136 AAVEQFNGY 144
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
GSNF KL+VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT S E
Sbjct: 173 GSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAE 232
Query: 145 EVEAAAQQFNG 155
EV A +G
Sbjct: 233 EVNNAISNLDG 243
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 60/69 (86%), Gaps = 2/69 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVE 147
F+ DLK+FVGNLPFSVDSAQLAGLFE AG+VEM V+YD+ TGRSRGFGFVTMS+ EE
Sbjct: 17 FAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAG 76
Query: 148 AAAQQFNGY 156
AA +QFNGY
Sbjct: 77 AAIEQFNGY 85
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
GSNF KL+VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT S E
Sbjct: 114 GSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAE 173
Query: 145 EVEAAAQQFNG 155
EV A +G
Sbjct: 174 EVNNAISNLDG 184
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 100/150 (66%), Gaps = 24/150 (16%)
Query: 13 SLSPKTLAFYNS--KPTSFSLLSSS-SSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNV 69
SLSP+ L+ +S KP +L S H+ LA S+ + H PL + V
Sbjct: 9 SLSPQFLSLPSSSFKPVPSALFPSKIPQHRALA-----SAGWRHPLAPLAVA-------V 56
Query: 70 AVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDK 127
AVSS+ + E +++E FS DL++FVGNLPFSVDSAQLAGLFE AG+VEM VIYDK
Sbjct: 57 AVSSDVETE---VAEE----FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDK 109
Query: 128 VTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157
+TGRSRGFGFVTMS+VEEVE A ++ NGYV
Sbjct: 110 LTGRSRGFGFVTMSTVEEVEEAVERLNGYV 139
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D +++VGNL ++VD + LA LF G+V VIYD+ +GRSRGFGFVT + +EV+ A
Sbjct: 182 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 241
Query: 151 QQFNG 155
+G
Sbjct: 242 SNLDG 246
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 75/91 (82%), Gaps = 5/91 (5%)
Query: 69 VAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYD 126
VA+SS+ + ++ ++E FS DL++FVGNLPFSVDSAQLAGLFE AG+VEM VIYD
Sbjct: 55 VALSSDVETDD---AEESAGEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYD 111
Query: 127 KVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157
K+TGRSRGFGFVTMS+VEEVE A +Q NGYV
Sbjct: 112 KLTGRSRGFGFVTMSTVEEVEEAVEQLNGYV 142
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D +++VGNL ++VD + LA LF G+V VIYD+ +GRSRGFGFVT S EEVE A
Sbjct: 186 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEVEKAV 245
Query: 151 QQFNG 155
+G
Sbjct: 246 SNLDG 250
>gi|359481379|ref|XP_003632613.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 2 [Vitis
vinifera]
Length = 254
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/118 (62%), Positives = 86/118 (72%), Gaps = 11/118 (9%)
Query: 17 KTLAFYNSKPTS---FSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSS 73
KTLA SKPTS FSL S SS KL + IS+S S F L S RFVRNVAVSS
Sbjct: 16 KTLAI--SKPTSVSFFSLPFSCSSLKLHSNSISLSPS-SRGFLTLSS---RFVRNVAVSS 69
Query: 74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGR 131
+++Q+ED+LSDE +FSPDLKLFVGNLPF+VDSA LAGLFE AGNVEMV +++ GR
Sbjct: 70 DYEQDEDVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMV--EELEGR 125
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
G+N + +++VGNL + VD L LF G V VIYD+ TGRSRGFGFVT +S E
Sbjct: 163 GANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAE 222
Query: 145 EVEAAAQQFNG 155
EV A + +G
Sbjct: 223 EVNRAIESLDG 233
>gi|217072826|gb|ACJ84773.1| unknown [Medicago truncatula]
Length = 232
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 97/184 (52%), Gaps = 28/184 (15%)
Query: 2 STTSASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKP---ISISSSFIHSFQPL 58
S T A S +L S S SKPT FSL S S + L K ISIS S + Q
Sbjct: 12 SLTMAESCLLSSQS-------KSKPTFFSLPSKSLNLHLSLKTNRSISISPSPLFVAQEG 64
Query: 59 PSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSP---------DLKLFVGNLPFSVDSAQ 109
+ + +S +++ D E G++ S D KLFVGN PF VDS +
Sbjct: 65 DTLTTSLDEEAGLSLDWEPTADAAETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEK 124
Query: 110 LAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY-------VSNK 160
LA LF AG VE+ VIY++ T SRGFGFVTM++VEE E+A ++FNGY V NK
Sbjct: 125 LAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVNK 184
Query: 161 LSPK 164
SPK
Sbjct: 185 ASPK 188
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 97/184 (52%), Gaps = 28/184 (15%)
Query: 2 STTSASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKP---ISISSSFIHSFQPL 58
S T A S +L S S SKPT FSL S S + L K ISIS S + Q
Sbjct: 12 SLTMAESCLLSSQS-------KSKPTFFSLPSKSLNLHLSLKTNRSISISPSPLFVAQEG 64
Query: 59 PSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSP---------DLKLFVGNLPFSVDSAQ 109
+ + +S +++ D E G++ S D KLFVGN PF VDS +
Sbjct: 65 DTLTTSLDEEAGLSLDWEPTADAAETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEK 124
Query: 110 LAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY-------VSNK 160
LA LF AG VE+ VIY++ T SRGFGFVTM++VEE E+A ++FNGY V NK
Sbjct: 125 LAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVNK 184
Query: 161 LSPK 164
SPK
Sbjct: 185 ASPK 188
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P L+++V NL + VD+++L +F G + V+YD+ TGRSRGFGFVTMS E+
Sbjct: 202 FEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMN 261
Query: 148 AAAQQFNG 155
A +G
Sbjct: 262 DAIAALDG 269
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 94/177 (53%), Gaps = 19/177 (10%)
Query: 1 MSTTSASSLVLPSLSPKTLAFYNSKPTSFSL----------LSSSSSHKLLAKPISISSS 50
MS TS + L SL+ L +KPTSFSL L+SS S L K +
Sbjct: 1 MSVTSTTPL-FKSLTIAALFHNKTKPTSFSLPSKPFKFHISLNSSPSLTLSLKTNRATPL 59
Query: 51 FI-HSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDED--GSNF---SPDLKLFVGNLPFS 104
F + L + + E + E+ ED G +F S D KLFVGNLP+
Sbjct: 60 FAAQEGETLTTEEGVVETEGLIDWEPEAAENETGGEDYAGGDFAEPSEDAKLFVGNLPYD 119
Query: 105 VDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159
VDS +LA LFE AG VE+ VIY++ T +SRGFGFVTMS+VEE EA A +FN Y N
Sbjct: 120 VDSEKLAMLFEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAKFNRYDYN 176
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P L+++VGNL + +D ++L +F G V V+YD+ TGRSRGFGFVTMS +E+
Sbjct: 202 FEPVLRVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMN 261
Query: 148 AAAQQFNGYV 157
A +G +
Sbjct: 262 DAIAALDGQI 271
>gi|383142223|gb|AFG52471.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S D+K+FVGNLP+SVDSA+LA LF+ AG+V M VIYD+ TGRSRGF FVTM++ E+ ++
Sbjct: 14 SADIKVFVGNLPWSVDSAELAELFKDAGDVTMVEVIYDRQTGRSRGFAFVTMATQEDADS 73
Query: 149 AAQQFNGY 156
A ++ NGY
Sbjct: 74 AVEKLNGY 81
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 102/182 (56%), Gaps = 33/182 (18%)
Query: 7 SSLVLPSLSPKTLAFYNSK-------PTSFSLLSSSSSHK----LLAKPISISSSFIHSF 55
SS++ PSL K LA NS P+ F++ SSS SH+ L ++P++++ S + S
Sbjct: 3 SSVLTPSL--KLLAMTNSSSSTLFCIPSIFNI-SSSESHRFNFSLSSRPVNLTLS-LKSK 58
Query: 56 QPLPSSPS-RFVRNVAVSSEFDQEEDL------------LSDEDGSNFSP---DLKLFVG 99
SSP FV + +E ++ ED EDG F + KLFVG
Sbjct: 59 TLRNSSPVVTFVSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVG 118
Query: 100 NLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157
NLP+ VDS LA LFE AG VE+ VIY++ T +SRGFGFVTMS+VEE E A ++FN +
Sbjct: 119 NLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFE 178
Query: 158 SN 159
N
Sbjct: 179 VN 180
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+++VGNLP+ VDS +L LF G V V+ D+ TGRSRGFGFV MS+ EV A
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 152 QFNG 155
+G
Sbjct: 267 ALDG 270
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S DLK+FVGNLPF VDS +LA LFE +G VE+ VIY++ T RSRGFGFVTMS+ EEVE
Sbjct: 119 SEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVER 178
Query: 149 AAQQFNGY 156
A +F+G+
Sbjct: 179 AVNKFSGF 186
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 7/73 (9%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVE 147
F+ L+ +VGNLP+ VD++ L LF G VE V+YD+ TGR RGFGFVTMS+ E+
Sbjct: 212 FNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMN 271
Query: 148 AA-----AQQFNG 155
A Q FNG
Sbjct: 272 DAIAALDGQSFNG 284
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 61/92 (66%), Gaps = 12/92 (13%)
Query: 85 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVT 139
E G FS + KLFVGNLP+ VDS +LAG+F+ AG VE+ VIY++ T RSRGFGFVT
Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102
Query: 140 MSSVEEVEAAAQQFNGY-------VSNKLSPK 164
MS+VEE E A + NGY NK +P+
Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 134
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEE 145
+F P +++VGNLP+ VD+++L LF G V V+ D+ TGRSRGFGFVTMSS E
Sbjct: 143 GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESE 202
Query: 146 VEAAAQQFNG 155
V A +G
Sbjct: 203 VNDAIAALDG 212
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 41/198 (20%)
Query: 1 MSTTSASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPS 60
M+T++A++ L +L+ ++ KPTS S +L KP + +S F + L
Sbjct: 1 MATSTATNHFLKTLA---ISITTQKPTSIFPPKS----LVLEKPTTNNSQFHYKTHHLCC 53
Query: 61 ----SPSRFVRNVAVSSEFDQEEDLLSDEDGSNF---------------------SPDLK 95
S F + + ++ D+EE++ E N+ S D+K
Sbjct: 54 MCCLQTSDFEQESSPNAVIDEEENVEKTEAAVNWEDASEPQPSSGFGSEDGFSEPSEDVK 113
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLPF VDS +LA +F+ AG VE+ VIY++ T RSRGFGFVTMS+VEE + A + F
Sbjct: 114 LYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEMF 173
Query: 154 NGY-------VSNKLSPK 164
+ Y NK +P+
Sbjct: 174 HSYELNGRLLTVNKAAPR 191
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 97 FVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+VGNLP+ VD+ +L L G V V+ D+ T RSRGFGFVTM+S E+ A
Sbjct: 210 YVGNLPWDVDNDRLEQLSSEHGKVLSARVVSDRETERSRGFGFVTMASETEMNDA 264
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 61/92 (66%), Gaps = 12/92 (13%)
Query: 85 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVT 139
E G FS + KLFVGNLP+ VDS +LAG+F+ AG VE+ VIY++ T RSRGFGFVT
Sbjct: 36 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 95
Query: 140 MSSVEEVEAAAQQFNGY-------VSNKLSPK 164
MS+VEE E A + NGY NK +P+
Sbjct: 96 MSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 127
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEE 145
+F P +++VGNLP+ VD+++L LF G V V+ D+ TGRSRGFGFVTMSS E
Sbjct: 136 GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESE 195
Query: 146 VEAAAQQFNG 155
V A +G
Sbjct: 196 VNDAIAALDG 205
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 57/80 (71%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K+FVGNLPF DS +LA LFE AG VE+ VIY++ T RSRGFGFVTMS++EE+E A +
Sbjct: 122 VKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVK 181
Query: 152 QFNGY-------VSNKLSPK 164
F+GY NK +PK
Sbjct: 182 MFSGYELNGRVLTVNKAAPK 201
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+++VGNLP+ VD+++L +F G VE V+YD+ TGRSRGFGFVTMSS ++ A
Sbjct: 215 FRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIA 274
Query: 152 QFNG 155
+G
Sbjct: 275 ALDG 278
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 57/80 (71%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K+FVGNLPF DS +LA LFE AG VE+ VIY++ T RSRGFGFVTMS++EE+E A +
Sbjct: 124 VKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVK 183
Query: 152 QFNGY-------VSNKLSPK 164
F+GY NK +PK
Sbjct: 184 MFSGYELNGRVLTVNKAAPK 203
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+++VGNLP+ VD+++L +F G VE V+YD+ TGRSRGFGFVTMSS ++ A
Sbjct: 217 FRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIA 276
Query: 152 QFNG 155
+G
Sbjct: 277 ALDG 280
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 57/76 (75%), Gaps = 5/76 (6%)
Query: 86 DGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTM 140
+G ++ P KL+VGNLPF +DS LA +F+ +G VEMV IYD+ +GRSRGF FVTM
Sbjct: 148 EGQDYPPLPEGTKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTM 207
Query: 141 SSVEEVEAAAQQFNGY 156
S+VEE EAA ++FNG+
Sbjct: 208 STVEEAEAAIKKFNGF 223
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +SV S L GNV VI D+ TGRSRGFGFV+ SS EVEAA +
Sbjct: 262 KVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSE 321
Query: 153 FNG 155
+G
Sbjct: 322 MDG 324
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 57/76 (75%), Gaps = 5/76 (6%)
Query: 86 DGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTM 140
+G ++ P KL+VGNLPF +DS LA +F+ +G VEMV IYD+ +GRSRGF FVTM
Sbjct: 156 EGQDYPPLPEGTKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTM 215
Query: 141 SSVEEVEAAAQQFNGY 156
S+VEE EAA ++FNG+
Sbjct: 216 STVEEAEAAIKKFNGF 231
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +SV S L GNV VI D+ TGRSRGFGFV+ SS EVEAA +
Sbjct: 270 KVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSE 329
Query: 153 FNG 155
+G
Sbjct: 330 MDG 332
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 84/140 (60%), Gaps = 25/140 (17%)
Query: 42 AKPISISSSFIHSFQPL----PSSPSRFVRNVAVSSEFDQEED---LLSDEDG-SNFSP- 92
+KP+++ S ++S L P+ S V VA +S++ Q+E+ L E G ++ P
Sbjct: 34 SKPLTLQFSCLNSSVSLSLAAPTHRSPLVTFVAQTSDWAQQEEEQSLAETEAGLESWEPN 93
Query: 93 --------------DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFG 136
+ KLFVGNLP+ VDS +LA LFE AG VE+ VIY++ T +SRGFG
Sbjct: 94 GEDAGDESFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFG 153
Query: 137 FVTMSSVEEVEAAAQQFNGY 156
FVTMS+VEE E+A ++FN Y
Sbjct: 154 FVTMSTVEEAESAVEKFNRY 173
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F L ++VGNLP+ VD+ +L +F GNV V+YD+ +GRSRGFGFVTMS E+
Sbjct: 201 FESSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMN 260
Query: 148 AAAQQFNG 155
A +G
Sbjct: 261 DAVAALDG 268
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 55/81 (67%), Gaps = 9/81 (11%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D KLFVGNLP+ +DS +LA LFE AG VE+ VIY++ T RSRGFGFVTMS+VEE E A
Sbjct: 151 DAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 210
Query: 151 QQFNGY-------VSNKLSPK 164
FN Y NK +P+
Sbjct: 211 DTFNRYDLSGRLLTVNKAAPR 231
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VD+ +L LF G V V+YD+ +GRSRGFGFVTM+ +
Sbjct: 242 FQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMN 301
Query: 148 AAAQQFNG 155
A +G
Sbjct: 302 DAIAALDG 309
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 55/81 (67%), Gaps = 9/81 (11%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D KLFVGNLP+ +DS +LA LFE AG VE+ VIY++ T RSRGFGFVTMS+VEE E A
Sbjct: 145 DAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 204
Query: 151 QQFNGY-------VSNKLSPK 164
FN Y NK +P+
Sbjct: 205 DTFNRYDLSGRLLTVNKAAPR 225
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VD+ +L LF G V V+YD+ +GRSRGFGFVTM+ +
Sbjct: 236 FQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMN 295
Query: 148 AAAQQFNG 155
A +G
Sbjct: 296 DAIAALDG 303
>gi|383142219|gb|AFG52469.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S D+K+FVGNLP+SVDSA+LA LF+ G+V MV IYD+ TGRSRGF FVTM++ E+ ++
Sbjct: 14 SADIKVFVGNLPWSVDSAELAELFKDPGDVTMVEVIYDRQTGRSRGFAFVTMATQEDADS 73
Query: 149 AAQQFNGY 156
A ++ NGY
Sbjct: 74 AVEKLNGY 81
>gi|383142217|gb|AFG52468.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S D+K+FVGNLP+SVDSA+LA LF+ G+V MV IYD+ TGRSRGF FVTM++ E+ ++
Sbjct: 14 SADIKVFVGNLPWSVDSAKLAELFKDPGDVTMVEVIYDRQTGRSRGFAFVTMATQEDADS 73
Query: 149 AAQQFNGY 156
A ++ NGY
Sbjct: 74 AVEKLNGY 81
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S +LK+FVGNLP+SVDSA+LA LF+ +G+V M VIYD+ TGRSRGF FVTM++ + +
Sbjct: 110 SANLKVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADE 169
Query: 149 AAQQFNGY 156
A ++FNGY
Sbjct: 170 AVEKFNGY 177
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
N++ ++FVGNLP+ D L LF G V V+YD+ TGRSRGFGFVT+SS +E+
Sbjct: 211 NYNSANRVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEI 270
Query: 147 EAAAQQFNG 155
E A +G
Sbjct: 271 EEAISSLDG 279
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 85 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVT 139
EDG F + KLFVGNLP+ VDS LA LFE AG VE+ VIY++ T +SRGFGFVT
Sbjct: 101 EDGGKFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVT 160
Query: 140 MSSVEEVEAAAQQFNGYVSN 159
MS+VEE + A ++FN Y N
Sbjct: 161 MSTVEEAKKAVEKFNRYEVN 180
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+++VGNLP+ VD+ +L +F G V V+YD+ TGRSRGFGFVTMS+ EV A
Sbjct: 207 FRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIA 266
Query: 152 QFNG 155
+G
Sbjct: 267 ALDG 270
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 69/124 (55%), Gaps = 27/124 (21%)
Query: 63 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSP-------------------------DLKLF 97
S V VA +SE+DQE E+GS+ P D KLF
Sbjct: 55 STVVTYVAQTSEWDQEGTNAVLEEGSDQEPSWGNTEAQVSDFGSDEGEGFQEPPEDAKLF 114
Query: 98 VGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
VGNLPF VDS +LA +FE AG VE+ VIY++ T RSRGFGFVTMS+VEE E A + ++
Sbjct: 115 VGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELYHK 174
Query: 156 YVSN 159
+ N
Sbjct: 175 FEVN 178
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD A+L +F G V V+ D+ TGRSRGF FVTM+S E+
Sbjct: 201 YEPSFRVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMN 260
Query: 148 AAAQQFNG 155
A +G
Sbjct: 261 EAIGALDG 268
>gi|383142221|gb|AFG52470.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
gi|383142225|gb|AFG52472.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S D+K+FVGNLP+SVDSA+LA LF+ AG+V M VIYD+ TGRS GF FVTM+ E+ ++
Sbjct: 14 SADIKVFVGNLPWSVDSAELAELFKDAGDVTMVEVIYDRQTGRSCGFAFVTMAMQEDADS 73
Query: 149 AAQQFNGY 156
A ++ NGY
Sbjct: 74 AVEKLNGY 81
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVGNLPF +DS LA LF AG VE+ VIY++ T RSRGFGFVTMS++EE++ A +
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 153 FNGY-------VSNKLSPK 164
F+GY NK +PK
Sbjct: 178 FSGYELNGRVLTVNKAAPK 196
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVE 147
FS L+++VGNLP+ VD A+L +F G VE V+YD+ TGRSRGFGFVTMSS ++
Sbjct: 210 FSSGLRVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMN 269
Query: 148 AA 149
A
Sbjct: 270 DA 271
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 57/81 (70%), Gaps = 9/81 (11%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KLFVGNLP+ VDS +LA LFE AG VE+ VIY++ T +SRGFGFVTMS+VEE E A
Sbjct: 123 EAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAV 182
Query: 151 QQFNGY-------VSNKLSPK 164
++F+ Y NK SP+
Sbjct: 183 EKFSRYDFDGRLLTVNKASPR 203
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P L ++VGNLP+ VD+ +L +F GNV V+YD+ T RSRGFGFVTMS E++
Sbjct: 216 FEPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMK 275
Query: 148 AAAQQFNG 155
A +G
Sbjct: 276 DAVAALDG 283
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVGNLPF +DS LA LF AG VE+ VIY++ T RSRGFGFVTMS++EE++ A +
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 153 FNGY-------VSNKLSPK 164
F+GY NK +PK
Sbjct: 178 FSGYELNGRVLTVNKAAPK 196
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVE 147
FS L+++VGNLP+ VD A+L +F G VE V+YD+ TGRSRGFGFVTMSS ++
Sbjct: 210 FSSGLRVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMN 269
Query: 148 AAAQQFNG 155
A +G
Sbjct: 270 DAIAALDG 277
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%), Gaps = 9/84 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S DLK+FVGNLP+ V+S LA LFE AG+VE VIY+K T +SRGFGFV MS+ E++E
Sbjct: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
Query: 149 AAQQFNGY-------VSNKLSPKK 165
A +F+GY NK +PK+
Sbjct: 177 ALNKFSGYELDGRVLTVNKATPKE 200
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++VGNLP+SVD+A+L +F GNVE ++ D+ TGRSRGFGFVTMSS ++ A
Sbjct: 223 VYVGNLPWSVDAARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
Query: 154 NG 155
+G
Sbjct: 283 DG 284
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 79 EDLLSDEDGSNFSPD-LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGF 135
ED E G + P+ KLFVGNLP+ VDS +LA +F+ AG VE+ VIY++ T RSRGF
Sbjct: 112 EDEEESEQGFSEPPEEAKLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETDRSRGF 171
Query: 136 GFVTMSSVEEVEAAAQQFNGYVSN 159
GFVTMS+VEE E A + NG+ N
Sbjct: 172 GFVTMSTVEEAEKAVEMLNGFDMN 195
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VD+A+L +F G V V+ D+ TGRSRGFGFV+M+S E+
Sbjct: 218 FEPSCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMN 277
Query: 148 AAAQQFNG 155
A +G
Sbjct: 278 DAIAALDG 285
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 72 SSEFDQEEDLLSDEDGS----NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIY 125
+ EFDQE + +E+G + + KL+VGNLP+S+ S++L +FE AG V VIY
Sbjct: 90 TDEFDQE---IVEEEGDVEAIKATEEGKLYVGNLPYSMTSSELTEVFEEAGRVFSAEVIY 146
Query: 126 DKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
D+VT RSRGFGFVTM SVEE + A Q FNG
Sbjct: 147 DRVTDRSRGFGFVTMGSVEEAKKAIQMFNG 176
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L F V VIY++ + RSRGFGFV+ S E EAA +
Sbjct: 217 KIYAGNLGWRLTSEGLRDAFANQPGVLSAKVIYERDSRRSRGFGFVSFESAENAEAALEA 276
Query: 153 FNG 155
NG
Sbjct: 277 MNG 279
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 60/91 (65%), Gaps = 12/91 (13%)
Query: 86 DGSNF---SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTM 140
+G+ F S + KLFVGNL + VDS LA LFE AG VE+ VIY++ T +SRGFGFVTM
Sbjct: 116 EGAEFPEPSEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTM 175
Query: 141 SSVEEVEAAAQQFNGY-------VSNKLSPK 164
S+VEE E A ++FN Y NK +P+
Sbjct: 176 STVEEAETAVEKFNRYDLNGRLLTVNKAAPR 206
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD+ +L +F G V V+YD+ TGRSRGFGFVTMS+ E+
Sbjct: 217 YEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELN 276
Query: 148 AAAQQFNG 155
A +G
Sbjct: 277 DAIAALDG 284
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 18/123 (14%)
Query: 60 SSPSRFVRNVAVSSEFDQEEDLL--------SDEDGSNFSPD-LKLFVGNLPFSVDSAQL 110
+SP+ V VA +S++ Q+E+ ED + P+ KLFVGNLP+ +DS +L
Sbjct: 50 TSPTTLVPFVAQTSDWAQQEEEEEKDGEESEGSEDTYSEPPEEAKLFVGNLPYDIDSEKL 109
Query: 111 AGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY-------VSNKL 161
A LF+ AG VE+ VIY++ T +SRGFGF+TMS+VEE E A + FN Y NK
Sbjct: 110 AQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKA 169
Query: 162 SPK 164
+P+
Sbjct: 170 APR 172
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VD A+L +F G V V+YD+ T RSRGFGFVTMSS E+
Sbjct: 183 FEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELN 242
Query: 148 AAAQQFNG 155
A +G
Sbjct: 243 DAIAALDG 250
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 56/81 (69%), Gaps = 9/81 (11%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KLFVGNLP+ +DS +LA LF+ AG VE+ VIY++ T +SRGFGF+TMS+VEE E A
Sbjct: 132 EAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAV 191
Query: 151 QQFNGY-------VSNKLSPK 164
+ FN Y NK +P+
Sbjct: 192 EMFNRYDLNGRFLTVNKAAPR 212
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VD A+L +F G V V+YD+ T RSRGFGFVTMSS E+
Sbjct: 223 FEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELN 282
Query: 148 AAAQQFNG 155
A +G
Sbjct: 283 DAIAALDG 290
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 28/140 (20%)
Query: 34 SSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDE--DG---- 87
+S S L +P+SI + H+ +P +S+ QEE L+ E DG
Sbjct: 35 ASVSQSYLVEPLSIGGTISHNKLWVPR----------ISAAVAQEEVALAAEADDGLVEE 84
Query: 88 ----------SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGF 135
+N S + KL+ GNLP+SVDSAQLAGL E G+ E+ V+YD+ +G+SRGF
Sbjct: 85 KVEEVVAEEEANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGF 144
Query: 136 GFVTMSSVEEVEAAAQQFNG 155
FVTMS VE+ + +G
Sbjct: 145 AFVTMSCVEDCNTVIENLDG 164
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V S L +F+ G V V+YD TGRSRG+GFV S E+E A
Sbjct: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
Query: 153 FN 154
N
Sbjct: 253 LN 254
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNLP+ VDS LA LFE AG VE+ VIY++ T +SRGFGFVTMS+VEE E A +
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 153 FNGYVSN 159
+N Y N
Sbjct: 197 YNRYDVN 203
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F +++VGN+P+ +D A+L LF G V V+YD+ TGRSRGFGFVTM+S E+
Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 285
Query: 148 AAAQQFNG 155
A +G
Sbjct: 286 DAIANLDG 293
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ +DS +LA LFE AG VE+ VIY++ T RSRGFGFVTMS+VEE E A +
Sbjct: 144 KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 203
Query: 153 FNGY-------VSNKLSPK 164
F+ Y NK +P+
Sbjct: 204 FHRYDVDGRLLTVNKAAPR 222
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F P +++VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFVTM++ EE+
Sbjct: 232 QFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEEL 291
Query: 147 EAAAQQFNG 155
+ A +G
Sbjct: 292 DDAIAALDG 300
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 55/81 (67%), Gaps = 9/81 (11%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K+FVGNLP+ VDS +LA LFE AG VE+ VIY++ T RSRGFGFV+MS+VEE E A
Sbjct: 126 EAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 185
Query: 151 QQFNGY-------VSNKLSPK 164
F+ Y NK +P+
Sbjct: 186 DMFHRYELDGRLLTVNKAAPR 206
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VDSA+L +F G V V++D+ TGRSRGFGFVTMSS E+E
Sbjct: 217 FEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELE 276
Query: 148 AAAQQFNG 155
A +G
Sbjct: 277 DAIAATDG 284
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 55/81 (67%), Gaps = 9/81 (11%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K+FVGNLP+ VDS +LA LFE AG VE+ VIY++ T RSRGFGFV+MS+VEE E A
Sbjct: 147 EAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 206
Query: 151 QQFNGY-------VSNKLSPK 164
F+ Y NK +P+
Sbjct: 207 DMFHRYELDGRLLTVNKAAPR 227
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VDSA+L +F G V V++D+ TGRSRGFGFVTMSS E+E
Sbjct: 238 FEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELE 297
Query: 148 AAAQQFNG 155
A +G
Sbjct: 298 DAIAATDG 305
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 83 SDEDGSNFSPD-LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVT 139
+ED P+ KLFVGNLP+ VD LA LF+ AG VE+ VIY++ T +SRGFGFVT
Sbjct: 109 GEEDSYPLPPEEAKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVT 168
Query: 140 MSSVEEVEAAAQQFNGY-------VSNKLSPK 164
MS+VEE E A + FN Y NK +P+
Sbjct: 169 MSTVEEAEKAVEMFNRYDINGRLLTVNKAAPR 200
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VD A+L +F G V V+YD+ TGRSRGFGFVTMS+ E++
Sbjct: 211 FEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELD 270
Query: 148 AAAQQFNG 155
A +G
Sbjct: 271 DAIAALDG 278
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K++VGNLP+ VDS +LA LF+ AG VE+ VIY+K +G+SRGFGFVTMS++EE + A
Sbjct: 104 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKAI 163
Query: 151 QQFNGY-VSNKL 161
+ FN Y +S +L
Sbjct: 164 ETFNRYNISGRL 175
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+ + +VGNLP+ + ++L +F G V ++YD+ TGRSRGFGFVTM+S E++
Sbjct: 194 QFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 253
Query: 147 EAAAQQFNG 155
++A +G
Sbjct: 254 DSAISALDG 262
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ +DS +LA LFE AG VE+ VIY++ T RSRGFGFVTMS+VEE E A +
Sbjct: 8 KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 67
Query: 153 FNGY-------VSNKLSPK 164
F+ Y NK +P+
Sbjct: 68 FHRYDVDGRLLTVNKAAPR 86
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F P +++VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFVTM++ EE+
Sbjct: 96 QFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEEL 155
Query: 147 EAAAQQFNG 155
+ A +G
Sbjct: 156 DDAIAALDG 164
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 55/81 (67%), Gaps = 9/81 (11%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D K+FVGNLP+ VDS +LA LFE AG VE+ VIY++ T SRGFGFV+MS+VEE E A
Sbjct: 140 DAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAV 199
Query: 151 QQFNGY-------VSNKLSPK 164
+ F+ + NK +P+
Sbjct: 200 EMFHRHDLDGRLLTVNKAAPR 220
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VD+A+L +F G V V+YD+ TGRSRGFGFVTMS+ E+
Sbjct: 231 FEPGYRIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELN 290
Query: 148 AAAQQFNG 155
A +G
Sbjct: 291 DAIAALDG 298
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVGNLP+ VDS +LA LFE AG VE+ VIY++ T RSRGFGFV+MS+VEE E A
Sbjct: 944 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDM 1003
Query: 153 FNGY-------VSNKLSPK 164
F+ Y NK +P+
Sbjct: 1004 FHRYELDGRLLTVNKAAPR 1022
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGNLP+ VDSA+L +F G V V++D+ TGRSRGFGFVTMSS E+E
Sbjct: 1033 FEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELE 1092
Query: 148 AAAQQFNG 155
A +G
Sbjct: 1093 DAIAATDG 1100
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ VDS +LA LF+ AG VE+ VIY++ +G+SRGFGFVTMS++EE + A +
Sbjct: 109 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIEM 168
Query: 153 FNGY-VSNKL 161
FN Y +S +L
Sbjct: 169 FNRYDISGRL 178
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+ + +VGNLP+ + ++L LF G V V+YD+ TGRSRGFGFVTM+S EE+
Sbjct: 197 QFASAFRAYVGNLPWQAEDSRLVQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKEEL 256
Query: 147 EAAAQQFNG 155
+ A +G
Sbjct: 257 DDAISALDG 265
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S D KLFVGNLP+ +DS LA LF+ AG VE+ VIY++ T RSRGFGFVTMS+VEE +
Sbjct: 94 SEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADK 153
Query: 149 AAQQFNGY-------VSNKLSPK 164
A + ++ Y NK +P+
Sbjct: 154 AVELYSQYDLNGRLLTVNKAAPR 176
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGN+P+ +D A+L +F G V V++D+ +GRSRGFGFVTMSS E+
Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMS 246
Query: 148 AAAQQFNG 155
A +G
Sbjct: 247 EAIANLDG 254
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLFVGNL + V+S LA LFE AG VE+ VIY++ T +SRGFGFVTMSSV+E E
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 149 AAQQFNGY-------VSNKLSPK 164
A ++FN Y NK +P+
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPR 229
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 148 AAAQQFNG 155
A +G
Sbjct: 300 EAISALDG 307
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLFVGNL + V+S LA LFE AG VE+ VIY++ T +SRGFGFVTMSSV+E E
Sbjct: 132 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 191
Query: 149 AAQQFNGY-------VSNKLSPK 164
A ++FN Y NK +P+
Sbjct: 192 AVEKFNRYDLNGRLLTVNKAAPR 214
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+
Sbjct: 225 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 284
Query: 148 AAAQQFNG 155
A +G
Sbjct: 285 EAISALDG 292
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K++VGNLP+ VDS +LA LF+ AG VE+ VIY++ +G+SRGFGFVTMS++EE + A
Sbjct: 104 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 163
Query: 151 QQFNGY-VSNKL 161
+ FN Y +S +L
Sbjct: 164 ETFNRYDISGRL 175
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+ + +VGNLP+ + ++L +F G V ++YD+ TGRSRGFGFVTM+S E++
Sbjct: 194 RFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 253
Query: 147 EAAAQQFNG 155
++A +G
Sbjct: 254 DSAISALDG 262
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLFVGNL + V+S LA LFE AG VE+ VIY++ T +SRGFGFVTMSSV+E E
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 149 AAQQFNGY-------VSNKLSPK 164
A ++FN Y NK +P+
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPR 229
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 148 AAAQQFNG 155
A +G
Sbjct: 300 EAISALDG 307
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K++VGNLP+ VDS +LA LF+ AG VE+ VIY++ +G+SRGFGFVTMS++EE + A
Sbjct: 104 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 163
Query: 151 QQFNGY-VSNKL 161
+ FN Y +S +L
Sbjct: 164 ETFNRYDISGRL 175
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+ + +VGNLP+ + ++L +F G V ++YD+ TGRSRGFGFVTM+S E++
Sbjct: 194 QFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 253
Query: 147 EAAAQQFNG 155
++A +G
Sbjct: 254 DSAISALDG 262
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 5/85 (5%)
Query: 80 DLLSDED-GSNFSP--DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRG 134
D+ ++E+ G P + K++VGNLP+ VDS +LA LFE AG VE+ VIY++ T +SRG
Sbjct: 99 DVAAEEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRG 158
Query: 135 FGFVTMSSVEEVEAAAQQFNGYVSN 159
FGFVTMS++EE E A + F+ Y N
Sbjct: 159 FGFVTMSTIEEAEKAVEMFHRYDVN 183
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 6/71 (8%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
GS+F +++VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFVTM+S E
Sbjct: 207 GSSF----RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 262
Query: 145 EVEAAAQQFNG 155
E++ A +G
Sbjct: 263 ELDDAIAALDG 273
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 5/85 (5%)
Query: 80 DLLSDED-GSNFSP--DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRG 134
D+ ++E+ G P + K++VGNLP+ VDS +LA LFE AG VE+ VIY++ T +SRG
Sbjct: 99 DVAAEEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRG 158
Query: 135 FGFVTMSSVEEVEAAAQQFNGYVSN 159
FGFVTMS++EE E A + F+ Y N
Sbjct: 159 FGFVTMSTIEEAEKAVEMFHRYDVN 183
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 6/71 (8%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
GS+F +++VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFVTM+S E
Sbjct: 207 GSSF----RIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQE 262
Query: 145 EVEAAAQQFNG 155
E++ A +G
Sbjct: 263 ELDDAIAALDG 273
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLFVGNL + V+S LA LFE AG VE+ VIY++ T +SRGFGFVTMSSV+E E
Sbjct: 133 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 192
Query: 149 AAQQFNGY-------VSNKLSPK 164
A ++FN Y NK +P+
Sbjct: 193 AVEKFNRYDLNGRLLTVNKAAPR 215
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+
Sbjct: 226 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 285
Query: 148 AAAQQFNG 155
A +G
Sbjct: 286 EAISALDG 293
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLFVGNL + V+S LA LFE AG VE+ VIY++ T +SRGFGFVTMSSV+E E
Sbjct: 122 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 181
Query: 149 AAQQFNGY-------VSNKLSPK 164
A ++FN Y NK +P+
Sbjct: 182 AVEKFNRYDLNGRLLTVNKAAPR 204
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+
Sbjct: 215 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 274
Query: 148 AAAQQFNG 155
A +G
Sbjct: 275 EAISALDG 282
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 3/70 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ +DS LA LF+ AG VE+ VIY++ TG+SRGFGFVTMS++EE + A +
Sbjct: 115 KVYVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 174
Query: 153 FNGY-VSNKL 161
FN Y +S +L
Sbjct: 175 FNRYDISGRL 184
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+P + +VGNLP+ VD ++L LF G V V+YD+ +GRSRGFGFVTM S EE+
Sbjct: 203 QFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEEL 262
Query: 147 EAAAQQFNG 155
+ A +G
Sbjct: 263 DDAISALDG 271
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 3/70 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ VDS LA +F+ AG VE+ VIY++ TG+SRGFGFVTMS+VEE + A +
Sbjct: 109 KVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEM 168
Query: 153 FNGY-VSNKL 161
FN Y +S +L
Sbjct: 169 FNRYDISGRL 178
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+P + +VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFV+M S EE+
Sbjct: 197 QFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEEL 256
Query: 147 EAAAQQFNG 155
A +G
Sbjct: 257 NDAISALDG 265
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K++VGNLP+ VDS +LA LFE AG VE+ VIY++ T +SRGFGFVTMS++EE E A
Sbjct: 114 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 173
Query: 151 QQFNGYVSN 159
+ F+ Y N
Sbjct: 174 EMFHRYDVN 182
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
GS+F +++VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFVTM+S
Sbjct: 206 GSSF----RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQP 261
Query: 145 EVEAAAQQFNG 155
E++ A +G
Sbjct: 262 ELDDAIAALDG 272
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLFVGNL + V+S LA LFE AG VE+ VIY++ T +SRGFGFVTMSSV+E E
Sbjct: 128 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 187
Query: 149 AAQQFNGY-------VSNKLSPK 164
A ++FN Y NK +P+
Sbjct: 188 AVEKFNRYDLNGRLLTVNKAAPR 210
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+
Sbjct: 221 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 280
Query: 148 AAAQQFNG 155
A +G
Sbjct: 281 EAISALDG 288
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+++GNLPFS DSA+LAG+ + G+VEMV IYD+ TGRSRGF F TMSSVE+ A +
Sbjct: 112 KVYLGNLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFATMSSVEDANALVEN 171
Query: 153 FNG 155
+G
Sbjct: 172 LDG 174
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
++++GNL + V+ L +F GN+ +++D+ TGRSRGFGF+T S+ E EAA
Sbjct: 217 RVYIGNLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVAS 276
Query: 153 FNG 155
NG
Sbjct: 277 LNG 279
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 55/79 (69%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ +DS +LA LFE AG VE+ VIY++ T +SRGFGFVTMS++EE E A +
Sbjct: 118 KVYVGNLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 177
Query: 153 FNGY-------VSNKLSPK 164
F+ Y NK +P+
Sbjct: 178 FHRYDVGGRLLTVNKAAPR 196
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 6/71 (8%)
Query: 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVE 144
GS+F +++VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFVTM+S E
Sbjct: 209 GSSF----RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQE 264
Query: 145 EVEAAAQQFNG 155
E++ A +G
Sbjct: 265 ELDDAIAALDG 275
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ VDS +LA LF+ AG VE+ VIY++ +G+SRGFGFVTMS++EE + A +
Sbjct: 4 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 63
Query: 153 FNGY-VSNKL 161
FN Y +S +L
Sbjct: 64 FNRYDISGRL 73
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+ + +VGNLP+ + ++L LF G V V+YD+ TGRSRGFGFVTM+S E++
Sbjct: 92 QFASSFRAYVGNLPWQAEDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKEDL 151
Query: 147 EAAAQQFNG 155
++A +G
Sbjct: 152 DSAISALDG 160
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 9/81 (11%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K+FVGNLP+ VDS +LA LFE AG VE+ VIY++ T SRGFGFVTMS+VEE E A
Sbjct: 148 EAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAV 207
Query: 151 QQFNGY-------VSNKLSPK 164
+ + Y NK +P+
Sbjct: 208 EMLHRYDLDGRFLTVNKAAPR 228
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P +++VGNLP+ VDS +L +F G V V++D+ T RSRGFGFVTMS+ E+ A
Sbjct: 241 PGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDA 300
Query: 150 AQQFNG 155
+G
Sbjct: 301 IAALDG 306
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
Query: 77 QEEDLLSDE---DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGR 131
+EE+L S E + + KL+ GNLP++VDSAQLAG+ + G EMV +Y + TGR
Sbjct: 87 EEEELASGETEGEADQVPVNTKLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGR 146
Query: 132 SRGFGFVTMSSVEEVEAAAQQFNG 155
SRGF FVTMSS+E+ E + +G
Sbjct: 147 SRGFAFVTMSSIEDCETVIENLDG 170
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KLF+GNL +SV S L F+ GNV V+YD TG+SRG+GFV S+ EE+E A
Sbjct: 197 EYKLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETAL 256
Query: 151 QQFNG 155
Q NG
Sbjct: 257 QSLNG 261
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ VDS +LA LFE AG VE+ VIY++ T RSRGFGFVTMS+VEE + A +
Sbjct: 117 KVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRETDRSRGFGFVTMSTVEEADKAVEM 176
Query: 153 FNGY-------VSNKLSPK 164
+ Y NK +P+
Sbjct: 177 LHRYDVNGRLLTVNKAAPR 195
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P L+++VGNLP+ VD ++L +F G V V+YD+ TGRSRGFGFVTM++ +E++ A
Sbjct: 208 PSLRIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDA 267
Query: 150 AQQFNG 155
+G
Sbjct: 268 IAALDG 273
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ VDS LA LFE AG VE+ VIY++ TG+SRGFGFVTMS++EE + A +
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 153 FNGYVSN 159
N Y N
Sbjct: 188 LNRYDIN 194
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+P + +VGNLP+ VD ++L LF G V V+YD+ +GRSRGFGFV+M+S EE+
Sbjct: 216 QFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEEL 275
Query: 147 EAAAQQFNG 155
+ A +G
Sbjct: 276 DDAISALDG 284
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ VDS LA LFE AG VE+ VIY++ TG+SRGFGFVTMS++EE + A +
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 153 FNGYVSN 159
N Y N
Sbjct: 189 LNRYDIN 195
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+P + +VGNLP+ VD ++L LF G V V+YD+ +GRSRGFGFV+M+S EE+
Sbjct: 217 QFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEEL 276
Query: 147 EAAAQQFNG 155
+ A +G
Sbjct: 277 DDAISALDG 285
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 3/70 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ ++S LA LF+ AG VE+ VIY+K TG+SRGFGFVTMS++EE + A +
Sbjct: 112 KVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMSTIEEADKAIEM 171
Query: 153 FNGY-VSNKL 161
FN Y +S +L
Sbjct: 172 FNRYDISGRL 181
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+P + +VGNLP+ D ++L LF G V V+YD+ TGRSRGFGFVTM S EE+
Sbjct: 200 QFAPAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEEL 259
Query: 147 EAAAQQFNG 155
+ A +G
Sbjct: 260 DDAISALDG 268
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K++VGNLP+ ++S LA LF+ AG VE+ VIY+K TG+SRGFGFVTMS++EE + A
Sbjct: 110 EAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMSTIEEADKAI 169
Query: 151 QQFNGY-VSNKL 161
+ FN Y +S +L
Sbjct: 170 EMFNRYDISGRL 181
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+P + +VGNLP+ D ++L LF G V V+YD+ TGRSRGFGFVTM S EE+
Sbjct: 200 QFAPAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEEL 259
Query: 147 EAAAQQFNG 155
+ A +G
Sbjct: 260 DDAISALDG 268
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 55/79 (69%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ VDS +LA LF+ AG VE+ VIY++ T +SRGFGFVTMS+VEE E A +
Sbjct: 126 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 185
Query: 153 FNGY-------VSNKLSPK 164
F+ Y NK +P+
Sbjct: 186 FHRYDVNGRLLTVNKAAPR 204
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P L+++VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFVTM+S +E++ A
Sbjct: 217 PSLRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDA 276
Query: 150 AQQFNG 155
+G
Sbjct: 277 IAALDG 282
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 85 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSS 142
E+G+ + KL+ GNLP+S DSAQLAG+ + G+ E+ V+Y++ TGRSRGF FVTMSS
Sbjct: 102 EEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSS 161
Query: 143 VEEVEAAAQQFNG 155
VE+ A + +G
Sbjct: 162 VEDCNAVIENLDG 174
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KLFVGNL +SV S L +F+ GNV V+YD TGRSRG+GFV S+ E++ A
Sbjct: 201 EYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTAL 260
Query: 151 QQFNG 155
+ NG
Sbjct: 261 ESLNG 265
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ VDS LA LFE AG VE+ VIY++ TG+SRGFGFVTMS++EE + A +
Sbjct: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
Query: 153 FNGYVSN 159
N Y N
Sbjct: 77 LNRYDIN 83
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F+P + +VGNLP+ VD ++L LF G V V+YD+ +GRSRGFGFV+M+S EE++
Sbjct: 106 FAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELD 165
Query: 148 AAAQQFNG 155
A +G
Sbjct: 166 DAISALDG 173
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 7/84 (8%)
Query: 74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGR 131
E + E+++++ED KL+ GNLP+SVDSA+LAGL E G+ E+ V+YD+ TG+
Sbjct: 102 EKENGEEIVAEED-----TRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGK 156
Query: 132 SRGFGFVTMSSVEEVEAAAQQFNG 155
SRGF F TM+ VE+ +A + +G
Sbjct: 157 SRGFAFATMTCVEDCKAVIENLDG 180
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KLF+GNL + V S L F+ G V VIYD TG SRG+GFV+ ++ E+EAA
Sbjct: 207 EYKLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAAL 266
Query: 151 QQFN 154
N
Sbjct: 267 TIMN 270
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP+SVDSA LAGL E G+ E+ V+YD+ TG+SRGF FVTMS VE+ A Q
Sbjct: 216 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 275
Query: 153 FNG 155
+G
Sbjct: 276 LDG 278
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+ KLFVGNL ++V S L F+ G V V++D TG+SRG+GFV+ ++ E++ A
Sbjct: 305 EYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTA 363
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K++VGNLP+ VDS LA +F+ AG VE+ VIY++ TG+SRGFGFVTMS+VEE + A
Sbjct: 107 EAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAI 166
Query: 151 QQFNGY-VSNKL 161
+ F+ Y +S +L
Sbjct: 167 EMFSRYDISGRL 178
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+P + +VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFV+M S EE+
Sbjct: 197 QFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEEL 256
Query: 147 EAAAQQFNGYVS 158
A +G V+
Sbjct: 257 NDAISALDGQVN 268
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K++VGNLP+ VDS LA +F+ AG VE+ VIY++ TG+SRGFGFVTMS+VEE + A
Sbjct: 107 EAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAI 166
Query: 151 QQFNGY-VSNKL 161
+ F+ Y +S +L
Sbjct: 167 EMFSRYDISGRL 178
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+P + +VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFV+M S EE+
Sbjct: 197 QFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEEL 256
Query: 147 EAAAQQFNG 155
A +G
Sbjct: 257 NDAISALDG 265
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP+SVDSA LAGL E G+ E+ V+YD+ TG+SRGF FVTMS VE+ A Q
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 153 FNG 155
+G
Sbjct: 174 LDG 176
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+ KLFVGNL ++V S L F+ G V V++D TG+SRG+GFV+ ++ E++ A
Sbjct: 203 EYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTA 261
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 55/79 (69%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+ V+S LA LF+ AG VE+ +IY++ T +SRGFGFVTMS+V+E E A ++
Sbjct: 99 KLYVGNLPYDVNSENLAQLFDQAGTVEVAEIIYNRETDQSRGFGFVTMSTVDEAEKAIEK 158
Query: 153 FNGY-------VSNKLSPK 164
F+ Y NK +P+
Sbjct: 159 FHRYDLNGRFLTVNKAAPR 177
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F +++VGNLP+ VD A+L +F G V V+ D+ TGRSRGFGFVTMSS E+
Sbjct: 187 FKIAYRIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSSETELN 246
Query: 148 AAAQQFNG 155
A +G
Sbjct: 247 DAIAALDG 254
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 85 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSS 142
E+G+ + KL+ GNLP+S DSAQLAG+ + G+ E+ V+Y++ TGRSRGF FVTMSS
Sbjct: 102 EEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSS 161
Query: 143 VEEVEAAAQQFNG 155
VE+ A + +G
Sbjct: 162 VEDCNAVIENLDG 174
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KLFVGNL +SV S L +F+ GNV V+YD TGRSRG+GFV S+ E++ A
Sbjct: 201 EYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTAL 260
Query: 151 QQFNG 155
+ NG
Sbjct: 261 ESLNG 265
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+S+ S++LA +FE AG V VI D+VT RSRGFGFVTM SVEE + A +
Sbjct: 117 KLYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRM 176
Query: 153 FNG 155
FNG
Sbjct: 177 FNG 179
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L F + VIY++ TGRSRGFGFV+ S E EAA +
Sbjct: 220 KIYAGNLGWRLTSEGLGDAFANQPGLLSAKVIYERDTGRSRGFGFVSFDSAENAEAALEA 279
Query: 153 FNG 155
NG
Sbjct: 280 MNG 282
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 48/62 (77%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLP+++ S++L+ LF AGNV ++YDKVT RSRGFGFVTM ++EE + A Q
Sbjct: 118 RLYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTDRSRGFGFVTMGTIEEAKEAIQM 177
Query: 153 FN 154
FN
Sbjct: 178 FN 179
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL +++ S L F V VIY++ TGRSRGFGF++ S E+V++A
Sbjct: 221 KIYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSALAT 280
Query: 153 FNG 155
NG
Sbjct: 281 MNG 283
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP+SVDSA LAGL E G+ E+ V+YD+ TG+SRGF FVTMS VE+ A Q
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 153 FNG 155
+G
Sbjct: 174 LDG 176
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+ KLFVGNL ++V F+ G V V++D TG+ RG+GFV+ ++ E++ A
Sbjct: 203 EYKLFVGNLAWTVTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSEMDTA 261
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 62/94 (65%), Gaps = 11/94 (11%)
Query: 82 LSDEDGSNFSP--DLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGF 137
+DE+ S +P ++K+FVGNLPF ++SA LA LF AG VE VIY++ T +SRGFGF
Sbjct: 122 FADEEDSYSAPPEEVKIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRETDQSRGFGF 181
Query: 138 VTMSSVEEVEAAAQQFNGY-------VSNKLSPK 164
V+MS+VEEV A + F+ Y NK +P+
Sbjct: 182 VSMSTVEEVVKAIEMFDRYDINGRTLTVNKAAPR 215
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEV 146
+F P +++VGN+P+ VD+ +L LF G VE +++D+ TGRSRGFGFVTMSS E+
Sbjct: 225 DFEPAFRVYVGNIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQIEM 284
Query: 147 EAAAQQFNG 155
E A +G
Sbjct: 285 EDAIAALDG 293
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++VDSAQLAG+ + G E+V +YD+ TGRSRGF FVTMS+VE+ A +
Sbjct: 114 KLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIEN 173
Query: 153 FNG 155
+G
Sbjct: 174 LDG 176
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL +SV S L F+ GN+ V+YD TGRSRG+GFV ++ E+E A
Sbjct: 205 KLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVS 264
Query: 153 FNG 155
NG
Sbjct: 265 LNG 267
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 85 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSS 142
E+G+ + KL+ GNLP+S DSA LAG+ + G+ E+V +YD+ TGRSRGF FVTMSS
Sbjct: 57 EEGAESPVNTKLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSS 116
Query: 143 VEEVEAAAQQFNG 155
VE+ A + +G
Sbjct: 117 VEDCNAVIENLDG 129
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFVGNLPFS+ S+QLA LF AGNV V +YD +T RSRGF FVTM +VE+ E A +
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 153 FNG 155
F+G
Sbjct: 169 FDG 171
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L F + V+Y++ G+SRG+GFV+ + E+VE A
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 153 FNG 155
NG
Sbjct: 268 MNG 270
>gi|414883567|tpg|DAA59581.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 385
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFVGNLP++ S +LA +F AG V+ +IYDKVT RSRGF FVTM++ EE A Q
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 172
Query: 153 FNGYVS 158
F+G VS
Sbjct: 173 FDGAVS 178
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFE-TAGNVE-MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V + L +FE AG ++ VI+++ TGRSRGFGFV+ S+ E+ +AA +
Sbjct: 256 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 315
Query: 153 FNG 155
+G
Sbjct: 316 LDG 318
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ +L+VGNLP+++ S++L+ +F AG V ++YDKVT RSRGFGFVTM S+EE + A
Sbjct: 107 EWRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 166
Query: 151 QQFN 154
Q FN
Sbjct: 167 QMFN 170
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL +++ S L F V VIY++ TGRSRGFGF++ S E V++A
Sbjct: 212 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 271
Query: 153 FNG 155
NG
Sbjct: 272 MNG 274
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLP+++ S++L+ +F AG V ++YDKVT RSRGFGFVTM S+EE + A Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKGAMQM 176
Query: 153 FN 154
FN
Sbjct: 177 FN 178
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L F V VIY++ TGRSRGFGF++ S E V++A
Sbjct: 220 KVYAGNLGWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 153 FNG 155
NG
Sbjct: 280 MNG 282
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP+SVDSA+LAGL + G+ E+ V+YD+ TG+SRGF FVTMS +E+ A +
Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173
Query: 153 FNG 155
+G
Sbjct: 174 LDG 176
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL +SV + L F+ G V V+YD TGRSRG+GFV S+ EE+EAA
Sbjct: 205 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGA 264
Query: 153 FN 154
N
Sbjct: 265 LN 266
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 9/81 (11%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ K++VGNLP+ V S +LA LF+ AG VE+ VIY+ T SRGFGFVTMS+VEE + A
Sbjct: 115 EAKIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTVEESDKAI 174
Query: 151 QQFNGY-------VSNKLSPK 164
+ FN Y NK +P+
Sbjct: 175 EMFNRYNLDGRLLTVNKAAPR 195
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P +++VGNLP+ VDS +L +F G V V+ D TGRSRGFGFVTMSS E+ A
Sbjct: 208 PSYRIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDA 267
Query: 150 AQQFNG 155
+G
Sbjct: 268 IAALDG 273
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP+SVDSA+LAGL + G+ E+ V+YD+ TG+SRGF FVTMS +E+ A +
Sbjct: 118 KLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 177
Query: 153 FNG 155
+G
Sbjct: 178 LDG 180
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSS 142
KLFVGNL +SV + L F+ G V V+YD TGRSRG+GFV S+
Sbjct: 209 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYST 258
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLP+++ S++L+ +F AG V ++YDKVT RSRGFGFVTM S+EE + A Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 153 FN 154
FN
Sbjct: 177 FN 178
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL +++ S L F V VIY++ TGRSRGFGF++ S E V++A
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 153 FNG 155
NG
Sbjct: 280 MNG 282
>gi|255566169|ref|XP_002524072.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223536640|gb|EEF38282.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 190
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 49/63 (77%), Gaps = 4/63 (6%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+L+VGNLP+S+ S++L + + AG NVE +IYD+VT RSRGFGFVTM+SVEE + A +
Sbjct: 117 RLYVGNLPYSMTSSELTEVMQEAGSVANVE-IIYDRVTDRSRGFGFVTMASVEEAKEAIK 175
Query: 152 QFN 154
FN
Sbjct: 176 MFN 178
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++ DSAQLAG+ + EMV +YD+ TGRSRGF FVTMS++E+ E +
Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 207
Query: 153 FNG 155
+G
Sbjct: 208 LDG 210
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V S L +F+ GNV V+YD TGRSRG+GFV S+ EE++ A
Sbjct: 239 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 298
Query: 153 FNG 155
NG
Sbjct: 299 LNG 301
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++ DSAQLAG+ + EMV +YD+ TGRSRGF FVTMS++E+ E +
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205
Query: 153 FNG 155
+G
Sbjct: 206 LDG 208
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V S L +F+ GNV V+YD TGRSRG+GFV S+ EE++ A
Sbjct: 237 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 296
Query: 153 FNG 155
NG
Sbjct: 297 LNG 299
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNLPF++D+ QL LFE AG V +I D+ TG SRGFGFVTM +VEE E +
Sbjct: 114 KLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVEL 173
Query: 153 FNGY-------VSNKLSPK 164
FN + NK +P+
Sbjct: 174 FNRHSLEGRLLTVNKAAPR 192
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ D L LF G V V+YD+ TGRSRGFGFVT SS EV A
Sbjct: 208 KIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAA 267
Query: 153 FNG 155
+G
Sbjct: 268 LDG 270
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 9/79 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNLPF++D+ QL LFE AG V +I D+ TG SRGFGFVTM +VEE E +
Sbjct: 114 KLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVEL 173
Query: 153 FNGY-------VSNKLSPK 164
FN + NK +P+
Sbjct: 174 FNRHSLEGRLLTVNKAAPR 192
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+ D L LF G V V+YD+ TGRSRGFGFVT SS EV A
Sbjct: 208 KIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAA 267
Query: 153 FNG 155
+G
Sbjct: 268 LDG 270
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+L+VGNLPFS+ S+QL+ +F AG NVE ++YD+VT RSRGF FVTM SVEE + A +
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVE-IVYDRVTDRSRGFAFVTMGSVEEAKEAIR 168
Query: 152 QFNG 155
F+G
Sbjct: 169 LFDG 172
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLF-ETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+V NL +++ S L F + G + VIYD+ +GRSRGFGF+T SS E +++A
Sbjct: 213 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDT 272
Query: 153 FN 154
N
Sbjct: 273 MN 274
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP+SVDSA+LAGL + G+ E+ V+YD+ +G+SRGF FVTMS +E+ A +
Sbjct: 111 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMSCIEDCNAVIEN 170
Query: 153 FNG 155
+G
Sbjct: 171 LDG 173
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL +SV + L F+ G V V+YD TGRSRG+GFV S+ E+EAA
Sbjct: 202 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAA 261
Query: 153 FN 154
N
Sbjct: 262 LN 263
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+L+VGNLPFS+ S+QL+ +F AG NVE ++YD+VT RSRGF FVTM SVEE + A +
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVE-IVYDRVTDRSRGFAFVTMGSVEEAKEAIR 162
Query: 152 QFNG 155
F+G
Sbjct: 163 LFDG 166
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLF-ETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+V NL +++ S L F + G + VIYD+ +GRSRGFGF+T SS E +++A
Sbjct: 207 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDT 266
Query: 153 FN 154
N
Sbjct: 267 MN 268
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL++GNLP+ DSAQLAG+ + G+VE+V IYD+ +GRSRGF FVTM++ E+ E ++
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 153 FNGY 156
+G+
Sbjct: 61 LDGH 64
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVGNL + VD+ L LF G V V+YD+ +GRSRGFGFVT S V EV+AA
Sbjct: 108 KVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDS 167
Query: 153 FNG 155
+G
Sbjct: 168 LDG 170
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KL+ GNLP++VDSAQLAG+ + G+ EM V+Y + TGRSRGF FVTMSS+E+ A
Sbjct: 106 NTKLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSIEDCNAVI 165
Query: 151 QQFN 154
+ +
Sbjct: 166 ENLD 169
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KLFVGNL +S S L F+ GNV V+YD TG+SRG+GFV S+ E++ A
Sbjct: 197 EYKLFVGNLSWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTAL 256
Query: 151 QQFNG 155
+G
Sbjct: 257 VSLDG 261
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+L+VGNLPFS+ S+QL+ +F AG NVE ++YD+VT RSRGF FVTM SVEE + A +
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVE-IVYDRVTDRSRGFAFVTMGSVEEAKEAIR 173
Query: 152 QFNG 155
F+G
Sbjct: 174 LFDG 177
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLF-ETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+V NL +++ S L F + G + VIYD+ +GRSRGFGF+T SS E + +A
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277
Query: 153 FN 154
N
Sbjct: 278 MN 279
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++ DSAQLAG+ + + EMV +YD++TGRSRGF FVTM++V++ E +
Sbjct: 125 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRITGRSRGFAFVTMTTVQDCELVIKN 184
Query: 153 FNG 155
+G
Sbjct: 185 LDG 187
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V S L F GNV V+YD TGRSRG+GFV S+ EE++ A
Sbjct: 216 KLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISS 275
Query: 153 FNG 155
NG
Sbjct: 276 LNG 278
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFVGNLP++ S +LA +F AG V+ +IYDKVT RSRGF FVTM++ EE A Q
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 172
Query: 153 FNG 155
F+G
Sbjct: 173 FDG 175
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFE-TAGNVE-MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V + L +FE AG ++ VI+++ TGRSRGFGFV+ S+ E+ +AA +
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 271
Query: 153 FNG 155
+G
Sbjct: 272 LDG 274
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFVGNLP++ S +LA +F AG V+ +IYDKVT RSRGF FVTM++ EE A Q
Sbjct: 111 RLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 170
Query: 153 FNG 155
F+G
Sbjct: 171 FDG 173
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFE-TAGNVE-MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V + L +FE AG ++ VI+++ TGRSRGFGFV+ + E+ +AA +
Sbjct: 210 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEA 269
Query: 153 FNG 155
+G
Sbjct: 270 LDG 272
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFVGNLP++ S +LA +F AG V+ +IYDKVT RSRGF FVTM++ EE A Q
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 172
Query: 153 FNG 155
F+G
Sbjct: 173 FDG 175
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFE-TAGNVE-MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V + L +FE AG ++ VI+++ TGRSRGFGFV+ S+ E+ +AA +
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 271
Query: 153 FNG 155
+G
Sbjct: 272 LDG 274
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 49/63 (77%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL++GNLP+++ S+QL+ +F AG+V VIYDKVT RSRGF FVTM+++EE + A +
Sbjct: 116 KLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 175
Query: 153 FNG 155
F+G
Sbjct: 176 FDG 178
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L FE + +IYD+ +G+SRGFGFV+ + E+ E+A +
Sbjct: 219 KIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALES 278
Query: 153 FNG 155
NG
Sbjct: 279 MNG 281
>gi|297741610|emb|CBI32742.3| unnamed protein product [Vitis vinifera]
Length = 127
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/34 (94%), Positives = 34/34 (100%)
Query: 123 VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VIYDK+TGRSRGFGFVTMS+VEEVEAAAQQFNGY
Sbjct: 4 VIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGY 37
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 110 LAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
L LF G V VIYD+ TGRSRGFGFVT +S EEV A + +G
Sbjct: 59 LETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDG 106
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 10/79 (12%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGN+P+ DS +LA LF+ AG VE+ VIY++ T +SRGFGFVTMS+VEE E A +
Sbjct: 31 KLFVGNIPYD-DSEKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAVEM 89
Query: 153 FNGY-------VSNKLSPK 164
+ Y NK +P+
Sbjct: 90 LHRYDINGRNLTVNKAAPR 108
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P L+++VGNLP+ VD ++L LF G V V+YD+ +GRSRGFGFVT+++ EEV+ A
Sbjct: 120 PSLRVYVGNLPWQVDDSRLEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDA 179
Query: 150 AQQFNG 155
+G
Sbjct: 180 IAALDG 185
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++ DSAQLAG+ + + EMV +YD+ TGRSRGF FVTM++V++ E +
Sbjct: 117 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELVIKN 176
Query: 153 FNG 155
+G
Sbjct: 177 LDG 179
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V S L F G V V+YD TGRSRG+GFV S+ EE++ A
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 153 FNG 155
NG
Sbjct: 268 LNG 270
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++ DSAQLAG+ + + EMV +YD+ TGRSRGF FVTM++V++ E +
Sbjct: 117 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELVIKN 176
Query: 153 FNG 155
+G
Sbjct: 177 LDG 179
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V S L F G V V+YD TGRSRG+GFV S+ EE++ A
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 153 FNG 155
NG
Sbjct: 268 LNG 270
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNLP++ +A+L +F AG+V+ +IYDK+T RSRGF FVTM++ EE A Q
Sbjct: 122 RIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQM 181
Query: 153 FNG 155
FNG
Sbjct: 182 FNG 184
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V + L FE + VI+++ TGRSRGFGFV+ ++E+ AA Q
Sbjct: 226 KVYAGNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQA 285
Query: 153 FNG 155
+G
Sbjct: 286 MDG 288
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNLP++ +A+L F AG+V+ +IYDK+T RSRGF FVTM++ EE A Q
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQM 168
Query: 153 FNG 155
FNG
Sbjct: 169 FNG 171
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V + L FE + VI+++ TGRSRGFGFV+ ++++ +AA Q
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 153 FNG 155
+G
Sbjct: 273 MDG 275
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNLP++ +A+L F AG+V+ +IYDK+T RSRGF FVTM++ EE A Q
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQM 168
Query: 153 FNG 155
FNG
Sbjct: 169 FNG 171
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V + L FE + VI+++ TGRSRGFGFV+ ++++ +AA Q
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 153 FNG 155
+G
Sbjct: 273 MDG 275
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLP+S+ S+QL +F AG+V V +YD+VT RSRGF FVTM SV+E + A +
Sbjct: 104 RLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRM 163
Query: 153 FNG 155
F+G
Sbjct: 164 FDG 166
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L F + VIY++ +GRSRGFGF++ +S E E+A
Sbjct: 207 KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 266
Query: 153 FN 154
N
Sbjct: 267 MN 268
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 56 QPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
P P S R R + ++ +E + + G + +L+VGN+P + + +LA +F
Sbjct: 38 HPCPVSALRRKRVFSTKAQVQVQEAV---QGGKQKEIERRLYVGNIPRTSTNEELAKIFG 94
Query: 116 TAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
GNVE V+YDK T RSR F FVTMS+VE+ +AA ++ NG
Sbjct: 95 ECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQAAIEKMNG 136
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKV--TGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +V + L F GNV ++ TG+S G+GFV+ SS +VEAA
Sbjct: 173 KVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISA 232
Query: 153 FNGYV 157
FN V
Sbjct: 233 FNNVV 237
>gi|406959178|gb|EKD86596.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+FVG+LP++VD A+LA LF AGNV V+ D+ TGRSRGFGFV MS+ EE + A +
Sbjct: 1 MFVGSLPWAVDDAKLAELFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 154 NG 155
NG
Sbjct: 61 NG 62
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLP+S+ S+QL +F AG+V V +YD+VT RSRGF FVTM SV+E + A +
Sbjct: 247 RLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRM 306
Query: 153 FNG 155
F+G
Sbjct: 307 FDG 309
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L F + VIY++ +GRSRGFGF++ +S E E+A
Sbjct: 350 KIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 409
Query: 153 FN 154
B
Sbjct: 410 MB 411
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+
Sbjct: 73 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 132
Query: 148 AAAQQFNG 155
A +G
Sbjct: 133 EAISALDG 140
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 9/61 (14%)
Query: 113 LFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY-------VSNKLSP 163
LFE AG VE+ VIY++ T +SRGFGFVTMSSV+E E A ++FN Y NK +P
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 61
Query: 164 K 164
+
Sbjct: 62 R 62
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGN+P ++DSA+LA + E G VE V+YDK +GRSR F FVTM +VE+ AA ++
Sbjct: 71 RLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 130
Query: 153 FNG 155
NG
Sbjct: 131 LNG 133
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLF-ETAGNVEMVIYDKVTGRSR--GFGF 137
LL E+ K++VGNL +V + L F E G V +V G S+ GFGF
Sbjct: 157 LLQAEESQFIDSPHKVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGF 216
Query: 138 VTMSSVEEVEAAAQQFN 154
V+ SS E+VEAA N
Sbjct: 217 VSFSSEEDVEAAISSCN 233
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++ DSA LAG+ + EMV +YD+ TGRSRGF FVTMS++E+ E +
Sbjct: 134 KLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 193
Query: 153 FNG 155
+G
Sbjct: 194 LDG 196
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V L F+ G+V V+YD TGRSRG+GFV S+ EE++ A +
Sbjct: 225 KLFVGNLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 284
Query: 153 FNG 155
NG
Sbjct: 285 LNG 287
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP++ DSAQLA + G V++V IYDK++GRSRGF FVTM++ E+ +A
Sbjct: 45 KLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIYDKISGRSRGFAFVTMATPEDAQAVINA 104
Query: 153 FNG 155
+G
Sbjct: 105 LDG 107
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL + D A L F G V V++D+ +GRSRGFGFVTM S AA +
Sbjct: 141 KLFVGNLSWGCDEAALYSFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANAAIEN 200
Query: 153 FNG 155
+G
Sbjct: 201 LDG 203
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++ DSA LAG+ + EMV +YD+ TGRSRGF FVTMS++E+ E +
Sbjct: 251 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 310
Query: 153 FNG 155
+G
Sbjct: 311 LDG 313
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V L F+ GNV V+YD TGRSRG+GFV S+ EE++ A +
Sbjct: 342 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 401
Query: 153 FNG 155
NG
Sbjct: 402 LNG 404
>gi|4678944|emb|CAB41335.1| putative protein [Arabidopsis thaliana]
Length = 546
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
++++GN+P +V + QL L E G VE V+YDK +GRSR FGF TM SVE+ A ++ N
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVMYDKYSGRSRRFGFATMKSVEDANAVVEKLN 136
Query: 155 G 155
G
Sbjct: 137 G 137
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFV 138
+L ED + K++VGNL +V L LF G V +V G +S GFGFV
Sbjct: 169 VLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFV 228
Query: 139 TMSSVEEVEAAAQQFN 154
T SS E+VEAA N
Sbjct: 229 TFSSEEDVEAAIVALN 244
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP+SVDS+QLA + + G E+ V+YD+ TG+SRGF FVTMSS+E+ +
Sbjct: 103 KLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIEN 162
Query: 153 FNG 155
+G
Sbjct: 163 LDG 165
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KLFVGNL +SV S L F+ GNV VIYD TG+SRG+GFV+ S+ E+E A
Sbjct: 192 EYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETAL 251
Query: 151 QQFN 154
+ N
Sbjct: 252 ETIN 255
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLP+S+ +++L LF AG V V +YD+VT RSRGF FVTM SVE+ + A +
Sbjct: 109 RLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRM 168
Query: 153 FNG 155
F+G
Sbjct: 169 FDG 171
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L F V VIY++ +GRSRGFGFV+ + E AA
Sbjct: 212 KIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDI 271
Query: 153 FNG 155
NG
Sbjct: 272 MNG 274
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFVGNLP+S+ S+QLA F AGNV V +YD + RSRGF FVTM S+E+ E A +
Sbjct: 89 RLFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIRM 148
Query: 153 FNG 155
F+G
Sbjct: 149 FDG 151
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 87 GSNF-----SPDLKLFVGNLPFSVDSAQLAGLF-ETAGNVEM-VIYDKVTGRSRGFGFVT 139
GSN+ SP K++ GNL + + S L F E G + VIY++ +GRSRG+GFV+
Sbjct: 176 GSNYRGFVDSPH-KIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVS 234
Query: 140 MSSVEEVEAAAQQFNG 155
+ E+VEAA NG
Sbjct: 235 FETAEDVEAALNSMNG 250
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++ DSA LAG+ + EMV +YD+ TGRSRGF FVTMS++E+ E +
Sbjct: 135 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 194
Query: 153 FNG 155
+G
Sbjct: 195 LDG 197
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V L F+ GNV V+YD TGRSRG+GFV S+ EE++ A +
Sbjct: 226 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 285
Query: 153 FNG 155
NG
Sbjct: 286 LNG 288
>gi|357128483|ref|XP_003565902.1| PREDICTED: uncharacterized protein LOC100828680 [Brachypodium
distachyon]
Length = 357
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 72 SSEFDQEEDLLSDEDGSNFSP--DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDK 127
E D+E + ED + P + L+VGNL +D LA LFE G VE ++YD+
Sbjct: 186 QQECDEE---YTSEDEEYYGPAAEGTLYVGNLRHHIDDEYLAQLFENVGIVEFSEILYDR 242
Query: 128 VTGRSRGFGFVTMSSVEEVEAAAQQFN 154
TG+SRG+G+VTMS+VEE E A F+
Sbjct: 243 ETGQSRGYGYVTMSTVEEAEMAVNTFH 269
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTG--RSRGFGFVTMSSVEEVEAA 149
+++FVGNLP VD + L LF G V V Y V G RSR FGFVTM++ EE + A
Sbjct: 292 VRIFVGNLPCEVDGSMLNLLFSEHGQVVDTKVAYGYVKGVWRSRRFGFVTMATREESDDA 351
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGN+P +V + +L +F G VE V+YDK T RSR FGFVTMS+VEE AA +
Sbjct: 68 KLYVGNVPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTVEEANAAVEA 127
Query: 153 FNG 155
NG
Sbjct: 128 LNG 130
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +V + L F G + + G +S+G+GFVT SS EEVEAA
Sbjct: 167 KVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 226
Query: 153 FN 154
FN
Sbjct: 227 FN 228
>gi|406873754|gb|EKD23843.1| hypothetical protein ACD_81C00167G0002 [uncultured bacterium]
Length = 111
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VG LP+S L LF AG VE M+I DK+TGRS+GFGFV M+S +E E A
Sbjct: 4 KLYVGGLPYSTTQDALNDLFSQAGTVESAMIIIDKMTGRSKGFGFVEMASDDEAEKAIDM 63
Query: 153 FNG 155
FNG
Sbjct: 64 FNG 66
>gi|406956570|gb|EKD84644.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+FVG+LP++VD A+L +F AGNV V+ D+ TGRSRGFGFV MS+ EE + A +
Sbjct: 1 MFVGSLPWAVDDAKLGEIFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 154 NG 155
NG
Sbjct: 61 NG 62
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLP+S+ ++ LA LF AG V V +YD+VT RSRGF FVTM +VE+ + A +
Sbjct: 106 RLYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRM 165
Query: 153 FNG 155
F+G
Sbjct: 166 FDG 168
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L F V VIY++ +GRSRGFGFV+ + E +AA
Sbjct: 209 KIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDI 268
Query: 153 FNG 155
NG
Sbjct: 269 MNG 271
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP++ DSAQLA + G V++V IYDK++GRSRGF FVTM+S ++ +A
Sbjct: 24 KVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSGRSRGFAFVTMASHDDAQALINA 83
Query: 153 FNG 155
+G
Sbjct: 84 LDG 86
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGN+P+ D A + LF G+V ++YD+ +GRSRGFGFVTM V + + A +
Sbjct: 128 KLFVGNIPWGCDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTMEKVGDAQTAMEN 187
Query: 153 FNG 155
+G
Sbjct: 188 LDG 190
>gi|413921822|gb|AFW61754.1| hypothetical protein ZEAMMB73_478558 [Zea mays]
Length = 131
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
F+P + +VGNLP+ VD ++L LF G V V+YD+ TGRSRGFGFV+M S EE+
Sbjct: 42 QFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEEL 101
Query: 147 EAAAQQFNG 155
A +G
Sbjct: 102 NDAISALDG 110
>gi|407005316|gb|EKE21467.1| RNA-binding protein, partial [uncultured bacterium]
Length = 76
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+++ A L LF AG VE ++I DK TGRS+GFGFV MS+ EE A +
Sbjct: 4 KLYVGNLPYTLKDADLNQLFAQAGAVESAVIINDKATGRSKGFGFVEMSADEEATKAIEM 63
Query: 153 FNG 155
F+G
Sbjct: 64 FDG 66
>gi|42407940|dbj|BAD09079.1| nucleic acid-binding protein-like [Oryza sativa Japonica Group]
Length = 131
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F+P + +VGNLP+ VD ++L LF G V V+YD+ +GRSRGFGFV+M+S EE++
Sbjct: 43 FAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELD 102
Query: 148 AAAQQFNG 155
A +G
Sbjct: 103 DAISALDG 110
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 49/66 (74%), Gaps = 3/66 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+++VGNL ++ DS +LA + + AG +VE V+ D+ TGRSRGFG+VT++S++ + A Q
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 152 QFNGYV 157
+ +G++
Sbjct: 62 KLDGHI 67
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+F+GNLP+ VD L F G V V +YD+ TGRSRGFGFVT+SS +E + A +
Sbjct: 98 KVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKS 157
Query: 153 FNG 155
+G
Sbjct: 158 LDG 160
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 54 SFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDL-KLFVGNLPFSVDSAQLAG 112
+ +P ++PS V V++ ++ ++S E + SP L KL+VGN+P +V + +L
Sbjct: 23 TLKPKTTTPSSLV----VTTRRFRKHFVVSSEQATVDSPALRKLYVGNIPRTVSNDELEK 78
Query: 113 LFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
+ + G VE V+YDK + RSR F FVTM +VE+ AAA++ NG
Sbjct: 79 IVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNG 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSR--GFGFVTMSSVEEVEAAAQQ 152
K++VGNL +V S L F GN + G S+ GFGFVT SS E+VEAA
Sbjct: 160 KVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISS 219
Query: 153 FN 154
FN
Sbjct: 220 FN 221
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 49/66 (74%), Gaps = 3/66 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+++VGNL ++ DS +LA + + AG +VE V+ D+ TGRSRGFG+VT++S++ + A Q
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 152 QFNGYV 157
+ +G++
Sbjct: 62 KLDGHI 67
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+F+GNLP+ VD L F G V ++YD+ TGRSRGFGFVT+SS +E + A +
Sbjct: 98 KVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKS 157
Query: 153 FNG 155
+G
Sbjct: 158 LDG 160
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 54 SFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDL-KLFVGNLPFSVDSAQLAG 112
+ +P ++PS V V++ ++ ++S E + SP L KL+VGN+P +V + +L
Sbjct: 23 TLKPKTTTPSSLV----VTTRRFRKHFVVSSEQATVDSPALRKLYVGNIPRTVSNDELEK 78
Query: 113 LFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
+ + G VE V+YDK + RSR F FVTM +VE+ AAA++ NG
Sbjct: 79 IVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNG 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSR--GFGFVTMSSVEEVEAAAQQ 152
K++VGNL +V S L F GN + G S+ GFGFVT SS E+VEAA
Sbjct: 160 KVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISS 219
Query: 153 FN 154
FN
Sbjct: 220 FN 221
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP S DSAQL LF+ G VE V+ ++ TG SRGF FVTMS+V E +AA ++
Sbjct: 103 KLYVGNLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTVIEAKAAIEK 162
Query: 153 FNG 155
G
Sbjct: 163 LQG 165
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LF GNL +SV + L LF G V V+Y+ G R FGFV +SS E+EAA
Sbjct: 198 QLFAGNLAWSVKNEILRDLFSEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVS 257
Query: 153 FNG 155
NG
Sbjct: 258 LNG 260
>gi|302036839|ref|YP_003797161.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|190343253|gb|ACE75641.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|300604903|emb|CBK41236.1| RNA-binding protein [Candidatus Nitrospira defluvii]
Length = 107
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VG LP++ +QL+ LF G VE VI DK TG+SRGFGFV MS+ EE +AA
Sbjct: 4 KLYVGGLPYAATESQLSNLFSAHGTVESARVITDKFTGQSRGFGFVEMSTAEEAKAAITA 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|126663185|ref|ZP_01734183.1| RNA binding protein [Flavobacteria bacterium BAL38]
gi|126624843|gb|EAZ95533.1| RNA binding protein [Flavobacteria bacterium BAL38]
Length = 111
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LPFSV+ A L G FE G VE +I DK TGRS+GFGFV M++ E + A
Sbjct: 1 MNIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKGFGFVEMANDAEAQKAID 60
Query: 152 QFNG-------YVSNKLSPK 164
+ NG V NK PK
Sbjct: 61 ELNGGTIEGRKIVVNKSEPK 80
>gi|406993247|gb|EKE12437.1| Glycine-rich RNA-binding protein GRP1A [uncultured bacterium]
Length = 86
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL + V L LF AG+V VI D++TGRSRGFGFVTM S E + A ++
Sbjct: 4 KLFVGNLAWEVTVEDLKALFAGAGSVVDAAVITDRMTGRSRGFGFVTMGSDAEAQTAVEK 63
Query: 153 FNGY 156
FN Y
Sbjct: 64 FNQY 67
>gi|86608306|ref|YP_477068.1| RNA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556848|gb|ABD01805.1| putative RNA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 175
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP VD L LF +AG V VI D+ TG+ RGFGFVT+++ E+ + +
Sbjct: 3 VRLYVGNLPEEVDRQALEKLFRSAGEVISTKVIRDRKTGKCRGFGFVTVNTEEQAQQYIE 62
Query: 152 QFNGY 156
+FNG+
Sbjct: 63 KFNGH 67
>gi|110739563|dbj|BAF01690.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
Length = 84
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+ A
Sbjct: 1 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 60
Query: 154 NG 155
+G
Sbjct: 61 DG 62
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGN+P +V + +LA +F G VE V++DK TGRSR FGFVTMS+ EE AA +
Sbjct: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
Query: 153 FN 154
N
Sbjct: 131 LN 132
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKV--TGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL SV + L F G V ++ T +S+G+GFVT SS EEV+AA
Sbjct: 170 KVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVST 229
Query: 153 FN 154
FN
Sbjct: 230 FN 231
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
++++GN+P +V + QL L E G VE V+YDK +GRSR FGF TM SVE+ A ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 153 FNG 155
NG
Sbjct: 137 LNG 139
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFV 138
LL ED + K++VGNL +V L LF G V +V G +S GFGFV
Sbjct: 165 LLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFV 224
Query: 139 TMSSVEEVEAAAQQFN 154
T SS E+VEAA N
Sbjct: 225 TFSSEEDVEAAILALN 240
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGN+P +V + +LA +F G VE V++DK TGRSR FGFVTMS+ EE AA +
Sbjct: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
Query: 153 FN 154
N
Sbjct: 131 LN 132
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 129 TGRSRGFGFVTMSSVEEVEAAAQQFN 154
T +S+G+GFVT SS EEVEAA FN
Sbjct: 187 TAKSKGYGFVTFSSEEEVEAAVSTFN 212
>gi|86607423|ref|YP_476186.1| RNA-binding protein [Synechococcus sp. JA-3-3Ab]
gi|86555965|gb|ABD00923.1| putative RNA-binding protein [Synechococcus sp. JA-3-3Ab]
Length = 181
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP VD L LF +AG V VI D+ TG+ RGFGFVT+S+ E+ + +
Sbjct: 3 VRLYVGNLPEEVDRQALEKLFSSAGEVISTKVIRDRRTGKCRGFGFVTVSTEEQAQQYIE 62
Query: 152 QFNGY 156
+FNG+
Sbjct: 63 KFNGH 67
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGN+P +V + +L+ +F G V V+YDK +GRSR FGFVTMS+ EEV AA +
Sbjct: 70 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 129
Query: 153 FN 154
N
Sbjct: 130 LN 131
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL V + L F G V ++ G +S+G+GFVT SS EEVEAA
Sbjct: 169 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVST 228
Query: 153 FN 154
FN
Sbjct: 229 FN 230
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
++++GN+P +V + QL L E G VE V+YDK +GRSR FGF TM SVE+ A ++
Sbjct: 77 RVYIGNIPRTVSNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 153 FNG 155
NG
Sbjct: 137 LNG 139
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFV 138
+L ED + K++VGNL +V L LF G V +V G +S GFGFV
Sbjct: 164 VLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFV 223
Query: 139 TMSSVEEVEAAAQQFN 154
T SS E+VEAA N
Sbjct: 224 TFSSEEDVEAAVVALN 239
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
++++GN+P +V + QL L E G VE V+YDK +GRSR FGF TM SVE+ A ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 153 FNG 155
NG
Sbjct: 137 LNG 139
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFV 138
+L ED + K++VGNL +V L LF G V +V G +S GFGFV
Sbjct: 164 VLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFV 223
Query: 139 TMSSVEEVEAAAQQFN 154
T SS E+VEAA N
Sbjct: 224 TFSSEEDVEAAIVALN 239
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGN+P +V + +L +F G V V+YDK +GRSR FGFVTMSSVEE AA +
Sbjct: 70 KLYVGNIPRTVTNDELRAMFADHGTVLRADVMYDKYSGRSRRFGFVTMSSVEEANAAIES 129
Query: 153 FN 154
N
Sbjct: 130 LN 131
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +V + L F G V ++ G +S+G+GFVT SS EEVEAA
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVST 228
Query: 153 FN 154
FN
Sbjct: 229 FN 230
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP S D AQL LF+ G VE V+ ++ TG SRGF FVTMS+V+E ++A ++
Sbjct: 95 KLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEK 154
Query: 153 FNG 155
G
Sbjct: 155 LQG 157
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 84 DEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMS 141
+ D S +LFVGNL +SV L LF GNV VIY G R FGFV +S
Sbjct: 179 ETDDSYIETPYQLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLS 238
Query: 142 SVEEVEAAAQQFNG 155
S E+E A +G
Sbjct: 239 SQSEMEDAIVSLHG 252
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
++V NL SV + L+ LF GNV V+Y + GRSR +GFV SS EVEAA
Sbjct: 307 VYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAA 362
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L++GN+P +VD+ +L + E G VE V+YDK +GRSR F FVTM +VE+ A ++
Sbjct: 81 RLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDANAVIEK 140
Query: 153 FNG 155
NG
Sbjct: 141 LNG 143
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSR--GFGFVTMSSVEEVEAAAQQ 152
K++VGNL +V S L F G V +V G S+ G+GFV+ S E+VEAA
Sbjct: 181 KVYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAISS 240
Query: 153 FN 154
FN
Sbjct: 241 FN 242
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNLP+S+ L LFE G+V V+ D+++GRS+GF FV MS+ EE EAA +
Sbjct: 1 MNIYVGNLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIE 60
Query: 152 QFNGY-------VSNKLSPK 164
+ NG+ V NK P+
Sbjct: 61 KLNGHELDGRTIVVNKAKPR 80
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFVGNLP+++ S +++ F AG V+ +IYDKVT RSRGF FVTM++ EE A Q
Sbjct: 119 RLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQM 178
Query: 153 FNG 155
FNG
Sbjct: 179 FNG 181
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V + L FE + VI+++ +GRSRGFGFV+ + E+ +AA +
Sbjct: 221 KIYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEA 280
Query: 153 FNG 155
+G
Sbjct: 281 LDG 283
>gi|59802525|gb|AAX07506.1| unknown [Gemmata sp. Wa1-1]
Length = 163
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL + V QL G+F G+V+ VI D+ TGRS+GFGFV M+S +E +AA
Sbjct: 65 KLYVGNLGYGVTDEQLRGMFGPYGSVQTAQVIMDRDTGRSKGFGFVEMNSDQEAQAAIAG 124
Query: 153 FNGYVS 158
NG +S
Sbjct: 125 MNGQMS 130
>gi|428211720|ref|YP_007084864.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
gi|428000101|gb|AFY80944.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
Length = 181
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L++GNLP VD +L +F AG+ VI D+ TG+ RGFGFVT+ + E+ + +
Sbjct: 3 IRLYIGNLPKEVDRKELQDVFAEAGDSVTTKVITDRKTGKCRGFGFVTVKNDEQADEFIE 62
Query: 152 QFNGYV 157
+FNGY+
Sbjct: 63 KFNGYM 68
>gi|116747535|ref|YP_844222.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
gi|116696599|gb|ABK15787.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
Length = 122
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL+VGNL F S QL LF G VE V+ D+ +GRSRGFGFV MS+ EE + A
Sbjct: 3 MKLYVGNLSFQTSSEQLRELFSQVGTVESATVVEDRESGRSRGFGFVEMSTKEEGQKAIA 62
Query: 152 QFNG 155
+ NG
Sbjct: 63 ELNG 66
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V S LAG F G+V V++D TGRSRG+GFV SS E+E A +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 153 FNGY 156
+G+
Sbjct: 238 LDGF 241
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++VDSA LA + + N E+V +Y++ TG+SRGF FVTMS+VE+
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 153 FNG 155
+G
Sbjct: 146 LDG 148
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+F+GNL +S D+ L +F G+V V+YD+ TG+SRGFGFVTMS+ EV A Q
Sbjct: 115 KMFIGNLSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQN 174
Query: 153 FNG 155
+G
Sbjct: 175 LDG 177
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP++ DSAQLA + +VE V +YD+ +GRSRGF FVTMS+ E ++ +
Sbjct: 1 KLYVGNLPWTCDSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSVIDR 60
Query: 153 FNG 155
+G
Sbjct: 61 LDG 63
>gi|399031232|ref|ZP_10731328.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
gi|398070499|gb|EJL61796.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
Length = 119
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LPFS++ A L FE G V+ +I DK TGRS+GFGFV M++ +E + A
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDEAQKAID 60
Query: 152 QFNG-------YVSNKLSPK 164
+ NG V NK PK
Sbjct: 61 ELNGATVQGRAIVVNKSEPK 80
>gi|381186866|ref|ZP_09894434.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
gi|379651172|gb|EIA09739.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
Length = 120
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LPFS++ A L FE G V+ +I DK TGRS+GFGFV M++ +E + A
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDEAQKAID 60
Query: 152 QFNG-------YVSNKLSPK 164
+ NG V NK PK
Sbjct: 61 ELNGATVQGRAIVVNKSEPK 80
>gi|42521942|ref|NP_967322.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|39574472|emb|CAE77976.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 104
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL ++VD QL GLF G V+ V I D+ TGRS+GF FV MSS E AA +
Sbjct: 4 KIYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAAIDK 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|326507732|dbj|BAJ86609.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 100
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT S +EV A
Sbjct: 15 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 74
Query: 153 FNG 155
+G
Sbjct: 75 LDG 77
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
Length = 197
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
+P+ KL+VGN+ ++VDS LA F G E+ V+YD++ G+SRGF FVT+S+ + +
Sbjct: 15 APNTKLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTEDAAKT 74
Query: 149 AAQQFNGY 156
A ++ +G+
Sbjct: 75 AIEKLDGH 82
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K FV N+P+SVD L F + G V ++ D +GRSRG GFVT ++ +E A
Sbjct: 119 KCFVANIPWSVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAISA 178
Query: 153 FNG 155
+G
Sbjct: 179 LDG 181
>gi|255639378|gb|ACU19985.1| unknown [Glycine max]
Length = 142
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
++ V NL + VD+ L LF GNV IYD+ +GRSRGFGFVT SS +EV +A Q
Sbjct: 60 RVHVSNLAWGVDNVALKSLFREQGNVLEARAIYDRESGRSRGFGFVTFSSPDEVNSAIQS 119
Query: 153 FNG 155
NG
Sbjct: 120 LNG 122
>gi|388522459|gb|AFK49291.1| unknown [Lotus japonicus]
Length = 162
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTM 140
S D +L+VGNLP+S+ S+QL +F AG V V+YD+VT RSRGF FVTM
Sbjct: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTM 159
>gi|430747489|ref|YP_007206618.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430019209|gb|AGA30923.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 118
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL FSV S +L LFE+ G V M V+ D+ TGRSRGFGFV M + E +AA Q
Sbjct: 4 RLYVGNLGFSVTSEELQALFESFGAVSMSQVVEDRETGRSRGFGFVEMVNDAEGDAAIQG 63
Query: 153 FNG 155
+G
Sbjct: 64 LDG 66
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+ GNLP++VDSA LA + + N E+V +Y++ TG+SRGF FVTMS+VE+
Sbjct: 80 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 139
Query: 153 FNG 155
+G
Sbjct: 140 LDG 142
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++V S LA F G+V V+YD TGRSRG+GFV SS E+E A +
Sbjct: 172 KLFVGNLSWTVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALES 231
Query: 153 FNGY 156
+G+
Sbjct: 232 LDGF 235
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGN+P +V + +LA + + G VE V+YDK +GRSR F FVTM +VE+ A ++
Sbjct: 71 RLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEK 130
Query: 153 FNG 155
NG
Sbjct: 131 LNG 133
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSR--GFGFV 138
LL E+ K++VGNL +V + L F G V +V G S+ G+GFV
Sbjct: 157 LLQAEESEFIDSPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFV 216
Query: 139 TMSSVEEVEAAAQQFN 154
T SS E+VEAA FN
Sbjct: 217 TFSSEEDVEAAISSFN 232
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGN+P +V + +LA + + G VE V+YDK +GRSR F FVTM +VE+ A ++
Sbjct: 71 RLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEK 130
Query: 153 FNG 155
NG
Sbjct: 131 LNG 133
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSR--GFGFV 138
LL E+ K++VGNL +V + L F G V +V G S+ G+GFV
Sbjct: 157 LLQAEESEFIDSPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFV 216
Query: 139 TMSSVEEVEAAAQQFN 154
T S E+VEAA FN
Sbjct: 217 TFPSEEDVEAAISSFN 232
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSV 143
G++ + KL++GN+P +V++ +L + + G VE V+YDK +GRSR F FVTM +V
Sbjct: 66 QGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 125
Query: 144 EEVEAAAQQFN 154
E+ AA ++ N
Sbjct: 126 EDANAAIEKLN 136
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSR--GFGFVTMSSVEEVEAAAQQ 152
K++VGN+ +V + L F G V +V G S+ G+GFVT SS EEV+AA
Sbjct: 176 KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISS 235
Query: 153 FN 154
FN
Sbjct: 236 FN 237
>gi|196008419|ref|XP_002114075.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190583094|gb|EDV23165.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 91
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG LP+ D L G F T G +E VIYD+ TG+SRG+GFVTM E A +
Sbjct: 8 KLFVGGLPYHTDDDSLRGYFATFGEIEEAAVIYDRQTGKSRGYGFVTMVDKEGATRACKD 67
Query: 153 FN 154
N
Sbjct: 68 TN 69
>gi|156348347|ref|XP_001621815.1| hypothetical protein NEMVEDRAFT_v1g47988 [Nematostella vectensis]
gi|156208091|gb|EDO29715.1| predicted protein [Nematostella vectensis]
Length = 78
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LPFS++ A L G FE G V+ +I DK TGRS+GFGFV M + E + A
Sbjct: 1 MNIFVGSLPFSIEEADLRGFFEEYGAVDSVKIISDKFTGRSKGFGFVEMPNDAEAQKAID 60
Query: 152 QFNG 155
+ NG
Sbjct: 61 ELNG 64
>gi|150024447|ref|YP_001295273.1| RNA-binding protein RbpA [Flavobacterium psychrophilum JIP02/86]
gi|149770988|emb|CAL42455.1| Putative RNA-binding protein RbpA [Flavobacterium psychrophilum
JIP02/86]
Length = 133
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LP+S++ A L FE G VE +I DK TGRS+GFGFV M + EE + A
Sbjct: 1 MNIFVGSLPWSIEEADLRESFEAYGAVESVKIITDKFTGRSKGFGFVEMPNDEEGQKAID 60
Query: 152 QFNG-------YVSNKLSPK 164
+ NG V NK PK
Sbjct: 61 ELNGATVDGRAIVVNKSEPK 80
>gi|428224588|ref|YP_007108685.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
gi|427984489|gb|AFY65633.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
Length = 150
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP +D +L F AG + VI D+ T + RGFGF+T+ S EE + +
Sbjct: 3 IRLYVGNLPKDLDRQELEAAFAEAGELLAIKVITDRKTNKCRGFGFITVKSDEEADEVIE 62
Query: 152 QFNGY 156
+FNGY
Sbjct: 63 KFNGY 67
>gi|298244419|ref|ZP_06968225.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297551900|gb|EFH85765.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 106
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++++VG LP+ L LFE G V VI D+ TGRS+GFGFV MSS +E AA +
Sbjct: 1 MRIYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARAAIE 60
Query: 152 QFNG 155
Q NG
Sbjct: 61 QLNG 64
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGN+P ++ + +L + E G VE V+YDK +GRSR F FVTM + E+ AA ++
Sbjct: 80 RLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIEK 139
Query: 153 FNG 155
NG
Sbjct: 140 LNG 142
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSR--GFGFV 138
L SDE SP K++VGNL +V + L F GNV +V G S+ GFGFV
Sbjct: 167 LQSDESQFVDSP-YKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFV 225
Query: 139 TMSSVEEVEAAAQQFN 154
T SS E+VE A FN
Sbjct: 226 TFSSEEDVEVAISSFN 241
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGN+P ++ + +L + E G VE V+YDK +GRSR F FVTM + E+ AA ++
Sbjct: 80 RLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIEK 139
Query: 153 FNG 155
NG
Sbjct: 140 LNG 142
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSR--GFGFV 138
L SDE SP K++VGNL +V + L F GNV +V G S+ GFGFV
Sbjct: 167 LQSDETQFVDSP-YKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFV 225
Query: 139 TMSSVEEVEAAAQQFN 154
T SS E+VE A FN
Sbjct: 226 TFSSEEDVEVAISSFN 241
>gi|428216940|ref|YP_007101405.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
gi|427988722|gb|AFY68977.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
Length = 154
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP +D +L +F +G VI D+ TGR RGFGFVT+++ E +
Sbjct: 3 VRLYVGNLPAELDRQELEKIFNESGETFSLKVITDRKTGRCRGFGFVTVNTPEAADTVID 62
Query: 152 QFNGY 156
+FNGY
Sbjct: 63 KFNGY 67
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL + VD++ L LF G V VIYD+ +GRSRGFGFVT S EEV A
Sbjct: 80 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISN 139
Query: 153 FNG 155
+G
Sbjct: 140 LDG 142
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 123 VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
V+YD++TGRSRGFGFVTMSS EE AA +QFNGY
Sbjct: 4 VVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGY 37
>gi|385808713|ref|YP_005845109.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
gi|383800761|gb|AFH47841.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG+LP+SVD L FE GNV VI D+ TGRSRGFGFV M + + ++A +
Sbjct: 4 KLFVGSLPWSVDDETLRETFEEHGNVVSAKVIKDRETGRSRGFGFVEMENSADAKSAIEA 63
Query: 153 FN 154
N
Sbjct: 64 LN 65
>gi|309790385|ref|ZP_07684950.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG-6]
gi|308227577|gb|EFO81240.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG6]
Length = 99
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KLFVGNL +S+D +L F GNV+ VI+D+ TGRSRGFGFV M V +V A +
Sbjct: 3 VKLFVGNLAWSIDDQKLESFFRAHGNVQSARVIHDRDTGRSRGFGFVEM-DVNDVSAVIR 61
Query: 152 QFNG 155
+G
Sbjct: 62 ATDG 65
>gi|440804413|gb|ELR25290.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 146
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L +S D L FE G V VI D+ TG+SRGFGFVT SS +E EAA
Sbjct: 4 KLFVGGLSWSTDDNSLRSAFEQHGEVIDAKVILDRDTGKSRGFGFVTFSSADEAEAAKGA 63
Query: 153 FN 154
N
Sbjct: 64 LN 65
>gi|406911424|gb|EKD51218.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 125
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL++GNLP+SVD AQL + G V VI DK GRS+GFGFV M++ EE + A
Sbjct: 4 KLYIGNLPYSVDDAQLESMAVAFGEVVSAQVIQDKFNGRSKGFGFVEMANDEEAQKAIDD 63
Query: 153 FN 154
N
Sbjct: 64 LN 65
>gi|298248970|ref|ZP_06972774.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297546974|gb|EFH80841.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 104
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++++VG LP+ L LFE G V VI D+ TGRS+GFGFV MSS +E AA +
Sbjct: 1 MRIYVGGLPYQSTEQDLIQLFEQIGQVTSATVITDRETGRSKGFGFVEMSSDDETRAAIE 60
Query: 152 QFNG 155
Q NG
Sbjct: 61 QLNG 64
>gi|395802857|ref|ZP_10482109.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
gi|395435298|gb|EJG01240.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
Length = 114
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LPFS++ A L FE G V+ +I DK TGRS+GFGFV M + E + A
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAID 60
Query: 152 QFNG-------YVSNKLSPK 164
+ NG V NK PK
Sbjct: 61 ELNGAVVSGRTIVVNKSEPK 80
>gi|223938363|ref|ZP_03630257.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223892932|gb|EEF59399.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 127
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLPF+ +L +F G V V I DK +GR RGFGFVTM + E +AA Q
Sbjct: 4 KLYVGNLPFTATENELQDMFAQHGPVTSVDLIMDKFSGRPRGFGFVTMETQEGAQAAVQA 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|406926747|gb|EKD62896.1| RNA-binding protein [uncultured bacterium]
Length = 134
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL ++V S +L LF AG V +VI K TGRS+GFGFV M + E +AA ++
Sbjct: 4 KLYVGNLSYTVTSDELRKLFAEAGTVVDAVVISFKDTGRSKGFGFVEMETEEAAKAAIEK 63
Query: 153 FNG 155
FNG
Sbjct: 64 FNG 66
>gi|302038618|ref|YP_003798940.1| putative RNA-binding protein RbpA [Candidatus Nitrospira defluvii]
gi|300606682|emb|CBK43015.1| putative RNA-binding protein RbpA [Candidatus Nitrospira defluvii]
Length = 108
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VG LP+S QL+ LF G VE +I DK TG+SRGFGFV M+S +E + A
Sbjct: 4 KIYVGGLPYSATEQQLSDLFAVHGAVESARIITDKFTGQSRGFGFVEMASSDEAQKAISA 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGN+P ++++ +L + E G +E+ V+YDK +GRSR FGFVTM +VE+ A ++
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 153 FN 154
N
Sbjct: 145 LN 146
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQ 152
K+++GNL +V + L F G V + G +S GFGFV+ SS EEVEAA Q
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244
Query: 153 FNGYV 157
N V
Sbjct: 245 LNNSV 249
>gi|223938031|ref|ZP_03629929.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223893245|gb|EEF59708.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 114
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL++GNL F + LF G V V I DK+TGR+RGFGFVTMS+ E +AA Q
Sbjct: 3 KLYIGNLSFDATENDVQDLFAQHGPVTEVNLIMDKMTGRARGFGFVTMSTKEGADAAVQN 62
Query: 153 FNG 155
NG
Sbjct: 63 LNG 65
>gi|146299063|ref|YP_001193654.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
gi|146153481|gb|ABQ04335.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
Length = 114
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LPFS++ A L FE G V+ +I DK TGRS+GFGFV M + E + A
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAID 60
Query: 152 QFNG-------YVSNKLSPK 164
+ NG V NK PK
Sbjct: 61 ELNGAVVSGRTIVVNKSEPK 80
>gi|428307295|ref|YP_007144120.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428248830|gb|AFZ14610.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 177
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 94 LKLFVGNLPF-SVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
++L+VGNLP V+ L +F AG+ VI D+ TG+ RGFGFVT+++ E+ +
Sbjct: 3 IRLYVGNLPKEDVERQDLQAIFAEAGDFVSTKVIKDRKTGKCRGFGFVTVNTDEQADQII 62
Query: 151 QQFNGYV 157
+QFNGY+
Sbjct: 63 EQFNGYM 69
>gi|412986787|emb|CCO15213.1| predicted protein [Bathycoccus prasinos]
Length = 260
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 89 NFSPD-LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
N+ D K++ GNL + +D L L GNV+ +I D+ TGRSRGFGFVTMSS +E
Sbjct: 165 NWDADGRKVYFGNLSWGMDHLDLQDLCAEFGNVDESRLITDRETGRSRGFGFVTMSSEKE 224
Query: 146 VEAAAQQFNG 155
E Q NG
Sbjct: 225 AEDVVAQLNG 234
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY-DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++KL++GNL + +D L LF + VI D+ TGRSRGFGF T+ S E ++A
Sbjct: 73 EVKLYIGNLSWDMDDQALNDLFSQYQASDCVIVTDRNTGRSRGFGFATVPSQEMADSAIA 132
Query: 152 QFN 154
N
Sbjct: 133 ALN 135
>gi|399108266|gb|AFP20557.1| RNA-binding protein [uncultured bacterium]
Length = 114
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL + +SA+L LF G V+ VI D+ TG+S+GFGFV M S +E +AA
Sbjct: 4 KLYVGNLNYRTNSAELEQLFAAYGTVKSVQVISDRHTGQSKGFGFVEMGSAQEAQAAMNA 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|298246745|ref|ZP_06970550.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297549404|gb|EFH83270.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 109
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++++VG LP+ L LFE G V VI D+ TGRS+GFGFV MSS +E A +
Sbjct: 1 MRIYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARVAIE 60
Query: 152 QFNG 155
Q NG
Sbjct: 61 QLNG 64
>gi|284108895|ref|ZP_06386469.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829840|gb|EFC34132.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
Length = 90
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +S +L LF G V+ V+ D+ TGRSRGFGFV M S EE A +
Sbjct: 4 KIYVGNLSYSTTDQELQDLFAQHGTVQSANVVTDRYTGRSRGFGFVEMGSGEEAGQAIEA 63
Query: 153 FNG-------YVSNKLSPKKK 166
NG V N+ PK+K
Sbjct: 64 LNGTDFQGRSLVVNEARPKEK 84
>gi|409076926|gb|EKM77294.1| hypothetical protein AGABI1DRAFT_130386 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 853
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 60 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
+SPSR RN+ S +FD S+ ++ S LFVGNLPF L LF AG
Sbjct: 180 TSPSRAARNL--SDDFDYNSIFGSEVLNASSSSCRNLFVGNLPFHCQWQDLKDLFRQAGT 237
Query: 120 VEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159
+ + GRSRGFG V ++ ++ E A + FNGY N
Sbjct: 238 IMRADVALGPDGRSRGFGTVVFATEQDAERAVKMFNGYEYN 278
>gi|426195272|gb|EKV45202.1| hypothetical protein AGABI2DRAFT_120172 [Agaricus bisporus var.
bisporus H97]
Length = 853
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 60 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
+SPSR RN+ S +FD S+ ++ S LFVGNLPF L LF AG
Sbjct: 180 TSPSRAARNL--SDDFDYNPIFGSEVLNASSSSCRNLFVGNLPFHCQWQDLKDLFRQAGT 237
Query: 120 VEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159
+ + GRSRGFG V ++ ++ E A + FNGY N
Sbjct: 238 IMRADVALGPDGRSRGFGTVVFATEQDAERAVKMFNGYEYN 278
>gi|347535511|ref|YP_004842936.1| putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
gi|345528669|emb|CCB68699.1| Putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
Length = 117
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LPFS++ A L FE G V+ +I DK TGRS+GFGFV M + E + A
Sbjct: 1 MNIFVGSLPFSIEEADLKESFEAYGAVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAID 60
Query: 152 QFNG-------YVSNKLSPK 164
+ NG V NK PK
Sbjct: 61 ELNGATVQGRAIVVNKSEPK 80
>gi|348502595|ref|XP_003438853.1| PREDICTED: RNA-binding protein 38-like [Oreochromis niloticus]
Length = 250
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + A L FET G+++ +VI DK TG+SRG+GFVTM E A +
Sbjct: 30 KIFVGGLPYHTNDASLRKYFETFGDIDEAVVITDKQTGKSRGYGFVTMVDRGAAERACKD 89
Query: 153 FNGYVSNK 160
N + +
Sbjct: 90 ANPIIDGR 97
>gi|223936242|ref|ZP_03628155.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223895104|gb|EEF61552.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 103
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL F + LF G V V I DK+TGR+RGFGFVTM++ E EAA
Sbjct: 4 KLYVGNLSFKATENDIQDLFSAHGPVNEVNLIMDKMTGRARGFGFVTMATAEGAEAAIAD 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEA 148
+P KLF+G + +S D L F G V +I D+ TGRSRGFGF+T +SVEE +
Sbjct: 39 APSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASS 98
Query: 149 AAQQFNG 155
A Q +G
Sbjct: 99 AIQALDG 105
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Length = 143
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
F +L+VGNLPF + L +FE G V + I DK+TG+SRGF FVTM S + +
Sbjct: 43 FMNRTRLYVGNLPFRISENDLREIFEQYGQVNEINLIVDKMTGQSRGFAFVTMESSQAAQ 102
Query: 148 AAAQQFNG 155
+A NG
Sbjct: 103 SAINNLNG 110
>gi|434391986|ref|YP_007126933.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
gi|428263827|gb|AFZ29773.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
Length = 160
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 94 LKLFVGNLPFS-VDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
++L++GNLP ++ +L +F AG+ VI D+ TG+ RGFGFVT++S E+ +
Sbjct: 3 VRLYIGNLPKEELERQELQAVFAEAGDSVTTKVIKDRKTGKCRGFGFVTVNSDEQADQII 62
Query: 151 QQFNGYV 157
++FNGY+
Sbjct: 63 EKFNGYM 69
>gi|168054272|ref|XP_001779556.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669037|gb|EDQ55632.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 84
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL + D L LF G V + YDK +GRSRGFGFVT+S+ EV A +
Sbjct: 2 KLFVGNLSWGCDETALESLFSDYGRVVEARIAYDKDSGRSRGFGFVTLSNETEVNTAIEN 61
Query: 153 FNG 155
+G
Sbjct: 62 LDG 64
>gi|34577107|ref|NP_059965.2| RNA-binding protein 38 isoform a [Homo sapiens]
gi|215273895|sp|Q9H0Z9.2|RBM38_HUMAN RecName: Full=RNA-binding protein 38; AltName: Full=CLL-associated
antigen KW-5; AltName: Full=HSRNASEB; AltName:
Full=RNA-binding motif protein 38; AltName:
Full=RNA-binding region-containing protein 1; AltName:
Full=ssDNA-binding protein SEB4
gi|410328979|gb|JAA33436.1| RNA binding motif protein 38 [Pan troglodytes]
Length = 239
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R +A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPLAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
>gi|223940412|ref|ZP_03632265.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223890907|gb|EEF57415.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 118
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNLPFS L F AG V V + D+ TGRSRGF F+ M S E +AA Q
Sbjct: 4 KLFVGNLPFSTTENDLQDHFSGAGTVIAVNIMQDRATGRSRGFAFIEMGSQAEADAAVAQ 63
Query: 153 FNG 155
++G
Sbjct: 64 YHG 66
>gi|384916047|ref|ZP_10016247.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
gi|384526575|emb|CCG92118.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
Length = 99
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLPF + L LFE G V + I DK+TG+SRGF FVTM + + ++A
Sbjct: 5 RLYVGNLPFRISENDLRELFEQYGQVNEINLIVDKMTGQSRGFAFVTMETSQAAQSAIDS 64
Query: 153 FNG-------YVSNKLSPKKK 166
NG V N+ P+++
Sbjct: 65 LNGTSISGRQIVVNEAKPREE 85
>gi|163847418|ref|YP_001635462.1| RNP-1 like RNA-binding protein [Chloroflexus aurantiacus J-10-fl]
gi|222525267|ref|YP_002569738.1| RNP-1 like RNA-binding protein [Chloroflexus sp. Y-400-fl]
gi|163668707|gb|ABY35073.1| RNP-1 like RNA-binding protein [Chloroflexus aurantiacus J-10-fl]
gi|222449146|gb|ACM53412.1| RNP-1 like RNA-binding protein [Chloroflexus sp. Y-400-fl]
Length = 100
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KLFVGNL +SVD A L F+ G+V VI D+ TGRSRGFGFV M V +V
Sbjct: 3 VKLFVGNLAWSVDDATLEAFFQDYGDVRSARVINDRETGRSRGFGFVEM-EVADVATVIS 61
Query: 152 QFNG 155
Q NG
Sbjct: 62 QTNG 65
>gi|344924967|ref|ZP_08778428.1| RNA-binding region RNP-1 [Candidatus Odyssella thessalonicensis
L13]
Length = 94
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+V NLP+SV+ LA LF G V VI DK++GRS+GFGFV M S ++ +A ++
Sbjct: 4 KLYVSNLPYSVNDQTLAQLFGDHGAVVSAKVITDKMSGRSKGFGFVEMESEQQANSAMEK 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|406944721|gb|EKD76419.1| hypothetical protein ACD_43C00118G0001 [uncultured bacterium]
Length = 84
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
LFVG + F L F AGNV +I DK+TGRSRGFGFV MS+ EE +AA Q +
Sbjct: 5 LFVGGIAFKSTDDTLREAFMQAGNVVSAKIIMDKMTGRSRGFGFVEMSTPEEAQAAIQMW 64
Query: 154 NG 155
+G
Sbjct: 65 DG 66
>gi|122890334|emb|CAJ74077.1| RNA recognition motif 1 [Guillardia theta]
Length = 199
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
LKLFVG L + VD QL F+ GN E V+ D+ +GRSRGFGFVT S A ++
Sbjct: 88 LKLFVGGLSWEVDDQQLMEAFQEFGNCEAKVMVDRYSGRSRGFGFVTFSEEHSAAKAIEE 147
Query: 153 FNG 155
NG
Sbjct: 148 MNG 150
>gi|283781639|ref|YP_003372394.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
gi|283440092|gb|ADB18534.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
Length = 156
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNLP++ S+ L LF+ G+V VI D+ TGRSRGFGFV M++ + E A
Sbjct: 4 RIYVGNLPWTYSSSDLEALFKPFGDVAAAEVIMDRETGRSRGFGFVQMANDADCEPAVNG 63
Query: 153 FNGYVSN 159
NG N
Sbjct: 64 LNGTNCN 70
>gi|443476345|ref|ZP_21066256.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
gi|443018689|gb|ELS32896.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
Length = 173
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGN-VEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP +D L +F +G+ V + VI D+ TG+ RGFGFVT+ S E + +
Sbjct: 3 IRLYVGNLPAELDRQALEKIFNESGDSVSLKVITDRKTGKCRGFGFVTVGSDEVADTVIE 62
Query: 152 QFNGY 156
+FNGY
Sbjct: 63 KFNGY 67
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K++VGNL + V+ L FE G V+ V I DK +GRS+GFGFV MSS E +AA +
Sbjct: 1 MKIYVGNLSYEVNEDDLRQAFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIE 60
Query: 152 QFNG 155
NG
Sbjct: 61 GLNG 64
>gi|168988195|gb|ACA35266.1| nuclear transport family protein [Cucumis sativus]
Length = 565
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ KLFVGNL +SV S L F+ GNV VIYD TG+SRG+GFV+ S+ E+E A
Sbjct: 24 EYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETAL 83
Query: 151 QQFN 154
+ N
Sbjct: 84 ETIN 87
>gi|426402318|ref|YP_007021289.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|425858986|gb|AFY00022.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
Length = 104
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL F+VD QL +F G V+ V I D+ TGRS+GF FV MS+ E AA ++
Sbjct: 4 KIYVGNLSFNVDQDQLNQVFAEFGTVDTVNVITDRETGRSKGFAFVEMSTETEARAAIEK 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|37522494|ref|NP_925871.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
gi|35213495|dbj|BAC90866.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
Length = 195
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP V +L +F AG V VI D+ TG+ RGFGF+T+S+ E ++ +
Sbjct: 3 VRLYVGNLPEEVTRQELEAIFAPAGEVVSLKVITDRKTGKCRGFGFLTVSTPEAADSFIE 62
Query: 152 QFNG 155
QFNG
Sbjct: 63 QFNG 66
>gi|432866535|ref|XP_004070851.1| PREDICTED: RNA-binding protein 38-like [Oryzias latipes]
Length = 251
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FET G+++ +VI DK TG+SRG+GFVTM E A +
Sbjct: 30 KIFVGGLPYHTSDASLRKYFETFGDIDEAVVITDKQTGKSRGYGFVTMVDRAAAEQACKD 89
Query: 153 FNGYVSNK 160
N + +
Sbjct: 90 ANPIIDGR 97
>gi|291287189|ref|YP_003504005.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884349|gb|ADD68049.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 94
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNL ++ +L LFE G V+ +I D+ TGRS+GFGFV M+ E+ +AA +
Sbjct: 1 MNIYVGNLSYTSSEDELFELFENMGQVDSARIITDRDTGRSKGFGFVEMADAEQAKAAIE 60
Query: 152 QFNG 155
Q NG
Sbjct: 61 QLNG 64
>gi|375144786|ref|YP_005007227.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361058832|gb|AEV97823.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 102
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ L+V NL F V+ LA LF G V VI D+ TGRSRGFGFV MSS EE A +
Sbjct: 1 MNLYVSNLGFQVNDDDLAKLFSQYGQVSSAKVIMDRETGRSRGFGFVEMSSDEEARKAIK 60
Query: 152 QFNG 155
+ G
Sbjct: 61 ELEG 64
>gi|430745977|ref|YP_007205106.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430017697|gb|AGA29411.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 130
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++VGNLP+ L LFET G V VI DK +GRSRGFGFV M +E +AA
Sbjct: 5 IYVGNLPYDTTGDDLKQLFETYGAVSNGQVIIDKFSGRSRGFGFVEMDHDDEAQAAIDAL 64
Query: 154 NG 155
NG
Sbjct: 65 NG 66
>gi|219847079|ref|YP_002461512.1| RNP-1 like RNA-binding protein [Chloroflexus aggregans DSM 9485]
gi|219541338|gb|ACL23076.1| RNP-1 like RNA-binding protein [Chloroflexus aggregans DSM 9485]
Length = 94
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSS 142
+KLFVGNLP+SV A+L +FE G V+ VI D+ TGRSRGFGFV + +
Sbjct: 3 VKLFVGNLPWSVGDAELGAIFEPHGEVQSARVINDRDTGRSRGFGFVEIET 53
>gi|407419|emb|CAA53063.1| SEB4D [Homo sapiens]
Length = 229
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFV 138
+ + G+ F+ K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFV
Sbjct: 14 MYGSQKGTTFT---KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 70
Query: 139 TMSSVEEVEAAAQQFNGYVSNK 160
TM+ E A + N + +
Sbjct: 71 TMADRAAAERACKDPNPIIDGR 92
>gi|219848507|ref|YP_002462940.1| RNP-1 like RNA-binding protein [Chloroflexus aggregans DSM 9485]
gi|219542766|gb|ACL24504.1| RNP-1 like RNA-binding protein [Chloroflexus aggregans DSM 9485]
Length = 103
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KLFVGNL +SVD A L F+ G+V VI D+ TGRSRGFGFV M V +V
Sbjct: 3 VKLFVGNLAWSVDDATLEQFFQAYGDVRSARVINDRETGRSRGFGFVEM-DVTDVAKVIS 61
Query: 152 QFNG 155
Q NG
Sbjct: 62 QTNG 65
>gi|392375173|ref|YP_003207006.1| RNP-1 like RNA-binding protein [Candidatus Methylomirabilis
oxyfera]
gi|258592866|emb|CBE69175.1| RNP-1 like RNA-binding protein (modular protein) [Candidatus
Methylomirabilis oxyfera]
Length = 140
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG----NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+++VGNLPF D A L LFE G +V+ +I D+ TGR+RGF FV M + + +AA
Sbjct: 32 RVYVGNLPFDTDEAALRTLFEEGGRRVADVK-IITDRDTGRARGFAFVEMENQSDAQAAI 90
Query: 151 QQFNG 155
Q NG
Sbjct: 91 QALNG 95
>gi|87308451|ref|ZP_01090592.1| RNA-binding protein [Blastopirellula marina DSM 3645]
gi|87289008|gb|EAQ80901.1| RNA-binding protein [Blastopirellula marina DSM 3645]
Length = 149
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+ S++L LF G V VI D+ TGRSRGFGFV M+S + AA +
Sbjct: 4 KLYVGNLPYGYGSSELENLFGQYGQVASASVINDRETGRSRGFGFVEMASDGDALAATEA 63
Query: 153 FNGY 156
NG+
Sbjct: 64 LNGF 67
>gi|224121390|ref|XP_002318570.1| predicted protein [Populus trichocarpa]
gi|222859243|gb|EEE96790.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG + F D L F+ GNV +I D+ TGRSRGFGFVT +S EE +A Q
Sbjct: 41 KLFVGGISFQTDDNSLKEAFDKYGNVVEARIIMDRETGRSRGFGFVTYTSSEEASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 LDG 103
>gi|481240|pir||S38382 SEB4D protein - human (fragment)
Length = 228
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFV 138
+ + G+ F+ K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFV
Sbjct: 13 MYGSQKGTTFT---KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 69
Query: 139 TMSSVEEVEAAAQQFNGYVSNK 160
TM+ E A + N + +
Sbjct: 70 TMADRAAAERACKDPNPIIDGR 91
>gi|356511826|ref|XP_003524623.1| PREDICTED: uncharacterized protein LOC100782808 [Glycine max]
Length = 274
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEA 148
+P KLF+G + +S D L F G V +I D+ TGRSRGFGF+T +SVEE +
Sbjct: 39 APSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASS 98
Query: 149 AAQQFNG 155
A Q +G
Sbjct: 99 AIQALDG 105
>gi|383872991|ref|NP_001244400.1| RNA-binding protein 38 [Macaca mulatta]
gi|402882171|ref|XP_003904624.1| PREDICTED: RNA-binding protein 38 [Papio anubis]
gi|380814450|gb|AFE79099.1| RNA-binding protein 38 isoform a [Macaca mulatta]
gi|383419781|gb|AFH33104.1| RNA-binding protein 38 isoform a [Macaca mulatta]
gi|384948092|gb|AFI37651.1| RNA-binding protein 38 isoform a [Macaca mulatta]
Length = 237
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPPAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
>gi|148231281|ref|NP_001085808.1| RNA binding motif protein 23 [Xenopus laevis]
gi|49118375|gb|AAH73374.1| MGC80803 protein [Xenopus laevis]
Length = 416
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEE 145
NF P ++L+VG+L F++ L G+FE G +E + + + TGRS+GFGF+T + E
Sbjct: 245 GNFGP-MRLYVGSLHFNITEEMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAEC 303
Query: 146 VEAAAQQFNGY 156
A +Q NG+
Sbjct: 304 ARRALEQLNGF 314
>gi|428207270|ref|YP_007091623.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428009191|gb|AFY87754.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 165
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 94 LKLFVGNLPFS-VDSAQLAGLFETAG-NVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
++L++GNLP VD +L +F AG NV VI D+ TG+ RGFGFVT+++ E+ +
Sbjct: 3 VRLYIGNLPKDEVDRQELQAVFADAGSNVTTKVIKDRKTGKCRGFGFVTVNNDEQADEII 62
Query: 151 QQFNGYV 157
+++NGY+
Sbjct: 63 EKYNGYM 69
>gi|53804863|ref|YP_113486.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
gi|53758624|gb|AAU92915.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
Length = 95
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL + V A L F G V+ V+ D+ TGRSRGFGFV M S +E +AA
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|296200795|ref|XP_002747755.1| PREDICTED: RNA-binding protein 38-like [Callithrix jacchus]
Length = 239
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPPAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
>gi|392412614|ref|YP_006449221.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390625750|gb|AFM26957.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 95
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K++VGNL F A L GLF T G VE VI D+ T RSRGFGF+ M++ EE A Q
Sbjct: 3 IKIYVGNLSFDSSEADLKGLFSTYGEVESAKVIVDQFTNRSRGFGFIEMTNREEGLKAIQ 62
Query: 152 QFN 154
+
Sbjct: 63 ALD 65
>gi|432858816|ref|XP_004068953.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Oryzias latipes]
Length = 529
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF+T S E + A +
Sbjct: 252 MRLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALE 311
Query: 152 QFNGY 156
Q NG+
Sbjct: 312 QLNGF 316
>gi|442771473|gb|AGC72159.1| RNA-binding protein [uncultured bacterium A1Q1_fos_560]
Length = 98
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VG LP+S QL+ LF G V +I DK TG+SRGFGFV MS E +AA
Sbjct: 4 KIYVGGLPYSTTEQQLSDLFAVHGAVTSARIITDKFTGQSRGFGFVEMSGDSEAQAAINA 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|348555754|ref|XP_003463688.1| PREDICTED: RNA-binding protein 38-like [Cavia porcellus]
Length = 239
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPPAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
>gi|34577105|ref|NP_906270.1| RNA-binding protein 38 isoform b [Homo sapiens]
Length = 121
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R +A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPLAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
>gi|359806697|ref|NP_001241034.1| uncharacterized protein LOC100799124 [Glycine max]
gi|255645259|gb|ACU23127.1| unknown [Glycine max]
Length = 275
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEA 148
+P KLF+G + +S D L F G V +I D+ TGRSRGFGF+T +SVEE +
Sbjct: 39 APSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASS 98
Query: 149 AAQQFNG 155
A Q +G
Sbjct: 99 AIQALDG 105
>gi|209154564|gb|ACI33514.1| RNA-binding protein 39 [Salmo salar]
Length = 525
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 26/136 (19%)
Query: 23 NSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLL 82
NS P + L S +LL PI + +S V +E ++ +
Sbjct: 202 NSVPLAIGL----SGQRLLGVPIIVQAS-------------------QVMAEKNRAAAMA 238
Query: 83 SDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTM 140
++ N P ++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T
Sbjct: 239 NNLQKGNAGP-MRLYVGSLHFNITEEMLRGIFEPFGKIESIQLMMDSETGRSKGYGFITF 297
Query: 141 SSVEEVEAAAQQFNGY 156
S E + A Q NG+
Sbjct: 298 SDTECAKKALDQLNGF 313
>gi|67479333|ref|XP_655048.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56472154|gb|EAL49662.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449707219|gb|EMD46918.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 320
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 78 EEDLLSDEDG-----SNFS-PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTG 130
+ D L + DG +NF + +FV NLPFS+DS +L LFE +++ V+YD+ T
Sbjct: 211 QRDELCNNDGLRTKETNFGLSETVIFVRNLPFSMDSFELKQLFEPCHSIDASVVYDRDTN 270
Query: 131 RSRGFGFVTMSSVEEVEAAAQQFNGYV 157
+S+G+GFV + + A +QFN Y+
Sbjct: 271 KSKGYGFVVFDTSIDQHTAIEQFNNYL 297
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+LFVGNL + + + +L FE G V ++VI ++ G S+GFG+V + E + A ++
Sbjct: 4 RLFVGNLEYQIKNFELKEFFERFGKVVDVVIMERYDGASKGFGYVEFDTEESAQKALREG 63
Query: 154 N 154
N
Sbjct: 64 N 64
>gi|59802519|gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
Length = 122
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 83 SDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTM 140
D F KL+VGNL + V +QL +F G+V VI D+ TGRS+GFGFV M
Sbjct: 29 GDRAAGEFVVGKKLYVGNLSWGVTDSQLQDMFTPYGSVVSAQVIMDRDTGRSKGFGFVEM 88
Query: 141 SSVEEVEAAAQQFNGYV-------SNKLSPKK 165
+ +E +AA +G V N+ PKK
Sbjct: 89 GTDQEAQAAITGMHGQVIEGRPLTVNEARPKK 120
>gi|328767903|gb|EGF77951.1| hypothetical protein BATDEDRAFT_27077 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEA 148
+P K+FVGNL + D+ LA F G V +V+ D+ TGRSRGFGFVT SS E A
Sbjct: 8 APGTKVFVGNLSWGTDNNSLADAFSQFGEVVDSIVLKDRETGRSRGFGFVTFSSPESASA 67
Query: 149 AAQQFNG 155
A NG
Sbjct: 68 AVDAMNG 74
>gi|440796891|gb|ELR17992.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 147
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L + D L FE G V VI D+ TG+SRGFGFVT +S +E EAA
Sbjct: 4 KLFVGGLSWGTDDNSLRSAFEQHGEVVDAKVIQDRDTGKSRGFGFVTFASADEAEAAKNA 63
Query: 153 FN 154
N
Sbjct: 64 LN 65
>gi|242015973|ref|XP_002428613.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
gi|212513276|gb|EEB15875.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
Length = 593
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 23/143 (16%)
Query: 17 KTLAFYNSK-PTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSSEF 75
K +A+ K P S L + KLL PIS+ QP + +R + A
Sbjct: 207 KGIAYVEFKDPESVPLAMGLTGQKLLGIPISV--------QPTQAEKNRQGNSTAPMM-- 256
Query: 76 DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSR 133
+ SD G ++L+VG+L F++ L G+FE G ++ + I D TGRS+
Sbjct: 257 -----MPSDMRGP-----MRLYVGSLHFNITEDMLRGIFEPFGKIDSIQLIMDPETGRSK 306
Query: 134 GFGFVTMSSVEEVEAAAQQFNGY 156
G+GF+T S ++ + A +Q NG+
Sbjct: 307 GYGFITFHSADDAKKALEQLNGF 329
>gi|375012528|ref|YP_004989516.1| RRM domain-containing RNA-binding protein [Owenweeksia
hongkongensis DSM 17368]
gi|359348452|gb|AEV32871.1| RRM domain-containing RNA-binding protein [Owenweeksia
hongkongensis DSM 17368]
Length = 111
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LP++ + L G FE G V+ +I DK TGRS+GFGFV M + + A
Sbjct: 1 MNIFVGSLPWATEEEDLRGAFEAYGEVDSVRIITDKFTGRSKGFGFVEMPDDDAAQKAID 60
Query: 152 QFNG-------YVSNKLSPK 164
+ NG V NK PK
Sbjct: 61 ELNGSQFGGRDIVVNKSEPK 80
>gi|407421|emb|CAA53064.1| SEB4B [Homo sapiens]
Length = 230
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 67 RNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVI 124
R + + F + G+ F+ K+FVG LP+ A L FE G++E +VI
Sbjct: 1 RRMQYNRRFVNVVPTFGKKKGTTFT---KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVI 57
Query: 125 YDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 58 TDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 93
>gi|309792103|ref|ZP_07686576.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG-6]
gi|308225847|gb|EFO79602.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG6]
Length = 114
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KLFVGNLP+SV A L +F + G+V+ VI D+ TGRSRGFGFV + V++V +
Sbjct: 6 VKLFVGNLPWSVGDADLERIFASHGDVQSARVINDRDTGRSRGFGFVEI-DVDDVAEVIR 64
Query: 152 QFNGY 156
+G+
Sbjct: 65 ATDGH 69
>gi|432858814|ref|XP_004068952.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Oryzias latipes]
Length = 502
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF+T S E + A +
Sbjct: 225 MRLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALE 284
Query: 152 QFNGY 156
Q NG+
Sbjct: 285 QLNGF 289
>gi|42522915|ref|NP_968295.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|426403373|ref|YP_007022344.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|39574111|emb|CAE79288.1| putative RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|425860041|gb|AFY01077.1| putative RNA-binding protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 116
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +S+D LA F GNVE ++ D+ TGRS+GF FV MS+ +E A +
Sbjct: 4 KIYVGNLSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATAIAK 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|47212427|emb|CAF93583.1| unnamed protein product [Tetraodon nigroviridis]
Length = 500
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
L+L+VG+L F++ L G+FE G +E + + D TGRS+G+GF+T + E + A +
Sbjct: 231 LRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMVDSDTGRSKGYGFITFADAECAKKALE 290
Query: 152 QFNGY 156
Q NG+
Sbjct: 291 QLNGF 295
>gi|157427752|ref|NP_001098782.1| RNA-binding protein 38 [Sus scrofa]
gi|147223340|emb|CAN13254.1| RNA-binding region (RNP1, RRM) containing 1 [Sus scrofa]
Length = 239
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPPAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPNIDGR 102
>gi|196232841|ref|ZP_03131691.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196223040|gb|EDY17560.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 107
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL F L F AG V ++ DK TG+SRGFGFVTMSS EE + A
Sbjct: 4 KLYVGNLSFDTTEMDLQDTFAEAGTVSEATLMQDKFTGKSRGFGFVTMSSSEEAQKAIDL 63
Query: 153 FNG 155
F+G
Sbjct: 64 FHG 66
>gi|410931844|ref|XP_003979305.1| PREDICTED: RNA-binding protein 39-like, partial [Takifugu rubripes]
Length = 324
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
L+L+VG+L F++ L G+FE G +E + + D TGRS+G+GF+T + E + A +
Sbjct: 142 LRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDTDTGRSKGYGFITFADAECAKKALE 201
Query: 152 QFNGY 156
Q NG+
Sbjct: 202 QLNGF 206
>gi|118488717|gb|ABK96169.1| unknown [Populus trichocarpa]
Length = 241
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+F+G + F D L F+ GNV +I D+ TGRSRGFGFVT +S EE +A Q
Sbjct: 41 KIFIGGISFQTDDNGLKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEEASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 MDG 103
>gi|385808623|ref|YP_005845019.1| RRM domain-containing protein [Ignavibacterium album JCM 16511]
gi|383800671|gb|AFH47751.1| RRM domain protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG+LP+SV+ A+L LFE G V V+ DK T RS+GFGFV + E AA
Sbjct: 4 KLFVGSLPWSVNDAELKTLFEPYGKVASAKVVTDKQTRRSKGFGFVEFETEAEASAAINA 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|224130158|ref|XP_002328668.1| predicted protein [Populus trichocarpa]
gi|222838844|gb|EEE77195.1| predicted protein [Populus trichocarpa]
Length = 142
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+F+G + F D L F+ GNV ++I D+ TGRSRGFGFVT +S EE +A Q
Sbjct: 41 KIFIGGISFQTDDNGLKEAFDKYGNVVEGIIIMDRDTGRSRGFGFVTYTSSEEASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 MDG 103
>gi|297733872|emb|CBI15119.3| unnamed protein product [Vitis vinifera]
Length = 163
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L +S D L F G V VI D+ TGRSRGFGFVT +S EE +A Q
Sbjct: 41 KLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 LDG 103
>gi|406950086|gb|EKD80418.1| cp31AHv protein [uncultured bacterium]
Length = 122
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG+L ++ L F AG V VI D+ TGRS+GFGFV MSS EE + A +
Sbjct: 4 KLFVGSLAWATTDDSLQAFFSQAGTVSSARVITDRATGRSKGFGFVEMSSDEEAQKAVAE 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|406929348|gb|EKD64949.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 106
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
LFVG LPF++ L LF + G V+ V I D+ TG SRGFGFV M + E+ + A ++
Sbjct: 5 LFVGGLPFTIAGEALEQLFGSVGQVQSVNIIKDRYTGNSRGFGFVEMVNDEDAKKAIEKL 64
Query: 154 NGY 156
NGY
Sbjct: 65 NGY 67
>gi|395829250|ref|XP_003787773.1| PREDICTED: RNA-binding protein 38 [Otolemur garnettii]
Length = 240
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPPAAPGG-----AMHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 54
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 55 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 103
>gi|406886422|gb|EKD33455.1| hypothetical protein ACD_76C00026G0004 [uncultured bacterium]
Length = 83
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGN+ + + L+ LF G V ++ DK+TGRSRGFGFV M++ E EAA +
Sbjct: 4 KLFVGNISWDATDSDLSKLFAEVGEVVSAQIVMDKLTGRSRGFGFVEMATDELAEAAIKA 63
Query: 153 FNG 155
+G
Sbjct: 64 LDG 66
>gi|167384180|ref|XP_001736837.1| ribonucleoprotein, chloroplast [Entamoeba dispar SAW760]
gi|165900615|gb|EDR26908.1| ribonucleoprotein, chloroplast, putative [Entamoeba dispar SAW760]
Length = 320
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
+FV NLPFS+DS +L LF+ +++ V+YDK T +S+G+GFV + + A +QFN
Sbjct: 235 IFVRNLPFSMDSFELKQLFDPCHSIDASVVYDKDTNKSKGYGFVVFDNSSDQHIAIEQFN 294
Query: 155 GYV 157
Y+
Sbjct: 295 NYL 297
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+LFVGNL + + + +L FE G V ++VI K G S+GFG+V + E + A ++
Sbjct: 4 RLFVGNLEYQIKNFELKDFFERFGKVVDVVIMKKYDGSSKGFGYVEFDTEESAQKALREG 63
Query: 154 N 154
N
Sbjct: 64 N 64
>gi|164658872|ref|XP_001730561.1| hypothetical protein MGL_2357 [Malassezia globosa CBS 7966]
gi|159104457|gb|EDP43347.1| hypothetical protein MGL_2357 [Malassezia globosa CBS 7966]
Length = 461
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAA 150
P LFVGNLPF L LF AGN++ + GRSRGFG V +S E+ + A
Sbjct: 383 PGRVLFVGNLPFHCQWQDLKDLFRAAGNIQRADVALNADGRSRGFGTVLFASPEDAQTAV 442
Query: 151 QQFNGY 156
+ ++GY
Sbjct: 443 RLYHGY 448
>gi|392397594|ref|YP_006434195.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
gi|390528672|gb|AFM04402.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
Length = 97
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ L+V NLP+S+ +L +F G V +I D+ T RSRGFGFV M S E+ EAA +
Sbjct: 1 MNLYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIE 60
Query: 152 QFNG 155
+ NG
Sbjct: 61 ELNG 64
>gi|329664824|ref|NP_001192952.1| RNA-binding protein 38 [Bos taurus]
gi|296480906|tpg|DAA23021.1| TPA: RNA binding motif protein 38-like [Bos taurus]
Length = 239
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFSRPPAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPNIDGR 102
>gi|31580878|dbj|BAC77543.1| hypothetical protein [Danio rerio]
Length = 246
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FET G+++ +VI D+ TG+SRG+GFVTM E A +
Sbjct: 26 KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKD 85
Query: 153 FNGYVSNK 160
N + +
Sbjct: 86 PNPIIDGR 93
>gi|220908811|ref|YP_002484122.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219865422|gb|ACL45761.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 158
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFET-AGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
++L+VGNLP +D +L LF T G + V+ D+ TG+ RGFGFVT+ + E+ +
Sbjct: 3 VRLYVGNLPKELDRKELEALFATEVGEIGSTKVVTDRKTGKCRGFGFVTVETNEQADQVI 62
Query: 151 QQFNGYV 157
++ NG++
Sbjct: 63 EKLNGHL 69
>gi|410659225|ref|YP_006911596.1| RNA-binding region RNP-1 [Dehalobacter sp. DCA]
gi|410662211|ref|YP_006914582.1| RNA-binding region RNP-1 [Dehalobacter sp. CF]
gi|409021580|gb|AFV03611.1| RNA-binding region RNP-1 [Dehalobacter sp. DCA]
gi|409024567|gb|AFV06597.1| RNA-binding region RNP-1 [Dehalobacter sp. CF]
Length = 84
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLP+S S +L F GNV +I D+ TGRSRGFGFV ++S E+ E A++
Sbjct: 5 LYVGNLPWSTTSEELTEYFARFGNVIGSRIITDRETGRSRGFGFVEVAS-EDAERLAEEL 63
Query: 154 NG 155
NG
Sbjct: 64 NG 65
>gi|359457481|ref|ZP_09246044.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
Length = 137
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM----VIYDKVTGRSRGFGFVTMSSVEEVEAA 149
++L++GNLP +D +LA LF TA E+ V+ D+ TG+ RGFGFVT+ + E+ +
Sbjct: 3 IRLYIGNLPKELDRDELAALF-TAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQV 61
Query: 150 AQQFNGYV 157
+ NG+V
Sbjct: 62 IAKLNGHV 69
>gi|428165677|gb|EKX34667.1| hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712]
Length = 219
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 77 QEEDLLSDEDGSN-FSPDLK----LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVT 129
Q++D + + G F D K LFVGNLPF + A+L LFE G V V I+D+ +
Sbjct: 113 QKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQES 172
Query: 130 GRSRGFGFVTMSSVEEVEAAAQQFNG 155
GR RGFGFV + + + A NG
Sbjct: 173 GRPRGFGFVDYDNEQSAKDAVSNLNG 198
>gi|430741539|ref|YP_007200668.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430013259|gb|AGA24973.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 119
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL ++V+ + L LF G V+ +I D+ T RS+GFGFV M + + +AA Q
Sbjct: 4 KLYVGNLTYNVNESDLEALFSQFGTVQSAQIIVDRDTNRSKGFGFVEMDTDAQAQAAIQG 63
Query: 153 FNGY 156
NG+
Sbjct: 64 LNGH 67
>gi|407039226|gb|EKE39520.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 320
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
+FV NLPFS+DS +L LFE +++ V+YD+ T +S+G+GFV + + A +QFN
Sbjct: 235 IFVRNLPFSMDSFELKQLFEPCHSIDASVVYDRDTNKSKGYGFVVFDNSVDQHTAIEQFN 294
Query: 155 GYV 157
Y+
Sbjct: 295 NYL 297
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+LFVGNL + + + +L FE G V ++VI ++ G S+GFG+V + E + A ++
Sbjct: 4 RLFVGNLEYQIKNFELKEFFERFGKVVDVVIMERYDGASKGFGYVEFDTEESAQKALREG 63
Query: 154 N 154
N
Sbjct: 64 N 64
>gi|195116809|ref|XP_002002944.1| GI10246 [Drosophila mojavensis]
gi|193913519|gb|EDW12386.1| GI10246 [Drosophila mojavensis]
Length = 617
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 358 MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALE 417
Query: 152 QFNGY 156
Q NG+
Sbjct: 418 QLNGF 422
>gi|481241|pir||S38383 SEB4B protein - human (fragment)
Length = 229
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 82 LSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVT 139
+ G+ F+ K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVT
Sbjct: 15 FGKKKGTTFT---KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 71
Query: 140 MSSVEEVEAAAQQFNGYVSNK 160
M+ E A + N + +
Sbjct: 72 MADRAAAERACKDPNPIIDGR 92
>gi|51859091|gb|AAH81649.1| Rbm38 protein [Danio rerio]
Length = 221
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FET G+++ +VI D+ TG+SRG+GFVTM E A +
Sbjct: 13 KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKD 72
Query: 153 FNGYVSNK 160
N + +
Sbjct: 73 PNPIIDGR 80
>gi|118788821|ref|XP_317010.3| AGAP008433-PA [Anopheles gambiae str. PEST]
gi|116122929|gb|EAA12873.4| AGAP008433-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 32/147 (21%)
Query: 17 KTLAFYNSK-PTSFSLLSSSSSHKLLAKPISISSSFIH----SFQPLPSSPSRFVRNVAV 71
K +A+ K P S +L S KLL PIS+ + + QP P +P +
Sbjct: 212 KGIAYIEFKDPESVALALGLSGQKLLGIPISVQHTQAEKNRMASQP-PVAPPK------- 263
Query: 72 SSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVT 129
N S ++L+VG+L F++ L G+FE G ++ + I D T
Sbjct: 264 -----------------NPSGPMRLYVGSLHFNITEDMLNGIFEPFGKIDNIQLIMDADT 306
Query: 130 GRSRGFGFVTMSSVEEVEAAAQQFNGY 156
GRS+G+GF+T + ++ + A +Q NG+
Sbjct: 307 GRSKGYGFITFHNADDAKKALEQLNGF 333
>gi|55733834|gb|AAV59341.1| unknown protein [Oryza sativa Japonica Group]
gi|125551313|gb|EAY97022.1| hypothetical protein OsI_18943 [Oryza sativa Indica Group]
gi|222630664|gb|EEE62796.1| hypothetical protein OsJ_17599 [Oryza sativa Japonica Group]
Length = 102
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 82 LSDEDGSNFSP-DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVI-YDKVTGRSRGFGFVT 139
D D + SP + +++VGNLPFS + L F G + I +D V GRSRGFGFV
Sbjct: 5 WRDSDYKDRSPLEYRVYVGNLPFSANDRSLKDSFANYGAISAEIAWDSVMGRSRGFGFVN 64
Query: 140 MSSVEEVEAAAQQFNG 155
E V AA Q NG
Sbjct: 65 FEDSESVNAAIQGMNG 80
>gi|417397613|gb|JAA45840.1| Putative rna-binding protein 38 [Desmodus rotundus]
Length = 236
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPTPCAPSAGFPRPPAAPGT------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM E A + N + +
Sbjct: 54 FEIFGDIEEAVVITDRQTGKSRGYGFVTMVDRAAAERACKDPNPNIDGR 102
>gi|373854326|ref|ZP_09597124.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391231688|ref|ZP_10267894.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
gi|372472193|gb|EHP32205.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391221349|gb|EIP99769.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
Length = 122
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGN+ F +L F GNV V DK+TGR RGF FVTMS+ EE + AA++
Sbjct: 5 KLYVGNMSFKTSEDELRSAFGQFGNVTDVYVAMDKMTGRPRGFAFVTMSTPEEAKIAAEK 64
Query: 153 FNG 155
NG
Sbjct: 65 LNG 67
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV+ L F GNV V+ D+ +GRS+GFGFV M+S E +AA
Sbjct: 4 KLYVGNLPYSVNDDSLRHNFSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|213624756|gb|AAI71537.1| RNA binding motif protein 38 [Danio rerio]
Length = 234
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FET G+++ +VI D+ TG+SRG+GFVTM E A +
Sbjct: 26 KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKD 85
Query: 153 FNGYVSNK 160
N + +
Sbjct: 86 PNPIIDGR 93
>gi|158534029|ref|NP_001103597.1| RNA-binding protein 38 [Danio rerio]
gi|189230110|ref|NP_001121379.1| uncharacterized protein LOC100158467 [Xenopus (Silurana)
tropicalis]
gi|158253862|gb|AAI54218.1| Rbm38 protein [Danio rerio]
gi|183985579|gb|AAI66071.1| LOC100158467 protein [Xenopus (Silurana) tropicalis]
Length = 234
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FET G+++ +VI D+ TG+SRG+GFVTM E A +
Sbjct: 26 KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKD 85
Query: 153 FNGYVSNK 160
N + +
Sbjct: 86 PNPIIDGR 93
>gi|326931688|ref|XP_003211958.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like
[Meleagris gallopavo]
Length = 571
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 299 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 358
Query: 152 QFNGY 156
Q NG+
Sbjct: 359 QLNGF 363
>gi|390334887|ref|XP_003724037.1| PREDICTED: RNA-binding protein 38-like [Strongylocentrotus
purpuratus]
Length = 129
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L FE G +E +VI D+ +G+S+G+GFVTMS E E A ++
Sbjct: 11 KIFVGGLPYHTTDKSLRDHFEIYGTIEEAVVITDRTSGKSKGYGFVTMSDQREAETATKE 70
Query: 153 FNGYVSNK 160
N + +
Sbjct: 71 ANPIIDGR 78
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + + D TGRS+G+GF+T E+ + A +
Sbjct: 256 MRLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALE 315
Query: 152 QFNGY 156
Q NG+
Sbjct: 316 QLNGF 320
>gi|296421441|ref|XP_002840273.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636488|emb|CAZ84464.1| unnamed protein product [Tuber melanosporum]
Length = 91
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L + D L F+ GNVE +V+ D+ TGRSRGFGFV SS EE AA
Sbjct: 3 KLFIGGLAWHTDDDALRQKFQEFGNVEEAVVVKDRDTGRSRGFGFVRYSSDEEATAAMDN 62
Query: 153 FN 154
N
Sbjct: 63 MN 64
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 107 SAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
S++LA +FE AG V VI D+VT RSRGFGFVTM SVEE + A + FNG
Sbjct: 3 SSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNG 53
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + + S L F + VIY++ TGRSRGFGFV+ S E EAA +
Sbjct: 94 KIYAGNLGWRLTSEGLGDAFANQPGLLSAKVIYERDTGRSRGFGFVSFDSAENAEAALEA 153
Query: 153 FNG 155
NG
Sbjct: 154 MNG 156
>gi|384939270|gb|AFI33240.1| RNA-binding protein 38 isoform a [Macaca mulatta]
Length = 121
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPPAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
>gi|156346232|ref|XP_001621481.1| hypothetical protein NEMVEDRAFT_v1g76367 [Nematostella vectensis]
gi|156207460|gb|EDO29381.1| predicted protein [Nematostella vectensis]
Length = 88
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
K ++GNL +SVD L F V++ +I D+ TGR RGFGFVT S EE+E A +F
Sbjct: 8 KCYIGNLSYSVDEQALEDKFHGYNVVDVNIITDRETGRPRGFGFVTFGSKEEMEKAIDEF 67
Query: 154 NG 155
+G
Sbjct: 68 DG 69
>gi|403281374|ref|XP_003932163.1| PREDICTED: RNA-binding protein 39 [Saimiri boliviensis boliviensis]
Length = 502
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|327271618|ref|XP_003220584.1| PREDICTED: RNA-binding protein 39-like [Anolis carolinensis]
Length = 578
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF+T S E + A +
Sbjct: 306 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 365
Query: 152 QFNGY 156
Q NG+
Sbjct: 366 QLNGF 370
>gi|190402270|gb|ACE77680.1| RNA binding motif protein 39 isoform a (predicted) [Sorex araneus]
Length = 435
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|24582417|ref|NP_723245.1| CG11266, isoform C [Drosophila melanogaster]
gi|24582419|ref|NP_723246.1| CG11266, isoform D [Drosophila melanogaster]
gi|24582421|ref|NP_723247.1| CG11266, isoform F [Drosophila melanogaster]
gi|24582423|ref|NP_723248.1| CG11266, isoform G [Drosophila melanogaster]
gi|45550943|ref|NP_723244.2| CG11266, isoform E [Drosophila melanogaster]
gi|22945836|gb|AAN10616.1| CG11266, isoform C [Drosophila melanogaster]
gi|22945837|gb|AAN10617.1| CG11266, isoform D [Drosophila melanogaster]
gi|22945838|gb|AAN10618.1| CG11266, isoform F [Drosophila melanogaster]
gi|22945839|gb|AAN10619.1| CG11266, isoform G [Drosophila melanogaster]
gi|45445036|gb|AAN10615.2| CG11266, isoform E [Drosophila melanogaster]
Length = 287
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 28 MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALE 87
Query: 152 QFNGY 156
Q NG+
Sbjct: 88 QLNGF 92
>gi|395505312|ref|XP_003756986.1| PREDICTED: RNA-binding protein 39 [Sarcophilus harrisii]
Length = 557
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 283 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 342
Query: 152 QFNGY 156
Q NG+
Sbjct: 343 QLNGF 347
>gi|375103924|ref|ZP_09750185.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374664655|gb|EHR69440.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 129
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL +SV A L F G V V+ D+ +GRS+GFGFV M S EE +AA ++
Sbjct: 4 KLYVGNLAYSVTDASLQQQFAECGTVTSAKVMMDRDSGRSKGFGFVEMGSHEEAQAAIRK 63
Query: 153 FNG-------YVSNKLSPKKK 166
+G V N+ P+++
Sbjct: 64 LHGASVDGRALVVNEARPREE 84
>gi|332249061|ref|XP_003273679.1| PREDICTED: RNA-binding protein 39 [Nomascus leucogenys]
Length = 432
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 158 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 217
Query: 152 QFNGY 156
Q NG+
Sbjct: 218 QLNGF 222
>gi|431894348|gb|ELK04148.1| RNA-binding protein 39 [Pteropus alecto]
Length = 601
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 327 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 386
Query: 152 QFNGY 156
Q NG+
Sbjct: 387 QLNGF 391
>gi|403282459|ref|XP_003932666.1| PREDICTED: RNA-binding protein 38 [Saimiri boliviensis boliviensis]
Length = 216
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|19851930|gb|AAL99924.1|AF432218_1 CLL-associated antigen KW-5 [Homo sapiens]
gi|17511712|gb|AAH18711.1| RBM38 protein [Homo sapiens]
gi|119595926|gb|EAW75520.1| RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a [Homo
sapiens]
gi|119595927|gb|EAW75521.1| RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a [Homo
sapiens]
gi|123982260|gb|ABM82920.1| RNA binding motif protein 38 [synthetic construct]
gi|123997017|gb|ABM86110.1| RNA binding motif protein 38 [synthetic construct]
Length = 216
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|426241410|ref|XP_004014584.1| PREDICTED: RNA-binding protein 39 isoform 5 [Ovis aries]
Length = 530
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 256 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 315
Query: 152 QFNGY 156
Q NG+
Sbjct: 316 QLNGF 320
>gi|163845663|ref|YP_001633707.1| RNP-1 like RNA-binding protein [Chloroflexus aurantiacus J-10-fl]
gi|222523368|ref|YP_002567838.1| RNP-1 like RNA-binding protein [Chloroflexus sp. Y-400-fl]
gi|163666952|gb|ABY33318.1| RNP-1 like RNA-binding protein [Chloroflexus aurantiacus J-10-fl]
gi|222447247|gb|ACM51513.1| RNP-1 like RNA-binding protein [Chloroflexus sp. Y-400-fl]
Length = 94
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSS 142
+KLFVGNLP++V A+L +FE G V+ VI D+ TGRSRGFGFV + +
Sbjct: 3 VKLFVGNLPWNVGDAELGSIFEPHGEVQSARVINDRDTGRSRGFGFVEIET 53
>gi|88682991|gb|AAI05542.1| RBM39 protein [Bos taurus]
Length = 528
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 254 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 313
Query: 152 QFNGY 156
Q NG+
Sbjct: 314 QLNGF 318
>gi|426241402|ref|XP_004014580.1| PREDICTED: RNA-binding protein 39 isoform 1 [Ovis aries]
Length = 530
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|330688445|ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus]
Length = 530
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 256 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 315
Query: 152 QFNGY 156
Q NG+
Sbjct: 316 QLNGF 320
>gi|35493811|ref|NP_909122.1| RNA-binding protein 39 isoform a [Homo sapiens]
gi|281182530|ref|NP_001162566.1| RNA-binding protein 39 [Papio anubis]
gi|284004921|ref|NP_001164806.1| RNA-binding protein 39 [Oryctolagus cuniculus]
gi|149733225|ref|XP_001501869.1| PREDICTED: RNA-binding protein 39 isoform 1 [Equus caballus]
gi|296199703|ref|XP_002747279.1| PREDICTED: RNA-binding protein 39 isoform 2 [Callithrix jacchus]
gi|332858224|ref|XP_003316931.1| PREDICTED: uncharacterized protein LOC458443 isoform 1 [Pan
troglodytes]
gi|335304742|ref|XP_003360012.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|344279919|ref|XP_003411733.1| PREDICTED: RNA-binding protein 39 isoform 1 [Loxodonta africana]
gi|345789986|ref|XP_864959.2| PREDICTED: RNA-binding protein 39 isoform 3 [Canis lupus
familiaris]
gi|354477982|ref|XP_003501196.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Cricetulus
griseus]
gi|397523808|ref|XP_003831910.1| PREDICTED: RNA-binding protein 39 [Pan paniscus]
gi|426391507|ref|XP_004062114.1| PREDICTED: RNA-binding protein 39 isoform 1 [Gorilla gorilla
gorilla]
gi|28201880|sp|Q14498.2|RBM39_HUMAN RecName: Full=RNA-binding protein 39; AltName: Full=Hepatocellular
carcinoma protein 1; AltName: Full=RNA-binding motif
protein 39; AltName: Full=RNA-binding region-containing
protein 2; AltName: Full=Splicing factor HCC1
gi|405194|gb|AAA16347.1| splicing factor [Homo sapiens]
gi|119596565|gb|EAW76159.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|119596567|gb|EAW76161.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|146327034|gb|AAI41836.1| RNA binding motif protein 39 [Homo sapiens]
gi|164623752|gb|ABY64678.1| RNA binding motif protein 39, isoform 1 (predicted) [Papio anubis]
gi|165971473|gb|AAI58173.1| RNA binding motif protein 39 [Homo sapiens]
gi|166831598|gb|ABY90123.1| RNA binding motif protein 39 isoform a (predicted) [Callithrix
jacchus]
gi|169731519|gb|ACA64891.1| RNA binding motif protein 39 isoform a (predicted) [Callicebus
moloch]
gi|197215647|gb|ACH53039.1| RNA binding motif protein 39 isoform a (predicted) [Otolemur
garnettii]
gi|217038339|gb|ACJ76632.1| RNA binding motif protein 39 isoform a (predicted) [Oryctolagus
cuniculus]
gi|229368730|gb|ACQ63013.1| RNA binding motif protein 39 isoform a (predicted) [Dasypus
novemcinctus]
gi|351702535|gb|EHB05454.1| RNA-binding protein 39 [Heterocephalus glaber]
gi|380783277|gb|AFE63514.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|383408125|gb|AFH27276.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|384939254|gb|AFI33232.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|410218746|gb|JAA06592.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255434|gb|JAA15684.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292900|gb|JAA25050.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292904|gb|JAA25052.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350859|gb|JAA42033.1| RNA binding motif protein 39 [Pan troglodytes]
gi|440902514|gb|ELR53299.1| RNA-binding protein 39 [Bos grunniens mutus]
Length = 530
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|417411155|gb|JAA52027.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 491
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 217 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 276
Query: 152 QFNGY 156
Q NG+
Sbjct: 277 QLNGF 281
>gi|355784531|gb|EHH65382.1| RNA-binding motif protein 39 [Macaca fascicularis]
Length = 530
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|119596573|gb|EAW76167.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Homo
sapiens]
Length = 423
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|147900472|ref|NP_001086350.1| MGC81970 protein [Xenopus laevis]
gi|49522239|gb|AAH75146.1| MGC81970 protein [Xenopus laevis]
Length = 512
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF+T S E + A +
Sbjct: 223 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 282
Query: 152 QFNGY 156
Q NG+
Sbjct: 283 QLNGF 287
>gi|126291195|ref|XP_001371651.1| PREDICTED: RNA-binding protein 39 isoform 1 [Monodelphis domestica]
Length = 524
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|119596572|gb|EAW76166.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_e [Homo
sapiens]
Length = 445
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|225457213|ref|XP_002284026.1| PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera]
Length = 277
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L +S D L F G V VI D+ TGRSRGFGFVT +S EE +A Q
Sbjct: 41 KLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 LDG 103
>gi|397481117|ref|XP_003811802.1| PREDICTED: RNA-binding protein 38-like [Pan paniscus]
Length = 282
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 78 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 137
Query: 153 FNGYVSNK 160
N + +
Sbjct: 138 PNPIIDGR 145
>gi|417411216|gb|JAA52053.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 499
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 219 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 278
Query: 152 QFNGY 156
Q NG+
Sbjct: 279 QLNGF 283
>gi|339237675|ref|XP_003380392.1| RNA-binding protein 39 [Trichinella spiralis]
gi|316976770|gb|EFV59992.1| RNA-binding protein 39 [Trichinella spiralis]
Length = 680
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 23 NSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLL 82
+S P + SL +LL PI + QP S +R + +++ F Q
Sbjct: 281 DSVPLALSL----HGKRLLGAPIVV--------QPTQSEKNRMA-SAMLATAFTQ----- 322
Query: 83 SDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTM 140
N P +KL+VG+L F++ L G+FE G +E + + D T RSRG+GF+T
Sbjct: 323 ------NRGP-MKLYVGSLHFNITEEMLRGIFEPFGKIESIQLLKDPETSRSRGYGFITF 375
Query: 141 SSVEEVEAAAQQFNGY 156
+ E+ + A +Q NG+
Sbjct: 376 YNSEDAKRAMEQLNGF 391
>gi|224077247|ref|XP_002192236.1| PREDICTED: RNA-binding protein 39 [Taeniopygia guttata]
Length = 522
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + I D TGRS+G+GF+T + ++ + A +
Sbjct: 255 MRLYVGSLLFNITEEMLKGIFEPFGKIENIQLIMDPETGRSKGYGFLTFRNADDAKKALE 314
Query: 152 QFNGY 156
Q NG+
Sbjct: 315 QLNGF 319
>gi|348510343|ref|XP_003442705.1| PREDICTED: RNA-binding protein 38-like [Oreochromis niloticus]
Length = 244
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + A L FE G+++ +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 27 KIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMTDRGAAERACKD 86
Query: 153 FNGYVSNK 160
N + +
Sbjct: 87 PNPIIDGR 94
>gi|194384132|dbj|BAG64839.1| unnamed protein product [Homo sapiens]
Length = 521
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 241 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 300
Query: 152 QFNGY 156
Q NG+
Sbjct: 301 QLNGF 305
>gi|118403314|ref|NP_573505.2| RNA-binding protein 39 [Mus musculus]
gi|392346872|ref|XP_003749653.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Rattus
norvegicus]
gi|341941811|sp|Q8VH51.2|RBM39_MOUSE RecName: Full=RNA-binding protein 39; AltName: Full=Coactivator of
activating protein 1 and estrogen receptors;
Short=Coactivator of AP-1 and ERs; AltName:
Full=RNA-binding motif protein 39; AltName:
Full=RNA-binding region-containing protein 2; AltName:
Full=Transcription coactivator CAPER
gi|55991480|gb|AAH86645.1| RNA binding motif protein 39 [Mus musculus]
gi|74151058|dbj|BAE27657.1| unnamed protein product [Mus musculus]
gi|148674237|gb|EDL06184.1| RNA binding motif protein 39, isoform CRA_b [Mus musculus]
Length = 530
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|118100450|ref|XP_425690.2| PREDICTED: RNA-binding protein 39 [Gallus gallus]
gi|363741409|ref|XP_003642487.1| PREDICTED: RNA-binding protein 39-like [Gallus gallus]
Length = 522
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|126291198|ref|XP_001371677.1| PREDICTED: RNA-binding protein 39 isoform 2 [Monodelphis domestica]
Length = 533
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|74179655|dbj|BAE22477.1| unnamed protein product [Mus musculus]
Length = 521
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|303248437|ref|ZP_07334696.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
gi|302490148|gb|EFL50067.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
Length = 96
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLPFS + ++ LF G+VE V I D+ TGR RGFGFV MS E +AA +
Sbjct: 4 KLYVGNLPFSTNEDEIRNLFAAYGDVESVNLIVDRETGRLRGFGFVEMSP-EGADAAMEA 62
Query: 153 FNG 155
+G
Sbjct: 63 LDG 65
>gi|296199709|ref|XP_002747282.1| PREDICTED: RNA-binding protein 39 isoform 5 [Callithrix jacchus]
Length = 504
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 224 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 283
Query: 152 QFNGY 156
Q NG+
Sbjct: 284 QLNGF 288
>gi|194386036|dbj|BAG59582.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 223 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 282
Query: 152 QFNGY 156
Q NG+
Sbjct: 283 QLNGF 287
>gi|184185564|gb|ACC68962.1| RNA binding motif protein 39 isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 498
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|148674239|gb|EDL06186.1| RNA binding motif protein 39, isoform CRA_d [Mus musculus]
Length = 507
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 233 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 292
Query: 152 QFNGY 156
Q NG+
Sbjct: 293 QLNGF 297
>gi|410953912|ref|XP_003983612.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39 [Felis
catus]
Length = 523
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 249 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 308
Query: 152 QFNGY 156
Q NG+
Sbjct: 309 QLNGF 313
>gi|426241408|ref|XP_004014583.1| PREDICTED: RNA-binding protein 39 isoform 4 [Ovis aries]
Length = 508
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 228 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 287
Query: 152 QFNGY 156
Q NG+
Sbjct: 288 QLNGF 292
>gi|426241404|ref|XP_004014581.1| PREDICTED: RNA-binding protein 39 isoform 2 [Ovis aries]
Length = 524
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|17063213|gb|AAL32373.1| transcription coactivator CAPER [Mus musculus]
Length = 530
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|432101442|gb|ELK29624.1| RNA-binding protein 39 [Myotis davidii]
Length = 491
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 228 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 287
Query: 152 QFNGY 156
Q NG+
Sbjct: 288 QLNGF 292
>gi|194386804|dbj|BAG61212.1| unnamed protein product [Homo sapiens]
Length = 502
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 228 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 287
Query: 152 QFNGY 156
Q NG+
Sbjct: 288 QLNGF 292
>gi|193785136|dbj|BAG54289.1| unnamed protein product [Homo sapiens]
Length = 506
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 226 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 285
Query: 152 QFNGY 156
Q NG+
Sbjct: 286 QLNGF 290
>gi|336176064|ref|NP_001229528.1| RNA-binding protein 39 isoform c [Homo sapiens]
gi|296199707|ref|XP_002747281.1| PREDICTED: RNA-binding protein 39 isoform 4 [Callithrix jacchus]
gi|332858228|ref|XP_003316932.1| PREDICTED: uncharacterized protein LOC458443 isoform 2 [Pan
troglodytes]
gi|335304745|ref|XP_003360013.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719242|ref|XP_003363966.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|345789990|ref|XP_003433300.1| PREDICTED: RNA-binding protein 39 [Canis lupus familiaris]
gi|426391511|ref|XP_004062116.1| PREDICTED: RNA-binding protein 39 isoform 3 [Gorilla gorilla
gorilla]
gi|124297482|gb|AAI31544.1| RBM39 protein [Homo sapiens]
gi|194389138|dbj|BAG61586.1| unnamed protein product [Homo sapiens]
Length = 508
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 228 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 287
Query: 152 QFNGY 156
Q NG+
Sbjct: 288 QLNGF 292
>gi|4757926|ref|NP_004893.1| RNA-binding protein 39 isoform b [Homo sapiens]
gi|197097940|ref|NP_001125339.1| RNA-binding protein 39 [Pongo abelii]
gi|149733223|ref|XP_001501876.1| PREDICTED: RNA-binding protein 39 isoform 2 [Equus caballus]
gi|194044529|ref|XP_001925282.1| PREDICTED: RNA-binding protein 39 isoform 2 [Sus scrofa]
gi|296199701|ref|XP_002747278.1| PREDICTED: RNA-binding protein 39 isoform 1 [Callithrix jacchus]
gi|301762104|ref|XP_002916459.1| PREDICTED: RNA-binding protein 39-like [Ailuropoda melanoleuca]
gi|332858226|ref|XP_514808.3| PREDICTED: uncharacterized protein LOC458443 isoform 5 [Pan
troglodytes]
gi|344279921|ref|XP_003411734.1| PREDICTED: RNA-binding protein 39 isoform 2 [Loxodonta africana]
gi|345789988|ref|XP_865124.2| PREDICTED: RNA-binding protein 39 isoform 12 [Canis lupus
familiaris]
gi|354477984|ref|XP_003501197.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Cricetulus
griseus]
gi|426391509|ref|XP_004062115.1| PREDICTED: RNA-binding protein 39 isoform 2 [Gorilla gorilla
gorilla]
gi|75070825|sp|Q5RC80.1|RBM39_PONAB RecName: Full=RNA-binding protein 39; AltName: Full=RNA-binding
motif protein 39
gi|405192|gb|AAA16346.1| splicing factor [Homo sapiens]
gi|55727753|emb|CAH90627.1| hypothetical protein [Pongo abelii]
gi|119596568|gb|EAW76162.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|119596569|gb|EAW76163.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|296480931|tpg|DAA23046.1| TPA: RNA binding motif protein 39 [Bos taurus]
gi|307686241|dbj|BAJ21051.1| RNA binding motif protein 39 [synthetic construct]
gi|344246681|gb|EGW02785.1| RNA-binding protein 39 [Cricetulus griseus]
gi|380783275|gb|AFE63513.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|383408127|gb|AFH27277.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|384939256|gb|AFI33233.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|410218748|gb|JAA06593.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255438|gb|JAA15686.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292902|gb|JAA25051.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350855|gb|JAA42031.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350863|gb|JAA42035.1| RNA binding motif protein 39 [Pan troglodytes]
Length = 524
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|426241406|ref|XP_004014582.1| PREDICTED: RNA-binding protein 39 isoform 3 [Ovis aries]
Length = 502
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 228 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 287
Query: 152 QFNGY 156
Q NG+
Sbjct: 288 QLNGF 292
>gi|61557287|ref|NP_001013225.1| RNA-binding protein 39 [Rattus norvegicus]
gi|392346874|ref|XP_003749654.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Rattus
norvegicus]
gi|60552170|gb|AAH91394.1| RNA binding motif protein 39 [Rattus norvegicus]
gi|74196119|dbj|BAE32977.1| unnamed protein product [Mus musculus]
gi|149030834|gb|EDL85861.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Rattus
norvegicus]
Length = 524
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|52545994|emb|CAH18281.2| hypothetical protein [Homo sapiens]
Length = 513
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 233 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 292
Query: 152 QFNGY 156
Q NG+
Sbjct: 293 QLNGF 297
>gi|440912498|gb|ELR62060.1| RNA-binding protein 38, partial [Bos grunniens mutus]
Length = 225
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 21 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 80
Query: 153 FN 154
N
Sbjct: 81 PN 82
>gi|406831762|ref|ZP_11091356.1| RNA-binding protein (RRM domain) [Schlesneria paludicola DSM 18645]
Length = 101
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNLPF+V L G+F G V V DK TGR RGF FVTM+ +E+ + A +
Sbjct: 3 QIYVGNLPFTVSEPDLMGMFARYGRVSSVRMATDKSTGRPRGFAFVTMNRMEDSDEAIVR 62
Query: 153 FNG 155
NG
Sbjct: 63 LNG 65
>gi|302756609|ref|XP_002961728.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
gi|300170387|gb|EFJ36988.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
Length = 130
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L + VD L F G V VI D+ TGRSRGFGFVT + E +AA Q
Sbjct: 11 KLFIGGLAWGVDDGTLRTAFANYGEVTEARVIMDRETGRSRGFGFVTFENDNEAKAAVQG 70
Query: 153 FNGY 156
+G+
Sbjct: 71 MDGH 74
>gi|336176066|ref|NP_001229529.1| RNA-binding protein 39 isoform d [Homo sapiens]
gi|73991836|ref|XP_865202.1| PREDICTED: RNA-binding protein 39 isoform 16 [Canis lupus
familiaris]
gi|296199705|ref|XP_002747280.1| PREDICTED: RNA-binding protein 39 isoform 3 [Callithrix jacchus]
gi|332858230|ref|XP_003316933.1| PREDICTED: uncharacterized protein LOC458443 isoform 3 [Pan
troglodytes]
gi|335304749|ref|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719245|ref|XP_003363967.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|426391513|ref|XP_004062117.1| PREDICTED: RNA-binding protein 39 isoform 4 [Gorilla gorilla
gorilla]
Length = 502
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 228 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 287
Query: 152 QFNGY 156
Q NG+
Sbjct: 288 QLNGF 292
>gi|281346065|gb|EFB21649.1| hypothetical protein PANDA_004543 [Ailuropoda melanoleuca]
Length = 497
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 217 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 276
Query: 152 QFNGY 156
Q NG+
Sbjct: 277 QLNGF 281
>gi|156367097|ref|XP_001627256.1| predicted protein [Nematostella vectensis]
gi|156214160|gb|EDO35156.1| predicted protein [Nematostella vectensis]
Length = 86
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ + ++GNL +SVD L F V++ VI D+ TGR RGFGFVT S EE+E A
Sbjct: 4 EYRCYIGNLSYSVDEQALEEKFHGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAID 63
Query: 152 QFNG 155
+F+G
Sbjct: 64 EFDG 67
>gi|409991627|ref|ZP_11274872.1| RNP-1 like RNA-binding protein [Arthrospira platensis str. Paraca]
gi|291567422|dbj|BAI89694.1| RNA-binding protein [Arthrospira platensis NIES-39]
gi|409937517|gb|EKN78936.1| RNP-1 like RNA-binding protein [Arthrospira platensis str. Paraca]
Length = 181
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP +D +L +F G+ VI D+ TG+ RGFGFVT+ S + + +
Sbjct: 3 VRLYVGNLPKELDRKELQAVFAEEGDTISAKVITDRKTGKCRGFGFVTVQSDDLADQIVE 62
Query: 152 QFNGYV 157
++NG++
Sbjct: 63 KYNGFM 68
>gi|260804435|ref|XP_002597093.1| hypothetical protein BRAFLDRAFT_215789 [Branchiostoma floridae]
gi|229282356|gb|EEN53105.1| hypothetical protein BRAFLDRAFT_215789 [Branchiostoma floridae]
Length = 113
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L F+T G +E +VI D+ TG+SRG+GFVTM++ E E A +
Sbjct: 9 KIFVGGLPYHTTDDSLRSFFQTFGEIEEAVVITDRQTGKSRGYGFVTMATREAAEKACKD 68
Query: 153 FNGYVSNK 160
N + +
Sbjct: 69 PNPIIDGR 76
>gi|158338245|ref|YP_001519422.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|158308486|gb|ABW30103.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 137
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM----VIYDKVTGRSRGFGFVTMSSVEEVEAA 149
++L+VGNLP +D +LA LF TA E+ V+ D+ TG+ RGFGFVT+ + E+ +
Sbjct: 3 IRLYVGNLPKELDRDELAALF-TAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQV 61
Query: 150 AQQFNGYV 157
+ NG++
Sbjct: 62 IAKLNGHM 69
>gi|349604477|gb|AEQ00017.1| RNA-binding protein 39-like protein, partial [Equus caballus]
Length = 374
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 233 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 292
Query: 152 QFNGY 156
Q NG+
Sbjct: 293 QLNGF 297
>gi|431930897|ref|YP_007243943.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
gi|431829200|gb|AGA90313.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
Length = 90
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNLP++V A L F G V V I D++TG S+GFGFV MSS + +AA +
Sbjct: 1 MNIYVGNLPYNVKDADLRETFSRFGEVSQVTVIMDRLTGESKGFGFVEMSSNSQADAAIK 60
Query: 152 QFNG 155
NG
Sbjct: 61 GLNG 64
>gi|42521960|ref|NP_967340.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|39574490|emb|CAE77994.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 120
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SVD L F G V+ VI D+ TGRS+GFGFV MS + A ++
Sbjct: 4 KLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQAIER 63
Query: 153 FNG 155
NG
Sbjct: 64 GNG 66
>gi|392412892|ref|YP_006449499.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390626028|gb|AFM27235.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 109
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNL F QL LFE+ G VE +I DK TGR RGFGFV M EE A Q
Sbjct: 4 INIYVGNLSFQTSEDQLKELFESFGQVESATIISDKTTGRPRGFGFVKMPEREEGLKAIQ 63
Query: 152 QFN 154
+ +
Sbjct: 64 ELD 66
>gi|47222887|emb|CAF96554.1| unnamed protein product [Tetraodon nigroviridis]
Length = 224
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + A L FE G+++ +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 8 KIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMTDRGAAERACKD 67
Query: 153 FNGYVSNK 160
N + +
Sbjct: 68 PNPIIDGR 75
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGN+P +V + +L +F G VE V+YDK T RSR FGFVTMS+ EE AA +
Sbjct: 70 KLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEA 129
Query: 153 FNG 155
NG
Sbjct: 130 LNG 132
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +V + L F GN+ + G +S+G+GFVT SS EEVEAA
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 228
Query: 153 FNGYVS 158
FN VS
Sbjct: 229 FNNAVS 234
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGN+P +V + +L +F G VE V+YDK T RSR FGFVTMS+ EE AA +
Sbjct: 70 KLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEA 129
Query: 153 FNG 155
NG
Sbjct: 130 LNG 132
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +V + L F GN+ + G +S+G+GFVT SS EEVEAA
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 228
Query: 153 FNGYVS 158
FN VS
Sbjct: 229 FNNAVS 234
>gi|21754197|dbj|BAC04474.1| unnamed protein product [Homo sapiens]
Length = 211
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|62857615|ref|NP_001016788.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|62201342|gb|AAH93451.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|89273890|emb|CAJ83908.1| RNA-binding region (RNP1, RRM) containing 2 [Xenopus (Silurana)
tropicalis]
Length = 542
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 251 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 310
Query: 152 QFNGY 156
Q NG+
Sbjct: 311 QLNGF 315
>gi|444518299|gb|ELV12076.1| Adenylyl cyclase-associated protein 2 [Tupaia chinensis]
Length = 609
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGN+P +V + +L +F G VE V+YDK T RSR FGFVTMS+ EE AA +
Sbjct: 70 KLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEA 129
Query: 153 FNG 155
NG
Sbjct: 130 LNG 132
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL +V + L F GN+ + G +S+G+GFVT SS EEVEAA
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 228
Query: 153 FN 154
FN
Sbjct: 229 FN 230
>gi|55742352|ref|NP_001006916.1| RNA-binding protein 38 [Xenopus (Silurana) tropicalis]
gi|82236015|sp|Q6DIV4.1|RBM38_XENTR RecName: Full=RNA-binding protein 38; AltName: Full=RNA-binding
motif protein 38
gi|49523027|gb|AAH75431.1| RNA binding motif protein 38 [Xenopus (Silurana) tropicalis]
gi|89271379|emb|CAJ82907.1| RNA-binding region (RNP1, RRM) containing 1 [Xenopus (Silurana)
tropicalis]
Length = 219
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G+++ +VI D+ TG+SRG+GFVTMS E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|376316225|emb|CCF99622.1| RNA recognition motif-containing protein [uncultured Flavobacteriia
bacterium]
Length = 83
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVGNL + VD L FE G V+ VI D+ TGRSRGFGFV M + EE +AA
Sbjct: 1 MNIFVGNLAWGVDDVVLREAFEAFGAVDSARVITDRETGRSRGFGFVEMPNQEEAQAALD 60
Query: 152 QFNG 155
G
Sbjct: 61 GMEG 64
>gi|407929404|gb|EKG22234.1| hypothetical protein MPH_00413 [Macrophomina phaseolina MS6]
Length = 159
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L + D A L FE G VE +V+ D+ TGRSRGFGFV + + EAA Q
Sbjct: 3 KLFIGGLAWHTDDATLRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRFTQESDAEAAIQA 62
Query: 153 FN 154
N
Sbjct: 63 MN 64
>gi|395328131|gb|EJF60525.1| hypothetical protein DICSQDRAFT_181243 [Dichomitus squalens LYAD-421
SS1]
Length = 1772
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
LFVGNLPF + L LF AG V+ + GRSRGFG V+ S+ + E A + FN
Sbjct: 1038 LFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGADGRSRGFGTVSFSNEADAERAVRMFN 1097
Query: 155 GYVSN 159
GY N
Sbjct: 1098 GYEYN 1102
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG---RSRGFGFVTMSSVEEVEAAAQ 151
+LFVGNLP+ V L LF AG V + D G RSRG+G V +++ E+ A
Sbjct: 864 QLFVGNLPYRVRWQDLKDLFRRAGTV--LRADVSLGPDNRSRGYGTVLLATAEDAGRAVD 921
Query: 152 QFNGYV 157
FNGY
Sbjct: 922 MFNGYT 927
>gi|427776715|gb|JAA53809.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 263
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L FE+ G++E +VI D+ TG+SRG+GFVTM + E A ++
Sbjct: 15 KIFVGGLPYHTTDKSLRQFFESFGDIEEAVVITDRQTGKSRGYGFVTMVDRDAAERAVKE 74
Query: 153 FNGYVSNK 160
N + +
Sbjct: 75 ANPIIDGR 82
>gi|215820612|ref|NP_001135965.1| RNA binding motif protein 39 [Acyrthosiphon pisum]
Length = 501
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEE 145
+++ P +KL+VG+L +++ L G+FE G+V+ + + D TGRS+G+GF+T + E+
Sbjct: 233 THYGP-MKLYVGSLHYNITEEMLRGIFEPFGHVDNIQLMMDTETGRSKGYGFLTYRNAED 291
Query: 146 VEAAAQQFNGY 156
+ A + NG+
Sbjct: 292 AKKALEHLNGF 302
>gi|291245052|ref|XP_002742405.1| PREDICTED: MGC81970 protein-like isoform 2 [Saccoglossus
kowalevskii]
Length = 444
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + + D TGRS+G+GF+T E+ + A +
Sbjct: 144 MRLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALE 203
Query: 152 QFNGY 156
Q NG+
Sbjct: 204 QLNGF 208
>gi|410920095|ref|XP_003973519.1| PREDICTED: RNA-binding protein 38-like [Takifugu rubripes]
Length = 245
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + A L FE G+++ +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 27 KIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMTDRGAAERACKD 86
Query: 153 FNGYVSNK 160
N + +
Sbjct: 87 PNPIIDGR 94
>gi|170062828|ref|XP_001866838.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880603|gb|EDS43986.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 85
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+GNLP++V + +L G F G+V+ VIYDK TG SRG+GF+ S+ + A +
Sbjct: 9 KLFIGNLPWTVSTKELQGYFSKFGHVQSSNVIYDKTTGLSRGYGFIVFSTRDGYANATNK 68
>gi|351730017|ref|ZP_08947708.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 115
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+SV + L F GNV V+ D+ TGRS+GFGFV M+S E +AA
Sbjct: 4 KIYVGNLPYSVTDSVLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAISA 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|13278367|gb|AAH04000.1| Rbm39 protein [Mus musculus]
Length = 429
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 149 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 208
Query: 152 QFNGY 156
Q NG+
Sbjct: 209 QLNGF 213
>gi|317419004|emb|CBN81042.1| RNA-binding protein 24-B [Dicentrarchus labrax]
Length = 244
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + A L FE G+++ +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 27 KIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMTDRGAAERACKD 86
Query: 153 FNGYVSNK 160
N + +
Sbjct: 87 PNPIIDGR 94
>gi|170042808|ref|XP_001849104.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167866261|gb|EDS29644.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 92
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+GNLP++V + +L G F G+V+ VIYDK TG SRG+GF+ S+ + A +
Sbjct: 16 KLFIGNLPWTVSTKELQGYFSKFGHVQSSNVIYDKTTGLSRGYGFIVFSTRDGYANATNK 75
>gi|406997918|gb|EKE15908.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 93
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VG LP+S L F AG VE +I D+++GRS+GFGFV MS+ E + A +
Sbjct: 4 KLYVGGLPYSTTEESLGEHFSQAGAVESANIITDRMSGRSKGFGFVEMSTEEGAQKAIEM 63
Query: 153 FNG 155
F+G
Sbjct: 64 FHG 66
>gi|449265754|gb|EMC76900.1| RNA-binding protein 39, partial [Columba livia]
Length = 423
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF+T S E + A +
Sbjct: 151 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 210
Query: 152 QFNGY 156
Q NG+
Sbjct: 211 QLNGF 215
>gi|428223294|ref|YP_007107464.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
gi|427996634|gb|AFY75329.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
Length = 165
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGN-VEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP +D L +F +G+ V + +I D TG+ RGFGFVT+ + E +
Sbjct: 3 IRLYVGNLPAELDREGLEKIFSESGDSVSLKIISDTKTGKCRGFGFVTVETPEAATTVIE 62
Query: 152 QFNGY 156
+FNGY
Sbjct: 63 KFNGY 67
>gi|52076130|dbj|BAD46643.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076137|dbj|BAD46650.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|222642112|gb|EEE70244.1| hypothetical protein OsJ_30366 [Oryza sativa Japonica Group]
Length = 611
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 89 NFSP-DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEE 145
+FSP D ++VGNL + VD +L F G V V+ D+ TGRSRGFGFV+M+++ E
Sbjct: 521 SFSPKDFSIYVGNLRWDVDRLRLLKFFGEHGRVLVAQVVCDRQTGRSRGFGFVSMATLRE 580
Query: 146 VEAAAQQFNGYV 157
+ NG +
Sbjct: 581 PDDVIASLNGQI 592
>gi|392593259|gb|EIW82584.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 116
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL ++ L F T GNV +V+ D+ TGRSRGFGFVT SS +E E+A
Sbjct: 5 KIYVGNLSWNTTDDTLRQAFSTFGNVVDSVVMRDRDTGRSRGFGFVTYSSTQEAESAISG 64
Query: 153 FN 154
N
Sbjct: 65 LN 66
>gi|148226721|ref|NP_001086950.1| RNA binding motif protein 39 [Xenopus laevis]
gi|50414893|gb|AAH77813.1| Rnpc2-prov protein [Xenopus laevis]
Length = 540
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF+T S E + A +
Sbjct: 249 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 308
Query: 152 QFNGY 156
Q NG+
Sbjct: 309 QLNGF 313
>gi|410899993|ref|XP_003963481.1| PREDICTED: RNA-binding protein 38-like [Takifugu rubripes]
Length = 246
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + A L FE+ G+++ +VI DK TG+SRG+GFVTM E A +
Sbjct: 30 KIFVGGLPYHTNDASLRKYFESFGDIDEAVVITDKQTGKSRGYGFVTMVDRGAAERACKD 89
Query: 153 FNGYVSNK 160
N + +
Sbjct: 90 ANPIIDGR 97
>gi|51893978|ref|YP_076669.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM
14863]
gi|51857667|dbj|BAD41825.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM
14863]
Length = 86
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++VGNLP+S L LFE G VE +I D+ TGRSRGFGFV M+ E A +
Sbjct: 5 IYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRAIAEL 64
Query: 154 NGY 156
+ Y
Sbjct: 65 HNY 67
>gi|328858559|gb|EGG07671.1| hypothetical protein MELLADRAFT_71659 [Melampsora larici-populina
98AG31]
Length = 163
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL +S D+ L F G V +V+ D+ TGRSRGFGF+T S+ ++ +AA
Sbjct: 6 KLFVGNLAWSTDTNSLTQAFNQYGEVVDAIVMQDRETGRSRGFGFITFSNQDQAQAAIDA 65
Query: 153 FN 154
N
Sbjct: 66 LN 67
>gi|59858555|ref|NP_001012304.1| RNA-binding protein 39 [Danio rerio]
gi|27882534|gb|AAH44487.1| RNA binding motif protein 39a [Danio rerio]
gi|182892014|gb|AAI65689.1| Rbm39a protein [Danio rerio]
Length = 523
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E + A +
Sbjct: 246 MRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALE 305
Query: 152 QFNGY 156
Q NG+
Sbjct: 306 QLNGF 310
>gi|313240807|emb|CBY33099.1| unnamed protein product [Oikopleura dioica]
Length = 252
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L F+ G++E +VI D+ TG+SRG+GFVTM+ E+ + A Q+
Sbjct: 14 KIFVGGLPYHTTDDSLRQFFDVYGDIEEAVVITDRQTGKSRGYGFVTMAKKEDAQKAIQE 73
Query: 153 FN 154
N
Sbjct: 74 PN 75
>gi|300868683|ref|ZP_07113294.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
gi|300333244|emb|CBN58486.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
Length = 182
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP ++ +L +F G VI D+ TG+ RGFGFVT+++ E+ + +
Sbjct: 3 IRLYVGNLPKELERQELQAVFAEEGESVSAKVITDRKTGKCRGFGFVTVATDEQADQVIE 62
Query: 152 QFNGYV 157
++NG++
Sbjct: 63 KYNGFM 68
>gi|209523059|ref|ZP_03271616.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376001688|ref|ZP_09779547.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|423062488|ref|ZP_17051278.1| putative RNA-binding region protein [Arthrospira platensis C1]
gi|209496646|gb|EDZ96944.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375329917|emb|CCE15300.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|406716396|gb|EKD11547.1| putative RNA-binding region protein [Arthrospira platensis C1]
Length = 174
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP +D +L +F G+ VI D+ TG+ RGFGFVT+ S + + +
Sbjct: 3 VRLYVGNLPKELDRKELQAVFAEEGDTISAKVITDRKTGKCRGFGFVTVQSDDLADQIVE 62
Query: 152 QFNGYV 157
++NG++
Sbjct: 63 KYNGFM 68
>gi|294936221|ref|XP_002781664.1| Pre-mRNA-splicing factor SF2, putative [Perkinsus marinus ATCC
50983]
gi|239892586|gb|EER13459.1| Pre-mRNA-splicing factor SF2, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
S S D KLFVG LP + + G F G VE +V++D+ TGRSRGFGFV S V +
Sbjct: 20 SRESDDRKLFVGGLPAPCEKQHMDGYFSQFGPVEHSVVMFDRNTGRSRGFGFVVYSQVTD 79
Query: 146 VEAA 149
+E
Sbjct: 80 METC 83
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
K+FVG LP S D A+L F G V +V+YD+ TGR RGFG+V SS + EAA
Sbjct: 152 CKVFVGGLPNSCDQARLNDHFSRYGTVAEALVMYDRETGRHRGFGYVIYSSPADAEAA 209
>gi|226491121|ref|NP_001143351.1| uncharacterized protein LOC100275970 [Zea mays]
gi|195618716|gb|ACG31188.1| hypothetical protein [Zea mays]
Length = 295
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L F+ D L F GNV +I D+ +GRSRGFGF+T +S EE AA
Sbjct: 33 KLFVGGLSFATDETTLKDAFSEFGNVLEARIIIDRESGRSRGFGFITFTSTEEASAAMTS 92
Query: 153 FNG 155
+G
Sbjct: 93 MDG 95
>gi|212276175|ref|NP_001130201.1| hypothetical protein [Zea mays]
gi|194688532|gb|ACF78350.1| unknown [Zea mays]
gi|414887483|tpg|DAA63497.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
gi|414887484|tpg|DAA63498.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
Length = 308
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L F+ D L F GNV +I D+ +GRSRGFGF+T +S EE AA
Sbjct: 33 KLFVGGLSFATDETTLKDAFSEFGNVLEARIIIDRESGRSRGFGFITFTSTEEASAAMTS 92
Query: 153 FNG 155
+G
Sbjct: 93 MDG 95
>gi|156348369|ref|XP_001621824.1| hypothetical protein NEMVEDRAFT_v1g143489 [Nematostella vectensis]
gi|156208104|gb|EDO29724.1| predicted protein [Nematostella vectensis]
Length = 89
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ + ++GNL +SVD L F V++ VI D+ TGR RGFGFVT S EE+E A
Sbjct: 4 EYRCYIGNLSYSVDEQALEEKFHGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAID 63
Query: 152 QFNG 155
+F+G
Sbjct: 64 EFDG 67
>gi|432915990|ref|XP_004079241.1| PREDICTED: cold-inducible RNA-binding protein-like [Oryzias
latipes]
Length = 174
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLF+G L F + LA F G +E V I DK TGRSRGFGFV +VE+ +
Sbjct: 2 SDEGKLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKD 61
Query: 149 AAQQFNG 155
A NG
Sbjct: 62 ALDAMNG 68
>gi|428181461|gb|EKX50325.1| RNA recognition motif 1 [Guillardia theta CCMP2712]
Length = 199
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
LKLFV L + VD QL F+ GN E V+ D+ +GRSRGFGFVT S A ++
Sbjct: 88 LKLFVSGLSWEVDDQQLMEAFQEFGNCEAKVMVDRYSGRSRGFGFVTFSEEHSAAKAIEE 147
Query: 153 FNG 155
NG
Sbjct: 148 MNG 150
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+SV + L F GNV V+ D+ TGRS+GFGFV M+S E +AA
Sbjct: 4 KIYVGNLPYSVTDSTLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAITG 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|426351703|ref|XP_004043369.1| PREDICTED: RNA-binding protein 24 [Gorilla gorilla gorilla]
Length = 335
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|429242947|ref|NP_594207.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe 972h-]
gi|391358175|sp|Q9P3U1.3|YKX5_SCHPO RecName: Full=Uncharacterized RNA-binding protein C328.05
gi|347834162|emb|CAB96000.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe]
Length = 464
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVE 144
+G + PD +LFVGNLP++V L LF AG+V I GRSRG G V MSS++
Sbjct: 171 NGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMK 230
Query: 145 EVEAAAQQFN 154
E A Q +
Sbjct: 231 EAMHAIQMLH 240
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
++VGNLP++ L LF G+V I + TGRS+GFG V + + ++ ++ N
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
Query: 155 GY 156
GY
Sbjct: 372 GY 373
>gi|432865706|ref|XP_004070573.1| PREDICTED: RNA-binding protein 39-like [Oryzias latipes]
Length = 516
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF++ + E + A +
Sbjct: 246 MRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALE 305
Query: 152 QFNGY 156
Q NG+
Sbjct: 306 QLNGF 310
>gi|298708562|emb|CBJ30647.1| RNA-binding protein, putative [Ectocarpus siliculosus]
Length = 462
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 16 PKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSSEF 75
P+ F + ++ + + H + + I + + PLP + + RN A +
Sbjct: 101 PRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAAD--RNSANARGG 158
Query: 76 DQEEDLLSDEDGSNFSP-DLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRS 132
Q + G N +P K+FVG L V+ A G F G VE +V+YDK TGRS
Sbjct: 159 SQ---VGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRS 215
Query: 133 RGFGFVTMSS 142
RGFGF+T S
Sbjct: 216 RGFGFITYDS 225
>gi|294877866|ref|XP_002768166.1| pre-mRNA-splicing factor SF2, putative [Perkinsus marinus ATCC
50983]
gi|239870363|gb|EER00884.1| pre-mRNA-splicing factor SF2, putative [Perkinsus marinus ATCC
50983]
Length = 354
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
S S D KLF+G LP + + + F G VE MV+YD+ TGRSRGFGFV S + +
Sbjct: 25 SRESDDRKLFIGGLPGACEKQHMDSYFSQFGPVEHTMVMYDRNTGRSRGFGFVVYSQLTD 84
Query: 146 VEAA 149
+E
Sbjct: 85 METC 88
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
K+FVG LP S D A+L F G V +V+YD+ TGR RGFG+V SS + AA
Sbjct: 159 CKVFVGGLPNSCDQARLHDHFSRYGTVAEALVMYDRETGRHRGFGYVIYSSPADANAA 216
>gi|392396499|ref|YP_006433100.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
gi|390527577|gb|AFM03307.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
Length = 95
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ L+V NLP+S+ +L +F G V +I D+ T RSRGFGFV M S E+ EAA +
Sbjct: 1 MNLYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIE 60
Query: 152 QFNG 155
+ NG
Sbjct: 61 ELNG 64
>gi|149924767|ref|ZP_01913111.1| probable nucleic acid-binding protein [Plesiocystis pacifica SIR-1]
gi|149814351|gb|EDM73949.1| probable nucleic acid-binding protein [Plesiocystis pacifica SIR-1]
Length = 155
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 85 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSS 142
E G N P +LFVG L + +S L LF G V M++ D+ TG SRGFGFVTM++
Sbjct: 67 EAGGNSGPPCRLFVGGLSWDTESDSLRELFAKVGAVVDAMIVTDRDTGDSRGFGFVTMAN 126
Query: 143 VEEVEAAAQQFNG 155
++ A ++ G
Sbjct: 127 RKDATKAMKELGG 139
>gi|300797848|ref|NP_001178029.1| RNA-binding protein 24 [Rattus norvegicus]
Length = 236
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|392427255|ref|YP_006468249.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
acidiphilus SJ4]
gi|391357218|gb|AFM42917.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
acidiphilus SJ4]
Length = 82
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLP++ + +L F G+VE +I D+ TGRSRGFGF+ + E+ E AQ+
Sbjct: 4 LYVGNLPWNTTADELGEFFSNYGHVESSRIITDRETGRSRGFGFIEVGE-EDAERMAQEL 62
Query: 154 NG 155
NG
Sbjct: 63 NG 64
>gi|328858605|gb|EGG07717.1| hypothetical protein MELLADRAFT_62481 [Melampsora larici-populina
98AG31]
Length = 225
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
K++VGNL + D L F G V+ + + GRSRGFGFVT SSV+E E A
Sbjct: 4 CKVYVGNLAWGTDDPTLGAHFAPIGQVKDAVVMRSEGRSRGFGFVTFSSVQEAEHAIATM 63
Query: 154 N 154
N
Sbjct: 64 N 64
>gi|426241412|ref|XP_004014585.1| PREDICTED: RNA-binding protein 39 isoform 6 [Ovis aries]
gi|426241416|ref|XP_004014587.1| PREDICTED: RNA-binding protein 39 isoform 8 [Ovis aries]
Length = 373
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 93 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 152
Query: 152 QFNGY 156
Q NG+
Sbjct: 153 QLNGF 157
>gi|321460847|gb|EFX71885.1| hypothetical protein DAPPUDRAFT_93311 [Daphnia pulex]
Length = 81
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+FVGN+P+ V QL +F AG V ++ D+ TGRSRGFGF S + + A +
Sbjct: 4 VFVGNIPYGVSEDQLKAIFSEAGPVVSFRIVQDRETGRSRGFGFCEFQSPDSAQTAMRNL 63
Query: 154 NGYVSNKLS 162
NGY N S
Sbjct: 64 NGYELNGRS 72
>gi|156367085|ref|XP_001627250.1| predicted protein [Nematostella vectensis]
gi|156214154|gb|EDO35150.1| predicted protein [Nematostella vectensis]
Length = 259
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 88 SNFSPDL---KLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSV 143
SNF ++ K ++GNL +SVD L F V++ VI D+ TGR RGFGFVT S
Sbjct: 103 SNFDLEMAEYKCYIGNLSYSVDEQALEEKFHGYNVVDVKVITDRETGRPRGFGFVTFGSE 162
Query: 144 EEVEAAAQQFNG 155
+E++ A +F+G
Sbjct: 163 DEMDKAIDKFDG 174
>gi|426241414|ref|XP_004014586.1| PREDICTED: RNA-binding protein 39 isoform 7 [Ovis aries]
Length = 367
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 93 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 152
Query: 152 QFNGY 156
Q NG+
Sbjct: 153 QLNGF 157
>gi|355715684|gb|AES05403.1| RNA binding motif protein 39 [Mustela putorius furo]
Length = 271
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 130 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 189
Query: 152 QFNGY 156
Q NG+
Sbjct: 190 QLNGF 194
>gi|328772428|gb|EGF82466.1| hypothetical protein BATDEDRAFT_86274 [Batrachochytrium
dendrobatidis JAM81]
Length = 586
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
LFVGNLPF + L LF AG+V + I +GRSRGFG VTM++ E+ A Q FN
Sbjct: 282 LFVGNLPFIITWQDLKDLFRQAGDVAVSHIPTDGSGRSRGFGIVTMTTPEDAAKAIQMFN 341
Query: 155 GYV 157
Y+
Sbjct: 342 RYI 344
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAG-NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+ LFVGNL +SV +L LF + G + I +GRSRGFGFVTM++ E+ A ++
Sbjct: 415 ITLFVGNLVYSVIWQELKDLFRSVGIPTKAEIVTSSSGRSRGFGFVTMATQEDANKAIKE 474
Query: 153 FNG 155
NG
Sbjct: 475 LNG 477
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLF-ETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++F+GNLPF++ S L +F +TAG + + GRSRGFG V + E ++ QF
Sbjct: 20 QVFIGNLPFTMQSKDLKDVFNKTAGVTSVKVMSHGNGRSRGFGLVYCDTPEIAQSIITQF 79
Query: 154 NG 155
G
Sbjct: 80 QG 81
>gi|168033888|ref|XP_001769446.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679366|gb|EDQ65815.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 108
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSV 143
DG N KLFVGNL + D L LF G V + ++ +GRSRGFGFVT+SS
Sbjct: 21 DGPN-----KLFVGNLSWRCDEEALETLFSDYGRVLEARIATERDSGRSRGFGFVTLSSE 75
Query: 144 EEVEAAAQQFNG 155
EV AA + +G
Sbjct: 76 TEVNAAIESLDG 87
>gi|410055058|ref|XP_003316934.2| PREDICTED: uncharacterized protein LOC458443 isoform 4 [Pan
troglodytes]
gi|410055062|ref|XP_003953767.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391515|ref|XP_004062118.1| PREDICTED: RNA-binding protein 39 isoform 5 [Gorilla gorilla
gorilla]
gi|426391519|ref|XP_004062120.1| PREDICTED: RNA-binding protein 39 isoform 7 [Gorilla gorilla
gorilla]
gi|119596566|gb|EAW76160.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
gi|119596571|gb|EAW76165.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
Length = 373
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 93 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 152
Query: 152 QFNGY 156
Q NG+
Sbjct: 153 QLNGF 157
>gi|34365067|emb|CAE45890.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 93 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 152
Query: 152 QFNGY 156
Q NG+
Sbjct: 153 QLNGF 157
>gi|46446527|ref|YP_007892.1| nucleic acid-binding protein [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400168|emb|CAF23617.1| probable nucleic acid-binding protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 112
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVGNL + QL FE G V ++ D++TG+S+GFGFV M S + E A ++
Sbjct: 3 KIFVGNLSWKTSEEQLKAHFEAFGKVVSAKIVTDQMTGKSKGFGFVEMESANDAENAIRE 62
Query: 153 FNG 155
NG
Sbjct: 63 LNG 65
>gi|410924411|ref|XP_003975675.1| PREDICTED: cold-inducible RNA-binding protein-like [Takifugu
rubripes]
Length = 170
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLF+G L F + LA F G +E V I DK TGRSRGFGFV SVE+ +
Sbjct: 2 SDEGKLFIGGLSFETNEESLAEAFGKYGTIEKVDVIRDKETGRSRGFGFVKYESVEDAKD 61
Query: 149 AAQQFNG 155
A NG
Sbjct: 62 AMTAMNG 68
>gi|410055060|ref|XP_003953766.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391517|ref|XP_004062119.1| PREDICTED: RNA-binding protein 39 isoform 6 [Gorilla gorilla
gorilla]
gi|20988961|gb|AAH30493.1| Rbm39 protein [Mus musculus]
gi|34364789|emb|CAE45833.1| hypothetical protein [Homo sapiens]
gi|111598490|gb|AAH82607.1| Rbm39 protein [Mus musculus]
gi|119596570|gb|EAW76164.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_d [Homo
sapiens]
gi|149030835|gb|EDL85862.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_g [Rattus
norvegicus]
Length = 367
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 93 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 152
Query: 152 QFNGY 156
Q NG+
Sbjct: 153 QLNGF 157
>gi|380012525|ref|XP_003690330.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like [Apis
florea]
Length = 506
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 245 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPXTGRSKGYGFLTFRNADDAKKALE 304
Query: 152 QFNGY 156
Q NG+
Sbjct: 305 QLNGF 309
>gi|302673016|ref|XP_003026195.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
gi|300099876|gb|EFI91292.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
Length = 218
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+FVG LPF VD+ +L F G++E +V+ D+ TG SRGFG+V ++ E+ + A ++
Sbjct: 5 VFVGGLPFDVDNDRLQQEFAKFGDIESAIVMMDRQTGNSRGFGYVHFATHEQAKKAKEEM 64
Query: 154 NGY 156
+GY
Sbjct: 65 DGY 67
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAG--NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P LFVGNL +S + GLF G NV + + TGR +GFG+V +E + A
Sbjct: 104 PSSTLFVGNLSWSATEDAVWGLFNEYGVKNVRLPT-EFETGRPKGFGYVEFEDIEGAKKA 162
Query: 150 AQQFNG 155
+ G
Sbjct: 163 YEALAG 168
>gi|410899827|ref|XP_003963398.1| PREDICTED: RNA-binding protein 39-like [Takifugu rubripes]
Length = 500
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF++ + E + A +
Sbjct: 229 MRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALE 288
Query: 152 QFNGY 156
Q NG+
Sbjct: 289 QLNGF 293
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLPFS A + F +G V ++ D+ +G+SRGFGFVTM + E+ + A +
Sbjct: 4 RLYVGNLPFSATKASVQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAIEN 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|406605793|emb|CCH42784.1| Polyadenylate-binding protein 1 [Wickerhamomyces ciferrii]
Length = 436
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEE 145
SN ++FV NLPFS++ L +F AG + V D+ GRSRGFG V+ + E+
Sbjct: 237 SNGPKGFEVFVANLPFSINWQALKDIFREAGEITHADVRLDE-GGRSRGFGIVSFKNKED 295
Query: 146 VEAAAQQFNGY 156
V+ A +QFNGY
Sbjct: 296 VDNAIKQFNGY 306
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVT--GRSRGFGFVTMSSVEEVEAAAQQF 153
+FVGNLPF D QL F++ GNV V D VT GR RG G V S EV+ A ++F
Sbjct: 72 IFVGNLPFDCDWTQLKDHFQSIGNV--VRADIVTQNGRPRGMGTVEFGSKSEVDRAIREF 129
Query: 154 N 154
N
Sbjct: 130 N 130
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++V NLPF+ + L LFETAG V + YD TGR G V S E EAA +
Sbjct: 360 IYVDNLPFATSNDDLFELFETAGRVSAAEIKYDP-TGRPAGSAVVKFESEESAEAAINEL 418
Query: 154 NGY 156
N Y
Sbjct: 419 NEY 421
>gi|410216998|gb|JAA05718.1| RNA binding motif protein 38 [Pan troglodytes]
gi|410298138|gb|JAA27669.1| RNA binding motif protein 38 [Pan troglodytes]
Length = 239
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R +A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPLAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTM 140
FE G++E +VI D+ TG+SRG+GFVTM
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTM 82
>gi|347756146|ref|YP_004863709.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
gi|347588663|gb|AEP13192.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
Length = 112
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL+VGNL F S L F AG VE V+ D+ T RSRGFGFV +S E+ A +
Sbjct: 1 MKLYVGNLSFQTTSEDLRDHFSKAGTVESAQVVEDRDTNRSRGFGFVEFTSTEDGNRAIE 60
Query: 152 QFNG 155
F+G
Sbjct: 61 MFHG 64
>gi|209153906|gb|ACI33185.1| RNA-binding protein 24-B [Salmo salar]
Length = 239
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + A L FE G+++ +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 27 KIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMTDRGSAERACKD 86
Query: 153 FNGYVSNKLS 162
N + + S
Sbjct: 87 PNPIIDGRKS 96
>gi|443310281|ref|ZP_21039939.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
gi|442779687|gb|ELR89922.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
Length = 168
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 94 LKLFVGNLPFS-VDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
++L++GNLP V+ L +F G+ V VI D+ TG+ RGFGFVT++ E +
Sbjct: 3 VRLYIGNLPKEEVERQDLQAVFAEEGDSVVTKVIKDRKTGKCRGFGFVTVNDDEHADKII 62
Query: 151 QQFNGYV 157
++FNGY+
Sbjct: 63 EKFNGYL 69
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL +SV + L F+ G V V+YD TGRSRG+GFV S+ E+EAA
Sbjct: 45 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAA 104
Query: 153 FN 154
N
Sbjct: 105 LN 106
>gi|31873732|emb|CAD97833.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 93 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 152
Query: 152 QFNGY 156
Q NG+
Sbjct: 153 QLNGF 157
>gi|124487277|ref|NP_001074894.1| RNA-binding protein 24 [Mus musculus]
gi|354467200|ref|XP_003496058.1| PREDICTED: RNA-binding protein 24-like [Cricetulus griseus]
gi|380877121|sp|D3Z4I3.1|RBM24_MOUSE RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24
Length = 236
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|340379888|ref|XP_003388457.1| PREDICTED: RNA-binding protein 24-like [Amphimedon queenslandica]
Length = 214
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG LP+ + L F G++E +VI+D+VT +S+G+GFVTM E+ E A
Sbjct: 17 KLFVGGLPYHTTNETLYDFFAQFGDIEEAVVIHDRVTSKSKGYGFVTMKHKEDAEKACAN 76
Query: 153 FNGYVSNK 160
N + +
Sbjct: 77 PNPVIDGR 84
>gi|406983427|gb|EKE04629.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 96
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KLF+GNL F L L + G V+ +I D+ TGRS+GFGFV M++ E+ E+ +
Sbjct: 1 MKLFIGNLNFKTSEEDLMELLKEYGEVKSLQIIKDRDTGRSKGFGFVEMATKEQAESVME 60
Query: 152 QFNG 155
NG
Sbjct: 61 NLNG 64
>gi|406917506|gb|EKD56278.1| RNA-binding protein [uncultured bacterium]
Length = 89
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+S S L LF +G V +VI DK +GRS+GFGFVTM E A +
Sbjct: 6 KLYVGNLPYSATSDSLKELFAGSGEVVDAVVISDKFSGRSKGFGFVTMKDDAAAEKAIKD 65
Query: 153 FNG 155
+G
Sbjct: 66 TDG 68
>gi|428318646|ref|YP_007116528.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
gi|428242326|gb|AFZ08112.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
Length = 185
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP +D +L +F G VI D+ TG+ RGFGFVT+ + E+ + +
Sbjct: 3 IRLYVGNLPKELDRQELQEVFAPEGESVTTKVITDRKTGKCRGFGFVTVLTDEQADQVIE 62
Query: 152 QFNGYV 157
++NG +
Sbjct: 63 KYNGLM 68
>gi|47223170|emb|CAG11305.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF++ + E + A +
Sbjct: 244 MRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALE 303
Query: 152 QFNGY 156
Q NG+
Sbjct: 304 QLNGF 308
>gi|149639860|ref|XP_001510485.1| PREDICTED: RNA-binding protein 38-like [Ornithorhynchus anatinus]
Length = 209
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRNYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|119586626|gb|EAW66222.1| RNA binding motif protein 23, isoform CRA_a [Homo sapiens]
Length = 483
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 307 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 366
Query: 152 QFNGY 156
Q NG+
Sbjct: 367 QLNGF 371
>gi|392413321|ref|YP_006449928.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390626457|gb|AFM27664.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 101
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K++VGNL F+ +L G FE G V+ +I D+ T RSRGFGFV MS+ EE A Q
Sbjct: 3 IKIYVGNLSFNTSENELQGFFEPYGAVDSTKIIVDQFTNRSRGFGFVEMSNREEGLRAIQ 62
Query: 152 QFN 154
+ +
Sbjct: 63 ELD 65
>gi|147223339|emb|CAN13253.1| RNA-binding region (RNP1, RRM) containing 1 [Sus scrofa]
Length = 193
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
Query: 153 FNGYVSNK 160
N + +
Sbjct: 95 PNPNIDGR 102
>gi|61098037|ref|NP_001012881.1| RNA-binding protein 24 [Gallus gallus]
gi|53127514|emb|CAG31140.1| hypothetical protein RCJMB04_2l21 [Gallus gallus]
Length = 246
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|147774036|emb|CAN71872.1| hypothetical protein VITISV_038162 [Vitis vinifera]
Length = 272
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L +S D L F G V VI D+ TGRSRGFGFVT +S EE +A Q
Sbjct: 41 KLFIGGLSYSTDDTSLREAFYKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 LDG 103
>gi|358054360|dbj|GAA99286.1| hypothetical protein E5Q_05981 [Mixia osmundae IAM 14324]
Length = 913
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
LFVGNLPF+ L LF AGN+ + GRSRGFG V + EE + A F
Sbjct: 393 HLFVGNLPFNCQWQDLKDLFRAAGNILRADVQLGPDGRSRGFGSVLFAYPEEAQNAMHMF 452
Query: 154 NGY 156
NGY
Sbjct: 453 NGY 455
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+LFVGNLPF V L LF G V + V RS+GFG V ++ + A F
Sbjct: 201 QLFVGNLPFRVRWQDLKDLFRKCGTVLRADVALTVDNRSKGFGSVLFANEADALMAIDVF 260
Query: 154 NGY 156
NG+
Sbjct: 261 NGF 263
>gi|221041852|dbj|BAH12603.1| unnamed protein product [Homo sapiens]
Length = 337
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 93 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 152
Query: 152 QFNGY 156
Q NG+
Sbjct: 153 QLNGF 157
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
KLFV NLP+S + LF G V ++ I + GRSRGF FVTM++ EE +AA +F
Sbjct: 95 KLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQKNGRSRGFAFVTMTTGEEAQAAIDKF 154
Query: 154 N 154
N
Sbjct: 155 N 155
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL++ NL + V + L F T N V++D GRS G+GFV+ ++ EE AA
Sbjct: 195 KLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISA 254
Query: 153 FNG 155
F+G
Sbjct: 255 FSG 257
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
KLFV NLP+S + LF G V ++ I + GRSRGF FVTM++ EE +AA +F
Sbjct: 95 KLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQKNGRSRGFAFVTMTTGEEAQAAIDKF 154
Query: 154 N 154
N
Sbjct: 155 N 155
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL++ NL + V + L F T N V++D GRS G+GFV+ ++ EE AA
Sbjct: 195 KLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISA 254
Query: 153 FNG 155
F+G
Sbjct: 255 FSG 257
>gi|198418763|ref|XP_002120013.1| PREDICTED: similar to RNA binding motif protein 24 [Ciona
intestinalis]
Length = 275
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L F T G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRDYFATFGDIEEAVVITDRQTGKSRGYGFVTMTEKGAAERACKD 71
Query: 153 FN 154
N
Sbjct: 72 PN 73
>gi|444728803|gb|ELW69245.1| putative RNA-binding protein 23 [Tupaia chinensis]
Length = 450
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 251 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 310
Query: 152 QFNGY 156
Q NG+
Sbjct: 311 QLNGF 315
>gi|320162535|ref|YP_004175760.1| RNA-binding domain-containing protein [Anaerolinea thermophila
UNI-1]
gi|319996389|dbj|BAJ65160.1| RNA-binding region [Anaerolinea thermophila UNI-1]
Length = 105
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNLPFS + L F G V VI D+ +G+SRGFGFV M + E EAA Q
Sbjct: 1 MNIYVGNLPFSANEDDLRSAFAAYGTVTSAAVIKDQFSGQSRGFGFVEMPNQAEAEAAIQ 60
Query: 152 QFNG 155
NG
Sbjct: 61 GLNG 64
>gi|195155759|ref|XP_002018768.1| GL25979 [Drosophila persimilis]
gi|194114921|gb|EDW36964.1| GL25979 [Drosophila persimilis]
Length = 289
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F + L G+FE G ++ + I D T RS+G+GF+T + E+ + A +
Sbjct: 29 MRLYVGSLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALE 88
Query: 152 QFNGY 156
Q NG+
Sbjct: 89 QLNGF 93
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
KLFV NLP+S+ + LF G V ++ I + GRSRG+ FVTM S EE +A ++F
Sbjct: 90 KLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKF 149
Query: 154 NGY 156
+ Y
Sbjct: 150 DSY 152
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+V NL + V S L F + N V++D +GRS G+GF + ++ EE EAA
Sbjct: 189 KLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISA 248
Query: 153 FNG 155
+G
Sbjct: 249 LDG 251
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 57 PLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFET 116
P+ P++ RN A + L N P ++L+VG+L F++ L G+FE
Sbjct: 219 PIVVQPTQAERNRAAAQNASTSNSTLQR---GNVGP-MRLYVGSLHFNITEEMLKGIFEP 274
Query: 117 AGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
G ++ + I D T RS+G+GF+T E+ + A +Q NG+
Sbjct: 275 FGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGF 316
>gi|397473313|ref|XP_003808159.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Pan paniscus]
Length = 442
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|334119206|ref|ZP_08493293.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333458677|gb|EGK87294.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 189
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP +D +L +F G VI D+ TG+ RGFGFVT+ + E+ + +
Sbjct: 3 IRLYVGNLPKELDRQELQEVFAPEGESVTTKVITDRKTGKCRGFGFVTVLTDEQADQVIE 62
Query: 152 QFNGYV 157
++NG +
Sbjct: 63 KYNGLM 68
>gi|348503003|ref|XP_003439056.1| PREDICTED: RNA-binding protein 39-like [Oreochromis niloticus]
Length = 498
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF++ + E + A +
Sbjct: 227 MRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALE 286
Query: 152 QFNGY 156
Q NG+
Sbjct: 287 QLNGF 291
>gi|116199747|ref|XP_001225685.1| hypothetical protein CHGG_08029 [Chaetomium globosum CBS 148.51]
gi|88179308|gb|EAQ86776.1| hypothetical protein CHGG_08029 [Chaetomium globosum CBS 148.51]
Length = 105
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
K++VGNL +S D L FE G V +V+ D+ T RSRGFGFVT S+ EE EAA
Sbjct: 5 KVYVGNLSWSTDDMSLRTAFEAYGLVVDSIVMKDRDTNRSRGFGFVTFSTTEEAEAA 61
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 57 PLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFET 116
P+ P++ RN A + L N P ++L+VG+L F++ L G+FE
Sbjct: 207 PIVVQPTQAERNRAAAQNASTSNSTLQR---GNVGP-MRLYVGSLHFNITEEMLKGIFEP 262
Query: 117 AGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
G ++ + I D T RS+G+GF+T E+ + A +Q NG+
Sbjct: 263 FGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGF 304
>gi|196234692|ref|ZP_03133505.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196221240|gb|EDY15797.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 126
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL F L F AG V+ V + DK TGRSRGF FVTM++ +E + A
Sbjct: 4 KLYVGNLSFDTTEVDLQDAFAEAGTVQEVALMQDKFTGRSRGFAFVTMATPDEAQKAISI 63
Query: 153 FNG 155
F+G
Sbjct: 64 FHG 66
>gi|225438475|ref|XP_002278030.1| PREDICTED: RNA-binding protein 39-like [Vitis vinifera]
Length = 542
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 45 ISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFS 104
I++S +H QP+ PS +N+ S+ ++ G + D KL+VGNL F+
Sbjct: 228 IALSGHLLHG-QPVMVKPSEAEKNLVQSNASGAVSGGIA---GPYGAVDRKLYVGNLHFN 283
Query: 105 VDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
+ QL +FE G VE+V D TG+ +GFGFV + +E + AAQ NG
Sbjct: 284 MTELQLRQIFEPFGRVELVQLPLDLETGQCKGFGFVQFAELEHAK-AAQNLNG 335
>gi|321472566|gb|EFX83536.1| hypothetical protein DAPPUDRAFT_194972 [Daphnia pulex]
Length = 366
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 24 SKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFV-RNVAVSSEFDQEEDLL 82
++P S L + + +L PI + QP + +R N+ S F++
Sbjct: 58 AEPESVPLAIALTGQRLCGVPIVV--------QPTQAEKNRLAGSNMPAMSSFNK----- 104
Query: 83 SDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTM 140
G N P ++L+VG+L F++ L +FE G +E ++ D TGRS+G+GF+T
Sbjct: 105 ----GPN-GP-MRLYVGSLHFNITEDMLRSIFEPFGKIEHMQLMIDTETGRSKGYGFITF 158
Query: 141 SSVEEVEAAAQQFNGY 156
+ E+ + A +Q NG+
Sbjct: 159 RNAEDAKKAMEQLNGF 174
>gi|411117469|ref|ZP_11389956.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410713572|gb|EKQ71073.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 151
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP + +L F AG+ +I D+ T + RGFGFVT+ + EE +A +
Sbjct: 3 VRLYVGNLPEDLSRQELEAAFAEAGDSISTKIITDRKTNKCRGFGFVTVKTDEEADAFIE 62
Query: 152 QFNGYV 157
+FNG +
Sbjct: 63 KFNGSI 68
>gi|160899081|ref|YP_001564663.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333914782|ref|YP_004488514.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160364665|gb|ABX36278.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333744982|gb|AEF90159.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 115
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+SV + L F GNV V+ D+ TGRS+GFGFV M+S E +AA
Sbjct: 4 KIYVGNLPYSVTDSSLESNFAEFGNVASAKVMMDRETGRSKGFGFVEMASAEVAQAAITG 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|357635456|ref|ZP_09133334.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|386393392|ref|ZP_10078173.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
gi|357584010|gb|EHJ49343.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|385734270|gb|EIG54468.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
Length = 98
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLPFS + ++ +F G V+ V I D+ TGR RGFGFV M++ E +AA +
Sbjct: 4 KLYVGNLPFSTNEDEIRDMFSAYGEVQSVNLIVDRETGRLRGFGFVEMTT-EGADAAMEA 62
Query: 153 FNG 155
NG
Sbjct: 63 LNG 65
>gi|296082546|emb|CBI21551.3| unnamed protein product [Vitis vinifera]
Length = 504
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 45 ISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFS 104
I++S +H QP+ PS +N+ S+ ++ G + D KL+VGNL F+
Sbjct: 190 IALSGHLLHG-QPVMVKPSEAEKNLVQSNASGAVSGGIA---GPYGAVDRKLYVGNLHFN 245
Query: 105 VDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
+ QL +FE G VE+V D TG+ +GFGFV + +E + AAQ NG
Sbjct: 246 MTELQLRQIFEPFGRVELVQLPLDLETGQCKGFGFVQFAELEHAK-AAQNLNG 297
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 17/128 (13%)
Query: 41 LAKPISISSSF---IHSFQPL-PSSPSRF---------VRNVAVSSEFDQEEDLLSDEDG 87
L PI + SF + S P P SP+ F R + E EE + E+
Sbjct: 31 LPSPIKLRISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSALQEVTLEE---ASEEN 87
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+ + KL++ NLP+S+ + LF G V ++ I + GRSRGF FVTM+S +E
Sbjct: 88 QDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEA 147
Query: 147 EAAAQQFN 154
+AA Q+F+
Sbjct: 148 QAAIQKFD 155
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+V NL + V S L F N V++D GRS G+GFV+ ++ EE + A
Sbjct: 191 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 250
Query: 153 FNG 155
G
Sbjct: 251 LEG 253
>gi|119586634|gb|EAW66230.1| RNA binding motif protein 23, isoform CRA_h [Homo sapiens]
Length = 467
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 291 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 350
Query: 152 QFNGY 156
Q NG+
Sbjct: 351 QLNGF 355
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
K++VGNLP+SV L F G V ++ D+ TGRS+GFGFV MSS E+ ++A
Sbjct: 3 CKIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAIT 62
Query: 152 QFNG 155
NG
Sbjct: 63 GLNG 66
>gi|116734696|ref|NP_001070819.1| probable RNA-binding protein 23 isoform 1 [Homo sapiens]
gi|34925229|sp|Q86U06.1|RBM23_HUMAN RecName: Full=Probable RNA-binding protein 23; AltName:
Full=RNA-binding motif protein 23; AltName:
Full=RNA-binding region-containing protein 4; AltName:
Full=Splicing factor SF2
gi|28071058|emb|CAD61910.1| unnamed protein product [Homo sapiens]
gi|119586629|gb|EAW66225.1| RNA binding motif protein 23, isoform CRA_d [Homo sapiens]
Length = 439
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|224081877|ref|XP_002306512.1| predicted protein [Populus trichocarpa]
gi|222855961|gb|EEE93508.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 90 FSP-DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEV 146
F P D KL+VGNL F++ QL LFE G VE+V D TG+ +GFGFV + +E
Sbjct: 92 FGPVDRKLYVGNLHFNMTEMQLRQLFEPFGTVELVQLPLDLETGQCKGFGFVQFTQLENA 151
Query: 147 EAAAQQFNG 155
+AA NG
Sbjct: 152 KAAQSALNG 160
>gi|332222976|ref|XP_003260645.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Nomascus
leucogenys]
Length = 442
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|239908108|ref|YP_002954849.1| RNA-binding protein [Desulfovibrio magneticus RS-1]
gi|239797974|dbj|BAH76963.1| RNA-binding protein [Desulfovibrio magneticus RS-1]
Length = 97
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLPFS + ++ LF G+V V I D+ TGR RGFGFV M + +AA Q
Sbjct: 4 KLYVGNLPFSTNEDEIRDLFAAYGDVSSVKLIVDRETGRLRGFGFVEMGD-DGADAAMQG 62
Query: 153 FNG 155
NG
Sbjct: 63 LNG 65
>gi|432859465|ref|XP_004069121.1| PREDICTED: RNA-binding protein 38-like [Oryzias latipes]
Length = 131
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + A L FE G+++ +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 27 KIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMTDRGAAERACKD 86
Query: 153 FNGYVSNK 160
N + +
Sbjct: 87 PNPIIDGR 94
>gi|149756178|ref|XP_001494868.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Equus
caballus]
Length = 446
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 266 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 325
Query: 152 QFNGY 156
Q NG+
Sbjct: 326 QLNGF 330
>gi|407940456|ref|YP_006856097.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407898250|gb|AFU47459.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 116
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+SV A L F G V V+ D+ TGRS+GFGFV M++ E +AA +
Sbjct: 4 KIYVGNLPYSVTDATLESNFAEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAIRA 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|383419607|gb|AFH33017.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|257095113|ref|YP_003168754.1| RNP-1 like RNA-binding protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047637|gb|ACV36825.1| RNP-1 like RNA-binding protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 110
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
KL+VGNL ++VD +L LF G V VI D+ TGRS+GFGFV M S +E
Sbjct: 4 KLYVGNLSYTVDQGELTALFAAHGTVASAQVITDRETGRSKGFGFVEMGSDQE 56
>gi|388490330|ref|NP_001253303.1| probable RNA-binding protein 23 [Macaca mulatta]
gi|380814244|gb|AFE78996.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
gi|384947950|gb|AFI37580.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|387539272|gb|AFJ70263.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 439
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|355693134|gb|EHH27737.1| hypothetical protein EGK_18008 [Macaca mulatta]
Length = 441
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|449441097|ref|XP_004138320.1| PREDICTED: uncharacterized protein LOC101218446 [Cucumis sativus]
Length = 232
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + FS D L F G V VI D+ TGRSRGFGFVT +S EE +A Q
Sbjct: 44 KVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
Query: 153 FNG 155
+G
Sbjct: 104 LDG 106
>gi|410465997|ref|ZP_11319150.1| RRM domain-containing RNA-binding protein [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409980981|gb|EKO37622.1| RRM domain-containing RNA-binding protein [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 97
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLPFS + ++ LF G+V V I D+ TGR RGFGFV M + +AA Q
Sbjct: 4 KLYVGNLPFSTNEDEIRDLFAAYGDVTSVKLIVDRETGRLRGFGFVEMGD-DGADAAMQG 62
Query: 153 FNG 155
NG
Sbjct: 63 LNG 65
>gi|373955307|ref|ZP_09615267.1| RNP-1 like RNA-binding protein [Mucilaginibacter paludis DSM 18603]
gi|373891907|gb|EHQ27804.1| RNP-1 like RNA-binding protein [Mucilaginibacter paludis DSM 18603]
Length = 121
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LPF V+ ++L +FE G V V I D+ TGRS+GFGF+ M E + A
Sbjct: 1 MNIFVGSLPFKVEESELKEVFEEFGEVTTVKIITDRETGRSKGFGFIEMPDDEAAQKAIS 60
Query: 152 QFNG 155
+ NG
Sbjct: 61 EVNG 64
>gi|147856399|emb|CAN82467.1| hypothetical protein VITISV_002664 [Vitis vinifera]
Length = 461
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 45 ISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFS 104
I++S +H QP+ PS +N+ S+ ++ G + D KL+VGNL F+
Sbjct: 154 IALSGHLLHG-QPVMVKPSEAEKNLVQSNASGAVSGGIA---GPYGAVDRKLYVGNLHFN 209
Query: 105 VDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
+ QL +FE G VE+V D TG+ +GFGFV + +E + AAQ NG
Sbjct: 210 MTELQLRQIFEPFGRVELVQLPLDLETGQCKGFGFVQFAELEHAK-AAQNLNG 261
>gi|119586630|gb|EAW66226.1| RNA binding motif protein 23, isoform CRA_e [Homo sapiens]
Length = 449
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 273 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 332
Query: 152 QFNGY 156
Q NG+
Sbjct: 333 QLNGF 337
>gi|158429066|pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 27 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 86
Query: 152 QFNGY 156
Q NG+
Sbjct: 87 QLNGF 91
>gi|62122939|ref|NP_001014392.1| RNA binding motif protein 39b [Danio rerio]
gi|61402832|gb|AAH91794.1| RNA binding motif protein 39b [Danio rerio]
Length = 539
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + D TGRS+G+GF++ + E + A +
Sbjct: 264 MRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALE 323
Query: 152 QFNGY 156
Q NG+
Sbjct: 324 QLNGF 328
>gi|335310533|ref|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [Sus scrofa]
Length = 443
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 265 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 324
Query: 152 QFNGY 156
Q NG+
Sbjct: 325 QLNGF 329
>gi|328781105|ref|XP_624668.3| PREDICTED: RNA-binding protein 39-like [Apis mellifera]
Length = 506
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 245 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 304
Query: 152 QFNGY 156
Q NG+
Sbjct: 305 QLNGF 309
>gi|301781268|ref|XP_002926045.1| PREDICTED: probable RNA-binding protein 23-like isoform 1
[Ailuropoda melanoleuca]
Length = 446
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 265 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 324
Query: 152 QFNGY 156
Q NG+
Sbjct: 325 QLNGF 329
>gi|449477140|ref|XP_004154942.1| PREDICTED: uncharacterized LOC101218446 [Cucumis sativus]
Length = 287
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + FS D L F G V VI D+ TGRSRGFGFVT +S EE +A Q
Sbjct: 44 KVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
Query: 153 FNG 155
+G
Sbjct: 104 LDG 106
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 17/128 (13%)
Query: 41 LAKPISISSSF---IHSFQPL-PSSPSRF---------VRNVAVSSEFDQEEDLLSDEDG 87
L PI + SF + S P P SP+ F R + E EE + E+
Sbjct: 25 LPSPIKLRISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSALQEVTLEE---ASEEN 81
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+ + KL++ NLP+S+ + LF G V ++ I + GRSRGF FVTM+S +E
Sbjct: 82 QDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEA 141
Query: 147 EAAAQQFN 154
+AA Q+F+
Sbjct: 142 QAAIQKFD 149
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+V NL + V S L F N V++D GRS G+GFV+ ++ EE + A
Sbjct: 185 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 244
Query: 153 FNG 155
G
Sbjct: 245 LEG 247
>gi|387539270|gb|AFJ70262.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 423
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|116783558|gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG L + VD L F T G+V +I D+ TGRSRGFGFVT +S +E AA +
Sbjct: 40 KVFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGFGFVTFASPDEANAAVEA 99
Query: 153 FNG 155
+G
Sbjct: 100 MDG 102
>gi|308807591|ref|XP_003081106.1| Ps16 protein (ISS) [Ostreococcus tauri]
gi|116059568|emb|CAL55275.1| Ps16 protein (ISS) [Ostreococcus tauri]
Length = 1094
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++ GNL + +D L L G+VE +I D+ TGRSRGFGFVTMS+ E + Q
Sbjct: 1016 RVYFGNLSWGMDQYDLQDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVAQ 1075
Query: 153 FNG 155
NG
Sbjct: 1076 LNG 1078
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLF-ETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+++VGNL + V LA LF E V+ D+ TGRSRGF FV+M++ E+VE A+
Sbjct: 915 RVYVGNLSWGVTDESLAELFSEFDVRDASVMKDRETGRSRGFAFVSMNNEEDVERASAAL 974
Query: 154 NG 155
NG
Sbjct: 975 NG 976
>gi|410961880|ref|XP_003987506.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Felis catus]
Length = 445
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 264 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 323
Query: 152 QFNGY 156
Q NG+
Sbjct: 324 QLNGF 328
>gi|346465875|gb|AEO32782.1| hypothetical protein [Amblyomma maculatum]
Length = 558
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 57 PLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFET 116
P+ P++ RN A + L N P ++L+VG+L F++ L G+FE
Sbjct: 266 PIVVQPTQAERNRAAAQNASTSSSTLQR---GNVGP-MRLYVGSLHFNITEDMLKGIFEP 321
Query: 117 AGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
G ++ + I D T RS+G+GF+T E+ + A +Q NG+
Sbjct: 322 FGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGF 363
>gi|116734694|ref|NP_060577.3| probable RNA-binding protein 23 isoform 2 [Homo sapiens]
gi|18848317|gb|AAH24208.1| RNA binding motif protein 23 [Homo sapiens]
gi|119586627|gb|EAW66223.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
gi|119586633|gb|EAW66229.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
Length = 423
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|90093320|ref|NP_001035014.1| RNA-binding protein 24 [Danio rerio]
gi|89130440|gb|AAI14277.1| Zgc:136803 [Danio rerio]
Length = 142
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDCSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|73962357|ref|XP_537365.2| PREDICTED: probable RNA-binding protein 23 isoform 1 [Canis lupus
familiaris]
Length = 445
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 264 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 323
Query: 152 QFNGY 156
Q NG+
Sbjct: 324 QLNGF 328
>gi|397473311|ref|XP_003808158.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Pan paniscus]
Length = 426
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|81299601|ref|YP_399809.1| RNA-binding region RNP-1 [Synechococcus elongatus PCC 7942]
gi|81168482|gb|ABB56822.1| RNA-binding region RNP-1 [Synechococcus elongatus PCC 7942]
Length = 142
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++++GNLP ++ A+L +F AG V ++ D+ TG+SRGF F T++S E +A ++
Sbjct: 3 VRVYIGNLPRDIEQAELDAVFAEAGEVSAKLVTDRKTGKSRGFAFATVASDELADALIER 62
Query: 153 FNG 155
FNG
Sbjct: 63 FNG 65
>gi|12803481|gb|AAH02566.1| RNA binding motif protein 23 [Homo sapiens]
gi|189055004|dbj|BAG37988.1| unnamed protein product [Homo sapiens]
gi|312151810|gb|ADQ32417.1| RNA binding motif protein 23 [synthetic construct]
Length = 424
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|383419779|gb|AFH33103.1| RNA-binding protein 24 isoform 1 [Macaca mulatta]
Length = 98
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FN 154
N
Sbjct: 72 PN 73
>gi|149756180|ref|XP_001494897.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Equus
caballus]
Length = 430
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|384947948|gb|AFI37579.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|164659450|ref|XP_001730849.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
gi|159104747|gb|EDP43635.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
Length = 549
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAA 149
P+ +L+VGNL + + S + +FE G+++ V Y+ +TG+S+GF FV +V E + A
Sbjct: 312 PEARLYVGNLHYDITSQHVRVVFEPFGHLDEVEVCYNHMTGKSKGFAFVQFRNVHEAKQA 371
Query: 150 AQQFNGY 156
+Q NG+
Sbjct: 372 MEQLNGF 378
>gi|380814242|gb|AFE78995.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
gi|383419605|gb|AFH33016.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|426376372|ref|XP_004054975.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Gorilla
gorilla gorilla]
Length = 437
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|356519721|ref|XP_003528518.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 137
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L +SVD L F + G+V ++YDK +GRSRGFGFV S+ ++ + A
Sbjct: 39 KLFVGGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDA 98
Query: 153 FNG 155
+G
Sbjct: 99 MDG 101
>gi|355778434|gb|EHH63470.1| hypothetical protein EGM_16442, partial [Macaca fascicularis]
Length = 366
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 188 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 247
Query: 152 QFNGY 156
Q NG+
Sbjct: 248 QLNGF 252
>gi|7022544|dbj|BAA91638.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 229 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 288
Query: 152 QFNGY 156
Q NG+
Sbjct: 289 QLNGF 293
>gi|332222974|ref|XP_003260644.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Nomascus
leucogenys]
Length = 426
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|261858408|dbj|BAI45726.1| RNA binding motif protein 23 [synthetic construct]
Length = 406
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 229 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 288
Query: 152 QFNGY 156
Q NG+
Sbjct: 289 QLNGF 293
>gi|410961882|ref|XP_003987507.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Felis catus]
Length = 429
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 248 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 307
Query: 152 QFNGY 156
Q NG+
Sbjct: 308 QLNGF 312
>gi|301781270|ref|XP_002926046.1| PREDICTED: probable RNA-binding protein 23-like isoform 2
[Ailuropoda melanoleuca]
Length = 430
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 249 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 308
Query: 152 QFNGY 156
Q NG+
Sbjct: 309 QLNGF 313
>gi|395503034|ref|XP_003755878.1| PREDICTED: probable RNA-binding protein 23 [Sarcophilus harrisii]
Length = 451
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+GFGF+T S E A +
Sbjct: 275 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALE 334
Query: 152 QFNGY 156
Q NG+
Sbjct: 335 QLNGF 339
>gi|126277396|ref|XP_001369125.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Monodelphis
domestica]
Length = 449
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+GFGF+T S E A +
Sbjct: 273 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALE 332
Query: 152 QFNGY 156
Q NG+
Sbjct: 333 QLNGF 337
>gi|116734698|ref|NP_001070820.1| probable RNA-binding protein 23 isoform 3 [Homo sapiens]
gi|119586628|gb|EAW66224.1| RNA binding motif protein 23, isoform CRA_c [Homo sapiens]
Length = 405
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 229 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 288
Query: 152 QFNGY 156
Q NG+
Sbjct: 289 QLNGF 293
>gi|374583239|ref|ZP_09656333.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
youngiae DSM 17734]
gi|374419321|gb|EHQ91756.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
youngiae DSM 17734]
Length = 83
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 7/64 (10%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA--AQ 151
L+VGNLP++ + +L F G VE +I D+ TGRSRGFGF+ VEE++AA A+
Sbjct: 5 LYVGNLPWNTTAEELGEFFSAYGQVESSRIITDRETGRSRGFGFI---EVEEMDAARMAE 61
Query: 152 QFNG 155
+ NG
Sbjct: 62 ELNG 65
>gi|149756182|ref|XP_001494921.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Equus
caballus]
Length = 412
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 232 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 291
Query: 152 QFNGY 156
Q NG+
Sbjct: 292 QLNGF 296
>gi|73962355|ref|XP_848788.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Canis lupus
familiaris]
Length = 429
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 248 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 307
Query: 152 QFNGY 156
Q NG+
Sbjct: 308 QLNGF 312
>gi|395859409|ref|XP_003802032.1| PREDICTED: probable RNA-binding protein 23 [Otolemur garnettii]
Length = 449
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ LFVG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 268 MHLFVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 327
Query: 152 QFNGY 156
Q NG+
Sbjct: 328 QLNGF 332
>gi|115454539|ref|NP_001050870.1| Os03g0670700 [Oryza sativa Japonica Group]
gi|108710321|gb|ABF98116.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|113549341|dbj|BAF12784.1| Os03g0670700 [Oryza sativa Japonica Group]
Length = 196
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|397473315|ref|XP_003808160.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Pan paniscus]
Length = 408
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 229 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 288
Query: 152 QFNGY 156
Q NG+
Sbjct: 289 QLNGF 293
>gi|301624539|ref|XP_002941556.1| PREDICTED: RNA-binding protein 39 [Xenopus (Silurana) tropicalis]
Length = 420
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + + TGRS+GFGF+T + E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|396471623|ref|XP_003838913.1| hypothetical protein LEMA_P025860.1 [Leptosphaeria maculans JN3]
gi|312215482|emb|CBX95434.1| hypothetical protein LEMA_P025860.1 [Leptosphaeria maculans JN3]
Length = 164
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L + D L FE G VE +V+ D+ TGRSRGFGFV ++ E +AA Q
Sbjct: 3 KLFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYANDAEADAAMQA 62
Query: 153 FN 154
N
Sbjct: 63 LN 64
>gi|159163863|pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 19 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78
Query: 153 FN 154
N
Sbjct: 79 PN 80
>gi|296214508|ref|XP_002753659.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Callithrix
jacchus]
Length = 439
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A
Sbjct: 262 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRAMD 321
Query: 152 QFNGY 156
Q NG+
Sbjct: 322 QLNGF 326
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
KLFV NLP+S+ + LF G V ++ I + GRSRG+ FVTM S EE +A ++F
Sbjct: 60 KLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKF 119
Query: 154 NGY 156
+ Y
Sbjct: 120 DSY 122
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+V NL + V S L F + N V++D +GRS G+GF + ++ EE EAA
Sbjct: 159 KLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISA 218
Query: 153 FNG 155
+G
Sbjct: 219 LDG 221
>gi|365875472|ref|ZP_09415000.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442588736|ref|ZP_21007546.1| RNA-binding protein [Elizabethkingia anophelis R26]
gi|365756731|gb|EHM98642.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442561494|gb|ELR78719.1| RNA-binding protein [Elizabethkingia anophelis R26]
Length = 93
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +F+ N+ +SV +QL LF + G ++ +I D+ TGRSRGFGFV M + +E A +
Sbjct: 1 MNIFISNINYSVKESQLEELFASYGAIQSAKIIMDRETGRSRGFGFVEMPNNDEANTAIE 60
Query: 152 QFNG 155
NG
Sbjct: 61 SLNG 64
>gi|307195359|gb|EFN77277.1| RNA-binding protein 39 [Harpegnathos saltator]
Length = 370
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 109 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 168
Query: 152 QFNGY 156
Q NG+
Sbjct: 169 QLNGF 173
>gi|431907193|gb|ELK11259.1| Putative RNA-binding protein 23 [Pteropus alecto]
Length = 914
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 243 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSESECARRALE 302
Query: 152 QFNGY 156
Q NG+
Sbjct: 303 QLNGF 307
>gi|426376370|ref|XP_004054974.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Gorilla
gorilla gorilla]
Length = 421
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|260892116|ref|YP_003238213.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
gi|260864257|gb|ACX51363.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
Length = 87
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLP+S + +LA +F G V +I D+ TGRSRGFGFV + E+ EA +
Sbjct: 5 LYVGNLPWSTQAEELAEIFSAYGEVLSSRIIVDRQTGRSRGFGFVEVRD-EDAEAMIRAL 63
Query: 154 NG 155
NG
Sbjct: 64 NG 65
>gi|428185150|gb|EKX54003.1| hypothetical protein GUITHDRAFT_132430 [Guillardia theta CCMP2712]
Length = 162
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D KLFV +PF++ S L FE G VE V+ D+ TGRSRGF F+T SS E A
Sbjct: 58 DKKLFVSGIPFALSSEDLRETFEKFGPVEDSYVVKDRETGRSRGFAFITFSSKEAASQAC 117
Query: 151 QQFN 154
N
Sbjct: 118 SALN 121
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG--NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNLP+S+D L LF G N V+ D+ +GRSRGF FV +S+ EE A
Sbjct: 205 RLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEAMAN 264
Query: 153 FNG 155
+G
Sbjct: 265 LDG 267
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL +S D L F G V+ V+ D+ +GRSRGF FVTM+S + E A +
Sbjct: 91 KLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMASPDAAEKARRG 150
Query: 153 FNG 155
+G
Sbjct: 151 LDG 153
>gi|82233813|sp|Q5ZJX4.1|RBM38_CHICK RecName: Full=RNA-binding protein 38; AltName: Full=RNA-binding
motif protein 38
gi|53133180|emb|CAG31969.1| hypothetical protein RCJMB04_14l15 [Gallus gallus]
Length = 215
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|281343373|gb|EFB18957.1| hypothetical protein PANDA_015655 [Ailuropoda melanoleuca]
Length = 369
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 188 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 247
Query: 152 QFNGY 156
Q NG+
Sbjct: 248 QLNGF 252
>gi|197102126|ref|NP_001124751.1| probable RNA-binding protein 23 [Pongo abelii]
gi|55725769|emb|CAH89665.1| hypothetical protein [Pongo abelii]
Length = 423
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|426198367|gb|EKV48293.1| hypothetical protein AGABI2DRAFT_142473 [Agaricus bisporus var.
bisporus H97]
Length = 559
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
L +FVG L +SVD+ +LA F G V V D+ TGRSRGFG+V S+ + VE A
Sbjct: 308 LSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTGRSRGFGYVHFSTADAVEKAL- 366
Query: 152 QFNGY 156
+ NGY
Sbjct: 367 KMNGY 371
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY---DKVTGRSRGFGFVTMSSVEEVEA 148
P LF+GNLPFS+ L F+ G+ I D+ TG+ +GFG+V + +VE+ +
Sbjct: 406 PSSTLFIGNLPFSITEDGLWSYFD--GHSVKTIRLPTDRETGQLKGFGYVELENVEDAKK 463
Query: 149 AAQQFNG 155
A + +G
Sbjct: 464 AFEAISG 470
>gi|353243308|emb|CCA74865.1| related to heterogeneous nuclear ribonucleoprotein [Piriformospora
indica DSM 11827]
Length = 475
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEE 145
+N P ++ V NLP+S + L LFET G+VE+ ++YD RS+G G V + VEE
Sbjct: 380 ANLPPSQQIMVRNLPWSTANEDLVELFETTGHVELAEILYDGT--RSKGSGVVQFTHVEE 437
Query: 146 VEAAAQQFNGYV 157
E A +F+GY
Sbjct: 438 AETAIAKFSGYT 449
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN-VEMVIYDKVTGRSRGFGFVTMSSVE 144
+G +P +L+VGNLP+ L LF AGN V I + GR++G G V + +
Sbjct: 224 NGGAANPGNQLYVGNLPYQAGWQDLKDLFRNAGNIVRADINIGIDGRAKGSGTVVFETAK 283
Query: 145 EVEAAAQQFNGY 156
+ ++A ++GY
Sbjct: 284 DAQSAISMYHGY 295
>gi|90409697|ref|ZP_01217714.1| hypothetical protein P3TCK_03001 [Photobacterium profundum 3TCK]
gi|90329050|gb|EAS45307.1| hypothetical protein P3TCK_03001 [Photobacterium profundum 3TCK]
Length = 97
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL + NL A+L +FET G V+ ++ DK TG S+GF FV M + E +AA Q
Sbjct: 1 MKLLIRNLDRITTEAELQAMFETHGKVQSCSLVMDKETGASKGFAFVEMPKIGEAKAAMQ 60
Query: 152 QFNG--YVSNKLSPKK 165
NG NK+ KK
Sbjct: 61 ALNGLKVAGNKIRVKK 76
>gi|2331133|gb|AAB66885.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 161
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D + FVG L ++ D+ L F T G + +I D+ TGRSRGFGFVT SS + + A
Sbjct: 7 DYRCFVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAI 66
Query: 151 QQFNG 155
+ NG
Sbjct: 67 EGMNG 71
>gi|301781272|ref|XP_002926047.1| PREDICTED: probable RNA-binding protein 23-like isoform 3
[Ailuropoda melanoleuca]
Length = 412
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 231 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 290
Query: 152 QFNGY 156
Q NG+
Sbjct: 291 QLNGF 295
>gi|299756715|ref|XP_002912240.1| hypothetical protein CC1G_13772 [Coprinopsis cinerea okayama7#130]
gi|298411800|gb|EFI28746.1| hypothetical protein CC1G_13772 [Coprinopsis cinerea okayama7#130]
Length = 241
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 76 DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSR 133
D+E S+ G N P L V L VDS L F G V+ V+YD T SR
Sbjct: 69 DRERASRSENGGQN--PGNNLHVSGLSHRVDSRDLETAFAKIGRVQKASVMYDPHTRESR 126
Query: 134 GFGFVTMSSVEEVEAAAQQFNG 155
GFGFVTM + EE EAA NG
Sbjct: 127 GFGFVTMETTEEAEAAISSLNG 148
>gi|291233573|ref|XP_002736726.1| PREDICTED: RNA-binding protein 38-like [Saccoglossus kowalevskii]
Length = 219
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG LP+S L F+ G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 15 KLFVGGLPYSTTDKSLREYFDNFGEIEEAVVITDRQTGKSRGYGFVTMADRPAAERACKD 74
Query: 153 FNGYVSNK 160
N + +
Sbjct: 75 PNPIIDGR 82
>gi|126277398|ref|XP_001369153.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Monodelphis
domestica]
Length = 433
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+GFGF+T S E A +
Sbjct: 257 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALE 316
Query: 152 QFNGY 156
Q NG+
Sbjct: 317 QLNGF 321
>gi|344289554|ref|XP_003416507.1| PREDICTED: RNA-binding protein 24-like [Loxodonta africana]
Length = 237
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|298248948|ref|ZP_06972752.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297546952|gb|EFH80819.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 96
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNL + + +L F G V+ V + ++ TGRS+GFGFV M + ++ AA +
Sbjct: 1 MRLYVGNLSYRITDQELGDFFAQIGRVQRVRVVTERETGRSKGFGFVDMLNEQDARAAIE 60
Query: 152 QFNG 155
Q NG
Sbjct: 61 QLNG 64
>gi|297290126|ref|XP_002808418.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 24-like [Macaca
mulatta]
Length = 239
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FN 154
N
Sbjct: 72 PN 73
>gi|54303611|ref|YP_133604.1| hypothetical protein PBPRB1959 [Photobacterium profundum SS9]
gi|46917042|emb|CAG23804.1| hypothetical protein PBPRB1959 [Photobacterium profundum SS9]
Length = 97
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL + NL A+L +FET G V+ ++ DK TG S+GF FV M + E +AA Q
Sbjct: 1 MKLLIRNLDRITTEAELQAMFETHGKVQSCSLVMDKETGASKGFAFVEMPKIGEAKAAMQ 60
Query: 152 QFNG--YVSNKLSPKK 165
NG NK+ KK
Sbjct: 61 ALNGLKVAGNKIRVKK 76
>gi|291403541|ref|XP_002718109.1| PREDICTED: RNA binding motif protein 23 isoform 2 [Oryctolagus
cuniculus]
Length = 444
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
L+L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 265 LRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECGRRALE 324
Query: 152 QFNGY 156
Q NG+
Sbjct: 325 QLNGF 329
>gi|224045660|ref|XP_002188575.1| PREDICTED: RNA-binding protein 24 isoform 1 [Taeniopygia guttata]
Length = 226
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|428313428|ref|YP_007124405.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428255040|gb|AFZ20999.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 93
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNL + V S L+ +F G V+ V D+ TGRSRGFGFV M + E +AA Q
Sbjct: 1 MSIYVGNLSYQVTSEDLSSVFAEYGTVKRVQIPTDRETGRSRGFGFVEMETEAEEDAAIQ 60
Query: 152 QFNG 155
+ +G
Sbjct: 61 ELDG 64
>gi|395863336|ref|XP_003803852.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Otolemur
garnettii]
gi|395863340|ref|XP_003803854.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Otolemur
garnettii]
Length = 514
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L ++ A L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 235 MRLYVGSLHLNITEAMLRGIFEPFGRLESIQLMKDSETGRSKGYGFITFSDSECAKKALE 294
Query: 152 QFNG 155
Q NG
Sbjct: 295 QLNG 298
>gi|45239008|gb|AAS55633.1| unknown [Homo sapiens]
Length = 236
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|357457429|ref|XP_003598995.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355488043|gb|AES69246.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 447
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEA 148
+P+ KLFVG + ++ D L+ F G V +I D+ +GRS+GFGFVT ++VEE +
Sbjct: 41 TPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASS 100
Query: 149 AAQQFNG 155
A Q +G
Sbjct: 101 AIQALDG 107
>gi|291403543|ref|XP_002718110.1| PREDICTED: RNA binding motif protein 23 isoform 3 [Oryctolagus
cuniculus]
Length = 428
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
L+L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 249 LRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECGRRALE 308
Query: 152 QFNGY 156
Q NG+
Sbjct: 309 QLNGF 313
>gi|126302793|ref|XP_001368885.1| PREDICTED: RNA-binding protein 38-like [Monodelphis domestica]
Length = 234
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 31 KIFVGGLPYHTTDSSLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 90
Query: 153 FNGYVSNK 160
N + +
Sbjct: 91 PNPIIDGR 98
>gi|395830517|ref|XP_003788370.1| PREDICTED: RNA-binding protein 24 [Otolemur garnettii]
Length = 236
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|147906083|ref|NP_001079578.1| RNA-binding protein 24-B [Xenopus laevis]
gi|82247547|sp|Q9I8B3.1|RB24B_XENLA RecName: Full=RNA-binding protein 24-B; AltName: Full=MTR-1a;
AltName: Full=RNA-binding motif protein 24-B
gi|8920429|emb|CAB96420.1| hypothetical protein [Xenopus laevis]
gi|27924271|gb|AAH44956.1| MGC52530 protein [Xenopus laevis]
Length = 224
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|299751777|ref|XP_001830476.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298409530|gb|EAU91356.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 142
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
K++VGNL ++ L F GNV +V+ D+ TGRSRGFGFVT S+ EE +AA
Sbjct: 4 KVYVGNLSWNTTDDSLRQAFSQYGNVLDSIVMRDRDTGRSRGFGFVTYSATEEADAA 60
>gi|294896462|ref|XP_002775569.1| RNA recognition motif containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239881792|gb|EER07385.1| RNA recognition motif containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 361
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+FVGN+P+ VD QL +F T G V +++DKVTGR +G+GF + E AA +
Sbjct: 11 VFVGNVPYDVDEEQLKSIFSTVGPVVSFRLMHDKVTGRPKGYGFCEYADQETAYAAMRNL 70
Query: 154 N 154
N
Sbjct: 71 N 71
>gi|410961884|ref|XP_003987508.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Felis catus]
Length = 411
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 230 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 289
Query: 152 QFNGY 156
Q NG+
Sbjct: 290 QLNGF 294
>gi|147907395|ref|NP_001080995.1| RNA-binding protein 24-A [Xenopus laevis]
gi|82236599|sp|Q6GQD3.1|RB24A_XENLA RecName: Full=RNA-binding protein 24-A; AltName: Full=RNA-binding
motif protein 24-A; AltName: Full=RRM domain-containing
protein SEB-4; Short=SEB-4; AltName: Full=Xseb-4
gi|49114954|gb|AAH72812.1| Seb4-A-prov protein [Xenopus laevis]
Length = 225
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|395863338|ref|XP_003803853.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
gi|395863342|ref|XP_003803855.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
Length = 487
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L ++ A L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 208 MRLYVGSLHLNITEAMLRGIFEPFGRLESIQLMKDSETGRSKGYGFITFSDSECAKKALE 267
Query: 152 QFNG 155
Q NG
Sbjct: 268 QLNG 271
>gi|348566023|ref|XP_003468802.1| PREDICTED: RNA-binding protein 24-like [Cavia porcellus]
Length = 236
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|325290560|ref|YP_004266741.1| RNP-1 like RNA-binding protein [Syntrophobotulus glycolicus DSM
8271]
gi|324965961|gb|ADY56740.1| RNP-1 like RNA-binding protein [Syntrophobotulus glycolicus DSM
8271]
Length = 84
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLP++ S +L F GNV +I D+ TGRSRGFGFV ++ E+ E A++
Sbjct: 5 LYVGNLPWATSSEELTEYFAEFGNVIGSRIITDRETGRSRGFGFVEVAD-EDAERLAEEL 63
Query: 154 NG 155
NG
Sbjct: 64 NG 65
>gi|32489985|emb|CAE05015.1| OSJNBa0044M19.2 [Oryza sativa Japonica Group]
Length = 650
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ L++G LP ++D + L GLF G + M VI D++TG+S+G+GFV S V + AA
Sbjct: 306 ETNLYIGYLPPTLDDSGLIGLFSQFGEIVMAKVIRDRITGQSKGYGFVKYSDVSQANAAI 365
Query: 151 QQFNGY 156
NGY
Sbjct: 366 AAMNGY 371
>gi|221139802|ref|NP_001137414.1| RNA-binding protein 24 isoform 1 [Homo sapiens]
gi|297677216|ref|XP_002816502.1| PREDICTED: RNA-binding protein 24 [Pongo abelii]
gi|332822992|ref|XP_001175216.2| PREDICTED: RNA-binding protein 24 isoform 1 [Pan troglodytes]
gi|402865906|ref|XP_003897142.1| PREDICTED: RNA-binding protein 24 [Papio anubis]
gi|403270855|ref|XP_003927374.1| PREDICTED: RNA-binding protein 24 [Saimiri boliviensis boliviensis]
gi|74761312|sp|Q9BX46.1|RBM24_HUMAN RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24; AltName: Full=RNA-binding
region-containing protein 6
gi|119575782|gb|EAW55378.1| RNA binding motif protein 24, isoform CRA_a [Homo sapiens]
gi|158259565|dbj|BAF85741.1| unnamed protein product [Homo sapiens]
gi|164691129|dbj|BAF98747.1| unnamed protein product [Homo sapiens]
gi|261861082|dbj|BAI47063.1| RNA binding motif protein 24 [synthetic construct]
gi|410210220|gb|JAA02329.1| RNA binding motif protein 24 [Pan troglodytes]
gi|410346986|gb|JAA40725.1| RNA binding motif protein 24 [Pan troglodytes]
gi|431913274|gb|ELK14952.1| RNA-binding protein 24 [Pteropus alecto]
Length = 236
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|426376374|ref|XP_004054976.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Gorilla
gorilla gorilla]
Length = 403
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 229 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 288
Query: 152 QFNGY 156
Q NG+
Sbjct: 289 QLNGF 293
>gi|409079870|gb|EKM80231.1| hypothetical protein AGABI1DRAFT_73218 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 568
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
L +FVG L +SVD+ +LA F G V V D+ TGRSRGFG+V S+ + VE A
Sbjct: 308 LSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTGRSRGFGYVHFSTADAVEKAL- 366
Query: 152 QFNGY 156
+ NGY
Sbjct: 367 KMNGY 371
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY---DKVTGRSRGFGFVTMSSVEEVEA 148
P LF+GNLPFS+ L F+ G+ I D+ TG+ +GFG+V + +VE+ +
Sbjct: 406 PSSTLFIGNLPFSITEDGLWSYFD--GHSVKTIRLPTDRETGQLKGFGYVELENVEDAKK 463
Query: 149 AAQQFNG 155
A + +G
Sbjct: 464 AFEAISG 470
>gi|405963791|gb|EKC29337.1| RNA-binding protein 39 [Crassostrea gigas]
Length = 557
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEE 145
N P ++L+VG+L F++ L G+FE G ++ + I D T RS+G+GF+T E+
Sbjct: 255 GNIGP-MRLYVGSLHFNITEEMLRGIFEPFGKIDDIKLIRDHETNRSQGYGFITFHDSED 313
Query: 146 VEAAAQQFNGY 156
+ A +Q NG+
Sbjct: 314 AKKALEQLNGF 324
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
LFVGNL ++VD A LA F+ G V VI D+ +GRS+GFG+V ++ EE E A +
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 154 NG 155
G
Sbjct: 301 QG 302
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 87 GSNFSPDLK-LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSV 143
G SP+ LFVGNLPF D + F V+ + ++ +GR +GFG+VT +SV
Sbjct: 334 GDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSV 393
Query: 144 EEVEAAAQQFNGYVSN 159
E+ ++A +Q NG N
Sbjct: 394 EDAKSAFEQLNGQSIN 409
>gi|441623518|ref|XP_003263507.2| PREDICTED: RNA-binding protein 24, partial [Nomascus leucogenys]
Length = 196
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|194038046|ref|XP_001925482.1| PREDICTED: RNA-binding protein 24-like [Sus scrofa]
Length = 236
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|126277401|ref|XP_001369188.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Monodelphis
domestica]
Length = 415
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+GFGF+T S E A +
Sbjct: 239 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALE 298
Query: 152 QFNGY 156
Q NG+
Sbjct: 299 QLNGF 303
>gi|387915720|gb|AFK11469.1| RNA-binding protein 38 [Callorhinchus milii]
Length = 232
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+S + L F+ G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 30 KIFVGGLPYSTTHSSLRSYFQGFGDIEEAVVINDRQTGKSRGYGFVTMAEKSAAERACKD 89
Query: 153 FNGYVSNK 160
N + +
Sbjct: 90 PNPIIDGR 97
>gi|406896127|gb|EKD40506.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 92
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL+VGNL + + + L +FE G V +I DK +G+S+GFGFV M S E ++A +
Sbjct: 1 MKLYVGNLSYEISESDLKQMFEEFGKVGSASIIMDKYSGQSKGFGFVEMDSQTEAQSAME 60
Query: 152 QFNG 155
NG
Sbjct: 61 ALNG 64
>gi|403173301|ref|XP_003332385.2| hypothetical protein PGTG_13770 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170218|gb|EFP87966.2| hypothetical protein PGTG_13770 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 965
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
LFVGNLPF++ L LF AGN+ + GRSRGFG V ++ E+ A + ++
Sbjct: 470 LFVGNLPFNLQWQDLKDLFRQAGNILRADVATTAEGRSRGFGTVLFATAEDAMKALEMYD 529
Query: 155 GY 156
GY
Sbjct: 530 GY 531
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+LF+ NLPF V L LF AG V + RS+GFG V ++ + A + +
Sbjct: 35 QLFINNLPFRVRWQDLKDLFRKAGTVLRADVSLTPDNRSKGFGTVLFANRNDAFKAIEIY 94
Query: 154 NGY 156
NG+
Sbjct: 95 NGF 97
>gi|345804022|ref|XP_003435135.1| PREDICTED: probable RNA-binding protein 23 [Canis lupus familiaris]
Length = 411
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 230 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 289
Query: 152 QFNGY 156
Q NG+
Sbjct: 290 QLNGF 294
>gi|45360685|ref|NP_989016.1| RNA-binding protein 24 [Xenopus (Silurana) tropicalis]
gi|82237576|sp|Q6P8A7.1|RBM24_XENTR RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24
gi|38174185|gb|AAH61322.1| RNA binding motif protein 24 [Xenopus (Silurana) tropicalis]
Length = 226
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|325179817|emb|CCA14220.1| RNA binding protein putative [Albugo laibachii Nc14]
Length = 360
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 87 GSNFSPDLK-LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVE 144
G + S D+K ++VGNLP+ S L LF++AG+VE + + GRSRGFG V S
Sbjct: 274 GHSHSSDVKQVYVGNLPWDTTSRNLENLFQSAGDVERAEVVEFPDGRSRGFGIVKFKSSS 333
Query: 145 EVEAAAQQFNGYVSN 159
E + A + NG N
Sbjct: 334 EAQCAIDELNGTEHN 348
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
+++VGNL + V L +AG+VE + +V GRS+G G VT ++ E + A + N
Sbjct: 71 RVYVGNLSWKVKWQDLKDHMRSAGDVEHAVIMEVGGRSKGCGIVTYATESEAQNAIETLN 130
>gi|449493337|ref|XP_004175378.1| PREDICTED: RNA-binding protein 24 isoform 2 [Taeniopygia guttata]
Length = 184
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|405963050|gb|EKC28659.1| RNA-binding protein 24-A [Crassostrea gigas]
Length = 223
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L F+ G +E +VI D+ TG+SRG+GFVTM++ E E A +
Sbjct: 14 KIFVGGLPYHTTDKSLREFFDKFGEIEEAVVITDRQTGKSRGYGFVTMANREAAERACKD 73
Query: 153 FNGYVSNK 160
N + +
Sbjct: 74 PNPIIDGR 81
>gi|71407975|ref|XP_806419.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70870163|gb|EAN84568.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 171
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLFVG LPF D +L LF GNVE + I + RS+G FVT S+VEE + A
Sbjct: 54 KLFVGQLPFETDELRLYNLFSAYGNVEHIHILRDLKNRSKGAAFVTYSNVEEADTA 109
>gi|291403539|ref|XP_002718108.1| PREDICTED: RNA binding motif protein 23 isoform 1 [Oryctolagus
cuniculus]
Length = 410
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
L+L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 231 LRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECGRRALE 290
Query: 152 QFNGY 156
Q NG+
Sbjct: 291 QLNGF 295
>gi|124021001|sp|Q5ZMA3.2|RBM24_CHICK RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24
Length = 225
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|15226983|ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 308
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 16/143 (11%)
Query: 25 KPTSFSLLSSSSSHKLLAKPISISSSF--IHSFQPLPSSPSRFV--------RNVAVSSE 74
KP FS SSS KL A + I S+ + S + + R V + + E
Sbjct: 21 KPYLFS--KRSSSLKLTALSLRIPSNLSPVFSLRSGSDNSRRLVSVLCSVAEKETSADEE 78
Query: 75 FDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSR 133
QEE E+ N + KLFV NLP+S+ ++ LF G V V I + G++R
Sbjct: 79 TSQEEKT---EETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNR 135
Query: 134 GFGFVTMSSVEEVEAAAQQFNGY 156
GF FVTM+S EE +AA +F+ +
Sbjct: 136 GFAFVTMASGEEAQAAIDKFDTF 158
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE----MVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
KL+V NL + S L LF TA + V++ GRS G+GFV+ ++ EE E A
Sbjct: 195 KLYVSNLAWKARSTHLRELF-TAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAI 253
Query: 151 QQFNG 155
+ NG
Sbjct: 254 TKLNG 258
>gi|407790590|ref|ZP_11137683.1| RNA recognition motif-containing protein [Gallaecimonas xiamenensis
3-C-1]
gi|407203713|gb|EKE73698.1| RNA recognition motif-containing protein [Gallaecimonas xiamenensis
3-C-1]
Length = 88
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ LFV NL F V++ LA LF G+V+ ++ DK TGRSRGFGFV M+ E A +
Sbjct: 1 MNLFVSNLSFRVEADALAQLFGQYGDVQRAHIVKDKETGRSRGFGFVEMADKATGENAIK 60
Query: 152 QFNG-------YVSNKLSPKKK 166
NG V N+ P+++
Sbjct: 61 ALNGQDFEGRPLVVNEARPREQ 82
>gi|294939913|ref|XP_002782599.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239894422|gb|EER14394.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 197
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
K+FVG LP S D A+L F G V +V+YD+ TGR RGFG+V SS + EAA
Sbjct: 106 CKVFVGGLPNSCDQARLNDHFSRYGTVAEALVMYDRDTGRHRGFGYVIYSSPADAEAA 163
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 110 LAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+ G F G VE +V++D+ TGRSRGFGFV S V ++E
Sbjct: 1 MDGYFSQFGPVEHSVVMFDRNTGRSRGFGFVVYSQVTDMETC 42
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEE 145
N P ++L+VG+L F++ L G+FE G ++ + I D T RS+G+GF+T E+
Sbjct: 140 GNIGP-MRLYVGSLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSED 198
Query: 146 VEAAAQQFNGY 156
+ A +Q NG+
Sbjct: 199 AKKALEQLNGF 209
>gi|330920718|ref|XP_003299119.1| hypothetical protein PTT_10054 [Pyrenophora teres f. teres 0-1]
gi|311327336|gb|EFQ92795.1| hypothetical protein PTT_10054 [Pyrenophora teres f. teres 0-1]
Length = 171
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L + D L FE G VE +V+ D+ TGRSRGFGFV + E +AA Q
Sbjct: 3 KLFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYAQDTEADAAMQA 62
Query: 153 FN 154
N
Sbjct: 63 MN 64
>gi|189203945|ref|XP_001938308.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985407|gb|EDU50895.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 168
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L + D L FE G VE +V+ D+ TGRSRGFGFV + E +AA Q
Sbjct: 3 KLFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYAQDTEADAAMQA 62
Query: 153 FN 154
N
Sbjct: 63 MN 64
>gi|255075095|ref|XP_002501222.1| predicted protein [Micromonas sp. RCC299]
gi|226516486|gb|ACO62480.1| predicted protein [Micromonas sp. RCC299]
Length = 199
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + +D L L G VE +I D+ T RSRGFGFVTMS+V E E Q
Sbjct: 120 KVYFGNLSWGMDHLDLQDLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVNQ 179
Query: 153 FNG 155
NG
Sbjct: 180 LNG 182
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 85 EDGSNFSPD--LKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTM 140
EDG+ S + +KL+VGNL + V + LA +F G ++ V+ D TGRSRGFGFVT+
Sbjct: 6 EDGAAVSGEEGVKLYVGNLSWGVTNDSLADVFNQYGASDVTVVTDMNTGRSRGFGFVTV 64
>gi|297806641|ref|XP_002871204.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
gi|297317041|gb|EFH47463.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA--- 149
KLFVG L F L+ F G V ++ D+V+ RS+GFGFVT +SV+E + A
Sbjct: 35 KLFVGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASVDEAQKALME 94
Query: 150 --AQQFNGYV 157
QQFNG V
Sbjct: 95 FNGQQFNGRV 104
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+FVGNL ++VD LA F G VE +I DK TGR++GFG+VT S + + AA
Sbjct: 185 VFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTFESADALTAA 240
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEA 148
+P LF+GNL F+V ++ F G + V + D+ TG +GFG+V VE +
Sbjct: 278 APTTTLFLGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQK 337
Query: 149 AAQQFNG 155
A + NG
Sbjct: 338 AVEGLNG 344
>gi|291286869|ref|YP_003503685.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884029|gb|ADD67729.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 89
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNL +S + ++ LF G V+ +I D+ TGRS+GFGFV M++ ++ +AA
Sbjct: 1 MNIYVGNLSYSTNEDDISALFSKIGEVDSVRIITDRDTGRSKGFGFVEMANSDQAKAAID 60
Query: 152 QFN 154
+ N
Sbjct: 61 KLN 63
>gi|215275623|sp|Q7T3I7.2|RBM38_XENLA RecName: Full=RNA-binding protein 38; AltName: Full=RNA-binding
motif protein 38; AltName: Full=RNA-binding protein
XSeb4R
gi|49117866|gb|AAH72792.1| LOC398603 protein [Xenopus laevis]
Length = 214
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G+++ +VI D+ T +SRG+GFVTMS E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|148233159|ref|NP_001082613.1| RNA-binding protein 38 [Xenopus laevis]
gi|31087962|gb|AAP42281.1| RRM-type RNA-binding protein XSEB4R [Xenopus laevis]
Length = 214
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G+++ +VI D+ T +SRG+GFVTMS E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|145348372|ref|XP_001418624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578854|gb|ABO96917.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 151
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++ GNL + +D L L G+VE +I D+ TGRSRGFGFVTMSS E + Q
Sbjct: 73 RVYFGNLSWGMDHLDLQDLCGEFGSVEDSRLITDRETGRSRGFGFVTMSSEAEADEVVAQ 132
Query: 153 FNG 155
NG
Sbjct: 133 LNG 135
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 126 DKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
D+ TGRSRGF FVT++S E++E A NG
Sbjct: 2 DRNTGRSRGFAFVTLASAEDMERAMAATNG 31
>gi|341875918|gb|EGT31853.1| hypothetical protein CAEBREN_22820 [Caenorhabditis brenneri]
Length = 224
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G LP ++ +QL F GNV V+ D T +SRGFGFVT SSV V+ A
Sbjct: 13 KLFIGGLPHEINESQLGCYFSQWGNVIDACVLRDPSTQQSRGFGFVTYSSVFHVDIAMAH 72
Query: 153 FNGYVSNKLSPKKK 166
Y+ K K+
Sbjct: 73 RPHYIFGKQVDTKR 86
>gi|170058744|ref|XP_001865056.1| splicing factor [Culex quinquefasciatus]
gi|167877732|gb|EDS41115.1| splicing factor [Culex quinquefasciatus]
Length = 546
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 289 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALE 348
Query: 152 QFNGY 156
Q NG+
Sbjct: 349 QLNGF 353
>gi|56750756|ref|YP_171457.1| RRM type RNA-binding protein [Synechococcus elongatus PCC 6301]
gi|56685715|dbj|BAD78937.1| RRM type RNA-binding protein [Synechococcus elongatus PCC 6301]
Length = 142
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++++GNLP ++ A+L +F AG V ++ D+ TG+SRGF F T++S E +A ++
Sbjct: 3 VRVYIGNLPRVIEQAELDAVFAEAGEVSAKLVTDRKTGKSRGFAFATVASDELADALIER 62
Query: 153 FNG 155
FNG
Sbjct: 63 FNG 65
>gi|345567860|gb|EGX50762.1| hypothetical protein AOL_s00054g848 [Arthrobotrys oligospora ATCC
24927]
Length = 130
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L + D +L FE G VE +V+ D+ TGRSRGFGFV S+ +E AA +
Sbjct: 3 KLFIGGLSYGTDDNRLRQKFEEFGVVEDAIVVKDRDTGRSRGFGFVRFSNDDEATAAQEA 62
Query: 153 FN 154
N
Sbjct: 63 MN 64
>gi|168704267|ref|ZP_02736544.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 137
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL + V A L +F G V VI D+ TGRS+GFGFV M S +E +AA
Sbjct: 4 KLYVGNLSWGVTDAMLQEMFTPYGAVVSAQVIMDRDTGRSKGFGFVEMGSDQEAQAAISG 63
Query: 153 FNGYV 157
+G V
Sbjct: 64 MHGQV 68
>gi|168034678|ref|XP_001769839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678948|gb|EDQ65401.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 133
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L ++ D L F + G V V I D+ TGRSRGFGFV +S EE E A Q+
Sbjct: 46 KLFIGGLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQE 105
Query: 153 FNG 155
+G
Sbjct: 106 MDG 108
>gi|149632517|ref|XP_001508012.1| PREDICTED: RNA-binding protein 24-like [Ornithorhynchus anatinus]
Length = 267
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 49 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 108
Query: 153 FNGYVSNK 160
N + +
Sbjct: 109 PNPIIDGR 116
>gi|195397963|ref|XP_002057597.1| GJ18017 [Drosophila virilis]
gi|194141251|gb|EDW57670.1| GJ18017 [Drosophila virilis]
Length = 599
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++++ I D TGRS+G+GF+T + ++ + A +
Sbjct: 340 MRLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADDAKKALE 399
Query: 152 QFNGY 156
Q NG+
Sbjct: 400 QLNGF 404
>gi|10880789|gb|AAG24388.1|AF275678_1 PP239 protein [Homo sapiens]
Length = 418
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 241 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 300
Query: 152 QFNGY 156
Q NG+
Sbjct: 301 QLNGF 305
>gi|392409536|ref|YP_006446143.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390622672|gb|AFM23879.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 103
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
+ ++VGNL F+ + +L LFE G+V+ +I D+ TGRSRGFGFV MS+ E+
Sbjct: 3 INIYVGNLSFNANEGELRELFEQFGSVDSAKIITDQFTGRSRGFGFVEMSNRED 56
>gi|406996166|gb|EKE14624.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 84
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV---EMV-IYDKVTGRSRGFGFVTMSSVEEVEAAA 150
KLFVGNL F V +L LF+T G V E+V +DK +S+GFGFV M +VEE + A
Sbjct: 4 KLFVGNLDFDVKDIELEELFKTVGKVITAEIVRFFDK---KSKGFGFVEMETVEEAKTAI 60
Query: 151 QQFN 154
++ N
Sbjct: 61 EKLN 64
>gi|189237575|ref|XP_974855.2| PREDICTED: similar to splicing factor [Tribolium castaneum]
Length = 501
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEV 146
N + ++L+VG+L F++ L +FE G ++ + I D TGRS+G+GF+ + E+
Sbjct: 236 NMTGPMRLYVGSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDA 295
Query: 147 EAAAQQFNGY 156
+ A +Q NG+
Sbjct: 296 KKALEQLNGF 305
>gi|47225499|emb|CAG11982.1| unnamed protein product [Tetraodon nigroviridis]
Length = 261
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 13 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACKD 72
Query: 153 FNGYVSNK 160
N + +
Sbjct: 73 PNPIIDGR 80
>gi|19920866|ref|NP_609095.1| CG11266, isoform B [Drosophila melanogaster]
gi|24582412|ref|NP_723243.1| CG11266, isoform A [Drosophila melanogaster]
gi|7297213|gb|AAF52478.1| CG11266, isoform A [Drosophila melanogaster]
gi|15292031|gb|AAK93284.1| LD35730p [Drosophila melanogaster]
gi|22945834|gb|AAN10614.1| CG11266, isoform B [Drosophila melanogaster]
gi|220946034|gb|ACL85560.1| CG11266-PA [synthetic construct]
gi|220955788|gb|ACL90437.1| CG11266-PA [synthetic construct]
Length = 594
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 335 MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALE 394
Query: 152 QFNGY 156
Q NG+
Sbjct: 395 QLNGF 399
>gi|270007747|gb|EFA04195.1| hypothetical protein TcasGA2_TC014444 [Tribolium castaneum]
Length = 522
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEV 146
N + ++L+VG+L F++ L +FE G ++ + I D TGRS+G+GF+ + E+
Sbjct: 257 NMTGPMRLYVGSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDA 316
Query: 147 EAAAQQFNGY 156
+ A +Q NG+
Sbjct: 317 KKALEQLNGF 326
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 349 MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALE 408
Query: 152 QFNGY 156
Q NG+
Sbjct: 409 QLNGF 413
>gi|195338839|ref|XP_002036031.1| GM16278 [Drosophila sechellia]
gi|194129911|gb|EDW51954.1| GM16278 [Drosophila sechellia]
Length = 596
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 337 MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALE 396
Query: 152 QFNGY 156
Q NG+
Sbjct: 397 QLNGF 401
>gi|194862772|ref|XP_001970115.1| GG10454 [Drosophila erecta]
gi|190661982|gb|EDV59174.1| GG10454 [Drosophila erecta]
Length = 593
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 334 MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALE 393
Query: 152 QFNGY 156
Q NG+
Sbjct: 394 QLNGF 398
>gi|156363387|ref|XP_001626026.1| predicted protein [Nematostella vectensis]
gi|156212886|gb|EDO33926.1| predicted protein [Nematostella vectensis]
Length = 468
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VG+L F++ A + +FE G V+ V IYD T RS+G+GFV E + A +Q
Sbjct: 216 RLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQ 275
Query: 153 FNGY 156
NG+
Sbjct: 276 MNGF 279
>gi|339247123|ref|XP_003375195.1| RNA-binding protein 24 [Trichinella spiralis]
gi|316971505|gb|EFV55264.1| RNA-binding protein 24 [Trichinella spiralis]
Length = 402
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 79 EDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFG 136
+ LL+++D + F+ K+FVG LP+ + L FE G +E +VI D+ TG+SRG+G
Sbjct: 70 DPLLANKD-TTFT---KIFVGGLPYHTNDRTLREHFEQYGEIEEAVVITDRQTGKSRGYG 125
Query: 137 FVTMSSVEEVEAAAQQFNGYVSNK 160
FVTM E A ++ N + +
Sbjct: 126 FVTMKDRPSAERACKEPNPIIDGR 149
>gi|62320860|dbj|BAD93824.1| splicing factor-like protein [Arabidopsis thaliana]
Length = 308
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 56 QPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
QP+ PS +N+A S+ S G D KL+VGNL F++ QL +FE
Sbjct: 17 QPVMVKPSEAEKNLAQSN---------STTVGGTGPADRKLYVGNLHFNMSELQLRQIFE 67
Query: 116 TAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
G VE+V D TG+ +GFGF+ +E +AA NG
Sbjct: 68 AFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNG 109
>gi|434386836|ref|YP_007097447.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus PCC
6605]
gi|428017826|gb|AFY93920.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus PCC
6605]
Length = 184
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 94 LKLFVGNLPFS-VDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
++L+VGNLP S V+ +L +F AG + VI D+ TG+ RGFGFVT+ + E+ +
Sbjct: 3 IRLYVGNLPKSDVEREELQTVFADAGELVSVKVIKDRKTGKCRGFGFVTVETDEQADQII 62
Query: 151 QQFNGYVSNKL 161
+++NG + +L
Sbjct: 63 EKYNGAMFQEL 73
>gi|224094981|ref|XP_002310314.1| predicted protein [Populus trichocarpa]
gi|222853217|gb|EEE90764.1| predicted protein [Populus trichocarpa]
Length = 391
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAA 150
D KL+VGNL F++ QL LFE G VE+V D TG+ +GFGFV + +E +AA
Sbjct: 123 DRKLYVGNLHFNMTEMQLRQLFEPFGIVELVQLPLDLETGQCKGFGFVQFTQLENAKAAQ 182
Query: 151 QQFNG 155
NG
Sbjct: 183 SALNG 187
>gi|333917516|ref|YP_004491248.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|333747716|gb|AEF92893.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 179
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+ V L F G V V+ ++ TGRS+GFGFV M S E +AA Q
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|157279879|ref|NP_001098455.1| RNA-binding protein 24 [Bos taurus]
gi|151554292|gb|AAI49346.1| RBM24 protein [Bos taurus]
gi|296474026|tpg|DAA16141.1| TPA: RNA binding motif protein 24 [Bos taurus]
Length = 236
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|160901478|ref|YP_001567060.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|160367062|gb|ABX38675.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
Length = 176
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+ V L F G V V+ ++ TGRS+GFGFV M S E +AA Q
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|388566786|ref|ZP_10153228.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
gi|388265964|gb|EIK91512.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
Length = 133
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG--NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP++V L F G N V+ ++ TGRS+GFGFV M S E ++A Q
Sbjct: 4 KLYVGNLPYTVRDEDLQQAFSAFGAVNSAKVMMERETGRSKGFGFVEMGSDSEAQSAIQG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|312374824|gb|EFR22303.1| hypothetical protein AND_15459 [Anopheles darlingi]
Length = 560
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 303 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDTDTGRSKGYGFITFHNADDAKKALE 362
Query: 152 QFNGY 156
Q NG+
Sbjct: 363 QLNGF 367
>gi|222612603|gb|EEE50735.1| hypothetical protein OsJ_31052 [Oryza sativa Japonica Group]
Length = 118
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G + + D L F G V VI D+ TGRSRGFGFVT +S +E AA
Sbjct: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
Query: 153 FNGYVSNK 160
+G V ++
Sbjct: 92 MDGKVMDE 99
>gi|392410002|ref|YP_006446609.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390623138|gb|AFM24345.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 118
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTM-------SSVEE 145
+ +VGN+ F + QL LFET G V+ VI D+ TGRSRGFGFV M ++E+
Sbjct: 36 QFYVGNISFKTEDEQLRDLFETYGQVDAAKVIIDRATGRSRGFGFVEMPDRDAGLRAIED 95
Query: 146 VEAAAQQFNGYVSNKLSPKK 165
+++ N+ P+K
Sbjct: 96 LDSKDFMGRSLRVNEARPRK 115
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLF-ETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V S L +F E G V VIY++ +GRSRGFGFVT + ++VEAA +
Sbjct: 94 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 153
Query: 153 FNG 155
NG
Sbjct: 154 MNG 156
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 107 SAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
S+QL +F AG V V+YD+VT RSRGF FVTM SV++ + A + F+G
Sbjct: 3 SSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDG 53
>gi|294878540|ref|XP_002768400.1| Ser/Arg-rich splicing factor, putative [Perkinsus marinus ATCC
50983]
gi|239870803|gb|EER01118.1| Ser/Arg-rich splicing factor, putative [Perkinsus marinus ATCC
50983]
Length = 414
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+ KLF+G LP + D +L F G +E +V+ D+VTGRSRGFGF+T +++EA
Sbjct: 42 ERKLFLGGLPSNCDKQELKDYFSQFGEIEDSIVMMDRVTGRSRGFGFITFLHPQDMEAC 100
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGR 131
++ Q+E LL +D K+F+G LP S D +++ G+V+ V+YD+ TGR
Sbjct: 308 QWRQKEKLLLPDD------PCKVFLGGLPQSADQSRVTEHLSQYGHVQEVTVMYDRETGR 361
Query: 132 SRGFGFVTMSSVEEVEAA 149
RGF + T S+ +E AA
Sbjct: 362 HRGFAYATFSNNDEAMAA 379
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
K+F+G LP D+ L + G+V V++D+ TGR+RGFG+ T S+ E A
Sbjct: 191 KVFIGGLPPCADNNSLTRMLSQYGSVVSCNVMFDRGTGRNRGFGYATFSTPREANDACH 249
>gi|9758966|dbj|BAB09409.1| splicing factor-like protein [Arabidopsis thaliana]
Length = 604
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 38 HKLLAKPISIS-SSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKL 96
+ +++ P++I+ S + QP+ PS +N+A S+ S G D KL
Sbjct: 217 YDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSN---------STTVGGTGPADRKL 267
Query: 97 FVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
+VGNL F++ QL +FE G VE+V D TG+ +GFGF+ +E +AA N
Sbjct: 268 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALN 327
Query: 155 G 155
G
Sbjct: 328 G 328
>gi|78185978|ref|YP_374021.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78165880|gb|ABB22978.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 99
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 93 DLKL--FVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
DLK+ ++GNLP+SV L F G V+ +I DK +GRS+GFGFV MSS E A
Sbjct: 7 DLKMNIYIGNLPYSVSEDDLRDAFSQFGQVDSANIIMDKFSGRSKGFGFVDMSSDEAGRA 66
Query: 149 AAQQFN 154
A + N
Sbjct: 67 AIEAMN 72
>gi|392961668|ref|ZP_10327123.1| RNP-1 like RNA-binding protein [Pelosinus fermentans DSM 17108]
gi|421055582|ref|ZP_15518544.1| RNP-1 like RNA-binding protein [Pelosinus fermentans B4]
gi|421058760|ref|ZP_15521418.1| RNP-1 like RNA-binding protein [Pelosinus fermentans B3]
gi|421067562|ref|ZP_15529026.1| RNP-1 like RNA-binding protein [Pelosinus fermentans A12]
gi|421072632|ref|ZP_15533741.1| RNP-1 like RNA-binding protein [Pelosinus fermentans A11]
gi|421077513|ref|ZP_15538481.1| RNP-1 like RNA-binding protein [Pelosinus fermentans JBW45]
gi|392439347|gb|EIW17058.1| RNP-1 like RNA-binding protein [Pelosinus fermentans B4]
gi|392445832|gb|EIW23143.1| RNP-1 like RNA-binding protein [Pelosinus fermentans A11]
gi|392449187|gb|EIW26337.1| RNP-1 like RNA-binding protein [Pelosinus fermentans A12]
gi|392453508|gb|EIW30384.1| RNP-1 like RNA-binding protein [Pelosinus fermentans DSM 17108]
gi|392460168|gb|EIW36502.1| RNP-1 like RNA-binding protein [Pelosinus fermentans B3]
gi|392524368|gb|EIW47526.1| RNP-1 like RNA-binding protein [Pelosinus fermentans JBW45]
Length = 83
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLP+S + LA +F+ GNV +I DK TGRSRGFGFV + ++ +
Sbjct: 5 LYVGNLPWSTSDSDLADVFKEHGNVISSRIITDKETGRSRGFGFVEVDD-DDADKMVSMM 63
Query: 154 NG-------YVSNKLSPKKK 166
NG V N+ P+++
Sbjct: 64 NGSDFGGRQIVVNEARPREQ 83
>gi|351697087|gb|EHB00006.1| Putative RNA-binding protein 23 [Heterocephalus glaber]
Length = 436
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VG L F++ L G+FE G +E ++ D TG S+G+GF+T S E A +Q
Sbjct: 264 RLYVGCLHFNITEDMLRGIFEPFGKIENIVLMKDSETGHSKGYGFITFSESECARRAVEQ 323
Query: 153 FNGY 156
NG+
Sbjct: 324 LNGF 327
>gi|367020140|ref|XP_003659355.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
gi|347006622|gb|AEO54110.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
Length = 534
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
LFVGNLPFS D ++ F A V+ + D+ +GR +GF +VT SSVE+ + A +
Sbjct: 403 LFVGNLPFSADEDSVSKFFNKAAKVQSLRIPTDQESGRPKGFAYVTFSSVEDAKKAFETL 462
Query: 154 NG 155
NG
Sbjct: 463 NG 464
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFE--TAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNL + VD L F+ V+ DK +GRSRGFG+V + + E A +
Sbjct: 298 LWVGNLGWGVDDNALYEEFQHVGGVVGARVVTDKDSGRSRGFGYVDFENPDAAEKAYNEK 357
Query: 154 NG 155
NG
Sbjct: 358 NG 359
>gi|170071297|ref|XP_001869868.1| splicing factor [Culex quinquefasciatus]
gi|167867202|gb|EDS30585.1| splicing factor [Culex quinquefasciatus]
Length = 524
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 267 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALE 326
Query: 152 QFNGY 156
Q NG+
Sbjct: 327 QLNGF 331
>gi|88811230|ref|ZP_01126486.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
gi|88791769|gb|EAR22880.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
Length = 94
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
++VGNLPFS +L LF GNV+ V + D+ TGR RGFGFVTMS + A
Sbjct: 4 IYVGNLPFSASEDELRELFAAYGNVDSVRLMTDRDTGRPRGFGFVTMSDTDAASA 58
>gi|452822947|gb|EME29962.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Galdieria
sulphuraria]
Length = 368
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P K+FVG LP S FE G+V ++YD TG SRGFGFVT SS + VE
Sbjct: 139 PTRKIFVGGLPLSCTEEDFMEYFERLGHVVEAHIMYDHQTGISRGFGFVTFSSEDMVEKV 198
Query: 150 AQQFNGYVSNKLSPKKK 166
+Q + K+ KK
Sbjct: 199 FEQSQHEIKGKIVEVKK 215
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSV 143
D N + + K+FVG L + L FE+ G V +++ DK TG RGFGFVT
Sbjct: 42 DPGNQNNNSKIFVGGLSWETTEETLQKYFESYGRVLDCVIMRDKHTGHPRGFGFVTFEKE 101
Query: 144 EEVEAAAQQFNGYVSNKLSPKK 165
E + AA + + ++ KK
Sbjct: 102 ESADRAATKRHELDGRQVEAKK 123
>gi|347965530|ref|XP_003435781.1| AGAP013048-PA [Anopheles gambiae str. PEST]
gi|333470469|gb|EGK97632.1| AGAP013048-PA [Anopheles gambiae str. PEST]
Length = 93
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVE 144
KLFVGNLP++V + +L F G+V VIYDK TG SRG+GF+ S+ E
Sbjct: 17 KLFVGNLPWTVSTKELKTYFSKYGHVHSTNVIYDKSTGISRGYGFIVFSTRE 68
>gi|260834973|ref|XP_002612484.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
gi|229297861|gb|EEN68493.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
Length = 466
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + + D TGRS+G+GF+T E + A +
Sbjct: 144 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLMKDSETGRSKGYGFITFHDAECAKKALE 203
Query: 152 QFNGY 156
Q NG+
Sbjct: 204 QLNGF 208
>gi|71405729|ref|XP_805460.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70868876|gb|EAN83609.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 171
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLFVG LPF D +L LF GNVE + I + RS+G FVT S+VEE + A
Sbjct: 54 KLFVGQLPFETDELRLYKLFSAYGNVEHIHILRDLKNRSKGAAFVTYSNVEEADTA 109
>gi|440714448|ref|ZP_20895027.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
gi|436440644|gb|ELP33948.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
Length = 196
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++VGNL F +L G FE G V V I D+ TGRSRGF FV M+ E + A +
Sbjct: 57 IYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENL 116
Query: 154 NGY 156
NG+
Sbjct: 117 NGH 119
>gi|421614043|ref|ZP_16055112.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
gi|408495250|gb|EKJ99839.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
Length = 189
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++VGNL F +L G FE G V V I D+ TGRSRGF FV M+ E + A +
Sbjct: 57 IYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENL 116
Query: 154 NGY 156
NG+
Sbjct: 117 NGH 119
>gi|417304381|ref|ZP_12091404.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|449136828|ref|ZP_21772190.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
gi|327539333|gb|EGF25954.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|448884533|gb|EMB15023.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
Length = 195
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++VGNL F +L G FE G V V I D+ TGRSRGF FV M+ E + A +
Sbjct: 57 IYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENL 116
Query: 154 NGY 156
NG+
Sbjct: 117 NGH 119
>gi|392561750|gb|EIW54931.1| hypothetical protein TRAVEDRAFT_83958, partial [Trametes versicolor
FP-101664 SS1]
Length = 192
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
LFVGNLPF + L LF AG V+ + GRSRGFG V+ S+ + E A + FN
Sbjct: 118 LFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGADGRSRGFGTVSFSNETDAERAVRMFN 177
Query: 155 GYVSN 159
GY N
Sbjct: 178 GYEYN 182
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAA 149
P +L+VGN+P+S +L G+F G + +V I GRSRG+G V S+V E + A
Sbjct: 4 GPTNRLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQVA 63
Query: 150 AQQFNGY 156
Q +G+
Sbjct: 64 IQTLDGH 70
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV---EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
S L++ V NLP+S S L +F+ G V E V + TGRS+G+G V + E+ +
Sbjct: 203 SSGLQIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHAD-TGRSKGWGTVLFETREQAQ 261
Query: 148 AAAQQFNG 155
AA Q FNG
Sbjct: 262 AAIQGFNG 269
>gi|67517282|ref|XP_658521.1| hypothetical protein AN0917.2 [Aspergillus nidulans FGSC A4]
gi|40746790|gb|EAA65946.1| hypothetical protein AN0917.2 [Aspergillus nidulans FGSC A4]
gi|259488796|tpe|CBF88530.1| TPA: RNA splicing factor (Pad-1), putative (AFU_orthologue;
AFUA_1G15810) [Aspergillus nidulans FGSC A4]
Length = 552
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDK-VTGRSRGFGFVTMSSVEEVEAA 149
+P +L+VGN+ FS+D L +FE G +E V K TGRSRG+GFV + A
Sbjct: 270 APFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREA 329
Query: 150 AQQFNGY 156
++ NGY
Sbjct: 330 LEKMNGY 336
>gi|209156202|gb|ACI34333.1| RNA-binding protein 24-B [Salmo salar]
Length = 240
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + A L FE G+++ +VI D+ TG+SRG+GFVTM E A +
Sbjct: 27 KIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMLDQGAAERACKD 86
Query: 153 FNGYVSNK 160
N + +
Sbjct: 87 PNPIIDGR 94
>gi|115488680|ref|NP_001066827.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|77555842|gb|ABA98638.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649334|dbj|BAF29846.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|125579440|gb|EAZ20586.1| hypothetical protein OsJ_36195 [Oryza sativa Japonica Group]
gi|215694288|dbj|BAG89281.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708787|dbj|BAG94056.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 258
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L + D L F G V +I D+ TGRSRGFGF+T +S EE AA
Sbjct: 32 KLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITA 91
Query: 153 FNG 155
+G
Sbjct: 92 LDG 94
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+SV A L F G V V+ D+ TGRS+GFGFV M++ E +AA
Sbjct: 4 KIYVGNLPYSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAISG 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|348501352|ref|XP_003438234.1| PREDICTED: cold-inducible RNA-binding protein A-like [Oreochromis
niloticus]
Length = 183
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLF+G L F + LA F G +E V I DK TGRSRGFGFV + E+ +
Sbjct: 2 SDEGKLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNAEDAKD 61
Query: 149 AAQQFNG 155
A NG
Sbjct: 62 ALDAMNG 68
>gi|308801675|ref|XP_003078151.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
gi|116056602|emb|CAL52891.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
Length = 317
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEE 145
+++ P L+V N+ +D L +FE G V VI D T RSRGFGFV +S
Sbjct: 15 ASWRPHANLYVKNISERIDEMTLRTMFEACGEVVSCCVIRDVATNRSRGFGFVKFASTSR 74
Query: 146 VEAAAQQFNG 155
E A ++FNG
Sbjct: 75 AEDAIERFNG 84
>gi|157113933|ref|XP_001652145.1| hypothetical protein AaeL_AAEL006645 [Aedes aegypti]
gi|108877509|gb|EAT41734.1| AAEL006645-PA [Aedes aegypti]
Length = 91
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNLP+++ + +L F G+V+ VIYDK TG SRG+GFV S+ + A +
Sbjct: 15 KLFVGNLPWTISTKELQVYFSKYGHVQSSNVIYDKTTGLSRGYGFVVFSTRDGYSNATNK 74
>gi|221048043|gb|ACL98129.1| hyperosmotic glycine rich protein [Epinephelus coioides]
Length = 175
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLF+G L F + LA F G +E V I DK TGRSRGFGFV + ++ +
Sbjct: 2 SDEGKLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNCDDAKD 61
Query: 149 AAQQFNG 155
A + NG
Sbjct: 62 ALEGMNG 68
>gi|221044666|dbj|BAH14010.1| unnamed protein product [Homo sapiens]
Length = 270
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 93 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 152
Query: 152 QFNGY 156
Q NG+
Sbjct: 153 QLNGF 157
>gi|168702594|ref|ZP_02734871.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 144
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLPF+ A L LF G V V+ D+ TGRSRGFGFV MSS + AA
Sbjct: 6 LYVGNLPFTTTQADLEQLFGNYGTVTKAQVVSDRETGRSRGFGFVEMSSGADEAIAALNN 65
Query: 154 NGYVSNKLS 162
Y +L+
Sbjct: 66 AEYQGRRLT 74
>gi|218193471|gb|EEC75898.1| hypothetical protein OsI_12955 [Oryza sativa Indica Group]
Length = 139
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|398407631|ref|XP_003855281.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
gi|339475165|gb|EGP90257.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
Length = 598
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKV-TGRSRGFGFVTMSSVEEV 146
SN P +L+VGN+ FS++ + L +FE G +E V K TGRS+G+GFV + +E
Sbjct: 305 SNGIPFHRLYVGNIHFSIEESDLRDVFEPFGELEFVQLQKEDTGRSKGYGFVQFAKSDEA 364
Query: 147 EAAAQQFNGY 156
+ A ++ NG+
Sbjct: 365 KIALEKMNGF 374
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+FV L ++ + QL FE +G V ++ D+V+GRS+G G+V + E V+ A
Sbjct: 214 VFVQQLAAALRTKQLKAFFEQSGPVVEAQIVKDRVSGRSKGVGYVEFADEESVQKA 269
>gi|410905335|ref|XP_003966147.1| PREDICTED: RNA-binding protein 24-like [Takifugu rubripes]
Length = 235
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 13 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACKD 72
Query: 153 FNGYVSNK 160
N + +
Sbjct: 73 PNPIIDGR 80
>gi|326319544|ref|YP_004237216.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376380|gb|ADX48649.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 124
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+S L F GNV V+ ++ TGRS+GFGFV M S E +AA Q
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGNVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 153 FNG 155
+G
Sbjct: 64 AHG 66
>gi|119586631|gb|EAW66227.1| RNA binding motif protein 23, isoform CRA_f [Homo sapiens]
Length = 269
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 93 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 152
Query: 152 QFNGY 156
Q NG+
Sbjct: 153 QLNGF 157
>gi|432908495|ref|XP_004077889.1| PREDICTED: RNA-binding protein 24-like isoform 1 [Oryzias latipes]
Length = 237
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 13 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACKD 72
Query: 153 FNGYVSNK 160
N + +
Sbjct: 73 PNPIIDGR 80
>gi|373953846|ref|ZP_09613806.1| RNP-1 like RNA-binding protein [Mucilaginibacter paludis DSM 18603]
gi|373890446|gb|EHQ26343.1| RNP-1 like RNA-binding protein [Mucilaginibacter paludis DSM 18603]
Length = 107
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K+F+ LPF V+ +L +F G+V+ ++ D+ TG+S+GFGFV M++ +E + A +
Sbjct: 1 MKIFIAGLPFQVEEEELTAVFGDFGHVKSLRIVKDRETGQSKGFGFVEMTNDDEAKEAIK 60
Query: 152 QFNG--YVSNKLS 162
NG Y ++S
Sbjct: 61 NMNGADYYGRRIS 73
>gi|134053933|ref|NP_062420.2| RNA-binding protein 38 [Mus musculus]
gi|215273893|sp|Q62176.2|RBM38_MOUSE RecName: Full=RNA-binding protein 38; AltName: Full=RNA-binding
motif protein 38; AltName: Full=RNA-binding
region-containing protein 1; AltName: Full=ssDNA-binding
protein SEB4
gi|55154535|gb|AAH85307.1| RNA binding motif protein 38 [Mus musculus]
gi|74187619|dbj|BAE36749.1| unnamed protein product [Mus musculus]
gi|74196725|dbj|BAE43103.1| unnamed protein product [Mus musculus]
gi|74222042|dbj|BAE26841.1| unnamed protein product [Mus musculus]
gi|148674673|gb|EDL06620.1| RNA binding motif protein 38, isoform CRA_a [Mus musculus]
Length = 237
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 60 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
SPS F R A S + + + F+ K+FVG LP+ A L FE G+
Sbjct: 7 CSPSVFPRPSAAPSA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKYFEGFGD 57
Query: 120 VE--MVIYDKVTGRSRGFGFVTM 140
+E +VI D+ TG+SRG+GFVTM
Sbjct: 58 IEEAVVITDRQTGKSRGYGFVTM 80
>gi|32476441|ref|NP_869435.1| RNA-binding protein [Rhodopirellula baltica SH 1]
gi|32446986|emb|CAD78892.1| RNA-binding protein [Rhodopirellula baltica SH 1]
Length = 206
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++VGNL F +L G FE G V V I D+ TGRSRGF FV M+ E + A +
Sbjct: 68 IYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENL 127
Query: 154 NGY 156
NG+
Sbjct: 128 NGH 130
>gi|125548044|gb|EAY93866.1| hypothetical protein OsI_15642 [Oryza sativa Indica Group]
Length = 684
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ L++G LP ++D + L GLF G + M VI D++TG+S+G+GFV S V + AA
Sbjct: 338 ETNLYIGYLPPTLDDSGLIGLFSQFGEIVMAKVIRDRITGQSKGYGFVKYSDVSQANAAI 397
Query: 151 QQFNGY 156
NGY
Sbjct: 398 AAMNGY 403
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
S + KLFVG L F LA F GN+ V I DK TGRSRGFGFV + E+ +
Sbjct: 1 MSDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAK 60
Query: 148 AAAQQFNG 155
A + NG
Sbjct: 61 DALEGMNG 68
>gi|195434196|ref|XP_002065089.1| GK15272 [Drosophila willistoni]
gi|194161174|gb|EDW76075.1| GK15272 [Drosophila willistoni]
Length = 612
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++++ I D TGRS+G+GF+T + ++ + A +
Sbjct: 353 MRLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADDAKKALE 412
Query: 152 QFNGY 156
Q NG+
Sbjct: 413 QLNGF 417
>gi|359806849|ref|NP_001241058.1| uncharacterized protein LOC100776344 [Glycine max]
gi|255634852|gb|ACU17785.1| unknown [Glycine max]
Length = 340
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFV L ++ S L F+ G +E VIYDKVTG+SRG+GF+T ++E + A +
Sbjct: 68 KLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRA 127
Query: 153 FNGYVSNKLS 162
+ + +L+
Sbjct: 128 PSKLIDGRLA 137
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 87 GSNFSPDL---KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMS 141
G++ +PDL KL++G+L V S L F G +E V YD+ T SRGFGFVT
Sbjct: 148 GTSSAPDLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYK 207
Query: 142 SVEEVEAA 149
+ E + A
Sbjct: 208 TAEAAKKA 215
>gi|303286031|ref|XP_003062305.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455822|gb|EEH53124.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 227
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + +D L L G V +I D+ TGRSRGFGFVTMSS E+ E
Sbjct: 147 KVYFGNLSWGMDHLDLQDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKVVNG 206
Query: 153 FNG 155
NG
Sbjct: 207 LNG 209
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 94 LKLFVGNLPFSVDSAQLAGLF-ETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+KL+VGNL + VD + L +F E + VI D TGRSRGFGFV + S E E A +
Sbjct: 43 VKLYVGNLSWGVDDSMLTDVFAEYDASGIAVISDMNTGRSRGFGFVEVPSQEIAEKAIAE 102
Query: 153 FNG 155
+G
Sbjct: 103 LDG 105
>gi|358378081|gb|EHK15764.1| hypothetical protein TRIVIDRAFT_38275 [Trichoderma virens Gv29-8]
Length = 300
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
S+ P +FVGN+P+ + Q+ +F +AG VE ++YD TGR +GFGF +
Sbjct: 2 SSRPPSRVVFVGNIPYGLSEEQITDIFSSAGKVERFRLVYDSETGRPKGFGFADYPDTDS 61
Query: 146 VEAAAQQFNGY 156
+A + N Y
Sbjct: 62 ASSAVRNLNEY 72
>gi|19881711|gb|AAM01112.1|AC098682_16 Putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 119
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G + + D L F G V VI D+ TGRSRGFGFVT +S +E AA
Sbjct: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
Query: 153 FNGYVSNKLSP 163
+G K P
Sbjct: 92 MDGKTFPKTEP 102
>gi|381207415|ref|ZP_09914486.1| RNA-binding region RNP-1 (RNA recognition motif) [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 117
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAA 150
++ ++VGNL +SV QL F G V+ V I D++TGRS+GFGFV M E EAA
Sbjct: 26 NVNIYVGNLAYSVTEEQLRDAFGQFGEVDKVSIIMDRMTGRSKGFGFVEMQDDSEAEAAI 85
Query: 151 QQFN 154
+ N
Sbjct: 86 RGLN 89
>gi|348533904|ref|XP_003454444.1| PREDICTED: RNA-binding protein 24-like [Oreochromis niloticus]
Length = 235
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|242033301|ref|XP_002464045.1| hypothetical protein SORBIDRAFT_01g011240 [Sorghum bicolor]
gi|241917899|gb|EER91043.1| hypothetical protein SORBIDRAFT_01g011240 [Sorghum bicolor]
Length = 102
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
P+ + FV NLP+S + L F + G + V YD+ TGRSRGFGFV + ++ A
Sbjct: 16 PEYRAFVSNLPYSTNDGSLKDAFSSYGPLNADVAYDRDTGRSRGFGFVQFDDKKSMDNAI 75
Query: 151 QQFNG 155
Q NG
Sbjct: 76 QGMNG 80
>gi|213404018|ref|XP_002172781.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
gi|212000828|gb|EEB06488.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 485
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 68 NVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN-VEMVIYD 126
++SE + E + +++ S +LFVGNLP+SV L LF AGN V +
Sbjct: 121 GTGINSEVRRSEGMGGEDESSR-----QLFVGNLPYSVRWQDLKDLFRKAGNVVRADVQM 175
Query: 127 KVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
GRSRG G V M +V+E + A + F+
Sbjct: 176 NHEGRSRGNGIVLMETVQEAQMAIRMFD 203
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 84 DEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSS 142
D +N P + +GNLP+ L LF + G +E I + +GRSRGFG V +
Sbjct: 267 DRAYANGPPSPIIHIGNLPWLTVDQDLLDLFNSFGKIERAAIAYEPSGRSRGFGVVQFQT 326
Query: 143 VEEVEAAAQQFNGYV 157
E +A ++ NGYV
Sbjct: 327 TPEAASAIEKLNGYV 341
>gi|425765484|gb|EKV04163.1| hypothetical protein PDIP_88470 [Penicillium digitatum Pd1]
gi|425778342|gb|EKV16473.1| hypothetical protein PDIG_20660 [Penicillium digitatum PHI26]
Length = 136
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAA-- 150
KLF+G L ++ D L FE G VE V+ D+ TGRSRGFGFV S+ EE AA
Sbjct: 3 KLFIGGLSWNTDDNSLRQRFEEFGVVEDATVVKDRDTGRSRGFGFVRFSTDEEATAAMNA 62
Query: 151 ---QQFNG 155
Q+F+G
Sbjct: 63 MNNQEFDG 70
>gi|194758325|ref|XP_001961412.1| GF14957 [Drosophila ananassae]
gi|190615109|gb|EDV30633.1| GF14957 [Drosophila ananassae]
Length = 594
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 335 MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALE 394
Query: 152 QFNGY 156
Q NG+
Sbjct: 395 QLNGF 399
>gi|406946237|gb|EKD77506.1| glycine-rich RNA-binding protein [uncultured bacterium]
Length = 113
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL ++ +L F GN+E + I D TGRS+GFGF+T +S+++ E+A
Sbjct: 5 KIYVGNLSYNTTEDELRDYFSQFGNIEDIKLIIDFNTGRSKGFGFITYASIQDCESAVTT 64
Query: 153 FNG 155
NG
Sbjct: 65 ANG 67
>gi|169244425|gb|ACA50486.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|306415963|gb|ADM86856.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|385718874|gb|AFI71864.1| Glycin-rich RNA binding protein [Oryza sativa]
Length = 161
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|195050249|ref|XP_001992854.1| GH13506 [Drosophila grimshawi]
gi|193899913|gb|EDV98779.1| GH13506 [Drosophila grimshawi]
Length = 628
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++++ I D TGRS+G+GF+T + ++ + A +
Sbjct: 369 MRLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDNETGRSKGYGFITYHNADDAKKALE 428
Query: 152 QFNGY 156
Q NG+
Sbjct: 429 QLNGF 433
>gi|125537516|gb|EAY84004.1| hypothetical protein OsI_39235 [Oryza sativa Indica Group]
Length = 161
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|195471585|ref|XP_002088083.1| GE14328 [Drosophila yakuba]
gi|194174184|gb|EDW87795.1| GE14328 [Drosophila yakuba]
Length = 590
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 331 MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALE 390
Query: 152 QFNGY 156
Q NG+
Sbjct: 391 QLNGF 395
>gi|395334965|gb|EJF67341.1| hypothetical protein DICSQDRAFT_46822 [Dichomitus squalens LYAD-421
SS1]
Length = 102
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L V L VD+ L F G V+ V+YD T SRGFGFVTM SVEE +AA
Sbjct: 14 LHVSGLSHKVDTRDLEAAFAKCGRVQKAQVMYDPHTRESRGFGFVTMESVEEADAAITAM 73
Query: 154 NG 155
NG
Sbjct: 74 NG 75
>gi|342181735|emb|CCC91214.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 177
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 87 GSNFSPD---------LKLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFG 136
G FSP+ KLFVG LPF D +L LF G VE + I RS+G
Sbjct: 45 GRAFSPESIPQASPTAAKLFVGQLPFETDEKRLYDLFSAYGTVEHIHILRDSQNRSKGAA 104
Query: 137 FVTMSSVEEVEAA 149
FVT SSVEE +AA
Sbjct: 105 FVTYSSVEEADAA 117
>gi|170284570|gb|AAI61141.1| rbm23 protein [Xenopus (Silurana) tropicalis]
Length = 272
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E + + + TGRS+GFGF+T + E A +
Sbjct: 99 MRLYVGSLHFNITEDMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRALE 158
Query: 152 QFNGY 156
Q NG+
Sbjct: 159 QLNGF 163
>gi|449544433|gb|EMD35406.1| hypothetical protein CERSUDRAFT_124727 [Ceriporiopsis subvermispora
B]
Length = 982
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
LFVGNLPF + L LF AG V+ + GRSRGFG V+ ++ + E A + F
Sbjct: 266 NLFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGADGRSRGFGTVSFANEADAERAVRMF 325
Query: 154 NGYVSN 159
NG+ N
Sbjct: 326 NGFEYN 331
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG---RSRGFGFVTMSSVEEVEAAAQ 151
+LFVGNLP+ V L LF AG V + D G RSRGFG V ++S E+ A
Sbjct: 111 QLFVGNLPYRVRWQDLKDLFRRAGTV--LRADVSLGPDNRSRGFGTVLLASAEDAGRAVD 168
Query: 152 QFNGYV 157
FNGY
Sbjct: 169 MFNGYC 174
>gi|384493186|gb|EIE83677.1| hypothetical protein RO3G_08382 [Rhizopus delemar RA 99-880]
Length = 413
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 77 QEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRG 134
+E + D++ ++ + L++ NL ++ +A L LF G + V+ + TG+S+G
Sbjct: 11 HQEKAMEDDNNNSVVDMMNLYIKNLDPNITNADLNHLFRKFGRIVSARVMTNAATGQSKG 70
Query: 135 FGFVTMSSVEEVEAAAQQFNGYVSN 159
+GFV+ EE AA ++ NGY+ N
Sbjct: 71 YGFVSFGKSEEAAAALKEMNGYIVN 95
>gi|430745770|ref|YP_007204899.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430017490|gb|AGA29204.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 133
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KL+VGNL ++V + L LF G V+ VI D+ TGRS+GFGFV M S E +AA
Sbjct: 5 KLYVGNLAYTVSNTDLEQLFGEFGTVQSAQVIQDRDTGRSKGFGFVEMDSDAEAQAA 61
>gi|149030036|gb|EDL85128.1| RNA-binding region (RNP1, RRM) containing 1 (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 237
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTM 140
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM
Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTM 80
>gi|337278094|ref|YP_004617565.1| RNA-binding protein [Ramlibacter tataouinensis TTB310]
gi|334729170|gb|AEG91546.1| Candidate RNA-binding protein [Ramlibacter tataouinensis TTB310]
Length = 95
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+S +++ F G V V+ D+ TGRS+GFGFV M S E ++A Q
Sbjct: 4 KLYVGNLPYSFGDSEMQQAFSQFGTVGSAKVVMDRDTGRSKGFGFVEMGSAAEAQSAIQG 63
Query: 153 FNG 155
+G
Sbjct: 64 MHG 66
>gi|156045437|ref|XP_001589274.1| hypothetical protein SS1G_09907 [Sclerotinia sclerotiorum 1980]
gi|154694302|gb|EDN94040.1| hypothetical protein SS1G_09907 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 321
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P +FVGN+P+ + Q+ +F +AGNV ++YD+ TGR +GFGF + +A
Sbjct: 5 PSKSVFVGNIPYGLTEEQIVDIFSSAGNVINFRLVYDRETGRPKGFGFAEYPDSDSAASA 64
Query: 150 AQQFNGY 156
+ N Y
Sbjct: 65 VRNLNDY 71
>gi|443696487|gb|ELT97181.1| hypothetical protein CAPTEDRAFT_153918 [Capitella teleta]
Length = 230
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L F+ G++E +VI D+ TG+SRG+GFVTM+ E A ++
Sbjct: 15 KIFVGGLPYHTTDESLREFFQQFGDIEEAVVITDRGTGKSRGYGFVTMTDRTAAERACKE 74
Query: 153 FNGYVSNK 160
N + +
Sbjct: 75 PNPIIDGR 82
>gi|452002034|gb|EMD94493.1| hypothetical protein COCHEDRAFT_1131167 [Cochliobolus
heterostrophus C5]
Length = 125
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L + D L FE G VE +V+ D+ TGRSRGFGFV + E +AA Q
Sbjct: 3 KLFIGGLAWHTDDQTLRSKFEEFGPVEEAVVVKDRDTGRSRGFGFVRYAQETEADAAMQA 62
Query: 153 FN 154
N
Sbjct: 63 MN 64
>gi|357462751|ref|XP_003601657.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355490705|gb|AES71908.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 146
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA--- 149
KLF+G L ++VD L F T G+V VI D+ TGRSRGFGFV +S E +A
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 150 -AQQFNG 155
Q NG
Sbjct: 97 DGQDLNG 103
>gi|338214373|ref|YP_004658434.1| RNP-1 like RNA-binding protein [Runella slithyformis DSM 19594]
gi|336308200|gb|AEI51302.1| RNP-1 like RNA-binding protein [Runella slithyformis DSM 19594]
Length = 127
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++V N+PF + +L LFE G V +I DK TG+SRGF FV M + +E + A
Sbjct: 1 MNIYVANVPFKANDDELRELFEEFGEVSSARIIMDKFTGKSRGFAFVEMPNDDEAKQAIS 60
Query: 152 QFNGY 156
Q N +
Sbjct: 61 QLNDF 65
>gi|374298432|ref|YP_005050071.1| RNP-1 like RNA-binding protein [Desulfovibrio africanus str. Walvis
Bay]
gi|332551368|gb|EGJ48412.1| RNP-1 like RNA-binding protein [Desulfovibrio africanus str. Walvis
Bay]
Length = 104
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLPF+ + LF T GNV V I D+ TGR RGFGFV M + + +A Q
Sbjct: 5 LYVGNLPFTATEDDIRNLFATHGNVNSVKLISDRETGRPRGFGFVEMDA-DGATSAEQAL 63
Query: 154 NG 155
NG
Sbjct: 64 NG 65
>gi|299531903|ref|ZP_07045303.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
gi|298720078|gb|EFI61035.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
Length = 162
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+ V L F G V V+ ++ TGRS+GFGFV M+S E +AA Q
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|264680852|ref|YP_003280762.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
gi|262211368|gb|ACY35466.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
Length = 164
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+ V L F G V V+ ++ TGRS+GFGFV M+S E +AA Q
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|157108428|ref|XP_001650224.1| splicing factor [Aedes aegypti]
gi|108879330|gb|EAT43555.1| AAEL005046-PA [Aedes aegypti]
Length = 544
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S ++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ +
Sbjct: 284 SGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKK 343
Query: 149 AAQQFNGY 156
A +Q NG+
Sbjct: 344 ALEQLNGF 351
>gi|227206234|dbj|BAH57172.1| AT5G09880 [Arabidopsis thaliana]
Length = 505
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 38 HKLLAKPISIS-SSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKL 96
+ +++ P++I+ S + QP+ PS +N+A S+ S G D KL
Sbjct: 195 YDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSN---------STTVGGTGPADRKL 245
Query: 97 FVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
+VGNL F++ QL +FE G VE+V D TG+ +GFGF+ +E +AA N
Sbjct: 246 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALN 305
Query: 155 G 155
G
Sbjct: 306 G 306
>gi|451853629|gb|EMD66922.1| hypothetical protein COCSADRAFT_168179 [Cochliobolus sativus
ND90Pr]
Length = 159
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L + D L FE G VE +V+ D+ TGRSRGFGFV + E +AA Q
Sbjct: 3 KLFIGGLAWHTDDQTLRSKFEEFGPVEEAVVVKDRDTGRSRGFGFVRYAQETEADAAMQA 62
Query: 153 FN 154
N
Sbjct: 63 MN 64
>gi|125590156|gb|EAZ30506.1| hypothetical protein OsJ_14553 [Oryza sativa Japonica Group]
Length = 684
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
+ L++G LP ++D + L GLF G + M VI D++TG+S+G+GFV S V + AA
Sbjct: 338 ETNLYIGYLPPTLDDSGLIGLFSQFGEIVMAKVIRDRITGQSKGYGFVKYSDVSQANAAI 397
Query: 151 QQFNGY 156
NGY
Sbjct: 398 AAMNGY 403
>gi|2293480|gb|AAB65412.1| glycine-rich protein [Oryza sativa Indica Group]
Length = 161
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|294937440|ref|XP_002782069.1| Ser/Arg-rich splicing factor, putative [Perkinsus marinus ATCC
50983]
gi|239893400|gb|EER13864.1| Ser/Arg-rich splicing factor, putative [Perkinsus marinus ATCC
50983]
Length = 408
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G LP + D +L F G +E +V+ D+VTGRSRGFGF+T +++EA
Sbjct: 54 KLFLGGLPSNCDKQELKDYFSQFGEIEDSIVMMDRVTGRSRGFGFITFLHPQDMEAC 110
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 90 FSPD--LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
F PD K+F+G LP S D +++ G+V+ V+YD+ TGR RGF + T S+ +E
Sbjct: 328 FLPDDPCKVFLGGLPQSADQSRVTEHLSQYGHVQEVTVMYDRETGRHRGFAYATFSNNDE 387
Query: 146 VEAAAQQFNGYVSNKLS 162
AA N + KL
Sbjct: 388 AIAAING-NNVIHGKLG 403
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
K+F+G LP D+ LA + G+V V++D+ TGR+RGFG+ T S+ E A
Sbjct: 203 KVFIGGLPPCADNNSLARMLSQYGSVVNCNVMFDRGTGRNRGFGYATFSTPHEANDACH 261
>gi|125536731|gb|EAY83219.1| hypothetical protein OsI_38428 [Oryza sativa Indica Group]
Length = 257
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L + D L F G V +I D+ TGRSRGFGF+T +S EE AA
Sbjct: 32 KLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITA 91
Query: 153 FNG 155
+G
Sbjct: 92 LDG 94
>gi|18103931|emb|CAC83314.1| glycine rich RNA binding protein [Oryza sativa Indica Group]
Length = 194
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|418528344|ref|ZP_13094294.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
gi|371454720|gb|EHN67722.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
Length = 163
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+ V L F G V V+ ++ TGRS+GFGFV M+S E +AA Q
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|440912092|gb|ELR61691.1| hypothetical protein M91_00743 [Bos grunniens mutus]
Length = 266
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA--- 150
KLF+G L F L FE G + + V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMDPNTKRSRGFGFVTYATVEEVDAAMNAR 74
Query: 151 -QQFNGYVSNKLSPKK 165
Q+ +G V ++PK+
Sbjct: 75 PQKMDGRV---VAPKR 87
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
K+FVG + + L FE G +E++ + D+ +G+ RGF FVT + V+
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 159
>gi|299530322|ref|ZP_07043747.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
gi|298721693|gb|EFI62625.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
Length = 113
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+SV + L F G V V+ D+ TGRS+GF FV M+S +E +AA
Sbjct: 4 KIYVGNLPYSVTDSNLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAISA 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|443894565|dbj|GAC71913.1| acyl-coa oxidase [Pseudozyma antarctica T-34]
Length = 1385
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
LFVGNLPF L LF AGN++ + GRSRGFG V +S E+ + A + ++
Sbjct: 722 LFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNAVRLYH 781
Query: 155 GY 156
GY
Sbjct: 782 GY 783
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
P +L V NLP+ V L LF AG V + RSRG+G V M++ ++ AA
Sbjct: 411 PRTQLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSADNRSRGYGTVLMATEQDAIKAA 470
Query: 151 QQFNGYV 157
G+
Sbjct: 471 DMLGGFT 477
>gi|402574395|ref|YP_006623738.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
meridiei DSM 13257]
gi|402255592|gb|AFQ45867.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
meridiei DSM 13257]
Length = 83
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 7/64 (10%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA--AQ 151
L+VGNLP++ + +L F G VE +I D+ TGRSRGFGF+ VE+++AA A+
Sbjct: 5 LYVGNLPWNTTAEELGQFFSEYGQVESSRIITDRETGRSRGFGFI---EVEDMDAARMAE 61
Query: 152 QFNG 155
+ NG
Sbjct: 62 ELNG 65
>gi|333999539|ref|YP_004532151.1| RNA-binding protein [Treponema primitia ZAS-2]
gi|333738431|gb|AEF83921.1| RNA-binding protein [Treponema primitia ZAS-2]
Length = 89
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL ++ L LF G VE +I D+ TG S+GFGFV MS+ EE +AA +
Sbjct: 4 KLYVGNLSYNTYEDNLRTLFSQYGTVESVKIITDRDTGNSKGFGFVEMSTEEEAQAAIRG 63
Query: 153 FN 154
N
Sbjct: 64 TN 65
>gi|255539831|ref|XP_002510980.1| zinc finger protein, putative [Ricinus communis]
gi|223550095|gb|EEF51582.1| zinc finger protein, putative [Ricinus communis]
Length = 798
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D L++G LP ++D L GLF G++ M VI D+VTG S+G+GFV ++ A
Sbjct: 496 DTNLYIGYLPPNLDDDGLIGLFSAFGDIVMAKVIKDRVTGVSKGYGFVKYRDIQMANNAI 555
Query: 151 QQFNGY 156
NGY
Sbjct: 556 ASMNGY 561
>gi|449486948|ref|XP_004157450.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 173
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG L + D +L F G V VI D+ TGRSRGFGFVT + E+ +A Q
Sbjct: 41 KVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 LDG 103
>gi|449439323|ref|XP_004137435.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 171
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG L + D +L F G V VI D+ TGRSRGFGFVT + E+ +A Q
Sbjct: 41 KVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 LDG 103
>gi|406985531|gb|EKE06283.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 83
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
KLF+GNL + V S L F + G V +VI D++TGRSRGFGFV M + E+ A +
Sbjct: 3 KLFIGNLSWEVTSDDLRAFFASFGTVIDAVVIMDRMTGRSRGFGFVEMETEEQANKALE 61
>gi|407468|emb|CAA53065.1| SEB4 [Mus musculus]
Length = 237
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTM 140
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM
Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTM 80
>gi|392578419|gb|EIW71547.1| hypothetical protein TREMEDRAFT_56482 [Tremella mesenterica DSM
1558]
Length = 223
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL ++ L F G V +V+ D+ TGRSRGFGFVT S+ EE E + QQ
Sbjct: 5 KVYVGNLSWNTTDDTLRDAFMQFGQVLDSIVMKDRETGRSRGFGFVTFSTAEEAEISIQQ 64
Query: 153 FN 154
N
Sbjct: 65 MN 66
>gi|168048203|ref|XP_001776557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672148|gb|EDQ58690.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 372
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL F++ QL +FE G VE+V D TG+S+G+GFV + +E+ AA Q
Sbjct: 73 RLYVGNLHFNMTEDQLRQVFEPFGPVELVQLPSDIETGQSKGYGFVQYARLEDARAAQQN 132
Query: 153 FNG 155
NG
Sbjct: 133 LNG 135
>gi|406994417|gb|EKE13409.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 155
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFV LPFS +L LF + GNV +I D+ TGRS+GFGFV M + EE A +
Sbjct: 25 RLFVAGLPFSSTQDELRDLFASVGNVVSTSIITDRETGRSKGFGFVEMETSEEASNAIAK 84
Query: 153 FN 154
N
Sbjct: 85 LN 86
>gi|430744757|ref|YP_007203886.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430016477|gb|AGA28191.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 114
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL ++V+ + L LF G V+ +I D+ T RS+GFGFV M + + +AA Q
Sbjct: 4 KLYVGNLTYNVNESDLEALFTPFGTVQSAQIIIDRDTNRSKGFGFVEMDTDAQAQAAIQG 63
Query: 153 FN 154
N
Sbjct: 64 LN 65
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
KL+V NL +S+ +A + LF G V ++ I GRS+G+ FVTM+S EE +AA +F
Sbjct: 74 KLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKF 133
Query: 154 NGY 156
+ Y
Sbjct: 134 DSY 136
>gi|255573485|ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 278
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 74 EFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRS 132
F ++++ E+ + KL+V NLP+S+ + LF G V ++ I + GRS
Sbjct: 63 RFSTAQEIMIPEETQETTQKRKLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKQKNGRS 122
Query: 133 RGFGFVTMSSVEEVEAAAQQFNGY-VSNKL 161
RGF FVT++S EE +AA + + + VS ++
Sbjct: 123 RGFAFVTLASGEEAQAAIDKLDSHEVSGRI 152
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++V NL + V S L F T + V++D TGRS G+GFV+ ++ EE EAA
Sbjct: 180 KIYVSNLAWKVRSTHLREFFSTNFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAISA 239
Query: 153 FNG 155
+G
Sbjct: 240 LDG 242
>gi|383864354|ref|XP_003707644.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Megachile
rotundata]
Length = 507
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 246 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 305
Query: 152 QFNGY 156
Q NG+
Sbjct: 306 QLNGF 310
>gi|373459913|ref|ZP_09551680.1| RNP-1 like RNA-binding protein [Caldithrix abyssi DSM 13497]
gi|371721577|gb|EHO43348.1| RNP-1 like RNA-binding protein [Caldithrix abyssi DSM 13497]
Length = 99
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGN+P S D + LFE G+V V + D+ TG RGFGFVTM S +E + A
Sbjct: 1 MNIYVGNIPKSTDEQTIRDLFEEYGSVSEVKLLRDRYTGELRGFGFVTMESDDEAQNAID 60
Query: 152 QFNG-------YVSNKLSPK 164
N V NK P+
Sbjct: 61 NINNTDLGGRTLVVNKARPR 80
>gi|350410161|ref|XP_003488967.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus impatiens]
Length = 508
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|340718900|ref|XP_003397900.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus
terrestris]
Length = 508
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|340718898|ref|XP_003397899.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus
terrestris]
Length = 520
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 259 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 318
Query: 152 QFNGY 156
Q NG+
Sbjct: 319 QLNGF 323
>gi|168037994|ref|XP_001771487.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677214|gb|EDQ63687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 774
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D L+VG LP SVD LA LF G VE VI D++TG S+G+GFV S AA
Sbjct: 463 DANLYVGYLPSSVDDEGLARLFAPFGAVEHAKVIRDRLTGASKGYGFVKFSDPSSATAAV 522
Query: 151 QQFNGY 156
NGY
Sbjct: 523 THRNGY 528
>gi|108710322|gb|ABF98117.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 153
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|50881454|gb|AAT85299.1| glycine-rich RNA-binding protein, putative [Oryza sativa Japonica
Group]
gi|108710320|gb|ABF98115.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|154550663|gb|ABS83497.1| receptor-like serine threonine kinase [Oryza sativa Japonica Group]
gi|169244423|gb|ACA50485.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|215697732|dbj|BAG91726.1| unnamed protein product [Oryza sativa Japonica Group]
gi|306415943|gb|ADM86846.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
Length = 162
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|110638796|ref|YP_679005.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
gi|110281477|gb|ABG59663.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
Length = 143
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +FVG+LPFS++ +L FE G V +I DK TGRS+GFGFV M + A
Sbjct: 1 MNIFVGSLPFSLEENELREFFEEYGEVSSVKIISDKFTGRSKGFGFVEMPDDAAAQKAID 60
Query: 152 QFNG-------YVSNKLSPKK 165
+ NG V NK KK
Sbjct: 61 ELNGAEVNGRTIVVNKSEEKK 81
>gi|327270050|ref|XP_003219804.1| PREDICTED: RNA-binding protein 24-like [Anolis carolinensis]
Length = 230
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|218885302|ref|YP_002434623.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|347730840|ref|ZP_08863950.1| RNA recognition motif family protein [Desulfovibrio sp. A2]
gi|218756256|gb|ACL07155.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|347520346|gb|EGY27481.1| RNA recognition motif family protein [Desulfovibrio sp. A2]
Length = 88
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLPFS + L LF G V+ V I D+ TGR RGFGFV M + AA +
Sbjct: 4 KLYVGNLPFSSSESDLRALFSNHGEVQSVALIMDRETGRPRGFGFVEMDD-DGARAAMEA 62
Query: 153 FNG 155
+G
Sbjct: 63 LDG 65
>gi|256823076|ref|YP_003147039.1| RNP-1 like RNA-binding protein [Kangiella koreensis DSM 16069]
gi|256796615|gb|ACV27271.1| RNP-1 like RNA-binding protein [Kangiella koreensis DSM 16069]
Length = 84
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL V NL Q+ LFE G V+ +I DK TG+S+GFGFV M + + +AA +
Sbjct: 1 MKLLVRNLDRGTTEEQVKALFEEYGTVQWCNLIMDKATGKSKGFGFVEMPKIGDAKAATK 60
Query: 152 QFNG 155
NG
Sbjct: 61 NLNG 64
>gi|2624326|emb|CAA05728.1| OsGRP1 [Oryza sativa Japonica Group]
Length = 160
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|339501141|ref|YP_004699176.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
gi|338835490|gb|AEJ20668.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
Length = 116
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVE 147
FS KL+VGNL ++ L LF G+V +I+D+ TG S+GFGFV MS+ EE
Sbjct: 20 FSMAKKLYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEAS 79
Query: 148 AAAQQFNG 155
AA NG
Sbjct: 80 AAIAGTNG 87
>gi|342882418|gb|EGU83098.1| hypothetical protein FOXB_06359 [Fusarium oxysporum Fo5176]
Length = 113
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L ++ S L F G V +V+ D+ TGRSRGFGFVT SS EE AA +
Sbjct: 3 KLFVGGLAWATTSDTLRAKFSEFGEVTDAIVMTDRETGRSRGFGFVTFSSQEEASAAIEA 62
Query: 153 FN 154
N
Sbjct: 63 MN 64
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL++G+L +++ L G+FE G +E + I D T RS+G+GFVT + ++ + A
Sbjct: 203 MKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALD 262
Query: 152 QFNGY 156
Q NG+
Sbjct: 263 QLNGF 267
>gi|168038795|ref|XP_001771885.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676836|gb|EDQ63314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L ++ D L F + G V +I D+ TGRSRGFGFV +S +E E A Q+
Sbjct: 46 KLFIGGLAWATDENTLRDAFGSFGTVTDVKIILDRDTGRSRGFGFVNFTSPQEAEVALQE 105
Query: 153 FNG 155
+G
Sbjct: 106 MDG 108
>gi|358391586|gb|EHK40990.1| hypothetical protein TRIATDRAFT_249243 [Trichoderma atroviride IMI
206040]
Length = 300
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
S P +FVGN+P+ + Q+ +F +AG VE ++YD TGR +GFGF +
Sbjct: 2 STRPPSRVVFVGNIPYGLSEEQITDIFSSAGKVERFRLVYDSETGRPKGFGFADYPDTDS 61
Query: 146 VEAAAQQFNGY 156
+A + N Y
Sbjct: 62 ASSAVRNLNEY 72
>gi|407002630|gb|EKE19334.1| RNA recognition motif-containing protein, partial [uncultured
bacterium]
Length = 56
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEE 145
KL+VG LP++ L LF AG+V +I DK+TGRS+GFGFV MSS E
Sbjct: 4 KLYVGGLPYATSEDALRDLFAQAGSVTSATIIMDKMTGRSKGFGFVEMSSDAE 56
>gi|71014136|ref|XP_758699.1| hypothetical protein UM02552.1 [Ustilago maydis 521]
gi|46098364|gb|EAK83597.1| hypothetical protein UM02552.1 [Ustilago maydis 521]
Length = 1336
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
LFVGNLPF L LF AGN++ + GRSRGFG V +S E+ + A + ++
Sbjct: 634 LFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNAVRLYH 693
Query: 155 GY 156
GY
Sbjct: 694 GY 695
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
P +L V NLP+ V L LF AG V + RSRG+G V M++ ++ AA
Sbjct: 299 PRTQLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSADNRSRGYGTVLMATEQDAIKAA 358
Query: 151 QQFNGYV 157
G+
Sbjct: 359 DLLGGFT 365
>gi|388512303|gb|AFK44213.1| unknown [Medicago truncatula]
Length = 121
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA--- 149
KLF+G L ++VD L F T G+V VI D+ TGRSRGFGF+ +S E +A
Sbjct: 12 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFINFTSEESATSALSM 71
Query: 150 -AQQFNG 155
Q NG
Sbjct: 72 DGQDLNG 78
>gi|428176294|gb|EKX45179.1| hypothetical protein GUITHDRAFT_152759 [Guillardia theta CCMP2712]
Length = 150
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
K FV LP+++ S L LF G ++ V+YD+ TGRSRGFGFVT + + EAA
Sbjct: 60 KCFVSGLPWALTSEDLRDLFAEFGAIQDANVVYDRETGRSRGFGFVTFAESADCEAA 116
>gi|340914863|gb|EGS18204.1| hypothetical protein CTHT_0062190 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 344
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 79 EDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFG 136
E+ +ED S +P LFV + ++ +++ LFE G VE ++ D TG SRGFG
Sbjct: 57 ENAPKEEDNSAVNPGSNLFVTGIHPRLEESEITRLFEKYGEVEKCQIMRDPHTGESRGFG 116
Query: 137 FVTMSSVEEVEAAAQQFNGYV 157
FV M + E+ EAA + G +
Sbjct: 117 FVKMMTSEQAEAAMEGLKGEI 137
>gi|269468289|gb|EEZ79971.1| RNA-binding protein [uncultured SUP05 cluster bacterium]
Length = 83
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K+ + NLP ++ +L LF+ G V+ +I DK TG S+GFGFV ++ V +AA Q
Sbjct: 1 MKILIRNLPRTLSENELEELFKVYGEVQSCTLILDKATGESKGFGFVEIAKVGNAKAAIQ 60
Query: 152 QFNG--YVSNKLSPKK 165
NG NK+ KK
Sbjct: 61 ALNGKPIDGNKIRVKK 76
>gi|218184292|gb|EEC66719.1| hypothetical protein OsI_33054 [Oryza sativa Indica Group]
Length = 117
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G + + D L F G V VI D+ TGRSRGFGFVT +S +E AA
Sbjct: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
Query: 153 FNGYVS 158
+G V
Sbjct: 92 MDGKVC 97
>gi|126322255|ref|XP_001376382.1| PREDICTED: RNA-binding protein 24-like [Monodelphis domestica]
gi|395511913|ref|XP_003760195.1| PREDICTED: RNA-binding protein 24 [Sarcophilus harrisii]
Length = 235
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|365091634|ref|ZP_09328989.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415945|gb|EHL23069.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 192
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAISG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|359688008|ref|ZP_09258009.1| RNP-1 like RNA-binding protein [Leptospira licerasiae serovar
Varillal str. MMD0835]
Length = 100
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L +S L +FET G ++ ++ D+ TGRSRGFGFVT AA +
Sbjct: 4 KLFVGGLSWSTTDLTLRQVFETHGAIQEANIVVDRETGRSRGFGFVTFVDQSSANAAVSE 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|347830477|emb|CCD46174.1| hypothetical protein [Botryotinia fuckeliana]
Length = 323
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P +FVGN+P+ + Q+ +F +AGNV ++YD+ TGR +GFGF + +A
Sbjct: 6 PSKSVFVGNIPYGLTEEQIIDIFSSAGNVVNFRLVYDRETGRPKGFGFAEYPDSDSAASA 65
Query: 150 AQQFNGY 156
+ N Y
Sbjct: 66 VRNLNDY 72
>gi|332019312|gb|EGI59819.1| RNA-binding protein 39 [Acromyrmex echinatior]
Length = 528
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 267 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 326
Query: 152 QFNGY 156
Q NG+
Sbjct: 327 QLNGF 331
>gi|154290312|ref|XP_001545753.1| hypothetical protein BC1G_15665 [Botryotinia fuckeliana B05.10]
Length = 322
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P +FVGN+P+ + Q+ +F +AGNV ++YD+ TGR +GFGF + +A
Sbjct: 6 PSKSVFVGNIPYGLTEEQIIDIFSSAGNVVNFRLVYDRETGRPKGFGFAEYPDSDSAASA 65
Query: 150 AQQFNGY 156
+ N Y
Sbjct: 66 VRNLNDY 72
>gi|48146631|emb|CAG33538.1| RNPC4 [Homo sapiens]
Length = 423
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+G +T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGLITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|328952775|ref|YP_004370109.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109]
gi|328453099|gb|AEB08928.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109]
Length = 97
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL+VGNL F + QL LF AG V +I D+ TG+ RGFGFV M + E A
Sbjct: 3 MKLYVGNLSFEMTEEQLGTLFSEAGPVTSAKIITDRQTGQPRGFGFVEMETKSEGRKAIS 62
Query: 152 QFNG 155
NG
Sbjct: 63 MLNG 66
>gi|326512018|dbj|BAJ95990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 830
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++V NLP+ +D+ L F+ AG V VIYD+ GRSRGFG+VTM++V+E E A + +
Sbjct: 571 VYVRNLPYHLDNEGLKLNFQHAGVVLFSKVIYDREIGRSRGFGYVTMNTVQEAEKAVRIY 630
Query: 154 NG 155
+G
Sbjct: 631 HG 632
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGR--SRGFGFVTMSSVEEVEAA 149
L++FV NLP VD+++L LF G V VIY++ G SRGFGFVTM++ EE A
Sbjct: 664 LRIFVCNLPSQVDNSRLEELFNKHGQVVDARVIYERREGASCSRGFGFVTMATDEESYKA 723
Query: 150 AQQFNGYV 157
+ N V
Sbjct: 724 IRALNKQV 731
>gi|331241775|ref|XP_003333535.1| hypothetical protein PGTG_14957 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312525|gb|EFP89116.1| small subunit ribosomal protein S19 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 206
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++ DS L F G+V +V+ D+ TGRSRGFGF+T A +
Sbjct: 33 KLFVGNLAWTTDSGSLKSAFGQFGDVVDAIVMQDRETGRSRGFGFITFKEEAAAPGAIEA 92
Query: 153 FNG 155
NG
Sbjct: 93 LNG 95
>gi|118487563|gb|ABK95608.1| unknown [Populus trichocarpa]
Length = 133
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G LP+S D L F G V VI D+ TGRSRGFGFV SVE A
Sbjct: 37 KLFIGGLPWSTDDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEALSA 96
Query: 153 FNG 155
+G
Sbjct: 97 MDG 99
>gi|221069836|ref|ZP_03545941.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714859|gb|EED70227.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 158
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+ V L F G V V+ ++ TGRS+GFGFV M+S E +AA Q
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFGQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|337281472|ref|YP_004620944.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732549|gb|AEG94925.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 159
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV + L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|224060337|ref|XP_002300149.1| predicted protein [Populus trichocarpa]
gi|222847407|gb|EEE84954.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G LP+S D L F G V VI D+ TGRSRGFGFV SVE A
Sbjct: 37 KLFIGGLPWSADDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEALSA 96
Query: 153 FNG 155
+G
Sbjct: 97 MDG 99
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLFVG L F LA F GN+ V I DK TGRSRGFGFV + E+ +
Sbjct: 2 SDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKD 61
Query: 149 AAQQFNG 155
A NG
Sbjct: 62 ALDGMNG 68
>gi|357464473|ref|XP_003602518.1| Splicing factor-like protein [Medicago truncatula]
gi|355491566|gb|AES72769.1| Splicing factor-like protein [Medicago truncatula]
Length = 766
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAA 150
D KL+VGNL F++ +QL +FE G VE+V D TG +GFGF+ + +E + AA
Sbjct: 460 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AA 518
Query: 151 QQFNG 155
Q NG
Sbjct: 519 QSLNG 523
>gi|18416114|ref|NP_568220.1| RNA-binding protein 39 [Arabidopsis thaliana]
gi|15451046|gb|AAK96794.1| splicing factor-like protein [Arabidopsis thaliana]
gi|332004077|gb|AED91460.1| RNA-binding protein 39 [Arabidopsis thaliana]
Length = 527
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 38 HKLLAKPISIS-SSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKL 96
+ +++ P++I+ S + QP+ PS +N+A S+ S G D KL
Sbjct: 217 YDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSN---------STTVGGTGPADRKL 267
Query: 97 FVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
+VGNL F++ QL +FE G VE+V D TG+ +GFGF+ +E +AA N
Sbjct: 268 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALN 327
Query: 155 G 155
G
Sbjct: 328 G 328
>gi|343429355|emb|CBQ72928.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1168
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 54 SFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
+ P P+ P F V S Q + S ++++ + LFVGNLPF L L
Sbjct: 398 AMAPWPAGPGSFGGQVTASM---QSQPFPSQVPTTSYAGRV-LFVGNLPFHCQWQDLKDL 453
Query: 114 FETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
F AGN++ + GRSRGFG V +S E+ + A + ++GY
Sbjct: 454 FRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNAVRLYHGY 497
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
P +L V NLP+ V L LF AG V + RSRG+G V M++ + AA
Sbjct: 98 PRTQLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSPDNRSRGYGTVLMATEHDAVKAA 157
Query: 151 QQFNGYV 157
G+
Sbjct: 158 DMLGGFT 164
>gi|307180960|gb|EFN68748.1| RNA-binding protein 39 [Camponotus floridanus]
Length = 529
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 268 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 327
Query: 152 QFNGY 156
Q NG+
Sbjct: 328 QLNGF 332
>gi|350410158|ref|XP_003488966.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus impatiens]
Length = 532
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 271 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 330
Query: 152 QFNGY 156
Q NG+
Sbjct: 331 QLNGF 335
>gi|342319977|gb|EGU11922.1| Telomere maintenance protein, putative [Rhodotorula glutinis ATCC
204091]
Length = 1050
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ LFVGNLPF+ +L L AGNV I GRSRGFG V +S + E A
Sbjct: 423 NRHLFVGNLPFNCQWQELKDLMRGAGNVLRADIAQGPDGRSRGFGSVLFASQGDAERAVG 482
Query: 152 QFNGY 156
FNGY
Sbjct: 483 MFNGY 487
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFV NLPF V L L G V V + GRSRGFG V + E+ A
Sbjct: 61 QLFVSNLPFRVRWQDLKDLMRKCGTVLRADVALNPTDGRSRGFGVVLFAKAEDAAKAIAT 120
Query: 153 FNGYV 157
++GY
Sbjct: 121 YHGYT 125
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL++G+L +++ L G+FE G +E + I D T RS+G+GFVT + ++ + A
Sbjct: 203 MKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALD 262
Query: 152 QFNGY 156
Q NG+
Sbjct: 263 QLNGF 267
>gi|28059803|gb|AAO30095.1| splicing factor-like protein [Arabidopsis thaliana]
Length = 527
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 38 HKLLAKPISIS-SSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKL 96
+ +++ P++I+ S + QP+ PS +N+A S+ S G D KL
Sbjct: 217 YDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSN---------STTVGGTGPADRKL 267
Query: 97 FVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
+VGNL F++ QL +FE G VE+V D TG+ +GFGF+ +E +AA N
Sbjct: 268 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALN 327
Query: 155 G 155
G
Sbjct: 328 G 328
>gi|331241781|ref|XP_003333538.1| hypothetical protein PGTG_14960 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312528|gb|EFP89119.1| hypothetical protein PGTG_14960 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 179
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNL ++ DS L F G+V +V+ D+ TGRSRGFGF+T + A +
Sbjct: 9 KLFVGNLAWTTDSGSLKSAFGQFGDVIDAIVMQDRETGRSRGFGFITFKEEADAPGAIEA 68
Query: 153 FNG 155
NG
Sbjct: 69 LNG 71
>gi|119485999|ref|ZP_01620061.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119456774|gb|EAW37902.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 157
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VGNLP ++ +L +F G+ VI D+ TG+ RGFGFVT+ + E + +
Sbjct: 3 VRLYVGNLPKELERKELQDVFVEEGDSVSAKVITDRKTGKCRGFGFVTVQTDEIADQIVE 62
Query: 152 QFNGYV 157
++NG++
Sbjct: 63 KYNGFM 68
>gi|406954527|gb|EKD83359.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 95
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNLP+S QL +F G V +I D+ TGRS+GFGFV M++ E A Q
Sbjct: 1 MNIYVGNLPYSATEEQLKTMFGVYGEVTTASIIKDRDTGRSKGFGFVEMTNDAAAEEAIQ 60
Query: 152 QFN 154
N
Sbjct: 61 ALN 63
>gi|374997451|ref|YP_004972950.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
orientis DSM 765]
gi|357215817|gb|AET70435.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
orientis DSM 765]
Length = 83
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA--AQ 151
L+VGNLP++ + +L F G VE +I D+ TGRSRGFGF+ VE+ +AA A+
Sbjct: 5 LYVGNLPWNTTAEELGEFFSAYGQVESSRIITDRETGRSRGFGFI---EVEDADAARMAE 61
Query: 152 QFNG 155
+ NG
Sbjct: 62 ELNG 65
>gi|298528161|ref|ZP_07015565.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511813|gb|EFI35715.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLP+S AQL LF G V +I D+ TGRSRGFGFV M + + A +
Sbjct: 4 LYVGNLPWSTTEAQLRDLFAEYGEVSSAKIIEDRETGRSRGFGFVEMEN--GADEAIESL 61
Query: 154 NG 155
NG
Sbjct: 62 NG 63
>gi|115489714|ref|NP_001067344.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|77557139|gb|ABA99935.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed [Oryza
sativa Japonica Group]
gi|113649851|dbj|BAF30363.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|125580173|gb|EAZ21319.1| hypothetical protein OsJ_36973 [Oryza sativa Japonica Group]
gi|215769456|dbj|BAH01685.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 162
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|302926856|ref|XP_003054377.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735318|gb|EEU48664.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 294
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEE 145
S P +FVGN+P+ + Q+ +F +AG VE ++YD TGR +GFGF +
Sbjct: 2 STRPPSRVVFVGNIPYGLTEEQITEIFSSAGKVERFRLVYDSETGRPKGFGFADYPDTDS 61
Query: 146 VEAAAQQFNGY 156
+A + N Y
Sbjct: 62 ASSAVRNLNDY 72
>gi|332529248|ref|ZP_08405212.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332041471|gb|EGI77833.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 110
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL +SV L F G+V+ V+ D+ +GRS+GFGFV M S ++ EAA +
Sbjct: 4 KLYVGNLSYSVRDDDLQQQFGAFGDVQSAKVMMDRDSGRSKGFGFVEMGSADQAEAAIRG 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|410446610|ref|ZP_11300713.1| hypothetical protein B273_0331 [SAR86 cluster bacterium SAR86E]
gi|409980282|gb|EKO37033.1| hypothetical protein B273_0331 [SAR86 cluster bacterium SAR86E]
Length = 79
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNLP+S+D A L +F G + VI D+ T RSRGFGFV MS + E A Q
Sbjct: 1 MNIYVGNLPWSIDDASLEQIFAEHGTITSAKVITDRQTNRSRGFGFVEMS--DGGENAIQ 58
Query: 152 QFN 154
N
Sbjct: 59 ALN 61
>gi|57335957|emb|CAH25380.1| putative glycine-rich RNA-binding protein [Guillardia theta]
Length = 152
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
K FV LP+++ S L LF G ++ V+YD+ TGRSRGFGFVT + + EAA
Sbjct: 62 KCFVSGLPWALTSEDLRDLFAEFGAIQDANVVYDRETGRSRGFGFVTFAESADCEAA 118
>gi|47229392|emb|CAF99380.1| unnamed protein product [Tetraodon nigroviridis]
Length = 278
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G +E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|406965367|gb|EKD91001.1| Glycine-rich RNA-binding protein [uncultured bacterium]
Length = 87
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG+LP+ VD + L F G + V+ D+ TGRSRGFGFV ++ + + A Q+
Sbjct: 7 KLFVGSLPWGVDDSGLREAFSKYGEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQE 66
Query: 153 FNG 155
NG
Sbjct: 67 MNG 69
>gi|212274941|ref|NP_001130982.1| hypothetical protein [Zea mays]
gi|194690622|gb|ACF79395.1| unknown [Zea mays]
gi|413951564|gb|AFW84213.1| hypothetical protein ZEAMMB73_909652 [Zea mays]
Length = 142
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D +LFV L +SVD L F + G V ++YDK +GRSRGFGFV S+ E + A
Sbjct: 47 DSRLFVAGLSWSVDERSLTDAFSSFGTVTEVRIMYDKNSGRSRGFGFVHFSNDNEAKCAK 106
Query: 151 QQFNGYV 157
+G V
Sbjct: 107 DAMDGKV 113
>gi|392593257|gb|EIW82582.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 136
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL +S L F G V +V+ D+ TGRSRGFGFVT ++ EE AA Q
Sbjct: 4 KLYVGNLSWSTGDDGLRNAFGRYGAVTDSIVMRDRETGRSRGFGFVTFTTAEEANAAMGQ 63
Query: 153 FN 154
+
Sbjct: 64 MD 65
>gi|225461650|ref|XP_002283115.1| PREDICTED: uncharacterized protein LOC100267539 [Vitis vinifera]
Length = 794
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D L++G LP +++ L LF G++ M VI D+VTG S+G+GFV S V++ +A
Sbjct: 494 DTNLYIGYLPPTLEDDALIRLFSPFGDIVMAKVIKDRVTGLSKGYGFVKYSDVQQANSAI 553
Query: 151 QQFNGY 156
NGY
Sbjct: 554 ASMNGY 559
>gi|407941455|ref|YP_006857096.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899249|gb|AFU48458.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 188
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|358342556|dbj|GAA49996.1| RNA-binding protein 39 [Clonorchis sinensis]
Length = 730
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL++G+L +++ L G+FE G ++ + I D TGRS+G+GFVT ++ ++ + A
Sbjct: 178 MKLYIGSLHYNITEEMLKGIFEPFGKIDDIKLIKDPATGRSQGYGFVTYANSDDAKKALD 237
Query: 152 QFNGY 156
Q NG+
Sbjct: 238 QLNGF 242
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
K++VGNL +S L F G V +V+ D+ TGRSRGFGFVT SS +E EAA
Sbjct: 4 KVYVGNLSWSTTDDTLREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAA 60
>gi|357464471|ref|XP_003602517.1| Splicing factor-like protein [Medicago truncatula]
gi|355491565|gb|AES72768.1| Splicing factor-like protein [Medicago truncatula]
Length = 731
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAA 150
D KL+VGNL F++ +QL +FE G VE+V D TG +GFGF+ + +E + AA
Sbjct: 460 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AA 518
Query: 151 QQFNG 155
Q NG
Sbjct: 519 QSLNG 523
>gi|353243833|emb|CCA75325.1| related to Transformer-2 protein [Piriformospora indica DSM 11827]
Length = 194
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEE 145
SN +P L V L L F G VE V +YD+ T RSRGFGF+ M++VEE
Sbjct: 107 SNPTPSNVLGVFGLSIRTQERDLEDEFSRFGRVEKVTIVYDQRTDRSRGFGFIVMNNVEE 166
Query: 146 VEAAAQQFNGYVS 158
Q+ NG VS
Sbjct: 167 ATRCVQELNGVVS 179
>gi|108863012|gb|ABG22105.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed [Oryza
sativa Japonica Group]
Length = 117
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
+PD+ + FVG L ++ D L F T G + +I D+ TGRSRGFGFVT SS + +
Sbjct: 3 APDVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAM 62
Query: 147 EAAAQQFNG 155
A + NG
Sbjct: 63 RDAIEGMNG 71
>gi|402875680|ref|XP_003901625.1| PREDICTED: probable RNA-binding protein 23 [Papio anubis]
Length = 497
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 318 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALE 377
Query: 152 QFNGY 156
Q NG+
Sbjct: 378 QLNGF 382
>gi|343459003|gb|AEM37660.1| cold inducible RNA binding protein [Epinephelus bruneus]
Length = 176
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLF+G L F + LA F G +E V I DK TGRSRGFGFV + ++ +
Sbjct: 2 SDEGKLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNSDDAKD 61
Query: 149 AAQQFNG 155
A + NG
Sbjct: 62 ALEGMNG 68
>gi|209155056|gb|ACI33760.1| RNA-binding protein 39 [Salmo salar]
Length = 535
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D T RS+G+GF++ + E + A +
Sbjct: 253 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETARSKGYGFISFADAECAKKALE 312
Query: 152 QFNGY 156
Q NG+
Sbjct: 313 QLNGF 317
>gi|114652057|ref|XP_001159475.1| PREDICTED: probable RNA-binding protein 23 isoform 10 [Pan
troglodytes]
Length = 442
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|383864352|ref|XP_003707643.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Megachile
rotundata]
Length = 530
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ + I D TGRS+G+GF+T + ++ + A +
Sbjct: 269 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALE 328
Query: 152 QFNGY 156
Q NG+
Sbjct: 329 QLNGF 333
>gi|418530958|ref|ZP_13096878.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
gi|371452037|gb|EHN65069.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
Length = 83
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+V NL ++VDS L F + G+V +I D+ TGRSRGFGFV M + E+ + A +
Sbjct: 5 LYVTNLSYTVDSDALRAHFGSCGDVVAADIIMDRETGRSRGFGFVEMGTQEQAQKAIETL 64
Query: 154 N 154
N
Sbjct: 65 N 65
>gi|221065733|ref|ZP_03541838.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|264678761|ref|YP_003278668.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
gi|220710756|gb|EED66124.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|262209274|gb|ACY33372.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
Length = 113
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNLP+SV + L F G V V+ D+ TGRS+GF FV M+S +E +AA
Sbjct: 4 KIYVGNLPYSVTDSSLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAISG 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|116790981|gb|ABK25812.1| unknown [Picea sitchensis]
Length = 166
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG L + VD L F T G+V +I D+ TGRSRGFGFVT +S +E AA++
Sbjct: 40 KVFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGFGFVTFASPDEANAASRP 99
Query: 153 F 153
+
Sbjct: 100 W 100
>gi|121607153|ref|YP_994960.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
gi|121551793|gb|ABM55942.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
Length = 175
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|410910980|ref|XP_003968968.1| PREDICTED: RNA-binding protein 24-like [Takifugu rubripes]
Length = 232
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G +E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|344298613|ref|XP_003420986.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Loxodonta
africana]
Length = 434
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECARRALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>gi|381206512|ref|ZP_09913583.1| RNA-binding protein [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 85
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNL FSV QL F G V VI D+V RS+GFGFV M E +A +
Sbjct: 1 MNIYVGNLAFSVSEDQLRSAFSQFGKVSKASVIMDRVNNRSKGFGFVEMDDAAEGNSAVE 60
Query: 152 QFNGY 156
NG+
Sbjct: 61 ALNGH 65
>gi|344298615|ref|XP_003420987.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Loxodonta
africana]
Length = 450
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 266 MRLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECARRALE 325
Query: 152 QFNGY 156
Q NG+
Sbjct: 326 QLNGF 330
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
Length = 110
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV + L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|340520767|gb|EGR51003.1| predicted protein [Trichoderma reesei QM6a]
Length = 307
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
S+ P +FVGN+P+ + Q+ +F +AG VE ++YD TGR +GFGF +
Sbjct: 2 SSRPPSRVVFVGNIPYGLSEEQITDIFSSAGKVERFRLVYDSETGRPKGFGFADYPDTDS 61
Query: 146 VEAAAQQFNGY 156
+A + N Y
Sbjct: 62 ASSAVRNLNEY 72
>gi|294875640|ref|XP_002767414.1| Heterogeneous nuclear ribonucleoprotein G, putative [Perkinsus
marinus ATCC 50983]
gi|239868981|gb|EER00132.1| Heterogeneous nuclear ribonucleoprotein G, putative [Perkinsus
marinus ATCC 50983]
Length = 339
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 81 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFV 138
L S DG N KLF+G +P +D +L F GN+ +V+ D++TG+ RGF +V
Sbjct: 89 LASPSDGYN---PCKLFIGGIPSDLDQGRLDQFFSQYGNIVDSVVMKDRITGKPRGFAYV 145
Query: 139 TMSSVEEVEAA 149
T S+ EE + A
Sbjct: 146 TYSTAEEAQTA 156
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
+F+G +P SVD+ ++ +++ D+VT R RGF + T S+ EE +AA NG
Sbjct: 170 VFIGGVPASVDNGNTRVQYDC-----IIMTDRVTARPRGFAYCTYSTPEEAQAAC---NG 221
Query: 156 YVSNKL 161
+N +
Sbjct: 222 GSNNSI 227
>gi|168061001|ref|XP_001782480.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666033|gb|EDQ52699.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 363
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL F++ QL +FE G VE+V D TG+S+G+GFV + +E+ AA Q
Sbjct: 73 RLYVGNLHFNMTEDQLRQVFEPFGPVELVQLPSDIETGQSKGYGFVQYARLEDARAAQQN 132
Query: 153 FNG 155
NG
Sbjct: 133 LNG 135
>gi|74153190|dbj|BAE38891.1| unnamed protein product [Mus musculus]
Length = 167
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 60 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
SPS F R A S + + + F+ K+FVG LP+ A L FE G+
Sbjct: 7 CSPSVFPRPSAAPSA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKYFEGFGD 57
Query: 120 VE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
+E +VI D+ TG+SRG+GFVTM+ + A + N + +
Sbjct: 58 IEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGR 100
>gi|410261842|gb|JAA18887.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349771|gb|JAA41489.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|219109993|ref|XP_002176749.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411284|gb|EEC51212.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 499
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
LFV +LP + A LA F GNV V DK +G S+GFGFV+ SV EAA +Q
Sbjct: 402 LFVYHLPHDLTDADLATAFNPFGNVISAKVYVDKYSGESKGFGFVSYDSVIAAEAAIEQM 461
Query: 154 NGY-VSNK 160
NG+ + NK
Sbjct: 462 NGFQIGNK 469
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 83 SDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTM 140
+D D P +KLFVG +P ++ + F++ G ++ +I DK TG RG FVT
Sbjct: 113 ADNDDGEDDP-MKLFVGQVPKAMSEEDVFPTFDSFGPLKDVAIIRDKHTGLHRGCAFVTY 171
Query: 141 SSVEEVEAAAQQFN 154
S + E A + +
Sbjct: 172 WSAADAERAQEALH 185
>gi|299529236|ref|ZP_07042680.1| RNA recognition motif-containing protein [Comamonas testosteroni
S44]
gi|298722760|gb|EFI63673.1| RNA recognition motif-containing protein [Comamonas testosteroni
S44]
Length = 83
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+V NL +S+DS L F G+V VI D+ TGRSRGFGFV M + E+ + A +
Sbjct: 5 LYVTNLGYSIDSEALRTHFGCCGDVVAADVIIDRDTGRSRGFGFVEMGTQEQAQKAIETL 64
Query: 154 N 154
N
Sbjct: 65 N 65
>gi|367054118|ref|XP_003657437.1| hypothetical protein THITE_2123146 [Thielavia terrestris NRRL 8126]
gi|347004703|gb|AEO71101.1| hypothetical protein THITE_2123146 [Thielavia terrestris NRRL 8126]
Length = 573
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 36 SSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLK 95
+ KLL P+ + QP + +R VRN S N P +
Sbjct: 250 TGQKLLGIPVIV--------QPTEAEKNRQVRNTESSGH-------------PNSVPFHR 288
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVIYDK-VTGRSRGFGFVTMSSVEEVEAAAQQFN 154
L+VGN+ FS+ L +FE G +E V K +GRSRG+GFV + A ++ N
Sbjct: 289 LYVGNIHFSITETDLQNVFEPFGELEFVQLQKDDSGRSRGYGFVQFRDAGQAREALEKMN 348
Query: 155 GY 156
G+
Sbjct: 349 GF 350
>gi|239818248|ref|YP_002947158.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239804825|gb|ACS21892.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 181
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV + L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|406835833|ref|ZP_11095427.1| RNP-1 like RNA-binding protein [Schlesneria paludicola DSM 18645]
Length = 104
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL + V +QL LF G V+ VI D+ TGRS+GFGFV MS+ + +AA
Sbjct: 4 KLYVGNLSYGVTDSQLEQLFAAHGAVQSAQVIMDRETGRSKGFGFVEMSNAADADAAITA 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L + D + L F G+V VI D+ TGRSRGFGF++ S EE +A Q
Sbjct: 41 KLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQA 100
Query: 153 FNG 155
+G
Sbjct: 101 MDG 103
>gi|410218752|gb|JAA06595.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307724|gb|JAA32462.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307728|gb|JAA32464.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>gi|388853588|emb|CCF52760.1| uncharacterized protein [Ustilago hordei]
Length = 1375
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
LFVGNLPF L LF AGN++ + GRSRGFG V +S E+ + A + ++
Sbjct: 629 LFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNAVRLYH 688
Query: 155 GY 156
GY
Sbjct: 689 GY 690
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
P +L V NLP+ V L LF AG V + RSRG+G V M++ ++ AA
Sbjct: 305 PRTQLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSADNRSRGYGTVLMATEQDAIKAA 364
Query: 151 QQFNGYV 157
G+
Sbjct: 365 DMLCGFT 371
>gi|337281471|ref|YP_004620943.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732548|gb|AEG94924.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 128
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+S + + F G V V+ ++ TGRS+GFGFV MSS E +AA +
Sbjct: 4 KLYVGNLPYSYRDSDMEQAFSQFGTVSSAKVMMERDTGRSKGFGFVEMSSPAEAQAAIEG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|162450678|ref|YP_001613045.1| RNA-binding protein [Sorangium cellulosum So ce56]
gi|161161260|emb|CAN92565.1| RNA-binding protein [Sorangium cellulosum So ce56]
Length = 309
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFE-TAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
KLFV LP S+ L LFE T GNV V D+ TGR RGFGFVT+S+ E AA +
Sbjct: 7 KLFVAGLPDSITEDVLRQLFEATGGNVVEVSLPKDRATGRPRGFGFVTLSTTGEANAARE 66
Query: 152 QFNG 155
+G
Sbjct: 67 SLDG 70
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGN---VEMVIYDKVTGRSRGFGFVTM 140
+PD L+VGNLP+ ++ GL + G V + + GR RGFGFVTM
Sbjct: 122 APDRTLYVGNLPYDASVEEVEGLIGSTGAGPVVRVHLPMDPDGRKRGFGFVTM 174
>gi|218885158|ref|YP_002434479.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756112|gb|ACL07011.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 88
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLPFS ++ LF G V V I D+ TGR RGFGFV M + + +A +
Sbjct: 5 LYVGNLPFSASEDEIRDLFSQHGQVLSVKLISDRETGRPRGFGFVEMEAA-DANSAVEAL 63
Query: 154 NGY 156
NGY
Sbjct: 64 NGY 66
>gi|410082555|ref|XP_003958856.1| hypothetical protein KAFR_0H03110 [Kazachstania africana CBS 2517]
gi|372465445|emb|CCF59721.1| hypothetical protein KAFR_0H03110 [Kazachstania africana CBS 2517]
Length = 441
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++FV NLPFSV+ L +F+ GNV V D V GRSRGFG V S+ E++ A
Sbjct: 242 FEIFVANLPFSVNWQALKDMFKPCGNVLRADVELDHV-GRSRGFGTVLFSNQEDMRRAID 300
Query: 152 QFNGY 156
+NGY
Sbjct: 301 DYNGY 305
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 79 EDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFG 136
E +S ++ +NF ++ NLPFS D + L LFET G V + YD + G
Sbjct: 353 EGYISGDERNNF-----IYCSNLPFSTDRSDLYDLFETIGKVINAELRYDSAN-QPTGVA 406
Query: 137 FVTMSSVEEVEAAAQQFNGY 156
+ ++E+ + ++ N Y
Sbjct: 407 VIEYENIEDADVCIERLNNY 426
>gi|374299435|ref|YP_005051074.1| RNP-1 like RNA-binding protein [Desulfovibrio africanus str. Walvis
Bay]
gi|332552371|gb|EGJ49415.1| RNP-1 like RNA-binding protein [Desulfovibrio africanus str. Walvis
Bay]
Length = 100
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLPFS + LF T G V V I D+ TGR RGFGFV M E A Q
Sbjct: 4 KLYVGNLPFSASEDDIRDLFSTYGEVNSVSLITDRETGRLRGFGFVEMDD-EGAREAIQS 62
Query: 153 FNG 155
+G
Sbjct: 63 LDG 65
>gi|226469234|emb|CAX70096.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 327
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL++G+L +++ L G+FE G +E + I D T RS+G+GFVT + ++ + A
Sbjct: 67 MKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALD 126
Query: 152 QFNGY 156
Q NG+
Sbjct: 127 QLNGF 131
>gi|256082942|ref|XP_002577710.1| splicing factor [Schistosoma mansoni]
gi|360043601|emb|CCD81147.1| putative splicing factor [Schistosoma mansoni]
Length = 327
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+KL++G+L +++ L G+FE G +E + I D T RS+G+GFVT + ++ + A
Sbjct: 67 MKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALD 126
Query: 152 QFNGY 156
Q NG+
Sbjct: 127 QLNGF 131
>gi|255568699|ref|XP_002525321.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223535380|gb|EEF37054.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 126
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
P+ KLFV L +SVD L F + G V ++YDK +GRSRGFGFV S E A
Sbjct: 23 PNSKLFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGFGFVNFSKENEAVCA 82
Query: 150 AQQFNG 155
+G
Sbjct: 83 KDAMDG 88
>gi|344298617|ref|XP_003420988.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Loxodonta
africana]
Length = 416
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 232 MRLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECARRALE 291
Query: 152 QFNGY 156
Q NG+
Sbjct: 292 QLNGF 296
>gi|326493798|dbj|BAJ85361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+ + FVG L ++ D L F G + +I D+ TGRSRGFGFVT S E + A
Sbjct: 4 TEYRCFVGGLAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQA 63
Query: 150 AQQFNG 155
++ NG
Sbjct: 64 IEEMNG 69
>gi|321463132|gb|EFX74150.1| hypothetical protein DAPPUDRAFT_36959 [Daphnia pulex]
Length = 88
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L F+ G +E +VI D+ TG+SRG+GFVTMS E A +
Sbjct: 7 KIFVGGLPYHTTDSSLREHFQVYGEIEEAVVITDRQTGKSRGYGFVTMSDRLAAERACKD 66
Query: 153 FN 154
N
Sbjct: 67 AN 68
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F + L G+FE G ++ + I D T RS+G+GF+T + E+ + A +
Sbjct: 365 MRLYVGSLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALE 424
Query: 152 QFNGY 156
Q NG+
Sbjct: 425 QLNGF 429
>gi|22299055|ref|NP_682302.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22295237|dbj|BAC09064.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 193
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLF-ETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
++L+VGNLP + +L LF + G V +I D+ TG+ RGFGFVT+ S E +
Sbjct: 37 VRLYVGNLPRDLSREELEALFNQEVGEVGTTKLITDRKTGKCRGFGFVTVESEEVADQVI 96
Query: 151 QQFNGY 156
++ NGY
Sbjct: 97 EKLNGY 102
>gi|238012652|gb|ACR37361.1| unknown [Zea mays]
Length = 38
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 123 VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
V+YD++TGRSRGFGFVTMSS EE AA +QF G
Sbjct: 4 VVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFRG 36
>gi|15239958|ref|NP_196239.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|9759319|dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana]
gi|17065276|gb|AAL32792.1| Unknown protein [Arabidopsis thaliana]
gi|20260002|gb|AAM13348.1| unknown protein [Arabidopsis thaliana]
gi|21593170|gb|AAM65119.1| unknown [Arabidopsis thaliana]
gi|332003601|gb|AED90984.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 146
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L F L+ F G V ++ D+V+ RS+GFGFVT +S +E + A +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 153 FNG 155
FNG
Sbjct: 95 FNG 97
>gi|47086303|ref|NP_998030.1| RNA-binding protein 24 [Danio rerio]
gi|82239979|sp|Q76LC6.1|RBM24_DANRE RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24; AltName: Full=RNA-binding protein
SEB-4
gi|45126691|dbj|BAD12194.1| RNA binding protein [Danio rerio]
gi|190337254|gb|AAI63034.1| RNA binding motif protein 24 [Danio rerio]
gi|190338707|gb|AAI63027.1| RNA binding motif protein 24 [Danio rerio]
Length = 230
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G +E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|226482446|emb|CAX73822.1| RNA binding motif protein 24 [Schistosoma japonicum]
Length = 468
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L F+ G ++ +VI D+ TG+SRG+GFVTMS E+ A +
Sbjct: 13 KIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAIRD 72
Query: 153 FNGYVSNK 160
N + +
Sbjct: 73 PNPCIDGR 80
>gi|347734520|ref|ZP_08867565.1| ss-DNA binding protein 12RNP2 [Desulfovibrio sp. A2]
gi|347516846|gb|EGY24046.1| ss-DNA binding protein 12RNP2 [Desulfovibrio sp. A2]
Length = 88
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLPFS ++ LF G V V I D+ TGR RGFGFV M + + +A +
Sbjct: 5 LYVGNLPFSASEDEIRDLFSQHGQVLSVKLISDRETGRPRGFGFVEMEAA-DASSAVEAL 63
Query: 154 NGY 156
NGY
Sbjct: 64 NGY 66
>gi|241766569|ref|ZP_04764426.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363173|gb|EER58764.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 116
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV + L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|221066816|ref|ZP_03542921.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220711839|gb|EED67207.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 83
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+V NL +S+D L F G V VI D+ TGRSRGFGFV MS+ E+ + A Q
Sbjct: 5 LYVTNLGYSIDGEALRAHFSGCGEVISADVISDRETGRSRGFGFVEMSTPEQAQKAIQTL 64
Query: 154 N 154
N
Sbjct: 65 N 65
>gi|347819854|ref|ZP_08873288.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 168
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAITG 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|270159743|ref|ZP_06188399.1| RNA binding protein [Legionella longbeachae D-4968]
gi|289165486|ref|YP_003455624.1| hypothetical protein LLO_2158 [Legionella longbeachae NSW150]
gi|269988082|gb|EEZ94337.1| RNA binding protein [Legionella longbeachae D-4968]
gi|288858659|emb|CBJ12554.1| putative N-terminal part of eukaryotic RNA-binding protein
precursor [Legionella longbeachae NSW150]
Length = 90
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
K++VGNLPF + A L F G VE ++I D+ TG +GFGF+T S+ +E E++
Sbjct: 5 KIYVGNLPFGITEAALQAEFSKYGKVEELLLIKDRFTGHVKGFGFITFSTQQEAESS 61
>gi|425765815|gb|EKV04463.1| hypothetical protein PDIG_89590 [Penicillium digitatum PHI26]
gi|425765816|gb|EKV04464.1| hypothetical protein PDIG_89600 [Penicillium digitatum PHI26]
gi|425783904|gb|EKV21721.1| hypothetical protein PDIP_03860 [Penicillium digitatum Pd1]
Length = 298
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 59 PSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFS-----PDLKLFVGNLPFSVDSAQLAGL 113
P P R+V +V ++ L E + P L+VGNL F V + L
Sbjct: 25 PRIPVRYVESVRPQQSKSEQIRLQRHERRRQYVSEGPVPKTTLYVGNLFFDVTAEDLRKH 84
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE-VEAAAQQFNGYVSNK 160
FE G VE ++++D G S+GFG+VT S++EE EA QQ G + +
Sbjct: 85 FEKFGVVENALIVHD-ARGLSKGFGYVTYSTIEEATEAITQQHGGILEGR 133
>gi|321443204|gb|EFX60016.1| hypothetical protein DAPPUDRAFT_39159 [Daphnia pulex]
Length = 91
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L F GN+E +VI D+ TG+SRG+GFVTM + E + A +
Sbjct: 6 KIFVGGLPYHTTDETLKAFFLKFGNIEEAVVITDRQTGKSRGYGFVTMETPEAAQNAIRD 65
Query: 153 FNGYVSNK 160
N + +
Sbjct: 66 PNPIIDGR 73
>gi|432908497|ref|XP_004077890.1| PREDICTED: RNA-binding protein 24-like isoform 2 [Oryzias latipes]
Length = 121
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 13 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACKD 72
Query: 153 FNGYVSNK 160
N + +
Sbjct: 73 PNPIIDGR 80
>gi|115481496|ref|NP_001064341.1| Os10g0321700 [Oryza sativa Japonica Group]
gi|110288867|gb|ABG66004.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638950|dbj|BAF26255.1| Os10g0321700 [Oryza sativa Japonica Group]
Length = 317
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G + + D L F G V VI D+ TGRSRGFGFVT +S +E AA
Sbjct: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
Query: 153 FNG 155
+G
Sbjct: 92 MDG 94
>gi|256828609|ref|YP_003157337.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
gi|256577785|gb|ACU88921.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
Length = 85
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNL +S A L LF G V VI D+ TGRSRGFGFV M E A Q
Sbjct: 1 MNIYVGNLSWSTTDADLKSLFSQYGEVTSAHVIEDRATGRSRGFGFVEMDD-EGARKAIQ 59
Query: 152 QFNG 155
NG
Sbjct: 60 AVNG 63
>gi|114652069|ref|XP_001159523.1| PREDICTED: probable RNA-binding protein 23 isoform 11 [Pan
troglodytes]
Length = 426
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|449704866|gb|EMD45026.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 414
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAA 149
+FVGNLPF ++ QL LF AG +E V + + +G RG GFVT ++ E+V+
Sbjct: 284 IFVGNLPFKMEEEQLRKLFSKAGEIERVKIVRESKSGMGRGIGFVTFTNKEDVQKG 339
>gi|410218750|gb|JAA06594.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307726|gb|JAA32463.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|319765041|ref|YP_004128978.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827233|ref|YP_004390536.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
gi|317119602|gb|ADV02091.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312605|gb|AEB87020.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
Length = 116
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+S L F G+V+ V+ ++ TGRS+GFGFV M S E +AA Q
Sbjct: 4 KLYVGNLPYSFRDQDLEQTFSQYGSVQSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 153 FNG 155
+G
Sbjct: 64 AHG 66
>gi|67477043|ref|XP_654040.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56471058|gb|EAL48654.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 414
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAA 149
+FVGNLPF ++ QL LF AG +E V + + +G RG GFVT ++ E+V+
Sbjct: 284 IFVGNLPFKMEEEQLRKLFSKAGEIERVKIVRESKSGMGRGIGFVTFTNKEDVQKG 339
>gi|414587608|tpg|DAA38179.1| TPA: hypothetical protein ZEAMMB73_126317 [Zea mays]
Length = 750
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L++G LP ++D A L LF G + M VI D+ TG+S+G+GFV S V + AA
Sbjct: 429 LYIGYLPPTMDDAGLVSLFSQFGEIVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIAAM 488
Query: 154 NGY 156
NG+
Sbjct: 489 NGH 491
>gi|398810631|ref|ZP_10569445.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398082488|gb|EJL73237.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 179
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|353235522|emb|CCA67534.1| related to glycine-rich RNA-binding protein [Piriformospora indica
DSM 11827]
Length = 236
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++VGNL ++ L F GNV +V+ D+ TGRSRGFGFVT SS EE A
Sbjct: 4 KIYVGNLSWNTTDDTLREAFRQYGNVVDSIVMRDRETGRSRGFGFVTYSSEEEASNAISG 63
Query: 153 FN 154
N
Sbjct: 64 LN 65
>gi|346324388|gb|EGX93985.1| Nucleotide-binding, alpha-beta plait [Cordyceps militaris CM01]
Length = 284
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEE 145
S P +FVGN+P+ + Q+ +F AG VE ++YD TGR +GFGF +
Sbjct: 2 STRPPSRVVFVGNIPYGLSEEQITDIFSDAGKVERFRLVYDSETGRPKGFGFAEYPDTDS 61
Query: 146 VEAAAQQFNGY 156
+A + N Y
Sbjct: 62 ASSAVRNLNDY 72
>gi|319796634|ref|YP_004158274.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315599097|gb|ADU40163.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 189
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|76157398|gb|AAX28335.2| SJCHGC05136 protein [Schistosoma japonicum]
Length = 184
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ L F+ G ++ +VI D+ TG+SRG+GFVTMS E+ A +
Sbjct: 13 KIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAIRD 72
Query: 153 FNGYVSNK 160
N + +
Sbjct: 73 PNPCIDGR 80
>gi|410261840|gb|JAA18886.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349769|gb|JAA41488.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349773|gb|JAA41490.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 247 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALE 306
Query: 152 QFNGY 156
Q NG+
Sbjct: 307 QLNGF 311
>gi|332858732|ref|XP_001170164.2| PREDICTED: RNA-binding protein 38 [Pan troglodytes]
Length = 216
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTM 140
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM
Sbjct: 12 KIFVGGLPYHTPDASLRKYFEGFGAIEEAVVITDRQTGKSRGYGFVTM 59
>gi|327289313|ref|XP_003229369.1| PREDICTED: probable RNA-binding protein 23-like [Anolis
carolinensis]
Length = 445
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L ++ L G+FE G ++ ++ D+ TG+S+G+GF+T S E A +
Sbjct: 266 MRLYVGSLHCNITKEMLRGIFEPFGKIDSIVLMRDQDTGQSKGYGFITFSEAECARRALE 325
Query: 152 QFNGY 156
Q NG+
Sbjct: 326 QLNGF 330
>gi|209735756|gb|ACI68747.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 81
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLFVG L F LA F GN+ V I DK TGRSRGFGFV + E+ +
Sbjct: 2 SDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKD 61
Query: 149 AAQQFNG 155
A + NG
Sbjct: 62 ALEGMNG 68
>gi|397505333|ref|XP_003823221.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 24 [Pan
paniscus]
Length = 236
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG P+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGXPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|390359786|ref|XP_003729564.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like
[Strongylocentrotus purpuratus]
Length = 220
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FV NLP + D ++ LFET G + V + +K +G SRGFGF+T + E+ A Q
Sbjct: 17 KIFVSNLPKTWDEGRMEKLFETFGKISQVNLMKNKESGDSRGFGFITFDTAEDANDAIQG 76
Query: 153 FNG 155
NG
Sbjct: 77 MNG 79
>gi|357462205|ref|XP_003601384.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355490432|gb|AES71635.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 135
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L +SVD L F + G+V ++YDK +GR+RGFGFV S+ + ++A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 153 FNG 155
+G
Sbjct: 97 MDG 99
>gi|159474566|ref|XP_001695396.1| RNA-binding protein [Chlamydomonas reinhardtii]
gi|158275879|gb|EDP01654.1| RNA-binding protein [Chlamydomonas reinhardtii]
Length = 704
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 89 NFSPD-LKLFVGNLPFSVDSAQLAGLFETAGNV-EMVI-YDKVTGRSRGFGFVTMSSVEE 145
+PD +KLFVGN+P S QL LF++ G V E+VI YDKVT S+G FV ++ +
Sbjct: 314 GCAPDAMKLFVGNIPKSCTEDQLLPLFQSIGKVVELVIVYDKVTHESKGSAFVWYANRAD 373
Query: 146 VEAAAQQFN 154
E A QFN
Sbjct: 374 AERAIIQFN 382
>gi|383765116|ref|YP_005444097.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
gi|381385384|dbj|BAM02200.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
Length = 166
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTM 140
+ +++GNLP+ A LA LF G VE ++ D+ TGRSRGFGFV M
Sbjct: 2 INIYIGNLPYKTGEADLADLFSRFGTVERATIVKDRDTGRSRGFGFVEM 50
>gi|115473215|ref|NP_001060206.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|113611742|dbj|BAF22120.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|222637411|gb|EEE67543.1| hypothetical protein OsJ_25023 [Oryza sativa Japonica Group]
Length = 238
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L ++ D L +F G+V +I D+ TG+S+G+GF+T +S EE AA
Sbjct: 32 KLFVGGLSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAVTA 91
Query: 153 FNG 155
+G
Sbjct: 92 MDG 94
>gi|432883399|ref|XP_004074265.1| PREDICTED: RNA-binding protein 24-like [Oryzias latipes]
Length = 232
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G +E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>gi|392332853|ref|XP_003752716.1| PREDICTED: regulator of G-protein signaling protein-like [Rattus
norvegicus]
Length = 1173
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT S VEEV+AA
Sbjct: 730 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 786
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + L FE G +E V+ D+ +G+ RGF FVT + V+ Q
Sbjct: 821 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 880
Query: 153 ----FNGY 156
NG+
Sbjct: 881 KYHTINGH 888
>gi|218202644|gb|EEC85071.1| hypothetical protein OsI_32418 [Oryza sativa Indica Group]
Length = 821
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 89 NFSP-DLKLFVGNLPFSVDSAQLAGLFETAGNV---EMVIYDKVTGRSRGFGFVTMSSVE 144
+FSP D ++VGNL + VD +L F G V ++V Y + TGRSRGFGFV+M+++
Sbjct: 523 SFSPKDFSIYVGNLRWDVDRLRLLKFFGEHGRVLVAQVVCY-RQTGRSRGFGFVSMATLR 581
Query: 145 EVEAAAQQFNG 155
E + NG
Sbjct: 582 EPDDVIASLNG 592
>gi|195393638|ref|XP_002055460.1| GJ18781 [Drosophila virilis]
gi|194149970|gb|EDW65661.1| GJ18781 [Drosophila virilis]
Length = 88
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
++FVGNLP++V +L G F+ G V VI+DK TG S+G+GFV+ +S++ +E
Sbjct: 14 RIFVGNLPWTVGHQELRGYFKEFGRVVNANVIFDKKTGCSKGYGFVSFNSLQALE 68
>gi|66576254|gb|AAY51685.1| RNA-binding protein [Chlorobium tepidum TLS]
Length = 90
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ +++GNL ++V A L+G F G V VI DK TGRS+GFGFV M E A
Sbjct: 1 MNIYIGNLDYNVTEADLSGAFGEFGTVSKANVIIDKFTGRSKGFGFVEMPDDAEANEAIS 60
Query: 152 QFN 154
Q N
Sbjct: 61 QLN 63
>gi|406929710|gb|EKD65230.1| RNA-binding protein [uncultured bacterium]
Length = 95
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFVG L + QL F AG V I D+ +G+ +GFGFV M++ EE + A QQ
Sbjct: 4 RLFVGRLSYGTTDEQLEQHFSQAGKVISAKAIVDRYSGQGKGFGFVEMATAEEAQKAIQQ 63
Query: 153 FN 154
N
Sbjct: 64 LN 65
>gi|333993552|ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|333734416|gb|AEF80365.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
Length = 100
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL + L LF GNV +I+D+ +G S+GFGF+ MS+ EE AA
Sbjct: 4 KLYVGNLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITG 63
Query: 153 FNGY 156
NG+
Sbjct: 64 TNGH 67
>gi|255930353|ref|XP_002556736.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581349|emb|CAP79122.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 140
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAA-- 150
KLF+G L ++ D L FE G VE V+ D+ TGRSRGFGFV S+ +E AA
Sbjct: 3 KLFIGGLSWNTDDNSLRQRFEEFGVVEDATVVKDRDTGRSRGFGFVRFSTDDEATAAMNA 62
Query: 151 ---QQFNG 155
Q+F+G
Sbjct: 63 MNNQEFDG 70
>gi|119944565|ref|YP_942245.1| RNP-1 like RNA-binding protein [Psychromonas ingrahamii 37]
gi|119863169|gb|ABM02646.1| RNP-1 like RNA-binding protein [Psychromonas ingrahamii 37]
Length = 89
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K+ V NL + +L LF G V+ ++ DKVTG+S+GFGFV M V E +AA +
Sbjct: 1 MKILVRNLAAATTEEKLNSLFIEYGTVQSCSLVLDKVTGKSKGFGFVEMPKVGEAKAAMK 60
Query: 152 QFNGY 156
NGY
Sbjct: 61 TLNGY 65
>gi|407036329|gb|EKE38119.1| RNA recognition motif (RRM, RBD, or RNP domain) containing protein
[Entamoeba nuttalli P19]
Length = 413
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAA 149
+FVGNLPF ++ QL LF AG +E V + + +G RG GFVT ++ E+V+
Sbjct: 283 IFVGNLPFKMEEEQLRKLFSKAGEIERVKIVRESKSGMGRGIGFVTFTNKEDVQKG 338
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
KL+V NL +S+ +A + LF +G V ++ I GRS+G+ FVTM+S EE +AA +F
Sbjct: 81 KLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKF 140
Query: 154 NGY 156
+ Y
Sbjct: 141 DSY 143
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE-----MVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
++ NL + S L LF A N + V++D +GRS G+GFV+ + E+ EAA
Sbjct: 179 IYASNLAWKARSTHLRQLF--AENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAI 236
Query: 151 QQFNG 155
+G
Sbjct: 237 STVDG 241
>gi|89074506|ref|ZP_01160983.1| hypothetical RNA-binding protein [Photobacterium sp. SKA34]
gi|89049794|gb|EAR55344.1| hypothetical RNA-binding protein [Photobacterium sp. SKA34]
Length = 156
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLP+ + + LF G+V V + DK TG+ RGFGFV MSS+ + ++A +Q
Sbjct: 69 LYVGNLPYRANETDVKNLFAEHGDVFAVRLMKDKRTGKRRGFGFVVMSSL-DADSAIEQL 127
Query: 154 N 154
N
Sbjct: 128 N 128
>gi|414883566|tpg|DAA59580.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 277
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K++ GNL + V + L +FE + VI+++ TGRSRGFGFV+ S+ E+ +AA +
Sbjct: 148 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 207
Query: 153 FNG 155
+G
Sbjct: 208 LDG 210
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 123 VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
+IYDKVT RSRGF FVTM++ EE A Q F+G
Sbjct: 79 IIYDKVTNRSRGFAFVTMATAEEAAKAIQMFDG 111
>gi|195134917|ref|XP_002011883.1| GI14443 [Drosophila mojavensis]
gi|193909137|gb|EDW08004.1| GI14443 [Drosophila mojavensis]
Length = 88
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
++FVGNLP++V +L G F+ G V VI+DK TG S+G+GFV+ +S++ +E
Sbjct: 14 RIFVGNLPWTVGHQELRGYFKEFGRVLNANVIFDKKTGCSKGYGFVSFNSLQALE 68
>gi|114652071|ref|XP_522797.2| PREDICTED: probable RNA-binding protein 23 isoform 12 [Pan
troglodytes]
Length = 408
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TG S+G+GF+T S E A +
Sbjct: 229 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALE 288
Query: 152 QFNGY 156
Q NG+
Sbjct: 289 QLNGF 293
>gi|728594|emb|CAA88558.1| glycine rich protein, RNA binding protein [Hordeum vulgare subsp.
vulgare]
Length = 173
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+ + FVG L ++ D L F G + +I D+ TGRSRGFGFVT S E + A
Sbjct: 4 TEYRCFVGGLAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQA 63
Query: 150 AQQFNG 155
++ NG
Sbjct: 64 IEEMNG 69
>gi|344299844|gb|EGW30197.1| hypothetical protein SPAPADRAFT_63810 [Spathaspora passalidarum
NRRL Y-27907]
Length = 433
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
P ++FVGNLPFS++ L L AG+V + G+SRGFG V + EE A
Sbjct: 227 PGCEIFVGNLPFSINWQALKDLMRKAGDVIRADVRMDNWGKSRGFGTVVFGTEEEANKAV 286
Query: 151 QQFNGY 156
+ F GY
Sbjct: 287 EMFQGY 292
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVT--GRSRGFGFVTMSSVEEVEAAA 150
D +F+GN+PF +A +F + + +V D VT GRSRG + ++ E+V +A
Sbjct: 110 DNSIFIGNIPFDCSDKDVADIF--SKDFTIVRSDIVTNRGRSRGMATIEFNNKEDVRSAI 167
Query: 151 QQFN 154
++F+
Sbjct: 168 EKFD 171
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
++V NLPF+ + L LFET G +I D +TGR G V E + A +
Sbjct: 353 IYVSNLPFATQNDDLFELFETVGRTTKAEIILDPITGRPSGNAVVQFELAELSDNAIENL 412
Query: 154 NGYV 157
N Y+
Sbjct: 413 NNYL 416
>gi|2267593|gb|AAB63589.1| glycine-rich RNA-binding protein [Oryza sativa Indica Group]
Length = 165
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D + FVG L ++ D+ L F T G + +I D+ TGRSRGFGFVT SS + + A
Sbjct: 7 DYRCFVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAI 66
Query: 151 QQFNG 155
+ +G
Sbjct: 67 EGMSG 71
>gi|357152879|ref|XP_003576265.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 165
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+ + FVG L ++ D L F G + +I D+ TGRSRGFGFVT ++ E ++AA
Sbjct: 2 DEYRCFVGGLAWATDDHNLQSAFSNFGEILDAKIIQDRETGRSRGFGFVTFATEESMQAA 61
Query: 150 AQQFNG 155
+ NG
Sbjct: 62 IEGMNG 67
>gi|443695245|gb|ELT96187.1| hypothetical protein CAPTEDRAFT_148377 [Capitella teleta]
Length = 277
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+F+ G ++ + + + TGRS+G+GF+T + E+ + A +
Sbjct: 1 MRLYVGSLHFNITEEMLRGIFDPFGKIDDIKLMKNHETGRSQGYGFITFHTAEDAKKALE 60
Query: 152 QFNGY 156
Q NG+
Sbjct: 61 QLNGF 65
>gi|338175402|ref|YP_004652212.1| hypothetical protein PUV_14080 [Parachlamydia acanthamoebae UV-7]
gi|336479760|emb|CCB86358.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 111
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVGNL + V L +FE G V +I D+ TG+S+GFGFV M S E+ + A ++
Sbjct: 4 KIFVGNLSWKVTDDILRSVFEKIGKVVSVKIITDQYTGKSKGFGFVEMESSEDADKAIRE 63
Query: 153 FN 154
N
Sbjct: 64 LN 65
>gi|449437591|ref|XP_004136575.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Cucumis sativus]
gi|449501907|ref|XP_004161491.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Cucumis sativus]
Length = 335
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLFV L ++ S L F G +E VIYDK TG+SRG+GF+T +E +AA
Sbjct: 66 KLFVRGLAWNTTSETLCAAFSVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTKAA 122
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 87 GSNFSPDL---KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMS 141
GS+ +PDL KL++G L + S L F G++E V YDK T SRGFGFVT +
Sbjct: 146 GSSTTPDLAQRKLYIGGLSPDITSEVLLNFFGRYGDIEEGSVAYDKDTNESRGFGFVTYT 205
Query: 142 SVEEVEAA 149
+ E + A
Sbjct: 206 TAEAAKKA 213
>gi|401423936|ref|XP_003876454.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492696|emb|CBZ27973.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 219
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLFVG LPF +L LF GNVE + I + RSRG F+T+S+V+E + A
Sbjct: 103 KLFVGQLPFECTEERLRNLFSAYGNVEHIHILRDNSNRSRGAAFITLSTVQEADTA 158
>gi|339898549|ref|XP_001470498.2| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|321398392|emb|CAM68874.2| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 221
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLFVG LPF +L LF GNVE + I + RSRG F+T+S+V+E + A
Sbjct: 105 KLFVGQLPFECTEERLRNLFSAYGNVEHIHILRDNSNRSRGAAFITLSTVQEADTA 160
>gi|449540824|gb|EMD31812.1| hypothetical protein CERSUDRAFT_88684 [Ceriporiopsis subvermispora
B]
Length = 292
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+FVG L ++VD+ LA F G V V D+ TG+SRGFG+VT ++VE V+AA Q
Sbjct: 46 IFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTFATVEAVDAAIAQ- 104
Query: 154 NG 155
NG
Sbjct: 105 NG 106
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
LFVGNL + L F G+++ V D+ TG+ +GF +V S ++EA+ + F
Sbjct: 146 LFVGNLSWDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFS---DIEASKKAF 202
Query: 154 NGYVSNKLSPK 164
G +++ +
Sbjct: 203 EGAAGAEVAGR 213
>gi|225156280|ref|ZP_03724758.1| RNP-1 like RNA-binding protein [Diplosphaera colitermitum TAV2]
gi|224803012|gb|EEG21257.1| RNP-1 like RNA-binding protein [Diplosphaera colitermitum TAV2]
Length = 106
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL F+ A L F T G + V D+ TGR RGF FVT + EE + A ++
Sbjct: 4 KLYVGNLSFNTSEADLRTAFSTCGTLTDVFLATDRETGRPRGFAFVTFDTAEESQLATEK 63
Query: 153 FNG 155
NG
Sbjct: 64 LNG 66
>gi|398017101|ref|XP_003861738.1| hypothetical protein, conserved [Leishmania donovani]
gi|322499965|emb|CBZ35039.1| hypothetical protein, conserved [Leishmania donovani]
Length = 221
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLFVG LPF +L LF GNVE + I + RSRG F+T+S+V+E + A
Sbjct: 105 KLFVGQLPFECTEERLRNLFSAYGNVEHIHILRDNSNRSRGAAFITLSTVQEADTA 160
>gi|336272443|ref|XP_003350978.1| hypothetical protein SMAC_04282 [Sordaria macrospora k-hell]
gi|380090745|emb|CCC04915.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 192
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA--- 149
KLFVG L ++ D L FE G VE +V+ D+ TGRSRGFGFV ++ + E A
Sbjct: 3 KLFVGGLSWNTDDNMLRAKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYANDADAENAIAN 62
Query: 150 --AQQFNG 155
Q+F+G
Sbjct: 63 MDGQEFDG 70
>gi|432112552|gb|ELK35268.1| Heterogeneous nuclear ribonucleoprotein A1 [Myotis davidii]
Length = 168
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G L F L FE G + +V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 74 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 133
Query: 153 FNGYVSNK-LSPKK 165
V + + PK+
Sbjct: 134 RPHKVDGRVVEPKR 147
>gi|78356222|ref|YP_387671.1| RNP-1 like RNA-binding protein [Desulfovibrio alaskensis G20]
gi|78218627|gb|ABB37976.1| RNP-1 like RNA-binding protein [Desulfovibrio alaskensis G20]
Length = 114
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNL + + L G FE G V+ V I D TGRS+GFGFV M+ E AA +
Sbjct: 1 MNIYVGNLSYQMSEDDLRGAFEEFGAVDKVRIITDHDTGRSKGFGFVEMAEDSEANAAIE 60
Query: 152 QFNG 155
NG
Sbjct: 61 ALNG 64
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G+V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|291410921|ref|XP_002721736.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 269
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+LF+G L F + L FE G + MV+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 RLFIGGLSFETTNESLRSHFEQWGTLTDCMVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + L FE G +E++ + D+ +G+ RGF FVT + V+ Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
>gi|282890465|ref|ZP_06298988.1| hypothetical protein pah_c022o030 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499462|gb|EFB41758.1| hypothetical protein pah_c022o030 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 113
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVGNL + V L +FE G V +I D+ TG+S+GFGFV M S E+ + A ++
Sbjct: 6 KIFVGNLSWKVTDDILRSVFEKIGKVVSVKIITDQYTGKSKGFGFVEMESSEDADKAIRE 65
Query: 153 FN 154
N
Sbjct: 66 LN 67
>gi|90581104|ref|ZP_01236904.1| hypothetical RNA-binding protein [Photobacterium angustum S14]
gi|90437800|gb|EAS62991.1| hypothetical RNA-binding protein [Vibrio angustum S14]
Length = 156
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLP+ + + LF G+V V + DK TG+ RGFGFV MSS+ + ++A +Q
Sbjct: 69 LYVGNLPYRANETDVKNLFAEHGDVFAVRLMKDKRTGKRRGFGFVVMSSL-DADSAIEQL 127
Query: 154 N 154
N
Sbjct: 128 N 128
>gi|406867619|gb|EKD20657.1| RNA recognition motif containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 339
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEA 148
+P +FVGN+P+ + Q+ +F TAG V ++YD+ TGR +GFGFV + +
Sbjct: 4 APSKSVFVGNIPYGLTEEQIIRIFSTAGKVLNFRLVYDRETGRPKGFGFVEFPDSDSAAS 63
Query: 149 AAQQFNGY 156
A + N +
Sbjct: 64 AVRNLNDH 71
>gi|255945691|ref|XP_002563613.1| Pc20g11240 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588348|emb|CAP86453.1| Pc20g11240 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 356
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 21/162 (12%)
Query: 2 STTSASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSS 61
S+ + SS VL S P + F + PT +S++ PI +I S QP
Sbjct: 46 SSVTPSSAVLRSTCPTPMRF--AYPTIAQTRLNSTNGDGQRTPIR----YIESVQPPRPD 99
Query: 62 PSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE 121
+R + ++ LL++ P L+VGNL F V + L FE G VE
Sbjct: 100 QARL-------QKLERPRPLLNE----GPVPKSTLYVGNLFFDVTAEDLRKHFEKYGAVE 148
Query: 122 --MVIYDKVTGRSRGFGFVTMSSVEE-VEAAAQQFNGYVSNK 160
++++D G S+GFG+VT S+VEE +A QQ G + +
Sbjct: 149 NALIVHD-ARGLSKGFGYVTFSTVEEATQAITQQHGGILEGR 189
>gi|388853710|emb|CCF52678.1| related to HRB1-Poly(A+) RNA-binding protein, involved in the
export of mRNAs from the nucleus to the cytoplasm
[Ustilago hordei]
Length = 514
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
++FV NLP+S + L LF+T G VE GRS+G G V +SV++ E A +FN
Sbjct: 393 QIFVKNLPWSTSNEDLVELFQTTGKVEEAEIQFDHGRSKGTGVVQFASVDDAETAIAKFN 452
Query: 155 GYV 157
YV
Sbjct: 453 NYV 455
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYD-KVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+LF+ NLPF V L LF +AGNV + GRS+G G V ++ + A +
Sbjct: 215 QLFITNLPFDVSWQDLKDLFRSAGNVTRADVNMGPDGRSKGTGIVAFANSNDASNAIAMY 274
Query: 154 NGY 156
+GY
Sbjct: 275 HGY 277
>gi|224137878|ref|XP_002322674.1| predicted protein [Populus trichocarpa]
gi|222867304|gb|EEF04435.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLFV L ++ S L F+ G +E VIYDK TG+SRG+GF+T +E ++A
Sbjct: 69 KLFVRGLAWNTTSETLCAAFQMHGEIEEGAVIYDKATGKSRGYGFITYKHMESAQSA 125
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 87 GSNFSPDL---KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMS 141
G++ +PDL KL+VG L + S L F G++E V YDK T SRGFGFVT
Sbjct: 149 GASTTPDLAQRKLYVGGLSPEISSEMLLNFFGRYGDIEEGSVAYDKDTNESRGFGFVTYK 208
Query: 142 SVEEVEAA 149
+VE + A
Sbjct: 209 TVEAAKKA 216
>gi|297811089|ref|XP_002873428.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319265|gb|EFH49687.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 520
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAA 150
D KL+VGNL F++ QL +FE G VE+V D TG+ +GFGF+ + +E +AA
Sbjct: 257 DRKLYVGNLHFNMTELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFAQLEHSKAAQ 316
Query: 151 QQFNG 155
NG
Sbjct: 317 ISLNG 321
>gi|297793663|ref|XP_002864716.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
gi|297310551|gb|EFH40975.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
Length = 327
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G + +S+D L F G V VI D+ TGRSRGFGFVT +S E +A Q
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVETRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 LDG 103
>gi|121606987|ref|YP_984316.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120595956|gb|ABM39395.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 152
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M+S E +AA
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D L+V LP ++ L GLFE G + +++D VTG+SRG GFV E E A
Sbjct: 108 DANLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAI 167
Query: 151 QQFNGYV 157
+ NG++
Sbjct: 168 TELNGHI 174
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 96 LFVGNL-PFSVDSA--QLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+FV NL P + DS QL G F NV+ VI D T + +GFGFVTM+ +E A Q
Sbjct: 245 IFVYNLAPDTEDSVLWQLFGPFGAVTNVK-VIRDFQTNKCKGFGFVTMAHYDEAVVAIAQ 303
Query: 153 FNGYV 157
NGY
Sbjct: 304 LNGYC 308
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L V LP ++ ++ LF + G VE +I DKVTG+S G+GFV ++ E A
Sbjct: 25 LIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKAINTL 84
Query: 154 NG 155
NG
Sbjct: 85 NG 86
>gi|406994267|gb|EKE13283.1| hypothetical protein ACD_13C00045G0007 [uncultured bacterium]
Length = 134
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+LFV LPFS +L LF +G V VI DK+TG+S+GFGFV M + EE A
Sbjct: 4 RLFVAGLPFSTTQDELKTLFSESGTVVSATVIMDKMTGQSKGFGFVEMETTEEAAKAISS 63
Query: 153 FN 154
N
Sbjct: 64 LN 65
>gi|71895177|ref|NP_001026424.1| heterogeneous nuclear ribonucleoprotein A1 [Gallus gallus]
gi|53130302|emb|CAG31480.1| hypothetical protein RCJMB04_6o1 [Gallus gallus]
Length = 368
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT SSVEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVEEVDAA 71
>gi|327398778|ref|YP_004339647.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
gi|327181407|gb|AEA33588.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
Length = 86
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L+VGNLP+S +L LF G V +I D+ TGRSRGFGFV MS ++ + A
Sbjct: 5 LYVGNLPYSTTEDELKELFGEYGEVSSTKIITDRETGRSRGFGFVEMSD-DDAQKAIDSL 63
Query: 154 NG 155
NG
Sbjct: 64 NG 65
>gi|294897114|ref|XP_002775830.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239882183|gb|EER07646.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 323
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVE----- 147
+LFVG +P + F G+VE +V+ DK+TGR RGFGFVT S+ +EVE
Sbjct: 79 QLFVGGIPEGITDDGFHQYFSQFGHVERAIVMTDKMTGRCRGFGFVTYSTTDEVEVVIMK 138
Query: 148 AAAQQFNG 155
Q NG
Sbjct: 139 GGPHQLNG 146
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+K+F G L ++ S +L F GN+ + + D+ TGRS+G+GFVT S + V AA
Sbjct: 182 MKVFCGGLQSTLSSERLRQHFSQYGNIVDCIAMRDRDTGRSKGYGFVTFDSEDAVAAA 239
>gi|189499100|ref|YP_001958570.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189494541|gb|ACE03089.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 90
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAA 149
+ +++GNLP+S+ +L+ F G V+ +I DK TGRS+GFGFV M + +E + A
Sbjct: 1 MNIYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNA 58
>gi|15239505|ref|NP_200911.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
gi|9759450|dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana]
gi|16974556|gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|21928059|gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|225879144|dbj|BAH30642.1| hypothetical protein [Arabidopsis thaliana]
gi|332010031|gb|AED97414.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
Length = 309
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G + +S+D L F G V VI D+ TGRSRGFGFVT +S E +A Q
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 LDG 103
>gi|387016398|gb|AFJ50318.1| HNRPA1 protein [Crotalus adamanteus]
Length = 212
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT S+VEEV+AA
Sbjct: 28 KLFIGGLSFETTDESLRNHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVDAA 84
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + L FE G +E++ + D+ +G+ RGF FVT + V+ Q
Sbjct: 119 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 178
>gi|388494768|gb|AFK35450.1| unknown [Medicago truncatula]
Length = 176
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G + +S D L F G+V +I D+ TGRSRGFGF+T ++ EE +A Q
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 153 FN 154
+
Sbjct: 101 MD 102
>gi|353241446|emb|CCA73260.1| related to Transformer-2 protein homolog [Piriformospora indica DSM
11827]
Length = 257
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
+P L V L +DS +L +F G V+ V+YD + SRGFGFVTM +VE+ +A
Sbjct: 92 NPGNNLHVSGLSSRIDSRELEAIFAKVGKVKKASVMYDPHSRESRGFGFVTMETVEDADA 151
Query: 149 AAQQFN 154
A Q N
Sbjct: 152 AISQLN 157
>gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L + D + L F G V VI D+ TGRSRGFGF++ S EE +A Q
Sbjct: 41 KLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAMQA 100
Query: 153 FNG 155
+G
Sbjct: 101 MDG 103
>gi|326515712|dbj|BAK07102.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 104
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+ FVG L ++ D L F G+V +I D+ TGRSRGFGFVT +S E + A +
Sbjct: 7 RCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 153 FNG 155
NG
Sbjct: 67 MNG 69
>gi|432843238|ref|XP_004065582.1| PREDICTED: RNA-binding protein 34-like [Oryzias latipes]
Length = 421
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSV 143
DGS+ +FVGNLPF + FET G VE V + DK +G +GFG+V S
Sbjct: 256 DGSSHDHKRSVFVGNLPFDIHEQAFRKHFETCGTVEAVRLVRDKDSGLGKGFGYVLFESA 315
Query: 144 EEVEAA 149
+ V+ A
Sbjct: 316 DSVQLA 321
>gi|149276517|ref|ZP_01882661.1| RNA-binding protein [Pedobacter sp. BAL39]
gi|149233037|gb|EDM38412.1| RNA-binding protein [Pedobacter sp. BAL39]
Length = 100
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K+F+ LP V +L +F G V+ +I D+ TG+SRGFGFV M EE + A +
Sbjct: 1 MKIFITGLPLEVGEDELTAVFGDFGQVKSLRIIKDRETGQSRGFGFVEMPVEEEAKEAIK 60
Query: 152 QFNG--YVSNKLS 162
+ NG Y N++
Sbjct: 61 RMNGGDYNGNRIK 73
>gi|75319742|sp|Q43472.1|GRP_HORVU RecName: Full=Glycine-rich RNA-binding protein blt801; AltName:
Full=Low temperature-responsive RNA-binding protein
gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding protein [Hordeum vulgare
subsp. vulgare]
Length = 161
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+ FVG L ++ D L F G+V +I D+ TGRSRGFGFVT +S E + A +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 153 FNG 155
NG
Sbjct: 67 MNG 69
>gi|406952399|gb|EKD82023.1| hypothetical protein ACD_39C01519G0004 [uncultured bacterium]
Length = 83
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVGNLPFSVD+ +L F G V VI D+ +GRSRG+GFV + +AA
Sbjct: 4 KIFVGNLPFSVDNRKLEEEFAKFGQVVSAKVIMDRNSGRSRGYGFVEFTDPGSAQAAVDG 63
Query: 153 FN 154
N
Sbjct: 64 MN 65
>gi|448112471|ref|XP_004202105.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
gi|359465094|emb|CCE88799.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
Length = 406
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVT---GRSRGFGFVTMSSVEEVEA 148
P ++FVGNLPFS++ L L AG E+V D T G+SRGFG V ++ EE
Sbjct: 217 PGTEIFVGNLPFSINWQALKDLMREAG--EVVRADVRTDNWGKSRGFGTVVFNTEEEAAK 274
Query: 149 AAQQFNGY 156
A + F GY
Sbjct: 275 AVEYFQGY 282
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVT--GRSRGFGFVTMSSVEEVEAAA 150
D +F+GN+PFS S + LF+ + +++ D VT GRSRG V S+ E+V A
Sbjct: 100 DNSIFIGNIPFSCTSKDIQELFKD--DFQLIKADIVTSRGRSRGMATVEFSNKEDVAKAI 157
Query: 151 QQFNGY 156
+F+ Y
Sbjct: 158 SKFDHY 163
>gi|326936051|ref|XP_003214072.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like, partial
[Meleagris gallopavo]
Length = 176
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT SSVEEV+AA
Sbjct: 22 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVEEVDAA 78
>gi|120613408|ref|YP_973086.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591872|gb|ABM35312.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 176
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|388521331|gb|AFK48727.1| unknown [Lotus japonicus]
Length = 285
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
KL+V NLP+S+ +A + LF G V ++ I GR +G+ FVTM+S EE +AA +F
Sbjct: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
Query: 154 N 154
+
Sbjct: 147 D 147
>gi|378776211|ref|YP_005184641.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|364507018|gb|AEW50542.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 112
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA--- 149
K++VGNLPF L+ F G +E +I D++TG+ +GFGF+T S+ +E E+A
Sbjct: 26 KIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAESALEM 85
Query: 150 -AQQFNG 155
Q F+G
Sbjct: 86 NGQPFDG 92
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + D L F G V VI D+ +GRSRGFGFVT +S EE AA
Sbjct: 32 KVFVGGISYGTDDQSLGDAFSNYGQVTEAKVIMDRESGRSRGFGFVTFTSSEEAGAAITG 91
Query: 153 FNG 155
+G
Sbjct: 92 MDG 94
>gi|260821286|ref|XP_002605964.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
gi|229291301|gb|EEN61974.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
Length = 330
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150
D L+V LP ++ L GLFE G + +++D VTG+SRG GFV E E A
Sbjct: 112 DANLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAI 171
Query: 151 QQFNGYV 157
+ NG++
Sbjct: 172 TELNGHI 178
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 96 LFVGNL-PFSVDSA--QLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+FV NL P + DS QL G F NV+ VI D T + +GFGFVTM+ +E A Q
Sbjct: 249 IFVYNLAPDTEDSVLWQLFGPFGAVTNVK-VIRDFQTNKCKGFGFVTMAHYDEAVVAIAQ 307
Query: 153 FNGYV 157
NGY
Sbjct: 308 LNGYC 312
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
L V LP ++ ++ LF + G VE +I DKVTG+S G+GFV ++ E A
Sbjct: 29 LIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKAINTL 88
Query: 154 NG 155
NG
Sbjct: 89 NG 90
>gi|398802241|ref|ZP_10561457.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398100710|gb|EJL90943.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 148
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|255532088|ref|YP_003092460.1| RNP-1 like RNA-binding protein [Pedobacter heparinus DSM 2366]
gi|255345072|gb|ACU04398.1| RNP-1 like RNA-binding protein [Pedobacter heparinus DSM 2366]
Length = 101
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K+F+ LP V +L +F G V+ +I D+ TG+SRGFGFV M EE + A +
Sbjct: 1 MKIFITGLPLEVGEDELTAVFGDFGQVKSLRIIKDRETGQSRGFGFVEMPVEEEAKEAIK 60
Query: 152 QFNG--YVSNKLS 162
+ NG Y N++
Sbjct: 61 RMNGGDYNGNRIK 73
>gi|115462711|ref|NP_001054955.1| Os05g0223300 [Oryza sativa Japonica Group]
gi|55733833|gb|AAV59340.1| unknown protein [Oryza sativa Japonica Group]
gi|113578506|dbj|BAF16869.1| Os05g0223300 [Oryza sativa Japonica Group]
gi|125551312|gb|EAY97021.1| hypothetical protein OsI_18942 [Oryza sativa Indica Group]
gi|215697525|dbj|BAG91519.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630663|gb|EEE62795.1| hypothetical protein OsJ_17598 [Oryza sativa Japonica Group]
Length = 102
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVI-YDKVTGRSRGFGFVTMSSVEEVEAA 149
S + +++VGNLP+SVD L F G + I +D GR RGFGFV E V AA
Sbjct: 15 SLEYRVYVGNLPYSVDEQTLMDYFADYGAISAEIAWDSEMGRPRGFGFVNFEDNESVNAA 74
Query: 150 AQQFNG 155
NG
Sbjct: 75 IHGMNG 80
>gi|410941922|ref|ZP_11373714.1| hypothetical protein LEP1GSC041_2758 [Leptospira noguchii str.
2006001870]
gi|410782916|gb|EKR71915.1| hypothetical protein LEP1GSC041_2758 [Leptospira noguchii str.
2006001870]
Length = 86
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++VGNL + ++ L LF G V ++ D+ +G+S+GFGFV MS+ EE + A +
Sbjct: 3 VNIYVGNLSYDLNEGTLGDLFRVHGTVNSVKIVMDQYSGKSKGFGFVEMSNKEEADKAIK 62
Query: 152 QFNG 155
+G
Sbjct: 63 DLDG 66
>gi|348580920|ref|XP_003476226.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
isoform 1 [Cavia porcellus]
Length = 407
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
L++ NLP S+D +L G+ + G V I G SRG GF M S E+ EA QFN
Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTNGTSRGVGFARMESTEKCEAIITQFN 196
Query: 155 G 155
G
Sbjct: 197 G 197
>gi|261351264|gb|ACX71299.1| RNA-binding protein RZ-1 [Capsicum annuum]
Length = 202
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 82 LSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVT 139
+S+ED + + F+GNL +S L FE GN+ V+ DK +GRSRGFGFVT
Sbjct: 1 MSEED------EYRCFIGNLSWSTSDRGLKDAFEKFGNLVDAKVVLDKFSGRSRGFGFVT 54
Query: 140 MSSVEEVEAAAQQFNG 155
+E A + NG
Sbjct: 55 FDDKRAMEDAIEAMNG 70
>gi|383767221|ref|YP_005446202.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
gi|381387489|dbj|BAM04305.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
Length = 112
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+K++VGNL + + L LF G+V +V+ D+ TGRSRGFGFVTM E+ + A
Sbjct: 1 MKMYVGNLAWRTTTEDLEALFSNYGSVSDAIVLTDRETGRSRGFGFVTMGD-EDAKKAID 59
Query: 152 QFNG 155
+G
Sbjct: 60 ALDG 63
>gi|326319545|ref|YP_004237217.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376381|gb|ADX48650.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 172
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV L F G V V+ ++ TGRS+GFGFV M S E +AA
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL +SV L F G V V+ D+ TGRS+GFGFV M + E +AA
Sbjct: 4 KLYVGNLAYSVRDESLQAAFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAING 63
Query: 153 FNG-------YVSNKLSPKKK 166
NG V N+ P+++
Sbjct: 64 MNGQPLEGRAVVVNEARPREE 84
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+SV + L F G V V+ ++ TGRS+GFGFV M + E +AA
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAING 63
Query: 153 FNG 155
NG
Sbjct: 64 MNG 66
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNL +SV L F G V V+ D+ TGRS+GFGFV M S E +AA +
Sbjct: 4 KLYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEG 63
Query: 153 FNG-------YVSNKLSPKKK 166
NG V N+ P+++
Sbjct: 64 MNGQSLSGRAIVVNEARPREE 84
>gi|342874383|gb|EGU76397.1| hypothetical protein FOXB_13075 [Fusarium oxysporum Fo5176]
Length = 293
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEE 145
S P +FVGN+P+ + Q+ +F +AG VE ++YD TGR +GFGF +
Sbjct: 2 STRPPSRVVFVGNIPYGLTEEQITDIFSSAGKVERFRLVYDPETGRPKGFGFADYPDTDS 61
Query: 146 VEAAAQQFNGY 156
+A + N +
Sbjct: 62 ASSAVRNLNDF 72
>gi|116200107|ref|XP_001225865.1| hypothetical protein CHGG_08209 [Chaetomium globosum CBS 148.51]
gi|88179488|gb|EAQ86956.1| hypothetical protein CHGG_08209 [Chaetomium globosum CBS 148.51]
Length = 586
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 36 SSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLK 95
+ KLL P+ + QP + +R VRN S N P +
Sbjct: 244 TGQKLLGIPVIV--------QPTEAEKNRQVRNSESSGH-------------PNSVPFHR 282
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVIYDK-VTGRSRGFGFVTMSSVEEVEAAAQQFN 154
L+VGN+ FS+ L +FE G +E V K +GRSRG+GFV + A ++ N
Sbjct: 283 LYVGNIHFSITETDLQNVFEPFGELEFVQLQKDDSGRSRGYGFVQFRDAGQAREALEKMN 342
Query: 155 GY 156
G+
Sbjct: 343 GF 344
>gi|375144998|ref|YP_005007439.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361059044|gb|AEV98035.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 82
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+ ++V NL FSV + L F G V+ VI DKVT RSRGF F+ M + E A +
Sbjct: 1 MNIYVSNLSFSVQNDDLRKHFSEYGEVDSVNVIIDKVTNRSRGFAFIEMKDNQAAEKAIR 60
Query: 152 QFNG 155
+ NG
Sbjct: 61 ELNG 64
>gi|403376282|gb|EJY88118.1| RNA recognition motif (RRM)-containing protein [Oxytricha
trifallax]
Length = 1352
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVE 147
K+FVG LP ++ + F G++E ++ DK TG+ RGFGFVT S+V++V+
Sbjct: 464 KIFVGGLPHNLSDEEFRAFFAKFGDIEDCAILKDKRTGKPRGFGFVTYSTVDQVD 518
>gi|418528345|ref|ZP_13094295.1| RNA-binding protein RNP-2 [Comamonas testosteroni ATCC 11996]
gi|371454721|gb|EHN67723.1| RNA-binding protein RNP-2 [Comamonas testosteroni ATCC 11996]
Length = 130
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+S L F G V V+ ++ TGRS+GFGFV M S E +AA Q
Sbjct: 4 KLYVGNLPYSFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|356568734|ref|XP_003552565.1| PREDICTED: uncharacterized protein LOC100807155 [Glycine max]
Length = 244
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG + +S D L F G V VI D+ TGRSRGFGFVT ++ E+ +A Q
Sbjct: 41 KLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQG 100
Query: 153 FNG 155
+G
Sbjct: 101 MDG 103
>gi|299531904|ref|ZP_07045304.1| RNA-binding protein RNP-2 [Comamonas testosteroni S44]
gi|298720079|gb|EFI61036.1| RNA-binding protein RNP-2 [Comamonas testosteroni S44]
Length = 128
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+VGNLP+S L F G V V+ ++ TGRS+GFGFV M S E +AA Q
Sbjct: 4 KLYVGNLPYSFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 153 FNG 155
+G
Sbjct: 64 LHG 66
>gi|255645506|gb|ACU23248.1| unknown [Glycine max]
Length = 243
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG + +S D L F G V VI D+ TGRSRGFGFVT ++ E+ +A Q
Sbjct: 41 KLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQG 100
Query: 153 FNG 155
+G
Sbjct: 101 MDG 103
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.126 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,383,934,311
Number of Sequences: 23463169
Number of extensions: 91832632
Number of successful extensions: 278409
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3267
Number of HSP's successfully gapped in prelim test: 12164
Number of HSP's that attempted gapping in prelim test: 257955
Number of HSP's gapped (non-prelim): 25629
length of query: 166
length of database: 8,064,228,071
effective HSP length: 127
effective length of query: 39
effective length of database: 9,379,372,904
effective search space: 365795543256
effective search space used: 365795543256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 71 (32.0 bits)