Query 031063
Match_columns 166
No_of_seqs 243 out of 1424
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.7E-19 3.6E-24 130.8 10.2 77 90-166 31-109 (144)
2 PF00076 RRM_1: RNA recognitio 99.8 4.4E-18 9.6E-23 107.5 9.1 68 96-164 1-70 (70)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 5.2E-18 1.1E-22 138.5 10.4 75 91-165 267-343 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.9E-17 4.1E-22 135.1 9.9 74 92-165 2-77 (352)
5 KOG0149 Predicted RNA-binding 99.7 8.7E-18 1.9E-22 127.7 7.0 72 91-163 10-83 (247)
6 TIGR01659 sex-lethal sex-letha 99.7 3.3E-17 7.1E-22 134.0 10.3 78 88-165 102-181 (346)
7 TIGR01645 half-pint poly-U bin 99.7 1.2E-16 2.5E-21 138.0 9.4 77 90-166 104-182 (612)
8 PF14259 RRM_6: RNA recognitio 99.7 5.3E-16 1.2E-20 98.5 9.1 68 96-164 1-70 (70)
9 TIGR01645 half-pint poly-U bin 99.7 4.8E-16 1E-20 134.2 9.8 75 92-166 203-279 (612)
10 TIGR01659 sex-lethal sex-letha 99.6 8E-16 1.7E-20 125.9 9.2 76 91-166 191-270 (346)
11 KOG0121 Nuclear cap-binding pr 99.6 4.2E-16 9.1E-21 108.6 6.2 77 89-165 32-110 (153)
12 KOG0125 Ataxin 2-binding prote 99.6 1.5E-15 3.3E-20 120.3 8.0 77 87-165 90-168 (376)
13 KOG4207 Predicted splicing fac 99.6 1E-15 2.2E-20 114.6 6.4 78 88-165 8-87 (256)
14 KOG0148 Apoptosis-promoting RN 99.6 1.7E-15 3.7E-20 117.4 7.7 77 88-164 57-135 (321)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.6 3.9E-15 8.5E-20 127.1 10.7 76 91-166 293-370 (509)
16 smart00362 RRM_2 RNA recogniti 99.6 1.1E-14 2.5E-19 90.9 9.6 72 95-166 1-72 (72)
17 KOG0126 Predicted RNA-binding 99.6 6.4E-17 1.4E-21 118.8 -0.9 76 90-165 32-109 (219)
18 PLN03120 nucleic acid binding 99.6 4E-15 8.7E-20 116.0 9.0 69 93-165 4-74 (260)
19 KOG0113 U1 small nuclear ribon 99.6 5.3E-15 1.1E-19 115.9 9.1 76 90-165 98-175 (335)
20 TIGR01622 SF-CC1 splicing fact 99.6 7.8E-15 1.7E-19 123.8 9.7 74 93-166 186-261 (457)
21 PLN03213 repressor of silencin 99.6 7.4E-15 1.6E-19 121.9 9.2 74 90-165 7-82 (759)
22 TIGR01648 hnRNP-R-Q heterogene 99.6 8.9E-15 1.9E-19 126.1 10.0 74 91-165 56-132 (578)
23 TIGR01628 PABP-1234 polyadenyl 99.6 9.7E-15 2.1E-19 126.3 9.9 71 95-165 2-74 (562)
24 TIGR01622 SF-CC1 splicing fact 99.6 1.5E-14 3.4E-19 122.0 10.3 76 90-166 86-163 (457)
25 COG0724 RNA-binding proteins ( 99.6 1.5E-14 3.2E-19 111.6 9.3 74 93-166 115-190 (306)
26 KOG0107 Alternative splicing f 99.6 6.1E-15 1.3E-19 107.8 6.5 72 91-165 8-79 (195)
27 TIGR01628 PABP-1234 polyadenyl 99.6 1.4E-14 3E-19 125.4 9.6 76 90-166 282-359 (562)
28 smart00360 RRM RNA recognition 99.6 2.7E-14 5.8E-19 88.8 8.3 69 98-166 1-71 (71)
29 KOG0122 Translation initiation 99.5 2.9E-14 6.3E-19 109.1 8.6 76 90-165 186-263 (270)
30 KOG0131 Splicing factor 3b, su 99.5 9.6E-15 2.1E-19 107.4 5.2 78 89-166 5-84 (203)
31 KOG0114 Predicted RNA-binding 99.5 4.5E-14 9.8E-19 95.1 8.0 76 89-165 14-89 (124)
32 PLN03121 nucleic acid binding 99.5 5.6E-14 1.2E-18 108.2 9.6 72 92-165 4-75 (243)
33 KOG0117 Heterogeneous nuclear 99.5 4.3E-14 9.2E-19 115.9 8.8 77 89-165 79-158 (506)
34 KOG0108 mRNA cleavage and poly 99.5 2.2E-14 4.8E-19 119.7 7.2 72 94-165 19-92 (435)
35 KOG0130 RNA-binding protein RB 99.5 3.5E-14 7.7E-19 99.9 6.0 79 87-165 66-146 (170)
36 KOG0148 Apoptosis-promoting RN 99.5 9.8E-14 2.1E-18 107.7 8.7 73 88-164 159-231 (321)
37 KOG0147 Transcriptional coacti 99.5 1.7E-14 3.8E-19 120.6 4.8 73 93-165 278-352 (549)
38 KOG0124 Polypyrimidine tract-b 99.5 1.6E-14 3.4E-19 116.2 4.3 75 91-165 111-187 (544)
39 KOG0111 Cyclophilin-type pepti 99.5 1.5E-14 3.3E-19 109.4 3.5 77 89-165 6-84 (298)
40 KOG0144 RNA-binding protein CU 99.5 1.2E-13 2.6E-18 112.9 8.6 68 90-157 31-100 (510)
41 cd00590 RRM RRM (RNA recogniti 99.5 6E-13 1.3E-17 83.4 9.2 70 95-165 1-72 (74)
42 KOG0144 RNA-binding protein CU 99.5 4.8E-14 1E-18 115.3 4.7 80 86-166 117-201 (510)
43 smart00361 RRM_1 RNA recogniti 99.4 4.9E-13 1.1E-17 85.3 7.7 59 107-165 2-69 (70)
44 KOG0146 RNA-binding protein ET 99.4 1.6E-13 3.5E-18 106.5 5.2 79 87-165 279-359 (371)
45 KOG0127 Nucleolar protein fibr 99.4 6.4E-13 1.4E-17 111.4 8.7 76 90-165 289-372 (678)
46 TIGR01648 hnRNP-R-Q heterogene 99.4 9.5E-13 2.1E-17 113.6 10.1 69 91-165 231-301 (578)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9.4E-13 2E-17 112.3 9.6 71 90-165 272-345 (481)
48 KOG0105 Alternative splicing f 99.4 3.4E-13 7.4E-18 99.7 5.8 74 91-165 4-77 (241)
49 KOG0145 RNA-binding protein EL 99.4 8.8E-13 1.9E-17 102.1 7.8 76 90-165 38-115 (360)
50 KOG4212 RNA-binding protein hn 99.4 3E-12 6.5E-17 105.2 9.9 75 91-166 42-119 (608)
51 KOG0131 Splicing factor 3b, su 99.4 8.7E-13 1.9E-17 97.1 5.7 79 87-165 90-171 (203)
52 KOG0145 RNA-binding protein EL 99.4 2.9E-12 6.2E-17 99.3 8.2 76 90-165 275-352 (360)
53 KOG0117 Heterogeneous nuclear 99.4 2.3E-12 5.1E-17 105.8 7.6 89 68-165 237-325 (506)
54 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.4E-12 3E-17 111.4 6.2 77 89-166 171-255 (509)
55 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 5.1E-12 1.1E-16 107.8 9.0 72 91-162 392-465 (481)
56 KOG0109 RNA-binding protein LA 99.3 1.5E-12 3.3E-17 102.0 4.8 65 94-166 3-69 (346)
57 PF13893 RRM_5: RNA recognitio 99.3 1.8E-11 3.9E-16 74.4 7.8 53 110-165 1-53 (56)
58 KOG4208 Nucleolar RNA-binding 99.2 2E-11 4.3E-16 91.5 7.0 78 88-165 44-124 (214)
59 KOG0127 Nucleolar protein fibr 99.2 2.1E-11 4.6E-16 102.5 8.0 74 92-165 116-190 (678)
60 KOG4206 Spliceosomal protein s 99.2 7E-11 1.5E-15 89.7 7.9 74 91-165 7-84 (221)
61 KOG0415 Predicted peptidyl pro 99.2 4.4E-11 9.5E-16 96.2 6.7 79 87-165 233-313 (479)
62 KOG4205 RNA-binding protein mu 99.1 2.6E-11 5.7E-16 97.5 3.7 74 92-166 5-80 (311)
63 KOG0146 RNA-binding protein ET 99.1 6.4E-11 1.4E-15 92.2 5.2 66 91-156 17-83 (371)
64 KOG0124 Polypyrimidine tract-b 99.1 1.5E-10 3.2E-15 93.6 6.1 74 92-165 209-284 (544)
65 KOG4205 RNA-binding protein mu 99.1 1.1E-10 2.5E-15 93.8 4.7 74 92-166 96-171 (311)
66 KOG4661 Hsp27-ERE-TATA-binding 99.1 6.1E-10 1.3E-14 94.4 9.0 77 89-165 401-479 (940)
67 KOG0533 RRM motif-containing p 99.1 5.2E-10 1.1E-14 87.0 7.4 75 90-165 80-156 (243)
68 KOG0226 RNA-binding proteins [ 99.1 2.4E-10 5.3E-15 88.2 5.2 76 90-165 187-264 (290)
69 KOG0132 RNA polymerase II C-te 99.0 3.8E-10 8.2E-15 98.2 6.8 70 93-166 421-490 (894)
70 KOG4212 RNA-binding protein hn 99.0 4.9E-10 1.1E-14 92.3 6.2 74 90-166 533-606 (608)
71 KOG0123 Polyadenylate-binding 99.0 8.7E-10 1.9E-14 91.1 7.4 68 95-165 78-147 (369)
72 KOG0109 RNA-binding protein LA 99.0 3.2E-10 6.9E-15 89.1 4.4 69 89-165 74-144 (346)
73 KOG0110 RNA-binding protein (R 99.0 1.1E-09 2.3E-14 94.6 7.7 74 93-166 515-593 (725)
74 KOG0153 Predicted RNA-binding 98.9 2.5E-09 5.4E-14 85.8 7.3 75 88-166 223-298 (377)
75 KOG0116 RasGAP SH3 binding pro 98.9 2.7E-09 5.8E-14 89.0 7.0 78 88-166 283-362 (419)
76 KOG0123 Polyadenylate-binding 98.9 3.2E-09 6.9E-14 87.8 7.1 66 94-165 2-69 (369)
77 KOG4209 Splicing factor RNPS1, 98.9 2.3E-09 5E-14 83.3 4.7 76 89-165 97-174 (231)
78 KOG0110 RNA-binding protein (R 98.8 2.7E-09 5.8E-14 92.2 4.4 73 92-164 612-686 (725)
79 KOG1548 Transcription elongati 98.8 1.4E-08 3.1E-13 81.5 8.0 76 90-165 131-215 (382)
80 KOG4454 RNA binding protein (R 98.8 2E-09 4.4E-14 81.7 2.3 77 89-166 5-82 (267)
81 KOG4660 Protein Mei2, essentia 98.8 6.9E-09 1.5E-13 87.6 4.8 73 89-164 71-143 (549)
82 KOG0106 Alternative splicing f 98.6 2.3E-08 5E-13 76.4 3.6 64 94-163 2-65 (216)
83 KOG1457 RNA binding protein (c 98.6 1.9E-07 4E-12 71.3 7.9 71 90-160 31-104 (284)
84 PF04059 RRM_2: RNA recognitio 98.6 3.9E-07 8.6E-12 61.5 7.5 67 94-160 2-72 (97)
85 KOG4211 Splicing factor hnRNP- 98.6 2.4E-07 5.2E-12 77.5 7.6 73 91-165 8-80 (510)
86 KOG0151 Predicted splicing reg 98.5 3E-07 6.5E-12 79.9 6.1 75 90-164 171-250 (877)
87 KOG0120 Splicing factor U2AF, 98.4 2.7E-07 5.9E-12 78.3 4.3 77 89-165 285-363 (500)
88 KOG1995 Conserved Zn-finger pr 98.3 7.6E-07 1.7E-11 72.0 5.1 76 90-165 63-148 (351)
89 KOG1457 RNA binding protein (c 98.2 1.4E-06 3E-11 66.6 4.5 69 89-159 206-274 (284)
90 COG5175 MOT2 Transcriptional r 98.2 3.7E-06 8.1E-11 67.8 6.0 74 92-165 113-197 (480)
91 KOG0129 Predicted RNA-binding 98.2 5.6E-06 1.2E-10 69.8 7.3 67 86-152 363-432 (520)
92 KOG0147 Transcriptional coacti 98.0 1.9E-06 4.2E-11 72.9 1.4 77 89-166 175-253 (549)
93 PF11608 Limkain-b1: Limkain b 98.0 1.3E-05 2.9E-10 52.3 5.0 64 94-165 3-71 (90)
94 KOG0106 Alternative splicing f 98.0 4.6E-06 9.9E-11 63.9 2.5 70 90-165 96-165 (216)
95 KOG4211 Splicing factor hnRNP- 97.9 2.9E-05 6.2E-10 65.3 6.7 73 91-165 101-176 (510)
96 KOG4210 Nuclear localization s 97.9 7.4E-06 1.6E-10 65.7 2.5 73 92-165 183-258 (285)
97 KOG4307 RNA binding protein RB 97.8 7.6E-05 1.7E-09 65.3 7.3 73 93-165 867-941 (944)
98 KOG4849 mRNA cleavage factor I 97.8 2.8E-05 6E-10 63.1 4.2 74 91-164 78-155 (498)
99 KOG2314 Translation initiation 97.8 9.1E-05 2E-09 63.4 7.3 70 91-161 56-133 (698)
100 KOG1190 Polypyrimidine tract-b 97.7 0.00012 2.7E-09 60.4 7.1 68 93-165 297-367 (492)
101 KOG4206 Spliceosomal protein s 97.7 0.0002 4.4E-09 54.8 7.7 74 89-165 142-216 (221)
102 KOG1548 Transcription elongati 97.7 0.00012 2.5E-09 59.3 6.7 75 88-165 260-346 (382)
103 PF08777 RRM_3: RNA binding mo 97.7 0.00017 3.8E-09 49.4 6.2 59 94-156 2-60 (105)
104 KOG0129 Predicted RNA-binding 97.6 0.00017 3.7E-09 61.0 6.2 64 91-154 257-327 (520)
105 KOG3152 TBP-binding protein, a 97.5 0.00013 2.8E-09 56.9 4.0 71 92-162 73-157 (278)
106 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00084 1.8E-08 45.6 6.9 70 93-164 6-84 (100)
107 KOG1365 RNA-binding protein Fu 97.3 0.00035 7.5E-09 57.5 4.6 69 94-163 162-235 (508)
108 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.0011 2.4E-08 39.7 5.4 52 94-150 2-53 (53)
109 KOG2202 U2 snRNP splicing fact 97.2 0.00013 2.9E-09 56.8 1.5 56 109-164 84-141 (260)
110 KOG1365 RNA-binding protein Fu 97.2 0.0004 8.6E-09 57.2 4.2 73 93-165 280-356 (508)
111 KOG0105 Alternative splicing f 97.1 0.0019 4.2E-08 48.4 6.6 64 89-159 111-176 (241)
112 KOG0112 Large RNA-binding prot 97.0 0.0012 2.6E-08 59.4 4.9 69 89-161 451-519 (975)
113 KOG0120 Splicing factor U2AF, 96.8 0.0037 8E-08 53.6 6.7 57 108-164 424-485 (500)
114 KOG1456 Heterogeneous nuclear 96.8 0.015 3.2E-07 48.0 9.9 75 89-166 283-358 (494)
115 KOG1190 Polypyrimidine tract-b 96.7 0.0029 6.3E-08 52.5 5.2 67 91-160 148-215 (492)
116 PF08952 DUF1866: Domain of un 96.7 0.0086 1.9E-07 43.3 7.0 72 88-166 22-102 (146)
117 KOG0115 RNA-binding protein p5 96.7 0.0019 4E-08 50.6 3.7 63 93-155 31-94 (275)
118 KOG0128 RNA-binding protein SA 96.7 0.00014 3.1E-09 64.7 -2.8 66 91-156 665-732 (881)
119 KOG2193 IGF-II mRNA-binding pr 96.6 0.0022 4.8E-08 53.5 3.9 66 94-165 2-70 (584)
120 KOG2068 MOT2 transcription fac 96.6 0.00087 1.9E-08 54.2 1.4 73 92-164 76-156 (327)
121 PF08675 RNA_bind: RNA binding 96.6 0.016 3.5E-07 37.9 6.8 56 91-154 7-63 (87)
122 KOG1855 Predicted RNA-binding 96.5 0.002 4.4E-08 53.7 2.7 65 91-155 229-308 (484)
123 KOG1996 mRNA splicing factor [ 96.4 0.011 2.3E-07 47.3 6.0 57 108-164 301-360 (378)
124 KOG4676 Splicing factor, argin 96.3 0.0063 1.4E-07 50.4 4.5 72 93-165 7-83 (479)
125 KOG4285 Mitotic phosphoprotein 96.3 0.061 1.3E-06 43.2 9.9 65 93-163 197-261 (350)
126 KOG2253 U1 snRNP complex, subu 96.1 0.0065 1.4E-07 53.1 3.8 71 89-166 36-106 (668)
127 KOG0112 Large RNA-binding prot 96.0 0.0015 3.3E-08 58.7 -0.2 77 87-163 366-443 (975)
128 KOG2416 Acinus (induces apopto 96.0 0.0055 1.2E-07 53.1 2.8 65 89-157 440-505 (718)
129 KOG0128 RNA-binding protein SA 95.9 0.003 6.5E-08 56.6 1.2 70 92-161 735-805 (881)
130 PF10309 DUF2414: Protein of u 95.9 0.062 1.3E-06 33.2 6.7 53 93-153 5-62 (62)
131 KOG1456 Heterogeneous nuclear 95.7 0.031 6.8E-07 46.2 6.1 69 91-162 118-188 (494)
132 KOG4307 RNA binding protein RB 95.4 0.0091 2E-07 52.7 2.1 75 91-165 432-508 (944)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.021 4.5E-07 42.7 3.2 70 91-160 5-82 (176)
134 PF11767 SET_assoc: Histone ly 95.1 0.14 3E-06 32.1 6.2 55 104-165 11-65 (66)
135 PF07576 BRAP2: BRCA1-associat 94.6 0.51 1.1E-05 32.5 8.7 66 93-160 13-81 (110)
136 KOG4210 Nuclear localization s 94.2 0.027 5.9E-07 45.3 1.8 73 91-163 86-160 (285)
137 PF04847 Calcipressin: Calcipr 93.8 0.23 5.1E-06 37.4 6.0 56 106-165 8-65 (184)
138 PF03880 DbpA: DbpA RNA bindin 93.6 0.22 4.8E-06 31.6 4.9 65 95-166 2-72 (74)
139 KOG2135 Proteins containing th 93.2 0.047 1E-06 46.3 1.6 66 95-165 374-440 (526)
140 KOG4410 5-formyltetrahydrofola 92.6 0.41 8.9E-06 38.4 6.0 52 89-144 326-378 (396)
141 KOG2591 c-Mpl binding protein, 92.2 0.31 6.7E-06 42.4 5.2 69 91-164 173-245 (684)
142 KOG4660 Protein Mei2, essentia 92.1 0.24 5.3E-06 42.8 4.5 67 91-157 359-455 (549)
143 PF15023 DUF4523: Protein of u 89.8 2.1 4.6E-05 31.0 6.7 67 85-156 78-148 (166)
144 KOG2193 IGF-II mRNA-binding pr 88.3 0.034 7.4E-07 46.7 -3.6 71 91-165 78-151 (584)
145 PF09707 Cas_Cas2CT1978: CRISP 81.4 3.7 8.1E-05 27.0 4.3 49 92-141 24-72 (86)
146 KOG4676 Splicing factor, argin 80.7 0.3 6.5E-06 40.7 -1.3 64 93-159 151-214 (479)
147 KOG4454 RNA binding protein (R 80.7 0.42 9.2E-06 37.0 -0.4 69 89-158 76-150 (267)
148 PRK11558 putative ssRNA endonu 76.5 5.2 0.00011 26.9 3.9 51 92-143 26-76 (97)
149 KOG4574 RNA-binding protein (c 71.0 2.2 4.8E-05 39.0 1.4 59 94-158 299-359 (1007)
150 KOG2318 Uncharacterized conser 70.4 19 0.00042 31.8 6.8 73 90-162 171-297 (650)
151 TIGR01873 cas_CT1978 CRISPR-as 68.3 6.1 0.00013 26.1 2.7 50 92-142 24-74 (87)
152 KOG3003 Molecular chaperone of 65.9 13 0.00029 29.0 4.5 48 105-164 162-223 (236)
153 PF15513 DUF4651: Domain of un 65.8 15 0.00033 22.6 3.9 16 108-123 9-24 (62)
154 COG0724 RNA-binding proteins ( 64.7 12 0.00026 28.0 4.2 71 88-158 220-292 (306)
155 KOG0804 Cytoplasmic Zn-finger 64.1 27 0.00059 30.0 6.3 66 93-160 74-142 (493)
156 PF03468 XS: XS domain; Inter 63.9 9.3 0.0002 26.5 3.1 36 105-142 29-65 (116)
157 KOG4483 Uncharacterized conser 53.2 33 0.00072 29.1 5.0 63 93-161 391-454 (528)
158 KOG4008 rRNA processing protei 51.6 16 0.00035 28.7 2.8 34 89-122 36-69 (261)
159 KOG3424 40S ribosomal protein 41.8 54 0.0012 23.0 3.9 44 104-148 34-84 (132)
160 KOG1295 Nonsense-mediated deca 37.3 53 0.0012 27.5 3.9 68 92-159 6-78 (376)
161 PF03439 Spt5-NGN: Early trans 36.0 52 0.0011 21.1 3.1 26 132-157 43-68 (84)
162 PF11823 DUF3343: Protein of u 36.0 44 0.00096 20.7 2.6 29 134-162 2-30 (73)
163 KOG2891 Surface glycoprotein [ 35.4 62 0.0013 26.2 3.9 34 89-122 145-190 (445)
164 PF07292 NID: Nmi/IFP 35 domai 35.3 21 0.00045 23.6 1.0 24 91-114 50-73 (88)
165 KOG0156 Cytochrome P450 CYP2 s 34.7 93 0.002 27.0 5.2 59 97-163 36-97 (489)
166 PTZ00071 40S ribosomal protein 33.8 85 0.0018 22.4 4.0 44 104-148 35-86 (132)
167 PF01282 Ribosomal_S24e: Ribos 33.0 58 0.0013 21.1 2.9 45 103-148 11-62 (84)
168 KOG2295 C2H2 Zn-finger protein 32.5 5.9 0.00013 34.7 -2.4 69 92-160 230-300 (648)
169 KOG4213 RNA-binding protein La 32.4 1.2E+02 0.0026 23.0 4.7 55 93-152 111-169 (205)
170 PF11411 DNA_ligase_IV: DNA li 31.1 40 0.00087 18.4 1.6 16 103-118 19-34 (36)
171 PRK01178 rps24e 30S ribosomal 30.6 93 0.002 21.0 3.6 45 104-149 30-81 (99)
172 COG5638 Uncharacterized conser 28.8 1.6E+02 0.0035 25.3 5.4 28 90-117 143-171 (622)
173 COG0030 KsgA Dimethyladenosine 26.8 63 0.0014 25.7 2.6 28 93-120 95-122 (259)
174 PF15063 TC1: Thyroid cancer p 26.1 42 0.00092 21.5 1.3 29 93-121 25-53 (79)
175 PF08206 OB_RNB: Ribonuclease 25.9 49 0.0011 19.6 1.5 11 132-142 7-17 (58)
176 COG0150 PurM Phosphoribosylami 23.9 31 0.00067 28.6 0.4 46 108-156 276-322 (345)
177 cd00027 BRCT Breast Cancer Sup 23.9 1.3E+02 0.0027 17.0 3.2 27 94-120 2-28 (72)
178 PF00398 RrnaAD: Ribosomal RNA 23.8 86 0.0019 24.5 3.0 30 92-121 96-127 (262)
179 smart00195 DSPc Dual specifici 23.2 2.4E+02 0.0051 19.2 4.9 18 95-112 7-24 (138)
180 PRK08559 nusG transcription an 23.0 1E+02 0.0022 22.2 2.9 26 132-157 45-70 (153)
181 PRK15464 cold shock-like prote 22.8 44 0.00096 20.9 0.9 11 132-142 15-25 (70)
182 KOG4019 Calcineurin-mediated s 22.5 89 0.0019 23.6 2.6 66 92-161 9-79 (193)
183 KOG0862 Synaptobrevin/VAMP-lik 22.1 89 0.0019 24.2 2.6 31 108-144 89-120 (216)
184 PRK15463 cold shock-like prote 21.6 50 0.0011 20.6 1.0 11 132-142 15-25 (70)
185 PRK09937 stationary phase/star 21.5 52 0.0011 20.8 1.0 11 132-142 12-22 (74)
186 COG3254 Uncharacterized conser 21.4 2.8E+02 0.006 19.0 6.4 53 96-150 5-68 (105)
187 PF14893 PNMA: PNMA 20.9 73 0.0016 26.3 2.0 27 89-115 14-40 (331)
188 PRK09507 cspE cold shock prote 20.9 51 0.0011 20.4 0.9 11 132-142 14-24 (69)
189 PRK14998 cold shock-like prote 20.8 54 0.0012 20.6 1.0 11 132-142 12-22 (73)
190 PRK10943 cold shock-like prote 20.1 53 0.0011 20.3 0.8 11 132-142 14-24 (69)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=1.7e-19 Score=130.78 Aligned_cols=77 Identities=36% Similarity=0.519 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+||++++++++|+++|++||.|.. +++|+.+++++|||||+|.+.++|++|++.||+..|+|+.|+++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345779999999999999999999999999988 78899999999999999999999999999999999999999874
No 2
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=4.4e-18 Score=107.46 Aligned_cols=68 Identities=35% Similarity=0.623 Sum_probs=63.6
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 96 LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 96 lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
|||+|||.++++++|+++|++||.|.. +..+ .++..+|||||+|.+.++|++|++.|||..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988 4444 6899999999999999999999999999999999986
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=5.2e-18 Score=138.46 Aligned_cols=75 Identities=31% Similarity=0.459 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..+.+|||+|||+++++++|+++|++||.|.. |++|+.+|+++|||||+|.+.++|.+|++.|||..|+||.|+|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V 343 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQV 343 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34568999999999999999999999999988 7888889999999999999999999999999999999999987
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=1.9e-17 Score=135.14 Aligned_cols=74 Identities=32% Similarity=0.545 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...+|||+|||.++++++|+++|++||.|.. |++|+.+|+++|||||+|.+.++|++||+.|||..|.|+.|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 4679999999999999999999999999988 7888889999999999999999999999999999999999986
No 5
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=8.7e-18 Score=127.67 Aligned_cols=72 Identities=33% Similarity=0.527 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
..-++||||||+|.+..++|+++|++||+|.+ |+.|+.+|++||||||+|.+.+.|++|++. -.-+|+||+-
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~a 83 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKA 83 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccc
Confidence 34578999999999999999999999999999 889999999999999999999999999974 4557888864
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=3.3e-17 Score=134.03 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
......++|||+|||+++++++|+++|++||.|+. |+.|+.+++++|||||+|.++++|++|++.|||..|.+++|++
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 35567899999999999999999999999999987 7788889999999999999999999999999999999999986
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=1.2e-16 Score=138.04 Aligned_cols=77 Identities=23% Similarity=0.450 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++||||||++++++++|+++|.+||.|.. +++|+.+|+++|||||+|.+.++|++|++.|||..++||.|+++
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 356789999999999999999999999999988 77899999999999999999999999999999999999999874
No 8
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=5.3e-16 Score=98.50 Aligned_cols=68 Identities=35% Similarity=0.545 Sum_probs=61.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 96 LFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 96 lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
|||+|||+++++++|+++|+.||.|.. +..++. |+.+|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999988 555655 89999999999999999999999999999999885
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=4.8e-16 Score=134.24 Aligned_cols=75 Identities=12% Similarity=0.249 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..++|||+||+.++++++|+++|+.||.|.. +..|+.+|+++|||||+|.+.++|.+|++.|||+.|+|+.|+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4579999999999999999999999999988 77888899999999999999999999999999999999999873
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=8e-16 Score=125.88 Aligned_cols=76 Identities=29% Similarity=0.493 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC--eeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK--LSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g--r~i~~k 166 (166)
....+|||+|||.++++++|+++|++||.|+. |+.|+.+|+.+|||||+|.+.++|++||+.||+..+.| ++|+|+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 34678999999999999999999999999987 77888899999999999999999999999999999876 566653
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=4.2e-16 Score=108.61 Aligned_cols=77 Identities=25% Similarity=0.426 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEE--ecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVI--YDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~--~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++||||||++-++||+|.++|+++|.|..|+ +|+.+....|||||+|.+.++|+.|++-++|+.|+.++|++
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 345578999999999999999999999999999954 47778899999999999999999999999999999999986
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.5e-15 Score=120.27 Aligned_cols=77 Identities=30% Similarity=0.517 Sum_probs=68.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 87 ~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
+......++|+|.|||+...+-||+.+|++||.|.+ |+.+. ..+||||||+|++.++|++|-++|||..+.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 344566789999999999999999999999999988 55553 45799999999999999999999999999999998
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
|
T Consensus 168 V 168 (376)
T KOG0125|consen 168 V 168 (376)
T ss_pred E
Confidence 7
No 13
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.61 E-value=1e-15 Score=114.58 Aligned_cols=78 Identities=27% Similarity=0.385 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
++.+....|-|-||.+.++.++|+.+|++||.|-. |.+|+.|++++|||||-|.+..+|+.|+++|+|.+|+|+.|+|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34556788999999999999999999999999987 8889999999999999999999999999999999999999976
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.7e-15 Score=117.35 Aligned_cols=77 Identities=34% Similarity=0.553 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
+.......||||.|...++-|+|++.|.+||+|.+ |++|..|+++||||||.|.+.++|+.||+.|||..|++|.||
T Consensus 57 ~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 34455788999999999999999999999999988 999999999999999999999999999999999999999997
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.61 E-value=3.9e-15 Score=127.09 Aligned_cols=76 Identities=24% Similarity=0.450 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...++|||||||+.+++++|+++|+.||.|.. ++.+..+|.++|||||+|.+.++|..|++.|||..|+|+.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45689999999999999999999999999988 67788899999999999999999999999999999999998763
No 16
>smart00362 RRM_2 RNA recognition motif.
Probab=99.60 E-value=1.1e-14 Score=90.93 Aligned_cols=72 Identities=39% Similarity=0.559 Sum_probs=64.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 95 ~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
+|||+|||.++++++|+++|.+||.+..+.+....+..+|+|||+|.+.++|++|++.++|..++|+.|+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999998843322227889999999999999999999999999999999875
No 17
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=6.4e-17 Score=118.85 Aligned_cols=76 Identities=22% Similarity=0.453 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....-|||||||++.+|.||..+|++||+|.. +++|+.||+++||||+.|.+......|+..|||..|.||.|+|
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 345678999999999999999999999999988 7899999999999999999999999999999999999999997
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=4e-15 Score=116.03 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=62.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.++||||||++.+++++|+++|+.||.|+. |..|+ ..+|||||+|.+.++|+.|+. |||..|+|+.|++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEE
Confidence 579999999999999999999999999999 44443 357999999999999999995 9999999999986
No 19
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=5.3e-15 Score=115.91 Aligned_cols=76 Identities=26% Similarity=0.433 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..+-++|||+.|+++++|.+|+..|+.||.|+. ++.|..||+++|||||+|..+.+...|.+.-+|.+|+|+.|.|
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 367799999999999999999999999999998 7889999999999999999999999999999999999999876
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.58 E-value=7.8e-15 Score=123.80 Aligned_cols=74 Identities=38% Similarity=0.613 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.++|||+||+..+++++|+++|++||.|.. ++.+..+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~ 261 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVG 261 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEE
Confidence 689999999999999999999999999988 67788889999999999999999999999999999999999873
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=7.4e-15 Score=121.92 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=66.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCH--HHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSV--EEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~--~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....+||||||++++++++|+.+|..||.|..+.+-+++| ||||||+|... .++.+||..|||..+.||.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34468999999999999999999999999999843336778 89999999987 7899999999999999999986
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=8.9e-15 Score=126.06 Aligned_cols=74 Identities=30% Similarity=0.503 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC-Ceecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~-gr~i~~ 165 (166)
...++|||+|||++++|++|+++|++||.|.. |++| .+|+++|||||+|.+.++|++||+.||+..+. |+.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 35689999999999999999999999999988 6778 78999999999999999999999999999885 666544
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=9.7e-15 Score=126.35 Aligned_cols=71 Identities=32% Similarity=0.410 Sum_probs=67.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 95 ~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.|||||||.+++|++|+++|++||.|.. |++|..+++++|||||+|.+.++|++|++.+|+..+.|++|++
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i 74 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRI 74 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEe
Confidence 6999999999999999999999999988 6778889999999999999999999999999999999999886
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=1.5e-14 Score=121.98 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||..+++++|+++|++||.|.. ++.|+.+|+++|||||+|.+.++|.+|+. |+|..+.|++|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 345789999999999999999999999999988 77788899999999999999999999996 89999999998763
No 25
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=111.61 Aligned_cols=74 Identities=38% Similarity=0.619 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.++||||||+.++++++|+++|.+||.|.. +.+|+.+|+.+|||||+|.+.++|..|++.++|..|.|+.|++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 699999999999999999999999999977 67777899999999999999999999999999999999999873
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=6.1e-15 Score=107.79 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=64.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..+++||||||+..+++.||...|..||.|..|-+.. ...|||||+|.+..+|+.|+..|||..|+|..|+|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 4489999999999999999999999999998843332 35799999999999999999999999999998887
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=1.4e-14 Score=125.36 Aligned_cols=76 Identities=32% Similarity=0.474 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....+|||+||+.++++++|+++|++||.|.. ++.| .+|+++|||||+|.+.++|.+|++.|||..++|++|+|+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~ 359 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVA 359 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEE
Confidence 345678999999999999999999999999988 5566 689999999999999999999999999999999999773
No 28
>smart00360 RRM RNA recognition motif.
Probab=99.56 E-value=2.7e-14 Score=88.82 Aligned_cols=69 Identities=41% Similarity=0.596 Sum_probs=63.1
Q ss_pred EcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 98 VGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 98 VgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
|+|||.++++++|+++|++||.|.. +..++.++.++|+|||+|.+.++|.+|++.+++..++|+.|++.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999988 55566678999999999999999999999999999999998863
No 29
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.9e-14 Score=109.09 Aligned_cols=76 Identities=30% Similarity=0.429 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....+|-|.||+.+++|++|+++|..||.|.. +.+|++||.++|||||+|.+.++|.+||+.|||+-++.-.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 346788999999999999999999999999988 8899999999999999999999999999999999888877765
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.53 E-value=9.6e-15 Score=107.36 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
+...+.+||||||+..++++.|.++|-+.|.|.. +..|+.+..++||||++|.++++|+-|++.||...|.||+|++.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 3456889999999999999999999999999988 67888999999999999999999999999999999999999873
No 31
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=4.5e-14 Score=95.14 Aligned_cols=76 Identities=22% Similarity=0.398 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
....++.|||.|||+.++.|++.++|.+||.|..|.... +...+|-|||.|.+..+|.+|++.|+|+.++++.+.|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~-~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN-TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC-ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 345578999999999999999999999999999876654 4567899999999999999999999999999998875
No 32
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.6e-14 Score=108.22 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...+|||+||++.+++++|+++|+.||.|..|.+.+. ++.+|||||+|.+++.++.|+ .|+|..|.|++|.+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~I 75 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS-GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCI 75 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC-CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEE
Confidence 4689999999999999999999999999999433332 455689999999999999999 59999999999865
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=4.3e-14 Score=115.92 Aligned_cols=77 Identities=29% Similarity=0.459 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe-CCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS-NKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l-~gr~i~~ 165 (166)
....++-||||.||.++.|++|..+|++.|.|-+ +++|+.+|.+||||||+|.+.++|++||+.||+++| .|+.|+|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 3467899999999999999999999999999977 899999999999999999999999999999999976 4555543
No 34
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=2.2e-14 Score=119.71 Aligned_cols=72 Identities=33% Similarity=0.605 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+.|||||+|+++++++|..+|+..|.|.. +++|+++|+.+||||++|.+.++++.|++.|||.++.||+|++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 89999999999999999999999999988 8899999999999999999999999999999999999999986
No 35
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=3.5e-14 Score=99.93 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=73.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 87 ~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
......+..|||.++....++++|.+.|..||+|+. +.+|+.||..+||+.|+|.+.++|++|++++||..|-|+.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 445667899999999999999999999999999998 677899999999999999999999999999999999999887
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
|
T Consensus 146 V 146 (170)
T KOG0130|consen 146 V 146 (170)
T ss_pred E
Confidence 6
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=9.8e-14 Score=107.65 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=66.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.....+++|||||++..++|++|++.|+.||.|.+|..-+. +||+||.|.+.|.|.+||..|||.+++|+.+|
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----qGYaFVrF~tkEaAahAIv~mNntei~G~~Vk 231 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVR 231 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----cceEEEEecchhhHHHHHHHhcCceeCceEEE
Confidence 34567899999999999999999999999999999655553 78999999999999999999999999999876
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.50 E-value=1.7e-14 Score=120.61 Aligned_cols=73 Identities=38% Similarity=0.632 Sum_probs=68.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..+||||||.+++++++|+.+|+.||.|+. +.+|.+||+++|||||+|.+.+.|.+|+++|||.+|-||.|+|
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEE
Confidence 344999999999999999999999999998 5677779999999999999999999999999999999999987
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.6e-14 Score=116.21 Aligned_cols=75 Identities=24% Similarity=0.458 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.--++||||.+.+...|+.||..|..||.|+. +.||+.|++++||+||+|.-+|.|+.|++.|||..++||.|+|
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKV 187 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 187 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccc
Confidence 34689999999999999999999999999998 6889999999999999999999999999999999999999987
No 39
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.5e-14 Score=109.38 Aligned_cols=77 Identities=25% Similarity=0.331 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++||||+|..++++.-|...|-.||.|.. +.+|.+++++||||||+|...++|.+||+.||+.+|.||.|+|
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 3456789999999999999999999999999988 7889999999999999999999999999999999999999987
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.2e-13 Score=112.94 Aligned_cols=68 Identities=35% Similarity=0.514 Sum_probs=63.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcE
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~ 157 (166)
....-++|||-+|..++|+||+++|++||.|.+ |++|+.||.++|||||.|.+.++|.+|+.+||+.+
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQK 100 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccc
Confidence 356789999999999999999999999999988 78999999999999999999999999999999864
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.47 E-value=6e-13 Score=83.43 Aligned_cols=70 Identities=37% Similarity=0.575 Sum_probs=62.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 95 ~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+|+|+|||.++++++|+++|+.+|.|.. +..++ .+..+|+|||+|.+.++|..|++.+++..++|+.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4899999999999999999999999988 44444 3367899999999999999999999999999999876
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.8e-14 Score=115.26 Aligned_cols=80 Identities=29% Similarity=0.398 Sum_probs=67.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcE-eCC--
Q 031063 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV-SNK-- 160 (166)
Q Consensus 86 ~~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~-l~g-- 160 (166)
+......+++||||.|+..++|+|++++|++||.|++ |.+|. .|.+||||||.|.+.+.|..||+.|||.. +.|
T Consensus 117 E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs 195 (510)
T KOG0144|consen 117 ERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCS 195 (510)
T ss_pred hhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCC
Confidence 3344466899999999999999999999999999999 66665 69999999999999999999999999953 444
Q ss_pred eeceeC
Q 031063 161 LSPKKK 166 (166)
Q Consensus 161 r~i~~k 166 (166)
.+|.||
T Consensus 196 ~PLVVk 201 (510)
T KOG0144|consen 196 QPLVVK 201 (510)
T ss_pred CceEEE
Confidence 445554
No 43
>smart00361 RRM_1 RNA recognition motif.
Probab=99.45 E-value=4.9e-13 Score=85.28 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=53.4
Q ss_pred HHHHHHHhh----ccCceeEE---EecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 107 SAQLAGLFE----TAGNVEMV---IYDKVT--GRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 107 ~~~l~~~F~----~~G~i~~i---~~~~~t--g~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+++|+++|. +||.|..+ .+++.+ |.++|||||+|.+.++|.+|++.|||..++||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 99999873 677766 999999999999999999999999999999999975
No 44
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.6e-13 Score=106.51 Aligned_cols=79 Identities=28% Similarity=0.409 Sum_probs=74.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 87 ~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
..+..++|+|||-.||.+..+.||..+|-.||.|.. |.+|+.|+++|+||||.|++...++.||.+|||+.|+-++||
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 345677999999999999999999999999999988 899999999999999999999999999999999999999987
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
|
T Consensus 359 V 359 (371)
T KOG0146|consen 359 V 359 (371)
T ss_pred h
Confidence 6
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=6.4e-13 Score=111.44 Aligned_cols=76 Identities=26% Similarity=0.421 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHh-----CC-cEeCCe
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF-----NG-YVSNKL 161 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l-----~g-~~l~gr 161 (166)
.....+|||.|||+++++++|.++|++||.|.. ++.++.||.++|.|||.|.+..+|..||++- .| +.|+||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 345689999999999999999999999999998 7889999999999999999999999999865 34 789999
Q ss_pred ecee
Q 031063 162 SPKK 165 (166)
Q Consensus 162 ~i~~ 165 (166)
.|+|
T Consensus 369 ~Lkv 372 (678)
T KOG0127|consen 369 LLKV 372 (678)
T ss_pred EEee
Confidence 9875
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.42 E-value=9.5e-13 Score=113.60 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcc--CceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETA--GNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~--G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...++|||+||+.++++++|+++|++| |.|+.|.+. ++||||+|.+.++|++|++.|||.+|+|+.|++
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V 301 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEV 301 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345789999999999999999999999 999886433 469999999999999999999999999999987
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=9.4e-13 Score=112.26 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=63.8
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhccCceeEE--EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~-~~t~~~l~~~F~~~G~i~~i--~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..+..+|||+||++ .+++++|+++|+.||.|..+ +++ .+|||||+|.+.++|..|++.|||..|+|+.|++
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v 345 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRV 345 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 34678999999998 69999999999999999984 443 2699999999999999999999999999999986
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.4e-13 Score=99.68 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...++|||||||.++.+.+|+++|-+||.|..|.+....| ..+||||+|.+..+|+.||..-+|+.++|..|+|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRV 77 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEE
Confidence 4578999999999999999999999999999976654333 3579999999999999999999999999999987
No 49
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=8.8e-13 Score=102.11 Aligned_cols=76 Identities=30% Similarity=0.494 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.+....|.|.-||.+++++|++.+|...|+|+. +++|+.+|++-|||||.|.++++|++|+..+||..|..+.|+|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 344678999999999999999999999999998 8999999999999999999999999999999999999999986
No 50
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.38 E-value=3e-12 Score=105.16 Aligned_cols=75 Identities=28% Similarity=0.502 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhh-ccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFE-TAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~-~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.+||.|||+++.|.+|+++|. +.|+|+. +.+| +.|+.||+|.|+|+++|.+++|++.||.+++.||+|+||
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 4566799999999999999999996 5799988 4555 479999999999999999999999999999999999997
No 51
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=8.7e-13 Score=97.12 Aligned_cols=79 Identities=32% Similarity=0.433 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE---EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM---VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 87 ~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~---i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
+.....+.++|||||.+.++|..|.+.|+.||.+.. |++|..||..+|||||.|.+.+.+.+|++.|||..++.++|
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 345566789999999999999999999999999977 89999999999999999999999999999999999999998
Q ss_pred ee
Q 031063 164 KK 165 (166)
Q Consensus 164 ~~ 165 (166)
.+
T Consensus 170 tv 171 (203)
T KOG0131|consen 170 TV 171 (203)
T ss_pred EE
Confidence 75
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.9e-12 Score=99.27 Aligned_cols=76 Identities=34% Similarity=0.428 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
......|||-||..+.+|.-|.++|..||.|.. |++|..|.+.+|||||++.+.++|..||..|||+.+++|.|.|
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 345789999999999999999999999999988 8999999999999999999999999999999999999999876
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.3e-12 Score=105.83 Aligned_cols=89 Identities=26% Similarity=0.334 Sum_probs=72.7
Q ss_pred ccccCCcccccccccccCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHH
Q 031063 68 NVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVE 147 (166)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~ 147 (166)
..+...+|+..+. +.+.+....-..|||.||+.++|+|.|+++|++||.|+.|..- +.||||.|.+.++|.
T Consensus 237 gn~~tVdWAep~~---e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~------rDYaFVHf~eR~dav 307 (506)
T KOG0117|consen 237 GNAITVDWAEPEE---EPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP------RDYAFVHFAEREDAV 307 (506)
T ss_pred CCcceeeccCccc---CCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc------cceeEEeecchHHHH
Confidence 3455567765522 2233355667899999999999999999999999999986544 349999999999999
Q ss_pred HHHHHhCCcEeCCeecee
Q 031063 148 AAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 148 ~Al~~l~g~~l~gr~i~~ 165 (166)
+|++.|||++|+|.+|.+
T Consensus 308 kAm~~~ngkeldG~~iEv 325 (506)
T KOG0117|consen 308 KAMKETNGKELDGSPIEV 325 (506)
T ss_pred HHHHHhcCceecCceEEE
Confidence 999999999999999865
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.34 E-value=1.4e-12 Score=111.43 Aligned_cols=77 Identities=16% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--------EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--------VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--------i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
.....++|||||||+++++++|+++|.+++.... .+.+...++.+|||||+|.+.++|..|| .|||..|.|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 4456789999999999999999999997621100 1222223556899999999999999999 599999999
Q ss_pred eeceeC
Q 031063 161 LSPKKK 166 (166)
Q Consensus 161 r~i~~k 166 (166)
+.|+++
T Consensus 250 ~~l~v~ 255 (509)
T TIGR01642 250 VFLKIR 255 (509)
T ss_pred ceeEec
Confidence 998763
No 55
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.33 E-value=5.1e-12 Score=107.80 Aligned_cols=72 Identities=25% Similarity=0.353 Sum_probs=61.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCc--eeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGN--VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 162 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~--i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~ 162 (166)
.+..+|||+|||..+++++|+++|++||. |..+.+.+..+..+|+|||+|.+.++|.+|+..|||+.|+|+.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 35678999999999999999999999998 6554443333345899999999999999999999999999986
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=1.5e-12 Score=102.02 Aligned_cols=65 Identities=31% Similarity=0.589 Sum_probs=60.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.+|||||||..+++.+|+.+|++||.|.+ |+.+ ||||...+...++.||+.|||+.|+|..|.|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEE
Confidence 57999999999999999999999999988 5533 99999999999999999999999999999874
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.30 E-value=1.8e-11 Score=74.44 Aligned_cols=53 Identities=38% Similarity=0.474 Sum_probs=46.6
Q ss_pred HHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 110 LAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 110 l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
|+++|++||.|..+.+.+.. +|+|||+|.+.++|..|++.|||..++|+.|++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V 53 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKV 53 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 67899999999996665533 689999999999999999999999999999987
No 58
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.25 E-value=2e-11 Score=91.55 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=69.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcc-CceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETA-GNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~-G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
+......-+||+.+|..+.+.++..+|.+| |.+.. +.+++.||.++|||||+|.+.+.|+-|-+.||++.|.|+-|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345567789999999999999999999998 66655 457889999999999999999999999999999999998876
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
+
T Consensus 124 c 124 (214)
T KOG4208|consen 124 C 124 (214)
T ss_pred e
Confidence 4
No 59
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.1e-11 Score=102.46 Aligned_cols=74 Identities=30% Similarity=0.496 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEE-EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i-~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+..+|+|.||||.+...+|+.+|+.||.|.+| +-.+..|+-+|||||.|.+..+|..|++.|||.+|+||+|-|
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAV 190 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAV 190 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEE
Confidence 47899999999999999999999999999883 334446777899999999999999999999999999999865
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.20 E-value=7e-11 Score=89.72 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHH----HhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAG----LFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~----~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.+..+|||.||+..+..++|+. +|++||.|..|+..+ +.+.||-|||.|.+.+.|..|+++|+|+.+.|+++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k-t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK-TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC-CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 4455999999999999999887 999999999876654 7899999999999999999999999999999999875
No 61
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.4e-11 Score=96.17 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 87 ~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.....+...|||..|.+.++.++|.-+|+.||.|.. |++|..||.+..||||+|.+.+.+++|.-+|++..|++|.|.
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 344577899999999999999999999999999987 999999999999999999999999999999999999999997
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
|
T Consensus 313 V 313 (479)
T KOG0415|consen 313 V 313 (479)
T ss_pred e
Confidence 6
No 62
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.15 E-value=2.6e-11 Score=97.51 Aligned_cols=74 Identities=36% Similarity=0.506 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..++||||+|++++++|.|+++|.+||+|.+ +++|+.+++++||+||+|.+.+...+++. ..-+.|+|+.|..|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 6889999999999999999999999999988 78899999999999999999999998886 35667888887654
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=6.4e-11 Score=92.17 Aligned_cols=66 Identities=35% Similarity=0.506 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
.++++||||.|...-.|+|++.+|..||.|++ .+.....|.+||++||.|.++.+|..||..|||.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgS 83 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGS 83 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccc
Confidence 36899999999999999999999999999999 4555557999999999999999999999999985
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.5e-10 Score=93.57 Aligned_cols=74 Identities=12% Similarity=0.257 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.-++|||..+..+.+++||+..|+.||+|.. +-+++..+.++||||++|.+......|+..||-+.|+|+.|||
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRV 284 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 284 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEec
Confidence 4578999999999999999999999999988 6777878899999999999999999999999999999999987
No 65
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.08 E-value=1.1e-10 Score=93.84 Aligned_cols=74 Identities=35% Similarity=0.503 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+||||+|+.++++++++++|++||.|.. +++|..+.+.+|||||+|.+++.+.+++. ..-+.|.|+++.||
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEe
Confidence 4679999999999999999999999998877 78999999999999999999999999986 58889999998876
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.08 E-value=6.1e-10 Score=94.37 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||.+|...+...+|+.+|++||.|.- |+.+..+...++||||++.+.++|.+||+.||.++|+||.|-|
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 3456789999999999999999999999999977 7777777788999999999999999999999999999999865
No 67
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.06 E-value=5.2e-10 Score=87.02 Aligned_cols=75 Identities=32% Similarity=0.465 Sum_probs=67.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....+|+|.||++.|.++||+++|..||.+.. +.+|+ .|.+.|.|-|.|...++|.+|++.+||..++|+.|+.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 344588999999999999999999999998877 45554 7999999999999999999999999999999999763
No 68
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.05 E-value=2.4e-10 Score=88.20 Aligned_cols=76 Identities=30% Similarity=0.458 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...+.+||.|.|..+++.+.|...|.+|-.... +++|+.||+++|||||.|.+..++..|+..|||..++.|+|+.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 356899999999999999999999999977655 9999999999999999999999999999999999999999863
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.05 E-value=3.8e-10 Score=98.17 Aligned_cols=70 Identities=29% Similarity=0.450 Sum_probs=64.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.++||||+|+..+++.||..+|+.||+|..|++.. ++|+|||.+....+|++|+.+|+.+.+.++.|+++
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 58999999999999999999999999999976654 48999999999999999999999999999999764
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.02 E-value=4.9e-10 Score=92.33 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=65.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.+..++|||.|||+++||..|++-|..||.|....+ -+.|+++| .|.|.++++|++|+..|||..|+||.|+|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhh-hccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 456788999999999999999999999999988322 34688877 899999999999999999999999999873
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=8.7e-10 Score=91.09 Aligned_cols=68 Identities=32% Similarity=0.471 Sum_probs=61.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 95 ~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.|||.||+.+++..+|.++|+.||.|.. +..|. .| ++|| ||.|.++++|.+|++.|||..+.|+.|.+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 3999999999999999999999999988 55554 34 9999 99999999999999999999999999865
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.01 E-value=3.2e-10 Score=89.11 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=62.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+.....+|+||||.+.++..||+..|++||.|.+ |+ ++|+||.|+..++|..|++.|||.++.|++++|
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeee
Confidence 3457889999999999999999999999999977 43 459999999999999999999999999999876
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.1e-09 Score=94.60 Aligned_cols=74 Identities=34% Similarity=0.456 Sum_probs=62.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeEEEec-CCCC----CcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYD-KVTG----RSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~-~~tg----~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..+|||.||+++.+.+++..+|..+|.|..+.+. +..+ .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.+|
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999884222 1222 244999999999999999999999999999998764
No 74
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.5e-09 Score=85.79 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=62.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHH-HhCCcEeCCeeceeC
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ-QFNGYVSNKLSPKKK 166 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~-~l~g~~l~gr~i~~k 166 (166)
+....-.+||||||...+++.+|+++|.+||+|+.|..-.. +|+|||+|.+.+.|+.|.+ .+|...|+|+.|+++
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 34455689999999999999999999999999999544432 5699999999999999876 466678999998764
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.92 E-value=2.7e-09 Score=89.02 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=64.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
........|||+|||++++..+|+++|..||.|+. |......++..+||||+|.+.++++.||++ +-..|+++.+.+
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~V 361 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNV 361 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEE
Confidence 33445566999999999999999999999999988 544433455559999999999999999986 577899998876
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 362 e 362 (419)
T KOG0116|consen 362 E 362 (419)
T ss_pred E
Confidence 4
No 76
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.2e-09 Score=87.77 Aligned_cols=66 Identities=30% Similarity=0.331 Sum_probs=61.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..|||| +++++..|.+.|+.+|.+.. +.+|. | +-|||||.|.+.++|++|++.||...|.|++|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ri 69 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRI 69 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEe
Confidence 368999 99999999999999999988 66676 5 9999999999999999999999999999999985
No 77
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.87 E-value=2.3e-09 Score=83.25 Aligned_cols=76 Identities=29% Similarity=0.406 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.......+||||+.+.++.+++..+|+.||.|.. +..|+..|+.+||+||+|.+.+.++.|+. |||..|.|+.+.|
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 4456789999999999999999999999999974 78888889999999999999999999998 9999999999875
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=2.7e-09 Score=92.18 Aligned_cols=73 Identities=25% Similarity=0.360 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEec--CCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYD--KVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~--~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
...+|+|.|||+..+..+++++|..||.+..+.+. ...+.++|||||+|-+..+|..|+++|.++.|.||.|.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhh
Confidence 36799999999999999999999999999984433 34577899999999999999999999999999999874
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.83 E-value=1.4e-08 Score=81.48 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--------E-EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--------V-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--------i-~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
...+..|||.|||.++|-+++.++|++||.|.. | .+....|+.+|-|.+.|...+.++.|++.|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345678999999999999999999999999865 2 3334469999999999999999999999999999999
Q ss_pred eecee
Q 031063 161 LSPKK 165 (166)
Q Consensus 161 r~i~~ 165 (166)
+.|+|
T Consensus 211 ~~~rV 215 (382)
T KOG1548|consen 211 KKLRV 215 (382)
T ss_pred cEEEE
Confidence 99987
No 80
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=2e-09 Score=81.66 Aligned_cols=77 Identities=26% Similarity=0.257 Sum_probs=67.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEE-EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i-~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..+.+++|||+|+...++||-|.++|-+.|.|..+ +.+-..++.+ ||||.|.++..+.-|++.+||..+.+++|+++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34558899999999999999999999999999884 4444456666 99999999999999999999999999998875
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=6.9e-09 Score=87.56 Aligned_cols=73 Identities=27% Similarity=0.289 Sum_probs=65.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.....++|+|-|||..|++++|+.+|+.||+|+.| +++-..+|.+||+|.|..+|++|++++++.++.|++|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~i---r~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREI---RETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhh---hcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 45668899999999999999999999999999884 33455789999999999999999999999999999875
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=2.3e-08 Score=76.43 Aligned_cols=64 Identities=19% Similarity=0.435 Sum_probs=57.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
.++|||+|++.+.+++|..+|..||.+..+.+. .||+||+|.+.-+|..|+..+||.+|.|-.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERL 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee------cccceeccCchhhhhcccchhcCceecceee
Confidence 469999999999999999999999999886554 3699999999999999999999999998764
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.62 E-value=1.9e-07 Score=71.35 Aligned_cols=71 Identities=25% Similarity=0.268 Sum_probs=58.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEe-cCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIY-DKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~-~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
...-++|||.+||.++...||..+|..|-..+. +.+ ++.....+.+|||+|.+..+|.+|+.+|||..++=
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc
Confidence 345789999999999999999999999977766 322 22223345799999999999999999999998864
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.56 E-value=3.9e-07 Score=61.52 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=58.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcc--CceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETA--GNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~--G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
++|.|.|||...+.++|.+++... |...- +.+|-.++-+.|||||.|.+++.|.+-.+.++|.....
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 689999999999999999988654 44443 78888899999999999999999999999999987653
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.56 E-value=2.4e-07 Score=77.49 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
....-|-+.+|||.+|++||.++|+.++ |+.+++.+.+|+..|-|||+|.+++++++|++ .|...++.|-|.|
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEV 80 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEV 80 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEE
Confidence 3456677889999999999999999995 67777778889999999999999999999997 4888888888765
No 86
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.47 E-value=3e-07 Score=79.87 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=64.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecC---CCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDK---VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~---~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
....++||||||++.++++.|...|..||.|.. |++.+ +..+.+-+|||-|.+..+|++|++.|+|..+.+++++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 455788999999999999999999999999987 55533 2345567999999999999999999999999998876
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=2.7e-07 Score=78.29 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
......++|||+||...++.+++++...||.+.. ++.|..+|.++||||.+|.+......|+..+||..++++.|.|
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 3456789999999999999999999999999988 7888889999999999999999999999999999999998865
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.33 E-value=7.6e-07 Score=71.95 Aligned_cols=76 Identities=26% Similarity=0.229 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE----------EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM----------VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~----------i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~ 159 (166)
.....+|||-+|+..+++.+|.++|.++|.|.. |-.|++|++.+|-|.|+|.+...|++|++.+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 566789999999999999999999999999865 4568899999999999999999999999999999999
Q ss_pred Ceecee
Q 031063 160 KLSPKK 165 (166)
Q Consensus 160 gr~i~~ 165 (166)
|..|+|
T Consensus 143 gn~ikv 148 (351)
T KOG1995|consen 143 GNTIKV 148 (351)
T ss_pred CCCchh
Confidence 988875
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.24 E-value=1.4e-06 Score=66.61 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=57.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~ 159 (166)
....+.+|||.||..+|+|++|+.+|+.|.....+.+....| -..+|++|.+.+.|..|+..++|..|.
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 445678999999999999999999999997766644443333 358999999999999999999998764
No 90
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.18 E-value=3.7e-06 Score=67.79 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=59.9
Q ss_pred CCcEEEEcCCCCCCcHHHH------HHHhhccCceeEEEecCCCC---Cccc-EE-EEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 92 PDLKLFVGNLPFSVDSAQL------AGLFETAGNVEMVIYDKVTG---RSRG-FG-FVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l------~~~F~~~G~i~~i~~~~~tg---~~~G-~~-FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
+..-+||-+|++.+..|++ .++|.+||.|..|++++.+. ...+ +| ||+|...++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4567899999998887762 47899999999977776541 1122 33 999999999999999999999999
Q ss_pred eecee
Q 031063 161 LSPKK 165 (166)
Q Consensus 161 r~i~~ 165 (166)
|.|+.
T Consensus 193 r~lka 197 (480)
T COG5175 193 RVLKA 197 (480)
T ss_pred ceEee
Confidence 99874
No 91
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=5.6e-06 Score=69.80 Aligned_cols=67 Identities=27% Similarity=0.343 Sum_probs=60.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhh-ccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 031063 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFE-TAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 152 (166)
Q Consensus 86 ~~~~~~~~~~lfVgnLp~~~t~~~l~~~F~-~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~ 152 (166)
.+...++.++||||+||.-++.++|..+|+ -||.|.. |..|++-+..+|-|-|+|.+.....+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 445667899999999999999999999999 5999998 777877899999999999999999999974
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.01 E-value=1.9e-06 Score=72.94 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
+....++||+--|....+.-+|.++|+.+|.|.. ++.|+.+++++|.|||+|.+.+....|| .|.|.-+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 3455688999999999999999999999999988 7889999999999999999999999999 699999999998774
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.01 E-value=1.3e-05 Score=52.35 Aligned_cols=64 Identities=27% Similarity=0.281 Sum_probs=43.8
Q ss_pred cEEEEcCCCCCCcHHH----HHHHhhccCc-eeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 94 LKLFVGNLPFSVDSAQ----LAGLFETAGN-VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~----l~~~F~~~G~-i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.-|||.|||.+.+... |+.++..||. |..| ..|-|+|.|.+.+.|.+|.+.|+|-...|+.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 3589999999998765 5566777864 3333 2468999999999999999999999999999876
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=4.6e-06 Score=63.92 Aligned_cols=70 Identities=29% Similarity=0.374 Sum_probs=61.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
....+.++|.|+..++.+.+|.++|..+|.+...+. .++++||.|...+++..|++.++|..+.|+.|.+
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 455788999999999999999999999999954222 4579999999999999999999999999998864
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.92 E-value=2.9e-05 Score=65.29 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=59.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE---EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM---VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~---i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..+..|-+.+||+.|+++||.++|+..-.+.. +.++. .++..|-|||.|.+.+.|++|+. -|...|+.|-|.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEe
Confidence 46778889999999999999999987755544 34444 58899999999999999999997 4777788877754
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.88 E-value=7.4e-06 Score=65.67 Aligned_cols=73 Identities=25% Similarity=0.405 Sum_probs=63.4
Q ss_pred CCcEEE-EcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLF-VGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lf-VgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...++| |+|+++.+++++|+.+|..+|.|.. +.-++.+|..+|||||.|........++.. ++..++++.+++
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 345555 9999999999999999999999988 455677999999999999999999999976 888899987764
No 97
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.79 E-value=7.6e-05 Score=65.26 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=64.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.+.|-+.|+|++++-+||.++|..|-.+.. +++..+.|...|-|-|-|.+.++|.+|...+++..|..|.+..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 447889999999999999999999987765 4555678999999999999999999999999999999998764
No 98
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.78 E-value=2.8e-05 Score=63.11 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=61.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE----EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM----VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~----i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.....+|||||-|+++++||.+.....|.-.. ..-++.+|+++|||.|...+....++.++.|--..|+|+.-.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 34577999999999999999988877664322 334567899999999999999999999999999999987643
No 99
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=9.1e-05 Score=63.38 Aligned_cols=70 Identities=24% Similarity=0.353 Sum_probs=56.3
Q ss_pred CCCcEEEEcCCCCCCcH------HHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe
Q 031063 91 SPDLKLFVGNLPFSVDS------AQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 161 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~------~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr 161 (166)
.-+..|+|.|+|.--.. .-|.++|+++|.|.. +..+.+ |..+||.|++|.+..+|+.|++.+||+.|+-+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 66788999999865332 346788999999988 344554 55899999999999999999999999987643
No 100
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.72 E-value=0.00012 Score=60.41 Aligned_cols=68 Identities=25% Similarity=0.363 Sum_probs=58.9
Q ss_pred CcEEEEcCCC-CCCcHHHHHHHhhccCceeEE--EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 93 DLKLFVGNLP-FSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp-~~~t~~~l~~~F~~~G~i~~i--~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+..|.|.||. ..+|.+.|..+|.-||.|.+| .+++ +.-|.|.|.+...|+.|++.|+|..+.|+.|++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrv 367 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRV 367 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEE
Confidence 6778888885 568999999999999999883 3332 257899999999999999999999999999986
No 101
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.71 E-value=0.0002 Score=54.78 Aligned_cols=74 Identities=26% Similarity=0.332 Sum_probs=61.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC-Ceecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~-gr~i~~ 165 (166)
...+...+|+.|||..++.+.+..+|.+|....++.+-.. ..|.+||+|.+...+..|...++|..|- ...+++
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~---~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP---RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC---CCceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 4677889999999999999999999999988877544321 2579999999999999999999998876 555543
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.71 E-value=0.00012 Score=59.33 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=59.9
Q ss_pred CCCCCCcEEEEcCCC----CCCc-------HHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 031063 88 SNFSPDLKLFVGNLP----FSVD-------SAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp----~~~t-------~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g 155 (166)
.....+++|.+.|+= +..+ +++|++-.++||.|.. +++++ ...|.+-|.|.+.++|..||+.|+|
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcC
Confidence 345667899999982 2223 3567777899999999 56654 3578999999999999999999999
Q ss_pred cEeCCeecee
Q 031063 156 YVSNKLSPKK 165 (166)
Q Consensus 156 ~~l~gr~i~~ 165 (166)
..++||.|..
T Consensus 337 R~fdgRql~A 346 (382)
T KOG1548|consen 337 RWFDGRQLTA 346 (382)
T ss_pred eeecceEEEE
Confidence 9999999853
No 103
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.66 E-value=0.00017 Score=49.39 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=37.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
..|+|.++...++.++|++.|++||.|..|.+.+ |. --|||.|.+.+.|+.|++++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GD--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T---SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CC--CEEEEEECCcchHHHHHHHHHhc
Confidence 4688888999999999999999999998876664 32 38999999999999999865443
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00017 Score=61.02 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecC---CCCCccc---EEEEEEcCHHHHHHHHHHhC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDK---VTGRSRG---FGFVTMSSVEEVEAAAQQFN 154 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~---~tg~~~G---~~FV~f~~~~~a~~Al~~l~ 154 (166)
.-.++||||+||++++|++|...|..||.+.. +.... .---.+| |.|+.|.++..+..-+.++.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 34589999999999999999999999999865 32111 1123345 99999999999888776553
No 105
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.49 E-value=0.00013 Score=56.89 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=59.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCC----------CCccc----EEEEEEcCHHHHHHHHHHhCCcE
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVT----------GRSRG----FGFVTMSSVEEVEAAAQQFNGYV 157 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~t----------g~~~G----~~FV~f~~~~~a~~Al~~l~g~~ 157 (166)
....||+++||+.++...|+++|++||.|-.|.+.+++ |.+.+ -|.|+|.+...|.++.+.|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999886655432 22232 25689999999999999999999
Q ss_pred eCCee
Q 031063 158 SNKLS 162 (166)
Q Consensus 158 l~gr~ 162 (166)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 106
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.42 E-value=0.00084 Score=45.59 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=47.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeEEE-ecC--------CCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVI-YDK--------VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~-~~~--------~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
..-|.|=+.|.. ....+.++|++||.|.+.. ..+ ........-.|+|+++.+|.+||. .||..++|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 445778788887 5677888999999997732 000 011234588999999999999997 69999998765
Q ss_pred e
Q 031063 164 K 164 (166)
Q Consensus 164 ~ 164 (166)
.
T Consensus 84 v 84 (100)
T PF05172_consen 84 V 84 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.30 E-value=0.00035 Score=57.50 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=51.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcc----CceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETA----GNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~----G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
-.|-..+||+++++.|+.++|..- |..+. +...+-.|+..|-|||.|..+++|+.|+.+ |...|+.|.|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 345567999999999999999632 22333 444555799999999999999999999975 5555665544
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.26 E-value=0.0011 Score=39.70 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=39.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAA 150 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al 150 (166)
+.|-|.|.+.+.. +++..+|..||+|..+..+. ..-+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC----CCcEEEEEECCHHHHHhhC
Confidence 3566777776655 55666999999999866552 2348999999999999985
No 109
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.23 E-value=0.00013 Score=56.79 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=47.0
Q ss_pred HHHHHhh-ccCceeEE-EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 109 QLAGLFE-TAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 109 ~l~~~F~-~~G~i~~i-~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
++...|+ +||+|+++ +.+...-.-+|-.+|.|..+++|++|++.|||-.+.|++|.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ 141 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIH 141 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcce
Confidence 3444445 89999994 66666667789999999999999999999999999999985
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.23 E-value=0.0004 Score=57.17 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=59.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE---E-EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM---V-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~---i-~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...|-+.+||+..+.|+|.++|..|-.-.. | +.-+..|+..|-|||.|.+.+.|.+|...++.....+|.|.+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 556788999999999999999998854433 2 233446999999999999999999999988888777877754
No 111
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.12 E-value=0.0019 Score=48.39 Aligned_cols=64 Identities=23% Similarity=0.307 Sum_probs=54.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~ 159 (166)
......+|.|.+||...++.||+++..+.|.|+. +.+| |+|.|+|-..++.+-|+.+|+...+.
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3345688999999999999999999999999988 4433 58999999999999999998876543
No 112
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.96 E-value=0.0012 Score=59.39 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=62.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 161 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr 161 (166)
.....+.+|||+|..++....+...|..||.|..|.++. | .-|++|.|.+...++.|++.|.|..|+|-
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h--g--q~yayi~yes~~~aq~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH--G--QPYAYIQYESPPAAQAATHDMRGAPLGGP 519 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc--C--CcceeeecccCccchhhHHHHhcCcCCCC
Confidence 556788999999999999999999999999999988775 3 34999999999999999999999998873
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.0037 Score=53.56 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=43.8
Q ss_pred HHHHHHhhccCceeEEEecC-----CCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 108 AQLAGLFETAGNVEMVIYDK-----VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 108 ~~l~~~F~~~G~i~~i~~~~-----~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
|+++.-+.+||.|..|.... .-.-..|-.||+|.+.+++++|.++|+|.+++||.+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVv 485 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVV 485 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEE
Confidence 34556678999998843322 2234456679999999999999999999999999875
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.83 E-value=0.015 Score=47.99 Aligned_cols=75 Identities=25% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~-~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.+.+.|-+|... ++-+.|..+|-.||.|+.|..-+. ..|-|.|++.+..+.++|+..||+..+-|.+|.++
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT---k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT---KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec---ccceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 4566889999999876 556779999999999999533321 24789999999999999999999999988888653
No 115
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.73 E-value=0.0029 Score=52.53 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEec-CCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYD-KVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~-~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
..--+++|+|+-+-++-+-|..+|++||.|..|+.- +..|. -|.|.|.+.+.|..|..+|+|..|..
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyn 215 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYN 215 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccch---hhhhhccchhhHHHHHHhccCCcccC
Confidence 345678999999999999999999999999995544 33222 57999999999999999999986543
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.73 E-value=0.0086 Score=43.25 Aligned_cols=72 Identities=25% Similarity=0.235 Sum_probs=48.1
Q ss_pred CCCCCCcEEEEcCCC------CCCcH---HHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe
Q 031063 88 SNFSPDLKLFVGNLP------FSVDS---AQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 158 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp------~~~t~---~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l 158 (166)
...+++.+|.|.=+. ....+ .+|-+.|..||++.-+.+.. +--+|+|.+...|.+|+. ++|..+
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHH-GCCSEE
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHc-cCCcEE
Confidence 345667888776554 12222 35777888999876443332 356899999999999996 899999
Q ss_pred CCeeceeC
Q 031063 159 NKLSPKKK 166 (166)
Q Consensus 159 ~gr~i~~k 166 (166)
+|+.|+++
T Consensus 95 ~g~~l~i~ 102 (146)
T PF08952_consen 95 NGRTLKIR 102 (146)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99998864
No 117
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=0.0019 Score=50.55 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=54.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 155 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g 155 (166)
...|||.||...++.+.+..-|+.||.|+. |++-...++..+-++|.|...-.|.+|+..++.
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 367999999999999999999999999998 544445688889999999999999999987743
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.69 E-value=0.00014 Score=64.66 Aligned_cols=66 Identities=26% Similarity=0.380 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
..-.++||.||+..+.+++|...|..+|.++. +......++.+|+||++|...+.+.+|+...++.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 34578999999999999999999999998877 4445667999999999999999999999754444
No 119
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.64 E-value=0.0022 Score=53.53 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=51.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcc--CceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc-EeCCeecee
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETA--GNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY-VSNKLSPKK 165 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~--G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~-~l~gr~i~~ 165 (166)
.++|+|||...++..++..+|... |.-..+++. -||+||.+.+...|.+|++.++|. ++.|+.+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeec
Confidence 478999999999999999999764 111113332 479999999999999999999996 477877643
No 120
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.63 E-value=0.00087 Score=54.17 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=55.8
Q ss_pred CCcEEEEcCCCCCCcHHHHH---HHhhccCceeEEEecCCC---CCcc--cEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 92 PDLKLFVGNLPFSVDSAQLA---GLFETAGNVEMVIYDKVT---GRSR--GFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~---~~F~~~G~i~~i~~~~~t---g~~~--G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
....+||-+|+..+..+++- +.|.+||.|..|...+.+ .... .-++|+|...++|..||...+|+.++|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 45678999999887766553 578899999886555432 1111 236999999999999999999999999986
Q ss_pred e
Q 031063 164 K 164 (166)
Q Consensus 164 ~ 164 (166)
+
T Consensus 156 k 156 (327)
T KOG2068|consen 156 K 156 (327)
T ss_pred H
Confidence 4
No 121
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.57 E-value=0.016 Score=37.95 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~ 154 (166)
..+...||+ .|......||.++|+.||.|.. .+-| .-|||...+.+.|..++..+.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 345566676 9999999999999999999976 4433 289999999999999988765
No 122
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.48 E-value=0.002 Score=53.67 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeEE-EecC----C--CCC--------cccEEEEEEcCHHHHHHHHHHhCC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-IYDK----V--TGR--------SRGFGFVTMSSVEEVEAAAQQFNG 155 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i-~~~~----~--tg~--------~~G~~FV~f~~~~~a~~Al~~l~g 155 (166)
-+.++|.+.|||.+-.-+.|.++|..+|.|..| ++++ . .|. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 367899999999999999999999999999884 3333 1 111 245789999999999999987654
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.36 E-value=0.011 Score=47.34 Aligned_cols=57 Identities=21% Similarity=0.071 Sum_probs=43.3
Q ss_pred HHHHHHhhccCceeEEEe--cCCCC-CcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 108 AQLAGLFETAGNVEMVIY--DKVTG-RSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 108 ~~l~~~F~~~G~i~~i~~--~~~tg-~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.++++..++||.|..+++ ++... .-.--.||+|...++|.+|+-.|||..++||.++
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 467788899999988322 22111 1123569999999999999999999999999875
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.30 E-value=0.0063 Score=50.36 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=57.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecC-----CCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDK-----VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~-----~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...|-|.||.+.++.++++.+|.-.|.|.++.+.+ ......-.|||.|.+...+..|.. |.++++-|+.|.|
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 34899999999999999999999999998833222 123445589999999999998874 7788877777654
No 125
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.061 Score=43.24 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=48.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
+.=|-|-+.+... -.-|..+|++||+|...+.- .+| -+-+|.|.+..+|.+||. .||.+|+|..+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~-~ng---NwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-SNG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC-CCC---ceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 4445555676653 34567789999999874433 233 488999999999999997 69999999765
No 126
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.08 E-value=0.0065 Score=53.12 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=61.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+..++||||+...+..+-++.+...||.|..+.++. |||..|..+.....|+..++-..++|+.+.++
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345678999999999999999999999999997755443 99999999999999999999888988877543
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.05 E-value=0.0015 Score=58.74 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=62.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecC-CCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDK-VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 87 ~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~-~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
.++....++||+|||+..+++.+|+..|..+|.|+.|.++. .-++..-||||.|.+.+.+-.|+..+.+..|+.-.+
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 44556789999999999999999999999999999965543 245556699999999999999988888776654433
No 128
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.98 E-value=0.0055 Score=53.12 Aligned_cols=65 Identities=31% Similarity=0.364 Sum_probs=53.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhc-cCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcE
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFET-AGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 157 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~-~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~ 157 (166)
.......|||.||-.-+|.-+|+.++.+ +|.|+..-+|+ .+-.|||.|.+.++|.+.+.+|||..
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk----IKShCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK----IKSHCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH----hhcceeEecccHHHHHHHHHHHhccc
Confidence 3455788999999999999999999995 55565543343 36699999999999999999999974
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.94 E-value=0.003 Score=56.58 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 161 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr 161 (166)
....|||.|.|+..|.++++.++.++|.+.. ...-...|+.+|-+||.|.++.++.+++..+++..+.-+
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 3678999999999999999999999999988 222334699999999999999999999877666554433
No 130
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.94 E-value=0.062 Score=33.22 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=40.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcc----CceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETA----GNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~----G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l 153 (166)
..+|+|.|+. +++.++|+.+|..| +...- ++=|. -|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4679999985 58889999999998 43322 33332 5679999999999999764
No 131
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.74 E-value=0.031 Score=46.17 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=53.2
Q ss_pred CCCcEEEEc--CCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCee
Q 031063 91 SPDLKLFVG--NLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 162 (166)
Q Consensus 91 ~~~~~lfVg--nLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~ 162 (166)
.++..|.+. |--+-++-+-|..+....|.|..|++-+.+|. .|.|+|++.+.|++|.++|||..|..-+
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngV---QAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGV---QAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccce---eeEEeechhHHHHHHHhhcccccccccc
Confidence 444444444 44567888999999999999999544444565 7899999999999999999998765444
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.42 E-value=0.0091 Score=52.75 Aligned_cols=75 Identities=17% Similarity=0.079 Sum_probs=61.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEec-CCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYD-KVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~-~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....|||-.||..+.+.++.++|...-.|+. |.+. --+++-++.|||.|..++++..|...-+-+.++.|.|+|
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 44688999999999999999999998878877 4332 337888999999999988888888766666677777776
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.18 E-value=0.021 Score=42.72 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhc-cCce---eEEE--ecCC--CCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFET-AGNV---EMVI--YDKV--TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~-~G~i---~~i~--~~~~--tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
....+|.|.+||++++++++.+.+.. ++.. ..+. .... ....-..|||.|.+.+++..-.+.++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34679999999999999999986665 4444 2221 1111 11223578999999999999999999977543
No 134
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.08 E-value=0.14 Score=32.08 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=43.1
Q ss_pred CCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 104 SVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 104 ~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.++-++++..+..|+- ..|..|+ +|- ||.|.+..+|+++.+..+|..+.+..|..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~-tGf-----YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDR-TGF-----YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecC-CEE-----EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999864 3455554 333 89999999999999999999988777653
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.62 E-value=0.51 Score=32.54 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=45.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCce-eE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV-EM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i-~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
...+.+...|..+..++|..+.+.+-.. +. |++| ...++-.+.+.|.+.+.|..-.+.+||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344445556666667777666666444 34 4444 33467788999999999999999999987653
No 136
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.19 E-value=0.027 Score=45.26 Aligned_cols=73 Identities=16% Similarity=0.061 Sum_probs=59.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
....+.|+|++.+.+.+.+...++..+|.+.. .........++|++++.|...+.+..|+.....+.+.++.+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 35688999999999999999999999987755 45555678899999999999999999997544456665543
No 137
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.76 E-value=0.23 Score=37.38 Aligned_cols=56 Identities=25% Similarity=0.071 Sum_probs=42.1
Q ss_pred cHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CcEeCCeecee
Q 031063 106 DSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN--GYVSNKLSPKK 165 (166)
Q Consensus 106 t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~--g~~l~gr~i~~ 165 (166)
..+.|+++|..|+.+..+.+-+ +-+-..|.|.+.+.|.+|...++ +..+.|..+++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~ 65 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRV 65 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EE
T ss_pred hHHHHHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEE
Confidence 3478999999999988854443 23467899999999999999999 99999988764
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.60 E-value=0.22 Score=31.61 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=36.6
Q ss_pred EEEEc-CCCCCCcHHHHHHHhhccCceeE-----EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 95 KLFVG-NLPFSVDSAQLAGLFETAGNVEM-----VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 95 ~lfVg-nLp~~~t~~~l~~~F~~~G~i~~-----i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
++||. +=-..++..+|..++...+.|.. |.... -|.||+-.. +.|..+++.|++..+.|+.++++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 35552 23456788899999887766644 43332 289998765 47888999999999999998763
No 139
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.18 E-value=0.047 Score=46.30 Aligned_cols=66 Identities=26% Similarity=0.244 Sum_probs=49.6
Q ss_pred EEEEcCCCCCCc-HHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 95 KLFVGNLPFSVD-SAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 95 ~lfVgnLp~~~t-~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.|-+.-.++... .++|..+|.+||.|+.+..+.. --.|.|+|.+..+|-.|.. .++..|++|.|++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl 440 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKL 440 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhc-cccceecCceeEE
Confidence 333444455544 5789999999999998544432 3478999999999977764 7999999999986
No 140
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=92.58 E-value=0.41 Score=38.43 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=39.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHH
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVE 144 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~ 144 (166)
......-||++||+.++.-.||+..+.+.|.+-. +.+.. +.|-||+.|.+..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG----HFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeeec----CCcceeEecCCcc
Confidence 3344566999999999999999999988877654 55542 5788999997643
No 141
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.19 E-value=0.31 Score=42.35 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhc--cCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--cEeCCeece
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFET--AGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG--YVSNKLSPK 164 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~--~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g--~~l~gr~i~ 164 (166)
...+.|.+..||...-.|+++.+|.. |-.+..+.+.-.. -=||+|.+..+|+.|.+.|.. .+|-|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 45677888999999999999999964 4444332222111 238999999999999876544 346666653
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.14 E-value=0.24 Score=42.76 Aligned_cols=67 Identities=19% Similarity=0.344 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhc----------------------------cCceeE--EEecCCCCCcccEEEEEE
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFET----------------------------AGNVEM--VIYDKVTGRSRGFGFVTM 140 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~----------------------------~G~i~~--i~~~~~tg~~~G~~FV~f 140 (166)
....++-|+|++......+|.++... .|.... +..|-.+..+.|||||.|
T Consensus 359 ~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm 438 (549)
T KOG4660|consen 359 DRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINM 438 (549)
T ss_pred cchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEee
Confidence 34556677777766666665554421 233222 455656677889999999
Q ss_pred cCHHHHHHHHHHhCCcE
Q 031063 141 SSVEEVEAAAQQFNGYV 157 (166)
Q Consensus 141 ~~~~~a~~Al~~l~g~~ 157 (166)
-+.+.+..+.+++||+.
T Consensus 439 ~sp~ai~~F~kAFnGk~ 455 (549)
T KOG4660|consen 439 TSPEAIIRFYKAFNGKK 455 (549)
T ss_pred cCHHHHHHHHHHHcCCc
Confidence 99999999999999974
No 143
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.76 E-value=2.1 Score=31.05 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=49.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcH-HHHH---HHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 85 EDGSNFSPDLKLFVGNLPFSVDS-AQLA---GLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 85 ~~~~~~~~~~~lfVgnLp~~~t~-~~l~---~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
.......+-.+|.|.=|..++.. +|++ ..++.||.|..|..- | +.-|.|.|.+...|-.|+.+++..
T Consensus 78 kk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---G--rqsavVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 78 KKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---G--RQSAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred cccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---C--CceEEEEehhhHHHHHHHHhhcCC
Confidence 34445667788999877777653 4554 456789999985433 2 348999999999999999988763
No 144
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.32 E-value=0.034 Score=46.66 Aligned_cols=71 Identities=25% Similarity=0.228 Sum_probs=58.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE---EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM---VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~---i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...+++-|.|+|....++-+..+..+||.++. +.+|.++-.- -|+|...+.+..|+..++|..+....+++
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavv----nvty~~~~~~~~ai~kl~g~Q~en~~~k~ 151 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVV----NVTYSAQQQHRQAIHKLNGPQLENQHLKV 151 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHH----HHHHHHHHHHHHHHHhhcchHhhhhhhhc
Confidence 34577999999999999999999999999987 5666654432 37899999999999999998887766543
No 145
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=81.45 E-value=3.7 Score=27.00 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEc
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMS 141 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~ 141 (166)
...-|||||++..+.+.-...+.+..+.-.-++.-...+ ..||.|-++.
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeC
Confidence 355699999999998877777776655444433333233 6799998874
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=80.74 E-value=0.3 Score=40.73 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=50.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~ 159 (166)
.++++|++|...+...++-+.|..+|+|..-.+. .|-..-+|-+.|........|++ ++|.++.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a--sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA--SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh--ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 4789999999999999999999999998762222 34445688899999888888886 5666543
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=80.70 E-value=0.42 Score=36.97 Aligned_cols=69 Identities=33% Similarity=0.410 Sum_probs=56.0
Q ss_pred CCCCCcEEEEcC----CCCCCcHHHHHHHhhccCceeEE--EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe
Q 031063 89 NFSPDLKLFVGN----LPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 158 (166)
Q Consensus 89 ~~~~~~~lfVgn----Lp~~~t~~~l~~~F~~~G~i~~i--~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l 158 (166)
..+...+++.|+ |...++++.+...|+..|.++.+ ..+. .|+++-++|+++......-.++..+++..+
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 445567889999 88899999999999999999873 3343 388899999999988888888887777543
No 148
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=76.50 E-value=5.2 Score=26.95 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=32.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCH
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSV 143 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~ 143 (166)
...-||||+++..+.+.-...+-+.++.-.-++.-..+ .-.||+|-++.+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN-TESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC-CCCCcEEEecCCC
Confidence 35569999999998877666666655443333222322 3349999987653
No 149
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=71.04 E-value=2.2 Score=39.05 Aligned_cols=59 Identities=27% Similarity=0.247 Sum_probs=46.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE-EE-ecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM-VI-YDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 158 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~-~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l 158 (166)
-+.++-|..-..+...|..+|.+||.|.. +. ++- -++.|+|...+.|-.|+++++|.++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkev 359 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEV 359 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcc
Confidence 34455556666777889999999999988 33 332 3889999999999999999999763
No 150
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.42 E-value=19 Score=31.84 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhcc----CceeEEEecC------------CCCC---------------------
Q 031063 90 FSPDLKLFVGNLPFS-VDSAQLAGLFETA----GNVEMVIYDK------------VTGR--------------------- 131 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~-~t~~~l~~~F~~~----G~i~~i~~~~------------~tg~--------------------- 131 (166)
....++|-|.|+.|+ +..++|..+|..| |.|..|-+.+ ..|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999997 7889999998766 4555521100 0111
Q ss_pred ----------------cccEEEEEEcCHHHHHHHHHHhCCcEeCCee
Q 031063 132 ----------------SRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 162 (166)
Q Consensus 132 ----------------~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~ 162 (166)
.--||.|+|.+.+.|....+.|+|.++..-.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 1237889999999999999999999887544
No 151
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=68.31 E-value=6.1 Score=26.06 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcc-CceeEEEecCCCCCcccEEEEEEcC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETA-GNVEMVIYDKVTGRSRGFGFVTMSS 142 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~-G~i~~i~~~~~tg~~~G~~FV~f~~ 142 (166)
...-||||+++..+.+.-...+-+.| +.-.-++... +....||.|-++..
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~-~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWS-SNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEe-CCCCCCcEEEecCC
Confidence 35569999999988876555554442 2211122222 23356799988754
No 152
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=65.90 E-value=13 Score=28.97 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=34.3
Q ss_pred CcHHHHHHHhhccCceeE--------------EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 105 VDSAQLAGLFETAGNVEM--------------VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 105 ~t~~~l~~~F~~~G~i~~--------------i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
+++..|.+.|.++|-+.- ++.-+..++..|-.+..+ -.|+.|+||.||
T Consensus 162 mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~------------k~Gy~L~~R~IR 223 (236)
T KOG3003|consen 162 MTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVT------------KKGYKLNGRVIR 223 (236)
T ss_pred HHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEe------------ccCcccCCeeec
Confidence 478889999999997643 323244456677776654 368999999986
No 153
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=65.81 E-value=15 Score=22.59 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=13.9
Q ss_pred HHHHHHhhccCceeEE
Q 031063 108 AQLAGLFETAGNVEMV 123 (166)
Q Consensus 108 ~~l~~~F~~~G~i~~i 123 (166)
.+||++|+..|.|.-+
T Consensus 9 ~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVL 24 (62)
T ss_pred HHHHHHHHhcCcEEEE
Confidence 5799999999999773
No 154
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=64.75 E-value=12 Score=27.98 Aligned_cols=71 Identities=21% Similarity=0.256 Sum_probs=46.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEE--EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 158 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i--~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l 158 (166)
........+++++++..+...++...|..+|.+... ...........+.++.+.....+..+.........
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKI 292 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceee
Confidence 345667889999999999999999999999999662 22222233344445555555555555544444333
No 155
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.13 E-value=27 Score=29.97 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=51.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcc-CceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETA-GNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~-G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
...|+|-.+|-.++-.||-.+...+ -.|.. +++|. --++=...|.|.+.++|..-.+.+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999988765 33444 55543 2334477999999999999999999987653
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.85 E-value=9.3 Score=26.50 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=22.5
Q ss_pred CcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcC
Q 031063 105 VDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSS 142 (166)
Q Consensus 105 ~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~ 142 (166)
++.++|++.|..|..++. ..++.. .+.|++.|.|..
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~--gh~g~aiv~F~~ 65 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQ--GHTGFAIVEFNK 65 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETT--EEEEEEEEE--S
T ss_pred cCHHHHHHHHHhcCCceeEECcCCC--CCcEEEEEEECC
Confidence 455889999999988876 455543 568999999964
No 157
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.21 E-value=33 Score=29.13 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=46.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 161 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr 161 (166)
...|=|-++|.....+||...|+.||.-.. |.|-. .-.+|..|.+...|..|+- |.+.++.=|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-----dthalaVFss~~~AaeaLt-~kh~~lKiR 454 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-----DTHALAVFSSVNRAAEALT-LKHDWLKIR 454 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-----cceeEEeecchHHHHHHhh-ccCceEEee
Confidence 466778899999999999999999977544 54432 1278999999999999986 444444433
No 158
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=51.58 E-value=16 Score=28.68 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM 122 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~ 122 (166)
.......+|+-|+|..++++.|.++.+++|.+..
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 4566788999999999999999999999987655
No 159
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=41.84 E-value=54 Score=22.99 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCcHHHHHHHhhccCceeE-------EEecCCCCCcccEEEEEEcCHHHHHH
Q 031063 104 SVDSAQLAGLFETAGNVEM-------VIYDKVTGRSRGFGFVTMSSVEEVEA 148 (166)
Q Consensus 104 ~~t~~~l~~~F~~~G~i~~-------i~~~~~tg~~~G~~FV~f~~~~~a~~ 148 (166)
.+..+||++-.++.-.... +..+-.+|++.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4678888887766332222 1223346788889976 777777664
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.31 E-value=53 Score=27.55 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=46.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCC----CCCcccEEEEEEcCHHHHHHHHHHhCCcEeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKV----TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~----tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~ 159 (166)
.-.+|.|.+||...+++++.+....+-.-.. ....+. -..-.+.+||.|...++...-.+.++|+++-
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3567889999999999998877665432222 111100 1122567899999999988888899998754
No 161
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.04 E-value=52 Score=21.14 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.0
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCcE
Q 031063 132 SRGFGFVTMSSVEEVEAAAQQFNGYV 157 (166)
Q Consensus 132 ~~G~~FV~f~~~~~a~~Al~~l~g~~ 157 (166)
.+||-||+=.+..++..|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 68999999999999999998776654
No 162
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.97 E-value=44 Score=20.73 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=22.8
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCcEeCCee
Q 031063 134 GFGFVTMSSVEEVEAAAQQFNGYVSNKLS 162 (166)
Q Consensus 134 G~~FV~f~~~~~a~~Al~~l~g~~l~gr~ 162 (166)
.+++|+|.+..+|.+|-+.+....+.++-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 37899999999999998877766555543
No 163
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.43 E-value=62 Score=26.23 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=25.8
Q ss_pred CCCCCcEEEEcCCCCC------------CcHHHHHHHhhccCceeE
Q 031063 89 NFSPDLKLFVGNLPFS------------VDSAQLAGLFETAGNVEM 122 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~------------~t~~~l~~~F~~~G~i~~ 122 (166)
......+||+.+||-. -++..|+..|+.||.|..
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~ 190 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRN 190 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhcccee
Confidence 3445667888888742 345679999999999987
No 164
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=35.30 E-value=21 Score=23.59 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHh
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLF 114 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F 114 (166)
...++|-|.|||...++++|++..
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 347889999999999999999864
No 165
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.74 E-value=93 Score=27.04 Aligned_cols=59 Identities=17% Similarity=0.102 Sum_probs=41.0
Q ss_pred EEcCCCCCCcH---HHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 97 FVGNLPFSVDS---AQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 97 fVgnLp~~~t~---~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
+||||+.-... ..++++=.+||.|-.+.+-. .-.|...+.+.|+.|+.. ||..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~-------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS-------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC-------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 47787654443 45566667899987643322 236778889999999974 8888888874
No 166
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=33.84 E-value=85 Score=22.36 Aligned_cols=44 Identities=14% Similarity=0.373 Sum_probs=26.0
Q ss_pred CCcHHHHHHHhhccCce-e-E-EEe-----cCCCCCcccEEEEEEcCHHHHHH
Q 031063 104 SVDSAQLAGLFETAGNV-E-M-VIY-----DKVTGRSRGFGFVTMSSVEEVEA 148 (166)
Q Consensus 104 ~~t~~~l~~~F~~~G~i-~-~-i~~-----~~~tg~~~G~~FV~f~~~~~a~~ 148 (166)
..+.+||++-+.+.-.| . + |+. .-..|.+.|||.| |++.+.+..
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888877663332 1 1 322 2235677777766 677666554
No 167
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=33.03 E-value=58 Score=21.13 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHhhccCceeE-------EEecCCCCCcccEEEEEEcCHHHHHH
Q 031063 103 FSVDSAQLAGLFETAGNVEM-------VIYDKVTGRSRGFGFVTMSSVEEVEA 148 (166)
Q Consensus 103 ~~~t~~~l~~~F~~~G~i~~-------i~~~~~tg~~~G~~FV~f~~~~~a~~ 148 (166)
...+.++|++.+.+.-.+.. +...-..+.+.|||.| |++.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 45567788877765322222 2223334666777766 677766654
No 168
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=32.51 E-value=5.9 Score=34.75 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=49.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEe--cCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY--DKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~--~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
..+.+||.|++++++-++|..++..+-.+..+.+ +....+..-++.|+|...-....|+.++|+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4578999999999999999999888755544221 11122334577899987777777777788876544
No 169
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=32.44 E-value=1.2e+02 Score=22.98 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=36.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcc-CceeEEEecC-CCC--CcccEEEEEEcCHHHHHHHHHH
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETA-GNVEMVIYDK-VTG--RSRGFGFVTMSSVEEVEAAAQQ 152 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~-G~i~~i~~~~-~tg--~~~G~~FV~f~~~~~a~~Al~~ 152 (166)
.+++|.. .++++|.++..+. |.+..+.+++ ..+ ..+|--||+|...++|.+.++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4556654 5666666665544 4666654432 233 4578889999999999998764
No 170
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.09 E-value=40 Score=18.37 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=10.1
Q ss_pred CCCcHHHHHHHhhccC
Q 031063 103 FSVDSAQLAGLFETAG 118 (166)
Q Consensus 103 ~~~t~~~l~~~F~~~G 118 (166)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998754
No 171
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=30.59 E-value=93 Score=20.96 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCcHHHHHHHhhc-cCceeE-EEec-----CCCCCcccEEEEEEcCHHHHHHH
Q 031063 104 SVDSAQLAGLFET-AGNVEM-VIYD-----KVTGRSRGFGFVTMSSVEEVEAA 149 (166)
Q Consensus 104 ~~t~~~l~~~F~~-~G~i~~-i~~~-----~~tg~~~G~~FV~f~~~~~a~~A 149 (166)
+.+..+|++-..+ |+.=.. |+.+ -..|++.|||.| |++.+.+.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 5677888776654 452222 3222 224667777766 6776665543
No 172
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.84 E-value=1.6e+02 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhcc
Q 031063 90 FSPDLKLFVGNLPFS-VDSAQLAGLFETA 117 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~-~t~~~l~~~F~~~ 117 (166)
..+..+|-|-|+.|+ +..++|...|+.|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf 171 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSF 171 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhh
Confidence 456778889999986 7788998888765
No 173
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=26.77 E-value=63 Score=25.73 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCce
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNV 120 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i 120 (166)
.....|+|||+.++..-+.++++..-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3456799999999999999988775444
No 174
>PF15063 TC1: Thyroid cancer protein 1
Probab=26.13 E-value=42 Score=21.51 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=23.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCcee
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVE 121 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~ 121 (166)
.++--+.||=.+++.++|+.+|..-|...
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 34445788889999999999999998753
No 175
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=25.87 E-value=49 Score=19.61 Aligned_cols=11 Identities=45% Similarity=0.960 Sum_probs=8.4
Q ss_pred cccEEEEEEcC
Q 031063 132 SRGFGFVTMSS 142 (166)
Q Consensus 132 ~~G~~FV~f~~ 142 (166)
.+|||||...+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 57999999886
No 176
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=23.90 E-value=31 Score=28.59 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=33.3
Q ss_pred HHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 108 AQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 108 ~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
..+.++..+.|.|.. -++. --+-|.|||..-.+++++++++.+.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~r---tFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYR---TFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHH---HhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 456666778888766 1111 124578899999999999999988875
No 177
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=23.87 E-value=1.3e+02 Score=17.03 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=21.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCce
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNV 120 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i 120 (166)
..+|+.+.....+.++|.++...+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 456777766578889999999998763
No 178
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.80 E-value=86 Score=24.53 Aligned_cols=30 Identities=40% Similarity=0.616 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhh--ccCcee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFE--TAGNVE 121 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~--~~G~i~ 121 (166)
...-++|||||+.++..-|.+++. .||.+.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~ 127 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVR 127 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEE
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccc
Confidence 456789999999999999988886 455443
No 179
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=23.15 E-value=2.4e+02 Score=19.20 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=13.7
Q ss_pred EEEEcCCCCCCcHHHHHH
Q 031063 95 KLFVGNLPFSVDSAQLAG 112 (166)
Q Consensus 95 ~lfVgnLp~~~t~~~l~~ 112 (166)
.||||+++...+.+.|++
T Consensus 7 ~l~~G~~~~~~~~~~l~~ 24 (138)
T smart00195 7 HLYLGSYSSALNLALLKK 24 (138)
T ss_pred CeEECChhHcCCHHHHHH
Confidence 499999998776655555
No 180
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.98 E-value=1e+02 Score=22.24 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.2
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCcE
Q 031063 132 SRGFGFVTMSSVEEVEAAAQQFNGYV 157 (166)
Q Consensus 132 ~~G~~FV~f~~~~~a~~Al~~l~g~~ 157 (166)
..||-||+....+++..+++.+.|..
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 58999999998899999998877643
No 181
>PRK15464 cold shock-like protein CspH; Provisional
Probab=22.81 E-value=44 Score=20.89 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=8.3
Q ss_pred cccEEEEEEcC
Q 031063 132 SRGFGFVTMSS 142 (166)
Q Consensus 132 ~~G~~FV~f~~ 142 (166)
.+|||||+=.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 47999997554
No 182
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.51 E-value=89 Score=23.64 Aligned_cols=66 Identities=15% Similarity=0.022 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCCCCcH-----HHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe
Q 031063 92 PDLKLFVGNLPFSVDS-----AQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 161 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~-----~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr 161 (166)
-...+++.+++..+-. .....+|.+|-+.....+- ++.++--|.|.+.+.|..|...++++.+.|+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL----RSFRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH----HhhceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 3456777777765433 2334555544433321111 1233556899999999999999999999887
No 183
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.06 E-value=89 Score=24.19 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=18.7
Q ss_pred HHHHHHhhc-cCceeEEEecCCCCCcccEEEEEEcCHH
Q 031063 108 AQLAGLFET-AGNVEMVIYDKVTGRSRGFGFVTMSSVE 144 (166)
Q Consensus 108 ~~l~~~F~~-~G~i~~i~~~~~tg~~~G~~FV~f~~~~ 144 (166)
++|.+.|.+ ||.- ..+...|.|+||+|++--
T Consensus 89 edL~~EF~~~~~~~------~~~~~~RPY~FieFD~~I 120 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKN------IIQPASRPYAFIEFDTFI 120 (216)
T ss_pred HHHHHHHHHhcccc------cCCccCCCeeEEehhHHH
Confidence 455555543 5542 123467889999998643
No 184
>PRK15463 cold shock-like protein CspF; Provisional
Probab=21.59 E-value=50 Score=20.58 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=8.3
Q ss_pred cccEEEEEEcC
Q 031063 132 SRGFGFVTMSS 142 (166)
Q Consensus 132 ~~G~~FV~f~~ 142 (166)
.+|||||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK15463 15 KSGKGLITPSD 25 (70)
T ss_pred CCceEEEecCC
Confidence 37999997644
No 185
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=21.52 E-value=52 Score=20.80 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=8.0
Q ss_pred cccEEEEEEcC
Q 031063 132 SRGFGFVTMSS 142 (166)
Q Consensus 132 ~~G~~FV~f~~ 142 (166)
.||||||+=.+
T Consensus 12 ~KGfGFI~~~~ 22 (74)
T PRK09937 12 AKGFGFICPEG 22 (74)
T ss_pred CCCeEEEeeCC
Confidence 48999996543
No 186
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=21.44 E-value=2.8e+02 Score=18.95 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=34.2
Q ss_pred EEEcCCCCCCcHH----------HHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHH
Q 031063 96 LFVGNLPFSVDSA----------QLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAA 150 (166)
Q Consensus 96 lfVgnLp~~~t~~----------~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al 150 (166)
-||-+|..+.-+| ++.++..++|.-.. |.+|..++ .-||++++.+.+...+++
T Consensus 5 af~m~l~p~~~eEYk~rH~~vWPE~~a~lk~agi~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 5 AFVMKLKPGKHEEYKRRHDAVWPELLALLKEAGIRNYSIFLDEEEN--LLFGYWEYEDFEADMAKM 68 (105)
T ss_pred EEEEEeCcchHHHHHHhhccccHHHHHHHHHcCCceeEEEecCCcc--cEEEEEEEcChHHHHHHH
Confidence 3555565554443 56677788886555 77776444 459999999666655554
No 187
>PF14893 PNMA: PNMA
Probab=20.93 E-value=73 Score=26.32 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhh
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFE 115 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~ 115 (166)
..+..+.|.|.+||.+|++++|++.+.
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHH
Confidence 345567899999999999999887764
No 188
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=20.90 E-value=51 Score=20.43 Aligned_cols=11 Identities=55% Similarity=1.090 Sum_probs=8.2
Q ss_pred cccEEEEEEcC
Q 031063 132 SRGFGFVTMSS 142 (166)
Q Consensus 132 ~~G~~FV~f~~ 142 (166)
.+|||||+=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 37999997544
No 189
>PRK14998 cold shock-like protein CspD; Provisional
Probab=20.84 E-value=54 Score=20.63 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=8.2
Q ss_pred cccEEEEEEcC
Q 031063 132 SRGFGFVTMSS 142 (166)
Q Consensus 132 ~~G~~FV~f~~ 142 (166)
.+|||||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T PRK14998 12 AKGFGFICPEG 22 (73)
T ss_pred CCceEEEecCC
Confidence 48999997543
No 190
>PRK10943 cold shock-like protein CspC; Provisional
Probab=20.05 E-value=53 Score=20.34 Aligned_cols=11 Identities=55% Similarity=1.117 Sum_probs=8.2
Q ss_pred cccEEEEEEcC
Q 031063 132 SRGFGFVTMSS 142 (166)
Q Consensus 132 ~~G~~FV~f~~ 142 (166)
.+|||||+=.+
T Consensus 14 ~kGfGFI~~~~ 24 (69)
T PRK10943 14 SKGFGFITPAD 24 (69)
T ss_pred CCCcEEEecCC
Confidence 38999997543
Done!