BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031063
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 108/148 (72%), Gaps = 10/148 (6%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSS 73
+PK+L F S+P S SLLS S S KL + +S S + + S SRF RNVA++S
Sbjct: 13 FNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWN-----SPASRFARNVAITS 67
Query: 74 EFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKV 128
EF+ EED +D +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMV IYDK+
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 129 TGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
TGRSRGFGFVTMSSV EVEAAAQQFNGY
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGY 155
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT S +EV+ A +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 153 FNG 155
+G
Sbjct: 265 LDG 267
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/99 (73%), Positives = 79/99 (79%), Gaps = 7/99 (7%)
Query: 64 RFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
RFVR V +S +FDQ ED+ +DG NFSPDLK+FVGNLPFS DSA LA LFE AGN
Sbjct: 54 RFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGN 112
Query: 120 VEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VEMV IYDK+TGRSRGFGFVTMSS EEVEAA QQFNGY
Sbjct: 113 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF G V V+YD+ +GRSRGFGFVT SS EEV A +
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 153 FNG 155
+G
Sbjct: 249 LDG 251
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 113/154 (73%), Gaps = 12/154 (7%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKP-ISI-SSSFIHSFQPLPSSPSRFVRNVAV 71
+PK+L S+P S S+L S S KL + +SI +SS + P PSRFVRNVAV
Sbjct: 11 FNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPA-EYPSRFVRNVAV 69
Query: 72 SSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV- 123
SS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMV
Sbjct: 70 SSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVE 129
Query: 124 -IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
IYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGY
Sbjct: 130 VIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY 163
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 153 FNG 155
NG
Sbjct: 318 LNG 320
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 78/103 (75%), Gaps = 6/103 (5%)
Query: 56 QPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
+P SS F VA+S FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE
Sbjct: 53 KPFESS---FSTRVALSG-FDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFE 108
Query: 116 TAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
AGNVEM VIYDK+TGRSRGFGFVTMS+ EEVEAA QQFNGY
Sbjct: 109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGY 151
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF GNV V+YD+ +GRSRGFGFVT SS +EV A
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267
Query: 153 FNG 155
NG
Sbjct: 268 LNG 270
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 71/86 (82%), Gaps = 2/86 (2%)
Query: 73 SEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTG 130
S+FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVE+ VIYDK++G
Sbjct: 67 SDFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSG 126
Query: 131 RSRGFGFVTMSSVEEVEAAAQQFNGY 156
RSRGFGFVTMS+ EEVEAA QQFNGY
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGY 152
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF GNV V+YD+ +GRSRGFGFVT SS +EV A
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268
Query: 153 FNG 155
NG
Sbjct: 269 LNG 271
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 75/99 (75%), Gaps = 7/99 (7%)
Query: 64 RFVRNVAVSSEFDQ----EEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
RFVR V + +FDQ E+ E+ NFSPDLK+FVGNL FS DSA LA LFE AGN
Sbjct: 54 RFVRKVTLP-DFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGN 112
Query: 120 VEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156
VEMV IYDK+TGRSRGFGFVTMSS EEVEAA QQFNGY
Sbjct: 113 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+++VGNL + VD L LF G V V+YD+ +GRSRGFGFVT SS EEV A +
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 153 FNG 155
+G
Sbjct: 255 LDG 257
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 61/92 (66%), Gaps = 12/92 (13%)
Query: 85 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVT 139
E G FS + KLFVGNLP+ VDS +LAG+F+ AG VE+ VIY++ T RSRGFGFVT
Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102
Query: 140 MSSVEEVEAAAQQFNGY-------VSNKLSPK 164
MS+VEE E A + NGY NK +P+
Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 134
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEE 145
+F P +++VGNLP+ VD+++L LF G V V+ D+ TGRSRGFGFVTMSS E
Sbjct: 143 GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESE 202
Query: 146 VEAAAQQFNG 155
V A +G
Sbjct: 203 VNDAIAALDG 212
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVGNLP+ VDS LA LFE AG VE+ VIY++ T +SRGFGFVTMS+VEE E A +
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 153 FNGYVSN 159
+N Y N
Sbjct: 197 YNRYDVN 203
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F +++VGN+P+ +D A+L LF G V V+YD+ TGRSRGFGFVTM+S E+
Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 285
Query: 148 AAAQQFNG 155
A +G
Sbjct: 286 DAIANLDG 293
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S D KLFVGNLP+ +DS LA LF+ AG VE+ VIY++ T RSRGFGFVTMS+VEE +
Sbjct: 94 SEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADK 153
Query: 149 AAQQFNGY-------VSNKLSPK 164
A + ++ Y NK +P+
Sbjct: 154 AVELYSQYDLNGRLLTVNKAAPR 176
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
F P +++VGN+P+ +D A+L +F G V V++D+ +GRSRGFGFVTMSS E+
Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMS 246
Query: 148 AAAQQFNG 155
A +G
Sbjct: 247 EAIANLDG 254
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEA 148
S + KLFVGNL + V+S LA LFE AG VE+ VIY++ T +SRGFGFVTMSSV+E E
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 149 AAQQFNGY-------VSNKLSPK 164
A ++FN Y NK +P+
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPR 229
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVE 147
+ P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 148 AAAQQFNG 155
A +G
Sbjct: 300 EAISALDG 307
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAG---NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
+L+VGNLPFS+ S+QL+ +F AG NVE ++YD+VT RSRGF FVTM SVEE + A +
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVE-IVYDRVTDRSRGFAFVTMGSVEEAKEAIR 173
Query: 152 QFNG 155
F+G
Sbjct: 174 LFDG 177
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLF-ETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KL+V NL +++ S L F + G + VIYD+ +GRSRGFGF+T SS E + +A
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277
Query: 153 FN 154
N
Sbjct: 278 MN 279
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+L+VGN+P ++++ +L + E G +E+ V+YDK +GRSR FGFVTM +VE+ A ++
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 153 FN 154
N
Sbjct: 145 LN 146
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQ 152
K+++GNL +V + L F G V + G +S GFGFV+ SS EEVEAA Q
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244
Query: 153 FNGYV 157
N V
Sbjct: 245 LNNSV 249
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R +A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPLAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160
FE G++E +VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G +E ++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 152 QFNGY 156
Q NG+
Sbjct: 310 QLNGF 314
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G+++ +VI D+ TG+SRG+GFVTMS E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVE 144
+G + PD +LFVGNLP++V L LF AG+V I GRSRG G V MSS++
Sbjct: 171 NGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMK 230
Query: 145 EVEAAAQQFN 154
E A Q +
Sbjct: 231 EAMHAIQMLH 240
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
++VGNLP++ L LF G+V I + TGRS+GFG V + + ++ ++ N
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
Query: 155 GY 156
GY
Sbjct: 372 GY 373
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQ 151
++L+VG+L F++ L G+FE G ++ ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 152 QFNGY 156
Q NG+
Sbjct: 323 QLNGF 327
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G +E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G++E +VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ A L FE G+++ +VI D+ T +SRG+GFVTMS E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 60 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
SPS F R A S + + + F+ K+FVG LP+ A L FE G+
Sbjct: 7 CSPSVFPRPSAAPSA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKYFEGFGD 57
Query: 120 VE--MVIYDKVTGRSRGFGFVTM 140
+E +VI D+ TG+SRG+GFVTM
Sbjct: 58 IEEAVVITDRQTGKSRGYGFVTM 80
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG LP+ + L FE G +E +VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 153 FNGYVSNK 160
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLF+G + +S+D L F G V VI D+ TGRSRGFGFVT +S E +A Q
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 153 FNG 155
+G
Sbjct: 101 LDG 103
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
+ FVG L ++ D L F G+V +I D+ TGRSRGFGFVT +S E + A +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 153 FNG 155
NG
Sbjct: 67 MNG 69
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT S VEEV+AA
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + L FE G +E V+ D+ +G+ RGF FVT + V+ Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 153 ----FNGY 156
NG+
Sbjct: 187 KYHTINGH 194
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT S VEEV+AA
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + L FE G +E V+ D+ +G+ RGF FVT + V+ Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 153 ----FNGY 156
NG+
Sbjct: 187 KYHTINGH 194
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT S VEEV+AA
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + L FE G +E V+ D+ +G+ RGF FVT + V+ Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 153 ----FNGY 156
NG+
Sbjct: 187 KYHTINGH 194
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L F D L +F G ++ +V+ D+ T RSRGFGFVT + E+ + A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 153 FNG 155
NG
Sbjct: 67 MNG 69
>sp|Q3ZC34|RBMS2_BOVIN RNA-binding motif, single-stranded-interacting protein 2 OS=Bos
taurus GN=RBMS2 PE=2 SV=1
Length = 407
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
L++ NLP S+D +L G+ + G V I +G SRG GF M S E+ EA FN
Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 196
Query: 155 G 155
G
Sbjct: 197 G 197
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + L FE G +E++ + D+ +G+ RGF FVT + V+ Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
>sp|Q15434|RBMS2_HUMAN RNA-binding motif, single-stranded-interacting protein 2 OS=Homo
sapiens GN=RBMS2 PE=1 SV=1
Length = 407
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
L++ NLP S+D +L G+ + G V I +G SRG GF M S E+ EA FN
Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 196
Query: 155 G 155
G
Sbjct: 197 G 197
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
K+FVG + + L FE G +E++ + D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|Q8VC70|RBMS2_MOUSE RNA-binding motif, single-stranded-interacting protein 2 OS=Mus
musculus GN=Rbms2 PE=2 SV=1
Length = 383
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV-EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154
L++ NLP S+D +L G+ + G V I +G SRG GF M S E+ EA FN
Sbjct: 139 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFN 198
Query: 155 G 155
G
Sbjct: 199 G 199
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
K+FVG + + L FE G +E++ + D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
K+FVG + + L FE G +E++ + D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
K+FVG + + L FE G +E++ + D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVE 147
K+FVG + + L FE G +E++ + D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|A8NS61|EIF3G_BRUMA Eukaryotic translation initiation factor 3 subunit G OS=Brugia
malayi GN=Bm1_08615 PE=3 SV=1
Length = 287
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 98 VGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155
V NLP D +L LF T G V V DK T + +GF FVT + EAA Q+ NG
Sbjct: 212 VTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFVTFEHRSQTEAAIQKLNG 271
Query: 156 YVSNKL 161
Y + L
Sbjct: 272 YKLDHL 277
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
KLFVG L + D + L F + G V VI D+ TGRSRGFGFV+ S + A ++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 153 FNG 155
+G
Sbjct: 96 MDG 98
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT S VEEV+A+
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + L FE G +E V+ D+ +G+ RGF FVT + V+ Q
Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVE--MVIYDKVTGRSRGFGFVTMSSVEEVEAA 149
KLF+G L F L FE G + +V+ D T RSRGFGFVT S VEEV+A+
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152
K+FVG + + L E+ G +E V+ D+ +G+ RGF FVT + V+ Q
Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153
+FVG L +S+D L FE G V VIY++ T RSRG+G+V + E A Q+
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 154 NG 155
G
Sbjct: 230 QG 231
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAA 149
P LF+GNL F+ D + LF G V V T + +GFG+V S++E+ + A
Sbjct: 265 PSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 324
Query: 150 AQQFNG-YVSNK 160
G Y+ N+
Sbjct: 325 LDALQGEYIDNR 336
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 91 SPDL--KLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEV 146
SPD+ + FVG L ++ D L F G V +I D+ TGRSRGFGFVT + +
Sbjct: 3 SPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSM 62
Query: 147 EAAAQQFNG 155
+ A + NG
Sbjct: 63 KDAIEGMNG 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,306,801
Number of Sequences: 539616
Number of extensions: 2166383
Number of successful extensions: 7698
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 402
Number of HSP's that attempted gapping in prelim test: 6470
Number of HSP's gapped (non-prelim): 1332
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)