Query 031063
Match_columns 166
No_of_seqs 243 out of 1424
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 13:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.2E-22 4E-27 137.3 10.7 77 90-166 16-94 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 5.3E-22 1.8E-26 136.6 10.9 75 91-165 4-80 (110)
3 3p5t_L Cleavage and polyadenyl 99.9 5.7E-22 2E-26 131.3 6.1 73 94-166 2-78 (90)
4 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.6E-21 2.9E-25 124.3 10.2 76 91-166 4-81 (87)
5 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9E-21 3.1E-25 123.7 9.7 77 90-166 4-82 (85)
6 3md1_A Nuclear and cytoplasmic 99.8 1.4E-20 4.6E-25 122.3 10.2 73 94-166 2-76 (83)
7 2cqc_A Arginine/serine-rich sp 99.8 1.3E-20 4.4E-25 125.4 10.3 79 88-166 10-90 (95)
8 2dgo_A Cytotoxic granule-assoc 99.8 2.3E-20 7.8E-25 128.6 11.5 79 88-166 10-90 (115)
9 1p27_B RNA-binding protein 8A; 99.8 9.8E-21 3.3E-25 128.6 9.5 78 89-166 19-98 (106)
10 2x1f_A MRNA 3'-END-processing 99.8 1.1E-20 3.7E-25 126.4 9.5 75 92-166 1-77 (96)
11 3n9u_C Cleavage and polyadenyl 99.8 1E-20 3.5E-25 137.8 10.1 76 91-166 53-132 (156)
12 2cq0_A Eukaryotic translation 99.8 1.3E-20 4.6E-25 127.4 10.0 79 88-166 10-90 (103)
13 3ns6_A Eukaryotic translation 99.8 2.6E-21 8.9E-26 130.7 6.1 75 92-166 5-88 (100)
14 2lkz_A RNA-binding protein 5; 99.8 3.4E-21 1.2E-25 129.4 6.6 77 90-166 6-90 (95)
15 2cpz_A CUG triplet repeat RNA- 99.8 1.9E-20 6.4E-25 129.1 10.4 78 89-166 21-100 (115)
16 2krb_A Eukaryotic translation 99.8 8E-21 2.7E-25 123.3 7.7 73 93-165 1-80 (81)
17 2lxi_A RNA-binding protein 10; 99.8 3E-21 1E-25 128.4 5.8 72 94-165 2-77 (91)
18 3ulh_A THO complex subunit 4; 99.8 2.8E-20 9.5E-25 126.5 10.6 79 87-166 23-103 (107)
19 1x5u_A Splicing factor 3B subu 99.8 1.5E-20 5E-25 127.5 9.2 78 89-166 11-90 (105)
20 2khc_A Testis-specific RNP-typ 99.8 1.4E-20 4.9E-25 130.2 9.3 78 89-166 36-115 (118)
21 1whw_A Hypothetical protein ri 99.8 1.6E-20 5.4E-25 126.1 9.2 77 90-166 5-83 (99)
22 2la6_A RNA-binding protein FUS 99.8 2.3E-20 7.9E-25 125.4 10.0 78 89-166 9-96 (99)
23 2e5h_A Zinc finger CCHC-type a 99.8 2.2E-20 7.5E-25 124.1 9.7 78 89-166 12-91 (94)
24 4f25_A Polyadenylate-binding p 99.8 1.4E-20 4.8E-25 130.1 9.1 71 93-165 5-77 (115)
25 3s7r_A Heterogeneous nuclear r 99.8 2.3E-20 7.8E-25 122.4 9.7 77 89-166 7-85 (87)
26 2dnz_A Probable RNA-binding pr 99.8 2E-20 6.7E-25 124.6 9.4 76 91-166 3-80 (95)
27 2cqp_A RNA-binding protein 12; 99.8 2.2E-20 7.4E-25 125.2 9.6 77 90-166 12-90 (98)
28 2dgs_A DAZ-associated protein 99.8 2.1E-20 7.3E-25 125.5 9.5 77 89-166 6-84 (99)
29 2ek1_A RNA-binding protein 12; 99.8 1.3E-20 4.6E-25 125.4 8.4 76 91-166 13-90 (95)
30 2dnm_A SRP46 splicing factor; 99.8 1E-20 3.5E-25 127.9 7.5 78 89-166 9-88 (103)
31 2div_A TRNA selenocysteine ass 99.8 3.7E-20 1.3E-24 124.2 10.0 77 89-165 5-88 (99)
32 1x4e_A RNA binding motif, sing 99.8 6.9E-21 2.4E-25 124.4 6.2 76 91-166 3-80 (85)
33 1oo0_B CG8781-PA, drosophila Y 99.8 3.2E-20 1.1E-24 126.9 9.5 78 89-166 22-101 (110)
34 1x5s_A Cold-inducible RNA-bind 99.8 2.2E-20 7.6E-25 126.0 8.5 78 89-166 8-87 (102)
35 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.6E-20 5.5E-25 126.7 7.8 78 89-166 8-87 (102)
36 2do4_A Squamous cell carcinoma 99.8 4.5E-20 1.5E-24 124.1 9.9 77 89-166 13-91 (100)
37 2cpf_A RNA binding motif prote 99.8 3E-20 1E-24 124.5 9.0 76 91-166 3-83 (98)
38 2cpe_A RNA-binding protein EWS 99.8 3E-20 1E-24 127.6 9.0 78 89-166 11-98 (113)
39 2dng_A Eukaryotic translation 99.8 6.3E-20 2.2E-24 124.1 10.5 76 89-166 11-88 (103)
40 2jrs_A RNA-binding protein 39; 99.8 3.4E-20 1.2E-24 127.0 9.2 79 88-166 21-101 (108)
41 2dgv_A HnRNP M, heterogeneous 99.8 4.8E-20 1.6E-24 122.0 9.6 77 90-166 5-81 (92)
42 1x4h_A RNA-binding protein 28; 99.8 4.2E-20 1.4E-24 126.3 9.6 78 89-166 11-96 (111)
43 2dhg_A TRNA selenocysteine ass 99.8 5.4E-20 1.9E-24 124.5 9.9 77 89-166 5-85 (104)
44 2ywk_A Putative RNA-binding pr 99.8 5.5E-20 1.9E-24 122.4 9.6 77 89-166 12-90 (95)
45 1s79_A Lupus LA protein; RRM, 99.8 1.9E-20 6.6E-25 127.3 7.4 75 90-166 8-84 (103)
46 2nlw_A Eukaryotic translation 99.8 4.1E-20 1.4E-24 125.8 8.7 77 89-165 11-94 (105)
47 2cph_A RNA binding motif prote 99.8 4.6E-20 1.6E-24 125.3 9.0 78 89-166 11-92 (107)
48 2kxn_B Transformer-2 protein h 99.8 4.3E-20 1.5E-24 130.4 9.1 78 89-166 42-121 (129)
49 2dgp_A Bruno-like 4, RNA bindi 99.8 3.2E-20 1.1E-24 126.1 8.1 78 89-166 9-91 (106)
50 2dnh_A Bruno-like 5, RNA bindi 99.8 8.8E-20 3E-24 123.6 10.1 77 89-166 11-92 (105)
51 2cq3_A RNA-binding protein 9; 99.8 2.1E-19 7.1E-24 121.5 11.9 79 88-166 10-88 (103)
52 2m2b_A RNA-binding protein 10; 99.8 2E-20 6.7E-25 132.2 7.0 77 89-166 19-103 (131)
53 1u6f_A Tcubp1, RNA-binding pro 99.8 7.7E-20 2.6E-24 129.9 10.1 79 88-166 37-117 (139)
54 3ex7_B RNA-binding protein 8A; 99.8 3.6E-20 1.2E-24 129.5 8.3 78 89-166 18-97 (126)
55 4a8x_A RNA-binding protein wit 99.8 5.1E-20 1.7E-24 120.7 8.5 74 92-165 3-79 (88)
56 3ucg_A Polyadenylate-binding p 99.8 7.3E-20 2.5E-24 120.3 9.2 73 93-166 6-80 (89)
57 1x5t_A Splicing factor 3B subu 99.8 5.3E-20 1.8E-24 122.7 8.6 76 91-166 3-81 (96)
58 2mss_A Protein (musashi1); RNA 99.8 1.6E-20 5.6E-25 119.8 5.7 71 95-166 1-73 (75)
59 2kt5_A RNA and export factor-b 99.8 9.1E-20 3.1E-24 127.3 10.0 78 88-166 30-109 (124)
60 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.9E-19 6.7E-24 121.6 11.2 78 89-166 11-88 (103)
61 2d9p_A Polyadenylate-binding p 99.8 7.8E-20 2.7E-24 123.6 9.2 76 89-166 11-88 (103)
62 2dh8_A DAZ-associated protein 99.8 8.3E-20 2.8E-24 123.8 9.3 77 89-166 12-90 (105)
63 2cqd_A RNA-binding region cont 99.8 9.1E-20 3.1E-24 125.8 9.5 78 88-166 12-91 (116)
64 2do0_A HnRNP M, heterogeneous 99.8 2.1E-19 7.3E-24 123.4 11.3 77 89-166 11-89 (114)
65 1wi8_A EIF-4B, eukaryotic tran 99.8 8.9E-20 3.1E-24 123.6 9.1 76 89-166 11-89 (104)
66 2fy1_A RNA-binding motif prote 99.8 6.6E-20 2.3E-24 127.0 8.6 76 90-166 4-81 (116)
67 2wbr_A GW182, gawky, LD47780P; 99.8 6.8E-20 2.3E-24 120.7 8.0 70 93-166 7-76 (89)
68 2err_A Ataxin-2-binding protei 99.8 1.1E-19 3.8E-24 124.5 9.2 78 89-166 25-102 (109)
69 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-19 4.1E-24 121.5 9.0 75 89-166 5-85 (96)
70 1p1t_A Cleavage stimulation fa 99.8 5.4E-20 1.8E-24 124.4 7.2 75 92-166 7-83 (104)
71 2fc9_A NCL protein; structure 99.8 1.4E-19 4.7E-24 122.0 9.1 76 89-166 11-86 (101)
72 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.7E-19 9.2E-24 129.6 11.2 78 89-166 35-114 (156)
73 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.6E-19 5.4E-24 128.0 9.8 78 89-166 59-138 (140)
74 2cq4_A RNA binding motif prote 99.8 7.5E-20 2.6E-24 125.9 7.6 74 92-166 24-99 (114)
75 1x4a_A Splicing factor, argini 99.8 5E-19 1.7E-23 120.8 11.4 77 89-166 18-94 (109)
76 1wel_A RNA-binding protein 12; 99.8 6.5E-20 2.2E-24 128.2 7.0 75 90-165 22-98 (124)
77 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-19 4.1E-24 124.4 7.9 77 89-166 21-99 (109)
78 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.2E-20 1.1E-24 118.9 4.4 72 94-166 1-74 (77)
79 2dgw_A Probable RNA-binding pr 99.8 4.2E-19 1.5E-23 117.3 9.9 75 89-166 6-82 (91)
80 2cqg_A TDP-43, TAR DNA-binding 99.8 6.3E-19 2.1E-23 119.1 11.0 76 89-166 11-88 (103)
81 2e5g_A U6 snRNA-specific termi 99.8 6.7E-19 2.3E-23 117.2 10.5 73 90-166 5-77 (94)
82 2cpy_A RNA-binding protein 12; 99.8 2.3E-19 8E-24 123.7 8.6 75 89-165 11-88 (114)
83 2cpi_A CCR4-NOT transcription 99.8 1.8E-19 6.2E-24 123.7 8.0 78 89-166 11-96 (111)
84 2ki2_A SS-DNA binding protein 99.8 2.3E-20 7.7E-25 123.2 3.2 72 94-166 2-75 (90)
85 2a3j_A U1 small nuclear ribonu 99.8 3E-19 1E-23 125.8 9.1 76 89-165 25-104 (127)
86 2jwn_A Embryonic polyadenylate 99.8 2.6E-19 8.9E-24 124.8 8.7 74 92-166 35-110 (124)
87 2fc8_A NCL protein; structure 99.8 4.3E-19 1.5E-23 119.6 9.5 77 89-166 11-87 (102)
88 2jvr_A Nucleolar protein 3; RN 99.8 2.7E-19 9.4E-24 123.3 8.5 75 90-166 25-100 (111)
89 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-19 7.9E-24 129.9 8.6 78 89-166 66-145 (158)
90 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.1E-20 2.4E-24 123.5 5.4 76 89-166 15-93 (100)
91 1wg5_A Heterogeneous nuclear r 99.8 2.4E-19 8.2E-24 121.7 8.0 75 89-165 11-88 (104)
92 1sjq_A Polypyrimidine tract-bi 99.8 8.7E-19 3E-23 119.5 10.5 74 89-166 12-87 (105)
93 2db1_A Heterogeneous nuclear r 99.8 2.8E-19 9.6E-24 124.2 8.2 74 90-165 14-92 (118)
94 1fj7_A Nucleolin RBD1, protein 99.8 3.2E-20 1.1E-24 125.0 3.1 76 90-166 14-90 (101)
95 1x5o_A RNA binding motif, sing 99.8 6.2E-19 2.1E-23 121.2 9.7 72 89-161 21-94 (114)
96 1wez_A HnRNP H', FTP-3, hetero 99.8 1.8E-19 6.2E-24 122.2 6.8 75 89-165 11-86 (102)
97 2dis_A Unnamed protein product 99.8 2.4E-19 8.2E-24 122.2 7.3 76 91-166 6-87 (109)
98 1x4b_A Heterogeneous nuclear r 99.8 3.3E-19 1.1E-23 123.0 8.0 75 91-166 25-101 (116)
99 3q2s_C Cleavage and polyadenyl 99.8 1.9E-19 6.4E-24 138.6 7.5 75 92-166 67-145 (229)
100 2cpx_A Hypothetical protein FL 99.8 1.4E-19 4.8E-24 124.5 6.1 78 89-166 21-100 (115)
101 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.9E-19 3.4E-23 127.9 10.9 77 89-165 68-146 (165)
102 2hgl_A HNRPF protein, heteroge 99.8 1.7E-19 5.9E-24 128.5 6.6 76 89-166 40-120 (136)
103 1iqt_A AUF1, heterogeneous nuc 99.8 7.9E-20 2.7E-24 116.5 4.3 71 95-166 1-73 (75)
104 1fjc_A Nucleolin RBD2, protein 99.8 2.6E-19 8.8E-24 119.4 6.4 75 89-166 12-86 (96)
105 2f3j_A RNA and export factor b 99.8 1.3E-18 4.5E-23 129.0 10.2 77 89-166 84-162 (177)
106 4f02_A Polyadenylate-binding p 99.8 1.5E-18 5.2E-23 131.5 10.8 76 90-165 12-89 (213)
107 2j8a_A Histone-lysine N-methyl 99.8 4E-19 1.4E-23 124.6 6.7 73 94-166 3-91 (136)
108 2la4_A Nuclear and cytoplasmic 99.8 2.1E-18 7.3E-23 116.0 10.0 72 91-166 25-96 (101)
109 2lmi_A GRSF-1, G-rich sequence 99.8 2.2E-19 7.5E-24 122.5 5.1 75 89-165 7-86 (107)
110 1nu4_A U1A RNA binding domain; 99.8 6.2E-19 2.1E-23 117.7 7.0 76 89-165 4-83 (97)
111 2ytc_A PRE-mRNA-splicing facto 99.8 3E-18 1E-22 111.7 10.1 74 89-166 8-82 (85)
112 2dnq_A RNA-binding protein 4B; 99.8 2.2E-18 7.4E-23 113.8 9.4 72 89-166 4-75 (90)
113 2lea_A Serine/arginine-rich sp 99.8 2.1E-19 7.2E-24 127.7 4.8 78 89-166 43-122 (135)
114 2dnn_A RNA-binding protein 12; 99.8 8.9E-19 3E-23 120.3 7.7 72 92-166 15-88 (109)
115 2cq1_A PTB-like protein L; RRM 99.8 4.5E-18 1.5E-22 115.3 10.9 73 89-165 11-85 (101)
116 2cpj_A Non-POU domain-containi 99.8 2E-18 6.7E-23 115.9 8.6 75 88-166 10-84 (99)
117 2e5j_A Methenyltetrahydrofolat 99.8 1.7E-18 5.9E-23 115.9 8.3 74 89-166 15-89 (97)
118 3egn_A RNA-binding protein 40; 99.8 6.3E-19 2.1E-23 125.9 6.4 77 89-165 41-124 (143)
119 1x4c_A Splicing factor, argini 99.8 4.5E-18 1.5E-22 116.1 10.3 73 89-166 11-88 (108)
120 3r27_A HnRNP L, heterogeneous 99.8 2.8E-18 9.4E-23 116.0 9.1 74 88-165 16-91 (100)
121 2xnq_A Nuclear polyadenylated 99.8 4.8E-18 1.7E-22 114.0 10.2 71 89-165 18-89 (97)
122 2dha_A FLJ20171 protein; RRM d 99.8 1.4E-18 4.8E-23 121.8 7.6 73 91-165 21-99 (123)
123 1x4d_A Matrin 3; structural ge 99.8 2E-18 6.7E-23 117.3 8.1 73 89-165 11-86 (102)
124 2jvo_A Nucleolar protein 3; nu 99.8 3.5E-18 1.2E-22 116.9 9.4 71 89-165 27-97 (108)
125 2dnp_A RNA-binding protein 14; 99.8 4.7E-18 1.6E-22 112.1 9.5 72 89-166 5-76 (90)
126 3lqv_A PRE-mRNA branch site pr 99.8 4.9E-18 1.7E-22 116.8 9.7 75 90-165 5-79 (115)
127 1x4g_A Nucleolysin TIAR; struc 99.8 5.6E-18 1.9E-22 115.6 9.9 73 90-166 22-94 (109)
128 1why_A Hypothetical protein ri 99.8 4.8E-18 1.6E-22 113.6 9.3 73 90-166 14-88 (97)
129 2xs2_A Deleted in azoospermia- 99.8 7.9E-19 2.7E-23 118.4 5.4 71 92-165 8-80 (102)
130 1wex_A Hypothetical protein (r 99.8 4.5E-18 1.6E-22 115.8 9.0 73 89-165 11-85 (104)
131 2dgt_A RNA-binding protein 30; 99.8 7.6E-18 2.6E-22 111.5 9.9 72 89-166 6-77 (92)
132 2lcw_A RNA-binding protein FUS 99.6 7.9E-20 2.7E-24 126.2 0.0 77 90-166 4-90 (116)
133 1fxl_A Paraneoplastic encephal 99.7 7.9E-18 2.7E-22 121.4 10.5 73 93-165 2-76 (167)
134 2cqh_A IGF-II mRNA-binding pro 99.7 2.7E-18 9.2E-23 113.9 7.3 72 90-166 5-78 (93)
135 1wf1_A RNA-binding protein RAL 99.7 6.2E-18 2.1E-22 115.6 9.3 71 90-166 24-95 (110)
136 2cpd_A Apobec-1 stimulating pr 99.7 1.3E-17 4.5E-22 111.8 10.8 73 88-166 10-84 (99)
137 3md3_A Nuclear and cytoplasmic 99.7 1.3E-17 4.4E-22 120.1 11.4 78 89-166 83-162 (166)
138 2dgu_A Heterogeneous nuclear r 99.7 8.3E-18 2.8E-22 113.7 9.6 72 89-166 7-78 (103)
139 2ad9_A Polypyrimidine tract-bi 99.7 5.1E-18 1.8E-22 118.2 8.6 73 89-165 27-101 (119)
140 2hgm_A HNRPF protein, heteroge 99.7 2E-18 6.7E-23 121.5 6.5 76 89-166 38-116 (126)
141 2dnl_A Cytoplasmic polyadenyla 99.7 2E-18 6.7E-23 119.0 6.4 64 90-153 5-72 (114)
142 2kvi_A Nuclear polyadenylated 99.7 4.5E-18 1.5E-22 113.7 7.7 71 89-165 6-77 (96)
143 1wg1_A KIAA1579 protein, homol 99.7 4.4E-18 1.5E-22 112.0 7.5 69 92-165 4-72 (88)
144 1b7f_A Protein (SXL-lethal pro 99.7 7.1E-18 2.4E-22 122.0 9.2 74 92-165 2-77 (168)
145 1whx_A Hypothetical protein ri 99.7 6.7E-18 2.3E-22 116.0 8.1 70 92-165 9-78 (111)
146 1x5p_A Negative elongation fac 99.7 2.3E-17 7.8E-22 110.3 10.4 72 89-166 11-82 (97)
147 2g4b_A Splicing factor U2AF 65 99.7 1.5E-17 5.2E-22 120.9 10.1 76 91-166 92-169 (172)
148 1l3k_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 123.6 9.7 77 89-166 9-87 (196)
149 2hvz_A Splicing factor, argini 99.7 3.8E-18 1.3E-22 114.8 5.9 70 94-166 1-70 (101)
150 2hgn_A Heterogeneous nuclear r 99.7 9.7E-19 3.3E-23 125.1 3.0 74 89-165 42-117 (139)
151 2hzc_A Splicing factor U2AF 65 99.7 1.8E-17 6E-22 108.3 8.3 71 91-166 4-85 (87)
152 2cq2_A Hypothetical protein LO 99.7 1.9E-17 6.6E-22 114.4 8.8 72 90-165 22-100 (114)
153 3pgw_S U1-70K; protein-RNA com 99.7 1.6E-17 5.6E-22 138.6 10.1 76 91-166 100-177 (437)
154 2i2y_A Fusion protein consists 99.7 1.5E-17 5.2E-22 119.6 8.5 75 89-166 69-143 (150)
155 1x4f_A Matrin 3; structural ge 99.7 1.1E-17 3.8E-22 115.3 7.2 72 90-165 22-96 (112)
156 3beg_B Splicing factor, argini 99.7 9.5E-18 3.2E-22 115.9 6.6 68 91-163 14-81 (115)
157 2qfj_A FBP-interacting repress 99.7 3.1E-17 1.1E-21 123.3 10.0 75 91-165 123-199 (216)
158 2e44_A Insulin-like growth fac 99.7 1.5E-17 5E-22 110.8 6.9 74 89-166 11-87 (96)
159 2yh0_A Splicing factor U2AF 65 99.7 4.3E-17 1.5E-21 121.0 10.0 77 90-166 111-189 (198)
160 4f02_A Polyadenylate-binding p 99.7 3E-17 1E-21 124.3 9.1 73 92-166 102-176 (213)
161 2qfj_A FBP-interacting repress 99.7 3.1E-17 1.1E-21 123.3 8.6 74 92-165 27-102 (216)
162 1b7f_A Protein (SXL-lethal pro 99.7 9.4E-17 3.2E-21 116.1 10.2 77 90-166 86-166 (168)
163 2diu_A KIAA0430 protein; struc 99.7 6.4E-17 2.2E-21 107.5 8.5 67 91-165 6-78 (96)
164 1l3k_A Heterogeneous nuclear r 99.7 1E-16 3.6E-21 118.7 9.9 75 91-166 102-178 (196)
165 3md3_A Nuclear and cytoplasmic 99.7 8.6E-17 2.9E-21 115.8 8.8 71 94-165 1-73 (166)
166 1fxl_A Paraneoplastic encephal 99.7 1.1E-16 3.8E-21 115.3 9.0 73 91-163 86-160 (167)
167 2cjk_A Nuclear polyadenylated 99.7 5.8E-17 2E-21 117.2 7.4 72 92-165 2-75 (167)
168 3pgw_A U1-A; protein-RNA compl 99.7 1.6E-16 5.4E-21 124.5 10.4 76 89-165 5-84 (282)
169 3nmr_A Cugbp ELAV-like family 99.7 1.2E-16 4.2E-21 116.0 8.8 68 92-159 2-73 (175)
170 2cjk_A Nuclear polyadenylated 99.7 2.6E-17 9E-22 119.1 5.0 74 92-166 86-161 (167)
171 3tyt_A Heterogeneous nuclear r 99.7 2E-16 6.9E-21 119.6 9.9 71 92-165 3-74 (205)
172 1sjr_A Polypyrimidine tract-bi 99.7 1.3E-16 4.6E-21 116.6 8.2 74 90-165 43-118 (164)
173 1fje_B Nucleolin RBD12, protei 99.7 1.4E-16 4.7E-21 116.3 8.2 74 90-166 96-169 (175)
174 2voo_A Lupus LA protein; RNA-b 99.7 3E-16 1E-20 117.7 9.6 72 93-166 109-182 (193)
175 2bz2_A Negative elongation fac 99.7 1.8E-16 6.2E-21 110.5 7.7 71 89-165 35-105 (121)
176 3zzy_A Polypyrimidine tract-bi 99.7 2.9E-16 9.8E-21 110.8 8.7 73 90-165 25-100 (130)
177 2e5i_A Heterogeneous nuclear r 99.7 3.8E-16 1.3E-20 109.5 9.3 69 93-165 25-96 (124)
178 3d2w_A TAR DNA-binding protein 99.7 4.1E-16 1.4E-20 103.0 8.6 70 89-165 7-78 (89)
179 3nmr_A Cugbp ELAV-like family 99.7 3.4E-16 1.2E-20 113.7 9.0 75 91-166 93-172 (175)
180 2pe8_A Splicing factor 45; RRM 99.7 1.1E-15 3.6E-20 104.2 10.5 75 91-165 6-88 (105)
181 1fje_B Nucleolin RBD12, protei 99.6 3.7E-17 1.3E-21 119.3 3.1 76 89-165 9-85 (175)
182 3tyt_A Heterogeneous nuclear r 99.6 5.2E-16 1.8E-20 117.4 7.8 72 91-162 121-194 (205)
183 3smz_A Protein raver-1, ribonu 99.6 1.6E-15 5.4E-20 118.9 10.8 75 91-165 93-169 (284)
184 1wf0_A TDP-43, TAR DNA-binding 99.6 4.5E-16 1.5E-20 102.1 5.2 70 91-165 3-72 (88)
185 2yh0_A Splicing factor U2AF 65 99.6 1.4E-16 4.8E-21 118.2 2.7 73 92-165 3-82 (198)
186 2g4b_A Splicing factor U2AF 65 99.6 1.9E-16 6.3E-21 115.1 3.1 69 92-165 3-82 (172)
187 3u1l_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.5E-20 117.7 7.7 73 90-166 131-224 (240)
188 3sde_A Paraspeckle component 1 99.6 2.4E-15 8.2E-20 117.2 9.0 73 89-165 18-90 (261)
189 3smz_A Protein raver-1, ribonu 99.6 3.3E-15 1.1E-19 117.1 9.8 77 89-166 180-259 (284)
190 2adc_A Polypyrimidine tract-bi 99.6 2.6E-15 8.9E-20 114.8 8.7 73 90-165 31-104 (229)
191 2dit_A HIV TAT specific factor 99.6 1.3E-14 4.6E-19 99.4 10.4 75 89-166 11-97 (112)
192 2ghp_A U4/U6 snRNA-associated 99.6 3E-15 1E-19 117.8 7.9 76 89-165 206-285 (292)
193 3pgw_A U1-A; protein-RNA compl 99.6 9.4E-15 3.2E-19 114.4 10.4 74 89-165 203-277 (282)
194 1qm9_A Polypyrimidine tract-bi 99.6 4.9E-15 1.7E-19 110.3 7.0 70 93-165 3-73 (198)
195 2ghp_A U4/U6 snRNA-associated 99.6 1.1E-14 3.8E-19 114.5 8.8 76 87-165 35-112 (292)
196 1jmt_A Splicing factor U2AF 35 99.6 3E-15 1E-19 101.7 4.7 67 98-165 20-100 (104)
197 3sde_A Paraspeckle component 1 99.5 1.6E-14 5.5E-19 112.5 9.3 74 91-165 94-173 (261)
198 1qm9_A Polypyrimidine tract-bi 99.5 2.6E-14 9E-19 106.3 8.3 72 91-165 118-191 (198)
199 3v4m_A Splicing factor U2AF 65 99.5 3.9E-14 1.3E-18 96.4 8.1 75 91-165 3-91 (105)
200 2adc_A Polypyrimidine tract-bi 99.5 5.6E-14 1.9E-18 107.3 9.8 72 91-165 149-222 (229)
201 3tht_A Alkylated DNA repair pr 99.5 3.8E-14 1.3E-18 114.8 9.0 66 89-158 14-81 (345)
202 3ue2_A Poly(U)-binding-splicin 99.5 9E-14 3.1E-18 96.5 9.2 74 92-165 19-103 (118)
203 3s6e_A RNA-binding protein 39; 99.4 1E-12 3.6E-17 90.6 7.4 72 92-165 6-87 (114)
204 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.3E-12 4.3E-17 88.2 7.0 59 103-166 27-85 (100)
205 1owx_A Lupus LA protein, SS-B, 99.2 4.2E-11 1.4E-15 83.2 6.7 76 86-165 11-90 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 3.8E-10 1.3E-14 74.2 6.5 70 90-166 4-81 (91)
207 3dxb_A Thioredoxin N-terminall 99.0 4.4E-10 1.5E-14 85.2 7.1 61 105-165 141-207 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 1.1E-09 3.8E-14 72.4 5.3 71 89-166 11-90 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.6 3.1E-07 1E-11 62.1 8.7 71 91-165 19-94 (117)
210 1wey_A Calcipressin 1; structu 97.8 6.2E-05 2.1E-09 50.4 7.0 70 92-165 4-78 (104)
211 1whv_A Poly(A)-specific ribonu 97.6 0.00036 1.2E-08 46.1 8.0 57 89-153 12-69 (100)
212 2dhx_A Poly (ADP-ribose) polym 97.6 0.00057 1.9E-08 45.6 9.0 69 90-165 5-78 (104)
213 1uw4_A UPF3X; nonsense mediate 97.4 0.00083 2.9E-08 43.9 7.3 67 94-160 2-72 (91)
214 1wwh_A Nucleoporin 35, nucleop 97.3 0.0013 4.3E-08 45.1 8.0 66 91-162 22-87 (119)
215 3ctr_A Poly(A)-specific ribonu 97.1 0.00078 2.7E-08 44.6 4.7 53 94-154 7-60 (101)
216 3pq1_A Poly(A) RNA polymerase; 96.8 0.0007 2.4E-08 56.6 3.0 56 92-151 52-107 (464)
217 3p3d_A Nucleoporin 53; structu 96.6 0.0036 1.2E-07 43.5 5.5 71 93-165 7-93 (132)
218 2l08_A Regulator of nonsense t 96.4 0.0053 1.8E-07 40.5 4.7 68 93-160 9-80 (97)
219 3d45_A Poly(A)-specific ribonu 92.2 0.65 2.2E-05 39.1 8.5 56 92-154 439-494 (507)
220 4f25_A Polyadenylate-binding p 79.5 0.39 1.3E-05 31.7 0.1 19 91-109 95-113 (115)
221 2g0c_A ATP-dependent RNA helic 64.4 12 0.00041 22.4 4.4 64 95-165 2-71 (76)
222 2v94_A RPS24, 30S ribosomal pr 52.0 36 0.0012 22.3 5.3 46 103-149 37-89 (107)
223 1xn9_A 30S ribosomal protein S 49.0 21 0.00071 23.2 3.7 46 103-149 28-80 (101)
224 4e8u_A Putative uncharacterize 46.2 50 0.0017 23.6 5.6 46 95-142 14-71 (172)
225 3ts2_A Protein LIN-28 homolog 41.9 5.2 0.00018 27.9 -0.1 28 108-141 2-29 (148)
226 3u5c_Y RP50, 40S ribosomal pro 40.9 45 0.0015 22.8 4.5 45 103-148 33-84 (135)
227 1ywx_A 30S ribosomal protein S 37.4 70 0.0024 20.7 4.9 45 103-148 28-79 (102)
228 3mfb_A Uncharacterized protein 37.1 43 0.0015 23.6 4.0 35 105-139 3-42 (157)
229 3lpe_A Putative transcription 34.5 32 0.0011 21.6 2.8 25 132-156 49-73 (92)
230 2xzm_P RPS24E; ribosome, trans 29.4 38 0.0013 23.6 2.7 45 103-148 31-82 (149)
231 2g1d_A 30S ribosomal protein S 26.4 65 0.0022 20.7 3.3 45 103-148 29-80 (98)
232 3fut_A Dimethyladenosine trans 26.3 33 0.0011 26.1 2.1 29 93-122 110-138 (271)
233 3uzu_A Ribosomal RNA small sub 25.1 22 0.00074 27.2 0.9 29 94-122 115-143 (279)
234 3h7h_B Transcription elongatio 24.1 43 0.0015 21.8 2.1 25 132-156 50-74 (106)
235 1i4w_A Mitochondrial replicati 24.1 62 0.0021 25.7 3.4 22 95-116 144-165 (353)
236 1ytr_A Bacteriocin plantaricin 22.6 48 0.0016 15.4 1.5 12 107-118 14-25 (26)
237 3tqs_A Ribosomal RNA small sub 20.7 21 0.0007 26.9 -0.0 27 96-122 99-125 (255)
238 3cam_A Cold-shock domain famil 20.7 39 0.0013 19.9 1.3 11 132-142 12-22 (67)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=137.34 Aligned_cols=77 Identities=32% Similarity=0.522 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..++++|||+|||+++++++|+++|++||.|.. +++|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 455789999999999999999999999999988 77888999999999999999999999999999999999999873
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=5.3e-22 Score=136.64 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.+.++|||+||++++++++|+++|++||.|.. |++|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999999999999999999999999988 7889999999999999999999999999999999999999987
No 3
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=5.7e-22 Score=131.29 Aligned_cols=73 Identities=18% Similarity=0.340 Sum_probs=66.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccC--ceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAG--NVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G--~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.+|||||||+++++++|+++|++|| .|.. ++.|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 5799999999999999999999999 8876 77888899999999999999999999999999999999999875
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=8.6e-21 Score=124.30 Aligned_cols=76 Identities=29% Similarity=0.487 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.+.++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45789999999999999999999999999988 67787899999999999999999999999999999999999873
No 5
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=9e-21 Score=123.68 Aligned_cols=77 Identities=26% Similarity=0.328 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..+.++|||+|||.++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356899999999999999999999999999988 56787899999999999999999999999999999999999873
No 6
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.4e-20 Score=122.30 Aligned_cols=73 Identities=32% Similarity=0.524 Sum_probs=69.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.+|||+|||.++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 58999999999999999999999999988 67788899999999999999999999999999999999999873
No 7
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=125.40 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
....+.++|||+|||+++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999988 6778889999999999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 90 ~ 90 (95)
T 2cqc_A 90 S 90 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=2.3e-20 Score=128.61 Aligned_cols=79 Identities=27% Similarity=0.454 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
......++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999988 6777789999999999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 90 ~ 90 (115)
T 2dgo_A 90 N 90 (115)
T ss_dssp E
T ss_pred E
Confidence 3
No 9
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.8e-21 Score=128.59 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3455789999999999999999999999999988 67788899999999999999999999999999999999999873
No 10
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.1e-20 Score=126.38 Aligned_cols=75 Identities=27% Similarity=0.542 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
+.++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3689999999999999999999999999988 56677889999999999999999999999999999999999873
No 11
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=137.79 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccC--ceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAG--NVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G--~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...++|||||||+++++++|+++|++|| .|.. +++|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 8877 77888999999999999999999999999999999999999874
No 12
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=127.36 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
....+.++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566899999999999999999999999999988 6778889999999999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 90 ~ 90 (103)
T 2cq0_A 90 E 90 (103)
T ss_dssp E
T ss_pred E
Confidence 3
No 13
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=2.6e-21 Score=130.69 Aligned_cols=75 Identities=27% Similarity=0.369 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCC------CCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC-ee
Q 031063 92 PDLKLFVGNLPF------SVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK-LS 162 (166)
Q Consensus 92 ~~~~lfVgnLp~------~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g-r~ 162 (166)
..++|||+|||+ ++++++|+++|++||.|.. |++++.||+++|||||+|.+.++|++|++.|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999988 67889899999999999999999999999999999999 99
Q ss_pred ceeC
Q 031063 163 PKKK 166 (166)
Q Consensus 163 i~~k 166 (166)
|+|+
T Consensus 85 l~V~ 88 (100)
T 3ns6_A 85 LFLY 88 (100)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 9873
No 14
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-21 Score=129.37 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCcee--E--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc----EeCCe
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--M--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY----VSNKL 161 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~--~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~----~l~gr 161 (166)
...-.+|||+|||+++++++|+++|++||.+. . +++|+.+|+++|||||+|.+.++|++|++.|||. .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34567999999999999999999999999653 3 6778899999999999999999999999999996 59999
Q ss_pred eceeC
Q 031063 162 SPKKK 166 (166)
Q Consensus 162 ~i~~k 166 (166)
+|+|+
T Consensus 86 ~i~V~ 90 (95)
T 2lkz_A 86 TIGVD 90 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99873
No 15
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1.9e-20 Score=129.14 Aligned_cols=78 Identities=31% Similarity=0.394 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999988 67788899999999999999999999999999999999999873
No 16
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=8e-21 Score=123.30 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=67.8
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe-ecee
Q 031063 93 DLKLFVGNLPFSV------DSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL-SPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~~~------t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr-~i~~ 165 (166)
.++|||||||.++ ++++|+++|++||.|..+.+.+.+|+++|||||+|.+.++|++|++.|||..++|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 78999999999999999655577999999999999999999999999999999999 8876
No 17
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=3e-21 Score=128.36 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccC-ceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHh-CCcEeCCeecee
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAG-NVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF-NGYVSNKLSPKK 165 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G-~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l-~g~~l~gr~i~~ 165 (166)
++|||+|||+++++++|+++|++|| .|.. +++|+.+|+++|||||+|.+.++|++|++.+ ++..++||.|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 5899999999999999999999999 7877 6788899999999999999999999999987 456899999987
No 18
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=2.8e-20 Score=126.54 Aligned_cols=79 Identities=30% Similarity=0.441 Sum_probs=72.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 87 ~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.......++|||+|||+++++++|+++|++||.|.. +++++ +|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345567899999999999999999999999999988 66677 999999999999999999999999999999999998
Q ss_pred eC
Q 031063 165 KK 166 (166)
Q Consensus 165 ~k 166 (166)
|+
T Consensus 102 V~ 103 (107)
T 3ulh_A 102 IQ 103 (107)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 19
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=127.52 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4566899999999999999999999999999988 56677799999999999999999999999999999999999873
No 20
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.4e-20 Score=130.21 Aligned_cols=78 Identities=29% Similarity=0.413 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4456789999999999999999999999999988 56677889999999999999999999999999999999999873
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=126.06 Aligned_cols=77 Identities=27% Similarity=0.336 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..+.++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999999999999999999999988 56677789999999999999999999999999999999999873
No 22
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=125.43 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE----------EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM----------VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 158 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~----------i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l 158 (166)
.....++|||||||+++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4566899999999999999999999999999974 677888999999999999999999999999999999
Q ss_pred CCeeceeC
Q 031063 159 NKLSPKKK 166 (166)
Q Consensus 159 ~gr~i~~k 166 (166)
+|+.|+++
T Consensus 89 ~g~~l~V~ 96 (99)
T 2la6_A 89 SGNPIKVS 96 (99)
T ss_dssp SSSBCEEE
T ss_pred CCcEEEEE
Confidence 99999874
No 23
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=124.12 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4456789999999999999999999999999988 56677889999999999999999999999999999999999873
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=1.4e-20 Score=130.12 Aligned_cols=71 Identities=31% Similarity=0.484 Sum_probs=65.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..+|||||||+++++++|+++|++||.|.. |++|+ +.++|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 568999999999999999999999999988 56664 568999999999999999999999999999999987
No 25
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=2.3e-20 Score=122.44 Aligned_cols=77 Identities=30% Similarity=0.403 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++ +++..++|+.|+++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4456889999999999999999999999999988 67788899999999999999999999996 58899999999875
No 26
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=124.60 Aligned_cols=76 Identities=34% Similarity=0.587 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...++|||+|||.++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45789999999999999999999999999988 66777889999999999999999999999999999999999873
No 27
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=125.16 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 445789999999999999999999999999975 78888899999999999999999999999999999999999873
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=125.51 Aligned_cols=77 Identities=30% Similarity=0.440 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++ |||..++|+.|+|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456799999999999999999999999999988 66677899999999999999999999998 99999999999873
No 29
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=1.3e-20 Score=125.42 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 44689999999999999999999999999975 78888899999999999999999999999999999999999873
No 30
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=127.93 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556899999999999999999999999999988 56677889999999999999999999999999999999999873
No 31
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=124.23 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCcee-E--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCee---
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE-M--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS--- 162 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~-~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~--- 162 (166)
.....++|||+|||+++++++|+++|++||.|. . ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345689999999999999999999999999998 6 7788889999999999999999999999999999999999
Q ss_pred -cee
Q 031063 163 -PKK 165 (166)
Q Consensus 163 -i~~ 165 (166)
|++
T Consensus 85 ~l~v 88 (99)
T 2div_A 85 RFKL 88 (99)
T ss_dssp ECCE
T ss_pred eEEE
Confidence 765
No 32
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-21 Score=124.42 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.+.++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 45789999999999999999999999999988 67788899999999999999999999999999999999999763
No 33
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=3.2e-20 Score=126.93 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999988 55677899999999999999999999999999999999999873
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=125.98 Aligned_cols=78 Identities=33% Similarity=0.545 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++||.|.. ++.++.+++++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4556899999999999999999999999999988 56677889999999999999999999999999999999999873
No 35
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-20 Score=126.65 Aligned_cols=78 Identities=26% Similarity=0.314 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999987 56677889999999999999999999999999999999999873
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.5e-20 Score=124.12 Aligned_cols=77 Identities=21% Similarity=0.416 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|.. ++.++ +|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455789999999999999999999999999988 56666 89999999999999999999999999999999999873
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=124.46 Aligned_cols=76 Identities=29% Similarity=0.424 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCC---CCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKV---TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~---tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.+.++|||+|||+++++++|+++|++||.|.. +..++. +++++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45789999999999999999999999999988 566655 6699999999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 83 ~ 83 (98)
T 2cpf_A 83 R 83 (98)
T ss_dssp E
T ss_pred E
Confidence 3
No 38
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=127.63 Aligned_cols=78 Identities=28% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCcee--------E--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--------M--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 158 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~--------~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l 158 (166)
.....++|||+|||+++++++|+++|++||.|. . +++++.+|+++|||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445689999999999999999999999999997 3 677888999999999999999999999999999999
Q ss_pred CCeeceeC
Q 031063 159 NKLSPKKK 166 (166)
Q Consensus 159 ~gr~i~~k 166 (166)
+|+.|+|+
T Consensus 91 ~g~~l~V~ 98 (113)
T 2cpe_A 91 QGSKLKVS 98 (113)
T ss_dssp TTEECEEE
T ss_pred CCCEEEEE
Confidence 99999873
No 39
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=6.3e-20 Score=124.11 Aligned_cols=76 Identities=24% Similarity=0.496 Sum_probs=70.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++|| |.. +++++.+|+++|||||+|.+.++|++|+ .|||..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445679999999999999999999999997 766 7788889999999999999999999999 899999999999873
No 40
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=3.4e-20 Score=126.96 Aligned_cols=79 Identities=34% Similarity=0.606 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
......++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999988 6778889999999999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
.
T Consensus 101 ~ 101 (108)
T 2jrs_A 101 G 101 (108)
T ss_dssp E
T ss_pred E
Confidence 3
No 41
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=4.8e-20 Score=122.01 Aligned_cols=77 Identities=29% Similarity=0.368 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..+.++|||+|||+++++++|+++|++||.|..+.+...+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999843333589999999999999999999999999999999999863
No 42
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-20 Score=126.31 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhC------CcEeCC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN------GYVSNK 160 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~------g~~l~g 160 (166)
...+.++|||+|||+++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|| |..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4456889999999999999999999999999988 66788899999999999999999999999999 999999
Q ss_pred eeceeC
Q 031063 161 LSPKKK 166 (166)
Q Consensus 161 r~i~~k 166 (166)
+.|+++
T Consensus 91 ~~l~v~ 96 (111)
T 1x4h_A 91 RQLKVD 96 (111)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 999873
No 43
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=124.46 Aligned_cols=77 Identities=30% Similarity=0.453 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhc-cCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcE-eCCeece
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFET-AGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV-SNKLSPK 164 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~-~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~-l~gr~i~ 164 (166)
...+.++|||+|||+++++++|+++|++ ||.|.. ++.++ +|+++|||||+|.+.++|++|++.|||.. ++|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 999988 67777 99999999999999999999999999999 9999998
Q ss_pred eC
Q 031063 165 KK 166 (166)
Q Consensus 165 ~k 166 (166)
++
T Consensus 84 v~ 85 (104)
T 2dhg_A 84 LS 85 (104)
T ss_dssp CC
T ss_pred EE
Confidence 74
No 44
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=122.39 Aligned_cols=77 Identities=30% Similarity=0.386 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. +..++. |+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 3455789999999999999999999999999988 566664 9999999999999999999999999999999999873
No 45
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-20 Score=127.35 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||||||+++++++|+++|++||.|.. ++.|+. |+++|||||+|.+.++|.+|++ +||..++|+.|+++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 344689999999999999999999999999988 666776 9999999999999999999998 89999999999874
No 46
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=125.77 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCC------cHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe-
Q 031063 89 NFSPDLKLFVGNLPFSV------DSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL- 161 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~------t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr- 161 (166)
.....++|||||||+.+ ++++|+++|++||.|..+.+.+.+|+++|||||+|.+.++|.+|++.|||..++|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34457899999999999 78999999999999999555567899999999999999999999999999999998
Q ss_pred ecee
Q 031063 162 SPKK 165 (166)
Q Consensus 162 ~i~~ 165 (166)
.|+|
T Consensus 91 ~l~V 94 (105)
T 2nlw_A 91 TFRV 94 (105)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8876
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=125.32 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEec-CCCCCcccEEEEEEcCHHHHHHHHHHh-CCcEeCCeece
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYD-KVTGRSRGFGFVTMSSVEEVEAAAQQF-NGYVSNKLSPK 164 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~-~~tg~~~G~~FV~f~~~~~a~~Al~~l-~g~~l~gr~i~ 164 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.+ +.+|+++|||||+|.+.++|++|++.| ||..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4556899999999999999999999999999988 4455 568999999999999999999999999 99999999998
Q ss_pred eC
Q 031063 165 KK 166 (166)
Q Consensus 165 ~k 166 (166)
++
T Consensus 91 v~ 92 (107)
T 2cph_A 91 LE 92 (107)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 48
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=4.3e-20 Score=130.36 Aligned_cols=78 Identities=27% Similarity=0.414 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++||.|.. +++++.+|+.+|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999999999999999999999988 67788899999999999999999999999999999999999874
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=3.2e-20 Score=126.05 Aligned_cols=78 Identities=27% Similarity=0.410 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe---CCeec
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS---NKLSP 163 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l---~gr~i 163 (166)
.....++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..+ +|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 4456789999999999999999999999999988 566778899999999999999999999999999988 88998
Q ss_pred eeC
Q 031063 164 KKK 166 (166)
Q Consensus 164 ~~k 166 (166)
+|+
T Consensus 89 ~v~ 91 (106)
T 2dgp_A 89 QVK 91 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=8.8e-20 Score=123.63 Aligned_cols=77 Identities=31% Similarity=0.376 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC---eec
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK---LSP 163 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g---r~i 163 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++ +|+++|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3456899999999999999999999999999988 55666 79999999999999999999999999999998 988
Q ss_pred eeC
Q 031063 164 KKK 166 (166)
Q Consensus 164 ~~k 166 (166)
+|+
T Consensus 90 ~V~ 92 (105)
T 2dnh_A 90 VVK 92 (105)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 51
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=121.46 Aligned_cols=79 Identities=25% Similarity=0.372 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
......++|||+|||+++++++|+++|++||.|..+.+....+.++|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456689999999999999999999999999998843333334589999999999999999999999999999999873
No 52
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=132.16 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCcee----EEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc----EeCC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE----MVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY----VSNK 160 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~----~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~----~l~g 160 (166)
.....++|||||||+++++++|+++|++||.|. .|++|+.+|+++|||||+|.+. +|.+|++.|||. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 345678999999999999999999999999993 3788888999999999999999 999999999999 9999
Q ss_pred eeceeC
Q 031063 161 LSPKKK 166 (166)
Q Consensus 161 r~i~~k 166 (166)
|.|+|+
T Consensus 98 r~l~V~ 103 (131)
T 2m2b_A 98 KTINVE 103 (131)
T ss_dssp CCCCCE
T ss_pred EEEEEE
Confidence 999873
No 53
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=129.90 Aligned_cols=79 Identities=32% Similarity=0.448 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
......++|||+|||.++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556799999999999999999999999999988 6788889999999999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 117 ~ 117 (139)
T 1u6f_A 117 A 117 (139)
T ss_dssp E
T ss_pred E
Confidence 3
No 54
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=3.6e-20 Score=129.53 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4456789999999999999999999999999988 56677799999999999999999999999999999999999873
No 55
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=120.72 Aligned_cols=74 Identities=20% Similarity=0.404 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCC-cccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGR-SRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~-~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..++|||+|||.++++++|+++|++||.|.. +..++.++. ++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 4689999999999999999999999999988 566766665 8999999999999999999999999999999987
No 56
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=7.3e-20 Score=120.30 Aligned_cols=73 Identities=22% Similarity=0.461 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.++|||+|||+++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|++|+ .|||..++|+.|+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 579999999999999999999999999988 6778889999999999999999999999 899999999999873
No 57
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.3e-20 Score=122.73 Aligned_cols=76 Identities=26% Similarity=0.413 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE---EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM---VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~---i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.+.++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999999999999999999999965 56677899999999999999999999999999999999999873
No 58
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=1.6e-20 Score=119.84 Aligned_cols=71 Identities=35% Similarity=0.531 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 95 ~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
+|||+|||+++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|++|++ +||..++|+.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEE
Confidence 5899999999999999999999999988 56777789999999999999999999997 99999999999874
No 59
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=9.1e-20 Score=127.33 Aligned_cols=78 Identities=28% Similarity=0.406 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
......++|||+|||.++++++|+++|++||.|.. +..++ +|+++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 35567899999999999999999999999999988 56666 8999999999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 109 ~ 109 (124)
T 2kt5_A 109 Q 109 (124)
T ss_dssp E
T ss_pred E
Confidence 3
No 60
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=121.60 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|..+.+....+.++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 445689999999999999999999999999999843333344578999999999999999999999999999999873
No 61
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.8e-20 Score=123.58 Aligned_cols=76 Identities=32% Similarity=0.468 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++||.|.. +..+ +|+++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4457899999999999999999999999999988 4444 89999999999999999999999999999999999873
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=123.84 Aligned_cols=77 Identities=30% Similarity=0.378 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++. ||..|+|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 4556799999999999999999999999999988 677888999999999999999999999998 9999999999874
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.1e-20 Score=125.84 Aligned_cols=78 Identities=36% Similarity=0.560 Sum_probs=71.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
......++|||+|||+++++++|+++|++||.|.. ++.++.+++++|||||+|.+.++|++|++.+|+ .|+|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 34566899999999999999999999999999988 666778899999999999999999999999998 899999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 91 ~ 91 (116)
T 2cqd_A 91 N 91 (116)
T ss_dssp E
T ss_pred E
Confidence 3
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=123.42 Aligned_cols=77 Identities=32% Similarity=0.394 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++ +|+++|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 4456789999999999999999999999999988 56666 69999999999999999999999999999999999873
No 65
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.9e-20 Score=123.58 Aligned_cols=76 Identities=20% Similarity=0.396 Sum_probs=69.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCC-CCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVT-GRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~t-g~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...+.++|||+|||+++++++|+++|++|| |.. +++++.+ |+++|||||+|.+.++|++|+ .|||..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345579999999999999999999999999 877 5667777 999999999999999999999 89999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 89 ~ 89 (104)
T 1wi8_A 89 D 89 (104)
T ss_dssp E
T ss_pred E
Confidence 3
No 66
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=6.6e-20 Score=127.03 Aligned_cols=76 Identities=29% Similarity=0.457 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||.++++++|+++|++||.|.. +..++ +|+++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999999988 55666 89999999999999999999999999999999999873
No 67
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=6.8e-20 Score=120.67 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=64.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..-||||||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.|||..++||.|+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 56799999999999999999999999999954432 68999999999999999999999999999999985
No 68
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=124.46 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=68.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|..+.+....+.++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 455688999999999999999999999999998844333345689999999999999999999999999999999873
No 69
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=121.49 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLA----GLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 162 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~----~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~ 162 (166)
.....++|||+|||+++++++|+ ++|++||.|.. ++.++.+ +|||||+|.+.++|++|++.|||..++|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999988 4455544 899999999999999999999999999999
Q ss_pred ceeC
Q 031063 163 PKKK 166 (166)
Q Consensus 163 i~~k 166 (166)
|+|+
T Consensus 82 l~V~ 85 (96)
T 2dgx_A 82 ILVS 85 (96)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
No 70
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-20 Score=124.40 Aligned_cols=75 Identities=28% Similarity=0.543 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..++|||+|||+++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 4689999999999999999999999999988 67788899999999999999999999999999999999999873
No 71
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=121.95 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=68.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.| .++.+ .+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v-~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI-KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE-ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE-EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44568999999999999999999999999998 44445 689999999999999999999999999999999999873
No 72
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=2.7e-19 Score=129.60 Aligned_cols=78 Identities=27% Similarity=0.401 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|.. |+.++.+++++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456899999999999999999999999999988 67788899999999999999999999999999999999999873
No 73
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=128.01 Aligned_cols=78 Identities=26% Similarity=0.328 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456899999999999999999999999999988 56677899999999999999999999999999999999999874
No 74
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.5e-20 Score=125.90 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|+ .|||..|+|+.|+|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 4689999999999999999999999999988 6678888999999999999999999999 999999999999873
No 75
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=120.81 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|..+.+. .+++++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK-NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEC-CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999885543 356789999999999999999999999999999999873
No 76
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.5e-20 Score=128.22 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
....++|||+|||+++++++|+++|++||.|.. ++.+..+|+++|||||+|.+.++|++||+ |||..|+|+.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345789999999999999999999999999976 67777899999999999999999999999 9999999999987
No 77
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=1.2e-19 Score=124.35 Aligned_cols=77 Identities=31% Similarity=0.411 Sum_probs=66.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.+ |..++|+.|+++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3455789999999999999999999999999988 6677788999999999999999999999975 599999999863
No 78
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-20 Score=118.90 Aligned_cols=72 Identities=32% Similarity=0.467 Sum_probs=67.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
++|||+|||.++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|++|++.++ ..++|+.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEE
Confidence 47999999999999999999999999987 66777889999999999999999999999999 99999999874
No 79
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=117.35 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=68.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++| .|.. ++++ .+|+++|||||+|.+.++|++|++ |||..|+|+.|+++
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 7877 6667 789999999999999999999999 99999999999873
No 80
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=119.08 Aligned_cols=76 Identities=29% Similarity=0.345 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++ ++..++|+.|+++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 4456789999999999999999999999999988 67788899999999999999999999998 5889999999873
No 81
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.7e-19 Score=117.23 Aligned_cols=73 Identities=32% Similarity=0.324 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||+++++++|+++|++||.|..|++++.+|+ ||||+|.+.++|++|++ |||..|+|+.|+|+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 345689999999999999999999999999999988887776 99999999999999999 99999999999874
No 82
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=123.72 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCce-eE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i-~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...+.++|||+|||+++++++|+++|++||.| .. |++|+ +|+++|||||+|.+.++|++|++. ||..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 33 77787 899999999999999999999986 999999999987
No 83
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=123.72 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH---HHhhccCceeE--EEecCCCC---CcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLA---GLFETAGNVEM--VIYDKVTG---RSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~---~~F~~~G~i~~--i~~~~~tg---~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
.....++|||+|||+++++++|+ ++|++||.|.. ++.++.++ +++|||||+|.+.++|++|++.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 99999999988 45555443 566999999999999999999999999999
Q ss_pred eeceeC
Q 031063 161 LSPKKK 166 (166)
Q Consensus 161 r~i~~k 166 (166)
+.|+|+
T Consensus 91 r~l~V~ 96 (111)
T 2cpi_A 91 RTLKAS 96 (111)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999873
No 84
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=2.3e-20 Score=123.21 Aligned_cols=72 Identities=32% Similarity=0.495 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
++|||||||.++++++|+++|++||.|.. +..++.+|+++|||||+|.+.+ |.+|++.|||..++|+.|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEE
Confidence 58999999999999999999999999988 6677888999999999999999 999999999999999999873
No 85
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=125.85 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=68.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLA----GLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~----~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
...+.++||||||++.+++++|+ ++|++||.|..|.+.. +|+++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 34557899999999999999876 6999999998865543 789999999999999999999999999999999998
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
|
T Consensus 104 V 104 (127)
T 2a3j_A 104 I 104 (127)
T ss_dssp E
T ss_pred E
Confidence 7
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=2.6e-19 Score=124.82 Aligned_cols=74 Identities=20% Similarity=0.464 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..++|||+|||+++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|+ .|||..|+|+.|+|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 3689999999999999999999999999988 6778889999999999999999999999 799999999999873
No 87
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=119.60 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=69.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|+.|+.|. +++++.+++++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~-~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRAR-IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEE-EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEE-EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 455689999999999999999999999886443 67788899999999999999999999999999999999999873
No 88
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=2.7e-19 Score=123.28 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccC-ceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAG-NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G-~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||+++++++|+++|++|| .|..+.+. .++++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~--~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN--TRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS--SCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE--cCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999999999 88875443 23589999999999999999999999999999999873
No 89
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=2.3e-19 Score=129.94 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999988 56677799999999999999999999999999999999999873
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-20 Score=123.47 Aligned_cols=76 Identities=20% Similarity=0.388 Sum_probs=65.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecC-CCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDK-VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~-~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||||||+++++++|+++|++|| |.. ++.++ .+|+++|||||+|.+.++|++|+ .|||..++|+.|++
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345579999999999999999999999999 887 45565 58999999999999999999999 89999999999986
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 93 ~ 93 (100)
T 2j76_E 93 D 93 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 91
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=121.74 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-E--EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-V--IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i--~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||+|||+++++++|+++|++||.|.. + +++ .+|+++|||||+|.+.++|++|++. ||..|+||.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999976 3 455 7899999999999999999999997 999999999886
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.7e-19 Score=119.50 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=64.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN--GYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~--g~~l~gr~i~~k 166 (166)
...+.++|||||||+++++++|+++|++||.|..+.+-+ .||||||+|.+.++|++|++.|+ +..|+|+.|+|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~----~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345688999999999999999999999999999944333 27999999999999999999886 479999999874
No 93
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2.8e-19 Score=124.19 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCc---eeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGN---VEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~---i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
....++|||+|||+++++++|+++|+.||. |.. +++++. |+++|||||+|.+.++|++|++ +||..|+||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999998 555 667775 9999999999999999999998 999999999998
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
|
T Consensus 92 V 92 (118)
T 2db1_A 92 V 92 (118)
T ss_dssp E
T ss_pred E
Confidence 7
No 94
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-20 Score=125.04 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||+++++++|+++|++||.|.. ++++..+|+++|||||+|.+.++|++|++ |||..++|+.|+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 345789999999999999999999999999877 67777789999999999999999999998 99999999999873
No 95
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=121.18 Aligned_cols=72 Identities=33% Similarity=0.571 Sum_probs=65.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 161 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr 161 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++ +|.++|||||+|.+.++|++|++.|||..++|+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 3456789999999999999999999999999988 66777 899999999999999999999999999999543
No 96
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=122.22 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||+|||+++++++|+++|++||.+.. |++|+ +|+++|||||+|.+.++|++||+ +|+..|+||.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3455789999999999999999999999996633 67787 89999999999999999999995 7999999999987
No 97
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=122.23 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCc-eeE--EE-ecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CcEeCCeece
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGN-VEM--VI-YDKVTGRSRGFGFVTMSSVEEVEAAAQQFN--GYVSNKLSPK 164 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~-i~~--i~-~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~--g~~l~gr~i~ 164 (166)
.+.++|||+|||+++++++|+++|++||. |.. ++ .++.+|+++|||||+|.+.++|++|++.|| +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 888 33 567788999999999999999999999996 5899999998
Q ss_pred eC
Q 031063 165 KK 166 (166)
Q Consensus 165 ~k 166 (166)
++
T Consensus 86 V~ 87 (109)
T 2dis_A 86 VD 87 (109)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 98
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-19 Score=123.03 Aligned_cols=75 Identities=36% Similarity=0.501 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++. ||..|+|+.|+|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 34689999999999999999999999999988 677888999999999999999999999987 9999999999873
No 99
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=1.9e-19 Score=138.62 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccC--ceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAG--NVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G--~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..++|||+||++++++++|+++|++|| .|.. |++|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 577999999999999999999999999 8877 78888999999999999999999999999999999999999874
No 100
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-19 Score=124.51 Aligned_cols=78 Identities=26% Similarity=0.296 Sum_probs=68.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++||.|.. +.++..+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456799999999999999999999999999854 22333389999999999999999999999999999999999873
No 101
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=9.9e-19 Score=127.91 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999999999999999999999988 6778889999999999999999999999999999999999987
No 102
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=1.7e-19 Score=128.51 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=69.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCc---eeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGN---VEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~---i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
.....++|||+|||+++++++|+++|++||. |.. +++|+. |+++|||||+|.+.++|++|++ +||..|+||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 4456789999999999999999999999999 544 677876 9999999999999999999999 99999999999
Q ss_pred eeC
Q 031063 164 KKK 166 (166)
Q Consensus 164 ~~k 166 (166)
+|+
T Consensus 118 ~V~ 120 (136)
T 2hgl_A 118 EVF 120 (136)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 103
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=7.9e-20 Score=116.54 Aligned_cols=71 Identities=27% Similarity=0.335 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 95 KLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 95 ~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
+|||+|||.++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|++|++ ++|..++|+.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEE
Confidence 5899999999999999999999999988 56777889999999999999999999998 49999999999874
No 104
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-19 Score=119.43 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=68.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999998766 4578999999999999999999999999999999999873
No 105
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-18 Score=129.01 Aligned_cols=77 Identities=29% Similarity=0.410 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. |..++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4566799999999999999999999999999988 55566 89999999999999999999999999999999999873
No 106
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=1.5e-18 Score=131.48 Aligned_cols=76 Identities=29% Similarity=0.335 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..+.++|||||||+++++++|+++|++||.|.. |++|+.+|+++|||||+|.+.++|.+|++.+||..+.|+.|++
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 345789999999999999999999999999988 7788999999999999999999999999999999999999875
No 107
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4e-19 Score=124.61 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=66.2
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcC----HHH----HHHHHH--HhCCcE
Q 031063 94 LKLFVGNL----PFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSS----VEE----VEAAAQ--QFNGYV 157 (166)
Q Consensus 94 ~~lfVgnL----p~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~----~~~----a~~Al~--~l~g~~ 157 (166)
.+|||||| ++.+++++|+++|++||+|.+ +++|+.||+++|||||+|.+ +++ |.+|++ .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999988 89999999999999999996 433 788888 789999
Q ss_pred eCCeeceeC
Q 031063 158 SNKLSPKKK 166 (166)
Q Consensus 158 l~gr~i~~k 166 (166)
|+||.|+|+
T Consensus 83 I~Gr~irV~ 91 (136)
T 2j8a_A 83 IMGFKFEVI 91 (136)
T ss_dssp ETTEEEEEE
T ss_pred ecCcEEEEE
Confidence 999999984
No 108
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.1e-18 Score=116.03 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...++|||||||.++++++|+++|++||.|..+.+. +++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 446899999999999999999999999999885443 468999999999999999999999999999999874
No 109
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-19 Score=122.52 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCc---eeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGN---VEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~---i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
.....++|||+|||+++++++|+++|+.||. |.. +++++. |+++|||||+|.+.++|++|++ +||..++||.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4456899999999999999999999999998 655 566766 9999999999999999999999 99999999998
Q ss_pred ee
Q 031063 164 KK 165 (166)
Q Consensus 164 ~~ 165 (166)
++
T Consensus 85 ~V 86 (107)
T 2lmi_A 85 EV 86 (107)
T ss_dssp CC
T ss_pred EE
Confidence 86
No 110
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=6.2e-19 Score=117.70 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=67.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLA----GLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~----~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
...+.++|||+|||.++++++|+ ++|++||.|..+.+. .+|+++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC-HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE-cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 34567899999999999999999 999999999985443 3688899999999999999999999999999999998
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
+
T Consensus 83 v 83 (97)
T 1nu4_A 83 I 83 (97)
T ss_dssp E
T ss_pred E
Confidence 6
No 111
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=111.69 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=65.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh-CCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF-NGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l-~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|..+.+.+ ++|||||+|.+.++|++|++.| ||..++|+.|+++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345678999999999999999999999999998854433 4799999999999999999999 9999999999873
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=113.76 Aligned_cols=72 Identities=26% Similarity=0.407 Sum_probs=65.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34568999999999999999999999999999885443 6899999999999999999999999999999873
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=2.1e-19 Score=127.70 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3455789999999999999999999999999988 45677789999999999999999999999999999999999873
No 114
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.9e-19 Score=120.32 Aligned_cols=72 Identities=25% Similarity=0.342 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..++|||+|||+++++++|+++|++| .|.. |++|+. |+++|||||+|.+.++|++|+ .+||..|+||.|+|+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 35799999999999999999999999 6766 566764 999999999999999999999 699999999999873
No 115
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-18 Score=115.28 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh--CCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF--NGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l--~g~~l~gr~i~~ 165 (166)
...+.++|||+|||+++++++|+++|++||.|..+.+.+. +|||||+|.+.++|++|++.| ++..++|+.|++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999998544432 899999999999999999976 578899999986
No 116
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=115.89 Aligned_cols=75 Identities=27% Similarity=0.490 Sum_probs=67.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....+.++|||+|||.++++++|+++|++||.|..+.+.+ .+|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3556789999999999999999999999999998855443 37999999999999999999999999999999873
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=115.86 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=65.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. ++. ++++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3455789999999999999999999999999953 443 4678999999999999999999999999999999873
No 118
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=6.3e-19 Score=125.91 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=68.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEE-------EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-------IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 161 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i-------~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr 161 (166)
...+.++|||||||+++++++|+++|++||.|..+ +....+|+++|||||+|.+.++|.+|++.|||..++|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 45667999999999999999999999999998652 33345899999999999999999999999999999999
Q ss_pred ecee
Q 031063 162 SPKK 165 (166)
Q Consensus 162 ~i~~ 165 (166)
.|+|
T Consensus 121 ~l~V 124 (143)
T 3egn_A 121 PMVV 124 (143)
T ss_dssp ECEE
T ss_pred EEEE
Confidence 9987
No 119
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=116.09 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC-----eec
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK-----LSP 163 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g-----r~i 163 (166)
.....++|||+|||+++++++|+++|++||.|..+.+... |||||+|.+.++|++||+.|||..|+| +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 3456789999999999999999999999999988544332 899999999999999999999999999 888
Q ss_pred eeC
Q 031063 164 KKK 166 (166)
Q Consensus 164 ~~k 166 (166)
+|+
T Consensus 86 ~V~ 88 (108)
T 1x4c_A 86 RVK 88 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 120
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=116.01 Aligned_cols=74 Identities=12% Similarity=0.028 Sum_probs=64.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcE--eCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV--SNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~--l~gr~i~~ 165 (166)
....+.++|||+|||+++++++|+++|++||.|..+.+-+ .||||||+|.+.++|.+|++.|+|.. ++||+|++
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 3456789999999999999999999999999999854432 47999999999999999999999875 88999986
No 121
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=4.8e-18 Score=113.97 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=64.8
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~-~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...+.++|||||||+ ++++++|+++|++||.|..+.+ .+|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445689999999998 9999999999999999998655 2799999999999999999999999999999987
No 122
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=121.77 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCce----eE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV----EM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i----~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
...++|||+|||+++++++|+++|++||.| .. |++| .+|+++|||||+|.+.++|++|++. |+..|+||.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999986 23 5666 5899999999999999999999986 99999999987
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
|
T Consensus 99 V 99 (123)
T 2dha_A 99 L 99 (123)
T ss_dssp C
T ss_pred E
Confidence 6
No 123
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=117.27 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--cEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG--YVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~-~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g--~~l~gr~i~~ 165 (166)
...+.++|||+|||+ ++++++|+++|++||.|..+.+-+ .+|||||+|.+.++|++|++.||+ ..|+||.|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 445789999999999 999999999999999999954432 258999999999999999999886 4699999987
No 124
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=3.5e-18 Score=116.91 Aligned_cols=71 Identities=23% Similarity=0.362 Sum_probs=64.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||||||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44567999999999999999999999999999884433 789999999999999999999999999999987
No 125
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=112.13 Aligned_cols=72 Identities=28% Similarity=0.362 Sum_probs=65.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44568899999999999999999999999999885544 4599999999999999999999999999999873
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=4.9e-18 Score=116.83 Aligned_cols=75 Identities=16% Similarity=0.351 Sum_probs=66.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
....++|||+|||+++++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN-TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC-STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34578999999999999999999999999998843332 3566999999999999999999999999999999986
No 127
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=115.65 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=65.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||.++++++|+++|++||.|..+.+... +|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345789999999999999999999999999988544432 7999999999999999999999999999999873
No 128
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=113.60 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=65.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC--CeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN--KLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~--gr~i~~k 166 (166)
..+.++|||+|||.++++++|+++|++||.|..+.+... +|||||+|.+.++|++|++.|||..++ |+.|++.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 445789999999999999999999999999998655432 789999999999999999999999999 9999873
No 129
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=7.9e-19 Score=118.37 Aligned_cols=71 Identities=25% Similarity=0.440 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..++|||+|||+++++++|+++|++||.|.. ++.++ +|+++|||||+|.+.++|++|++ +|..++|+.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 4689999999999999999999999999988 67777 99999999999999999999998 899999998874
No 130
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=115.81 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc--EeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY--VSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~--~l~gr~i~~ 165 (166)
...+.++|||+|||+++++++|+++|++||.|..+.+.+ .||||||+|.+.++|.+|++.|++. .++|+.|++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345678999999999999999999999999999955443 2799999999999999999988764 599999986
No 131
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=111.54 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=65.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 44568999999999999999999999999999885544 4499999999999999999999999999999873
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7.9e-20 Score=126.25 Aligned_cols=77 Identities=23% Similarity=0.274 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE----------EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM----------VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~----------i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~ 159 (166)
..+.++|||+|||.++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|++|++.|||..++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999964 5677788999999999999999999999999999999
Q ss_pred CeeceeC
Q 031063 160 KLSPKKK 166 (166)
Q Consensus 160 gr~i~~k 166 (166)
|+.|+|+
T Consensus 84 g~~l~V~ 90 (116)
T 2lcw_A 84 GNPIKVS 90 (116)
Confidence 9999874
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=7.9e-18 Score=121.40 Aligned_cols=73 Identities=30% Similarity=0.520 Sum_probs=69.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE
Confidence 579999999999999999999999999988 6778889999999999999999999999999999999999876
No 134
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=113.89 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=63.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCc-eeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC-cEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGN-VEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG-YVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~-i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g-~~l~gr~i~~k 166 (166)
....++|||+|||+++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||| ..++|+.|+++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 345789999999999999999999999999 544322 2579999999999999999999999 99999999873
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=6.2e-18 Score=115.60 Aligned_cols=71 Identities=25% Similarity=0.344 Sum_probs=64.9
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~-~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||++ +++++|+++|++||.|..+.+ ++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344689999999999 999999999999999998655 57999999999999999999999999999999873
No 136
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=111.81 Aligned_cols=73 Identities=27% Similarity=0.326 Sum_probs=65.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcc--CceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETA--GNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 88 ~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~--G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
......++|||+|||+++++++|+++|++| |.|..+.+. +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345668999999999999999999999999 888875433 679999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 84 ~ 84 (99)
T 2cpd_A 84 T 84 (99)
T ss_dssp E
T ss_pred E
Confidence 3
No 137
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.3e-17 Score=120.14 Aligned_cols=78 Identities=29% Similarity=0.482 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||.++++++|+++|++||.|.. +..++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+++
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 4456789999999999999999999999999988 67788899999999999999999999999999999999999873
No 138
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=8.3e-18 Score=113.68 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=65.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999885543 5699999999999999999999999999999873
No 139
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=118.19 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--cEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG--YVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g--~~l~gr~i~~ 165 (166)
...+.++|||+|||+++++++|+++|++||.|..+.+-+ .+|||||+|.+.++|++|++.|++ ..|+|+.|+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG----GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345678999999999999999999999999998843322 279999999999999999998874 6899999987
No 140
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=2e-18 Score=121.49 Aligned_cols=76 Identities=20% Similarity=0.140 Sum_probs=65.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCcee-E--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE-M--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~-~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||+|||+++++++|+++|++|+.+. . |++|+. |+++|||||+|.+.++|++|++ +++..|+||.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 345678999999999999999999999995442 4 566766 9999999999999999999998 5889999999986
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 116 ~ 116 (126)
T 2hgm_A 116 F 116 (126)
T ss_dssp E
T ss_pred E
Confidence 3
No 141
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=119.05 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=57.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCC---CCcccEEEEEEcCHHHHHHHHHHh
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVT---GRSRGFGFVTMSSVEEVEAAAQQF 153 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~t---g~~~G~~FV~f~~~~~a~~Al~~l 153 (166)
....++|||||||+++++++|+++|++||.|.. +++++.+ |+++|||||+|.+.++|++|++.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 345789999999999999999999999999985 4556555 799999999999999999999998
No 142
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.5e-18 Score=113.65 Aligned_cols=71 Identities=24% Similarity=0.419 Sum_probs=63.5
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~-~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...+.++|||+|||+ ++++++|+++|++||.|..+.+ .+|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 446689999999998 9999999999999999998554 2789999999999999999999999999999876
No 143
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=4.4e-18 Score=111.96 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=63.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..++|||+|||+++++++|+++|++| .|..+.++ +++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 72 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV 72 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 46899999999999999999999999 88775554 67999999999999999999999999999999987
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=7.1e-18 Score=122.04 Aligned_cols=74 Identities=27% Similarity=0.426 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+.++|||+|||.++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 4689999999999999999999999999988 5667789999999999999999999999999999999999876
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.7e-18 Score=115.99 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..++|||+|||+++++++|+++|++||.|..+.+.+ .+|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 367999999999999999999999999998865543 6789999999999999999999999999999986
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=110.34 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=64.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|| ++++++|+++|++||.|..+.+. +++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4456789999996 89999999999999999886553 578999999999999999999999999999999873
No 147
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=1.5e-17 Score=120.87 Aligned_cols=76 Identities=24% Similarity=0.413 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...++|||+|||.++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44789999999999999999999999999988 67777799999999999999999999999999999999999874
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.3e-17 Score=123.58 Aligned_cols=77 Identities=38% Similarity=0.484 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||+|||+++++++|+++|++||.|.. ++.++.+|+++|||||+|.+.++|.+|++. +|..++|+.|+++
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 3456789999999999999999999999999988 677888999999999999999999999975 9999999998763
No 149
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=114.79 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=63.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
++|||+|||.++++++|+++|++||.|..+.+... ++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEE
Confidence 48999999999999999999999999988444332 78999999999999999999999999999999873
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=9.7e-19 Score=125.06 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||+|||+++++++|+++|++|| |.. |++|+. |+++|||||+|.+.++|++|| .+|+..|+||.|+|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 345678999999999999999999999999 445 566765 999999999999999999999 78999999999876
No 151
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=1.8e-17 Score=108.32 Aligned_cols=71 Identities=28% Similarity=0.558 Sum_probs=63.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcc----C-------ceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETA----G-------NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~----G-------~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~ 159 (166)
...++|||+|||+++++++|+++|++| | .|..+.+.. .+|||||+|.+.++|++|+ .|||..++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 347899999999999999999999999 8 787754443 3799999999999999999 99999999
Q ss_pred CeeceeC
Q 031063 160 KLSPKKK 166 (166)
Q Consensus 160 gr~i~~k 166 (166)
|+.|+++
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999873
No 152
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=114.37 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=63.2
Q ss_pred CCCCcEEEE--cCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe-----CCee
Q 031063 90 FSPDLKLFV--GNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS-----NKLS 162 (166)
Q Consensus 90 ~~~~~~lfV--gnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l-----~gr~ 162 (166)
..+.++||| |||++++++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||.++ .|++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 345788999 88999999999999999999998865543 379999999999999999999999998 6777
Q ss_pred cee
Q 031063 163 PKK 165 (166)
Q Consensus 163 i~~ 165 (166)
|.+
T Consensus 98 l~v 100 (114)
T 2cq2_A 98 LYL 100 (114)
T ss_dssp CEE
T ss_pred EEE
Confidence 754
No 153
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=1.6e-17 Score=138.64 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.+.++|||+||++++++++|+++|++||.|.. |+.++.+|+++|||||+|.+.++|.+||+.|||..|+|+.|+|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45689999999999999999999999999988 67788899999999999999999999999999999999999874
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.5e-17 Score=119.57 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.....++|||||||+++++++|+++|++||.|..+.+... ++|||||+|.+.++|.+|++.|||..++|+.|+++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4466799999999999999999999999999988544332 68999999999999999999999999999999873
No 155
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=115.29 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN--GYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~-~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~--g~~l~gr~i~~ 165 (166)
..+.++|||+|||++ +++++|+++|++||.|..+.+. +.+|||||+|.+.++|++|++.|| +..|+||.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456889999999998 9999999999999999985443 247999999999999999999885 45699999986
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=9.5e-18 Score=115.87 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
...++|||+|||+++++++|+++|++||.|..+.+... |||||+|.+.++|++||+.|||..|+|+.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 44789999999999999999999999999988544432 899999999999999999999999999984
No 157
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=3.1e-17 Score=123.29 Aligned_cols=75 Identities=16% Similarity=0.360 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...++|||+|||.++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V 199 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 199 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEE
Confidence 35689999999999999999999999999988 6778889999999999999999999999999999999999986
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=110.82 Aligned_cols=74 Identities=26% Similarity=0.232 Sum_probs=64.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEE---EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV---IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i---~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||+|||+++++++|+++|++||.|..+ +.++.+ |.|||+|.+.++|++|++.|||..++|+.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34557899999999999999999999999999885 334333 34999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 87 ~ 87 (96)
T 2e44_A 87 A 87 (96)
T ss_dssp E
T ss_pred E
Confidence 3
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=4.3e-17 Score=120.99 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||.++++++|+++|++||.|.. +..++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 356799999999999999999999999999988 67777799999999999999999999999999999999999873
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=3e-17 Score=124.29 Aligned_cols=73 Identities=30% Similarity=0.444 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...+|||+||++++++++|+++|++||.|.. |++|. +.++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4578999999999999999999999999988 55563 5689999999999999999999999999999999873
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=3.1e-17 Score=123.30 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=66.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..++|||+|||.++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3679999999999999999999999999988 5667778999999999999999999999999999999999876
No 162
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=9.4e-17 Score=116.07 Aligned_cols=77 Identities=30% Similarity=0.489 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC--eecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK--LSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g--r~i~~ 165 (166)
....++|||+|||.++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|.+|++.|||..++| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 456789999999999999999999999999988 67777789999999999999999999999999999988 88877
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 166 ~ 166 (168)
T 1b7f_A 166 R 166 (168)
T ss_dssp E
T ss_pred E
Confidence 4
No 163
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=107.53 Aligned_cols=67 Identities=22% Similarity=0.194 Sum_probs=59.5
Q ss_pred CCCcE-EEEcCCCCCCcHHH----HHHHhhcc-CceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 91 SPDLK-LFVGNLPFSVDSAQ----LAGLFETA-GNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 91 ~~~~~-lfVgnLp~~~t~~~----l~~~F~~~-G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.+..+ |||+|||+.+++++ |+++|++| |.|..| +| |+|||.|.+.++|++|++.|||..+.||+|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 34555 99999999999988 55899999 499876 34 9999999999999999999999999999998
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
+
T Consensus 78 v 78 (96)
T 2diu_A 78 V 78 (96)
T ss_dssp E
T ss_pred E
Confidence 6
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1e-16 Score=118.71 Aligned_cols=75 Identities=27% Similarity=0.446 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
...++|||+|||+++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 34589999999999999999999999999988 677888999999999999999999999986 8999999999873
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.6e-17 Score=115.79 Aligned_cols=71 Identities=24% Similarity=0.379 Sum_probs=64.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
++|||+|||.++++++|+++|++||.|.. ++.++ +|+++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEE
Confidence 58999999999999999999999999988 44554 5889999999999999999999999999999999876
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=1.1e-16 Score=115.30 Aligned_cols=73 Identities=32% Similarity=0.521 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
...++|||+|||.++++++|+++|++||.|.. +..+..+|.++|||||+|.+.++|.+|++.|||..++|+.+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCcc
Confidence 45688999999999999999999999999988 67777799999999999999999999999999999999863
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=5.8e-17 Score=117.21 Aligned_cols=72 Identities=26% Similarity=0.484 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+.++|||+|||+++++++|+++|++||.|.. +++++.+|+++|||||+|.+.++|.+|++ ++..++|+.|++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccc
Confidence 4689999999999999999999999999988 56677899999999999999999999998 467899998865
No 168
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=1.6e-16 Score=124.53 Aligned_cols=76 Identities=17% Similarity=0.357 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLA----GLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~----~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
+..+.++|||+|||+++++++|+ ++|++||.|..|.+.+ +|+++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 45668999999999999999977 8999999999865554 789999999999999999999999999999999998
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
+
T Consensus 84 v 84 (282)
T 3pgw_A 84 I 84 (282)
T ss_pred E
Confidence 6
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1.2e-16 Score=116.03 Aligned_cols=68 Identities=28% Similarity=0.414 Sum_probs=62.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCC--CcccEEEEEEcCHHHHHHHHHHhCCcEeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg--~~~G~~FV~f~~~~~a~~Al~~l~g~~l~ 159 (166)
+.++|||+|||+++++++|+++|++||.|.. ++.++.+| +++|||||+|.+.++|++|++.|||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 4689999999999999999999999999988 67787776 89999999999999999999999998765
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=2.6e-17 Score=119.05 Aligned_cols=74 Identities=31% Similarity=0.413 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
..++|||+|||.++++++|+++|++||.|.. +..++.+|+++|||||+|.+.++|.+|++ ++|..++|+.|+++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 3678999999999999999999999999988 55677789999999999999999999998 89999999999874
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2e-16 Score=119.63 Aligned_cols=71 Identities=23% Similarity=0.200 Sum_probs=64.0
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLP-FSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp-~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+.++|||+||+ +.+++++|+++|++||.|..+.+-+. .+|||||+|.+.++|++|++.|||..+.|+.|++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 47899999999 89999999999999999998544321 4799999999999999999999999999999986
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=1.3e-16 Score=116.57 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=63.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC--eecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK--LSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g--r~i~~ 165 (166)
.....+|||+||++.+++++|+++|++||.|..|.+.. +..+|||||+|.+.++|++|++.|||..|.| +.|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~--k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE--SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 34457799999999999999999999999999944321 2357999999999999999999999999965 88876
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.4e-16 Score=116.29 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
....++|||+|||.++++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..++|+.|+++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3467899999999999999999999999999766 6689999999999999999999999999999999999873
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=3e-16 Score=117.72 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=64.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.++|||+|||+++++++|+++|++||.|.. +.++. +|+++|||||+|.+.++|++|++.+ +..++|+.|+|+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~ 182 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLIL 182 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEE
Confidence 589999999999999999999999999988 45554 5999999999999999999999865 569999999874
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=1.8e-16 Score=110.53 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=63.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||||+ ++++++|+++|++||.|..+.+. +++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999996 79999999999999999885543 57899999999999999999999999999999987
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=2.9e-16 Score=110.81 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=62.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCcEeCC--eecee
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGF-GFVTMSSVEEVEAAAQQFNGYVSNK--LSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~-~FV~f~~~~~a~~Al~~l~g~~l~g--r~i~~ 165 (166)
...-.+|||+||++.+++++|+++|++||.|..|.+.. +.+|| |||+|.+.++|++|++.|||..|.| +.|++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~---~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT---KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE---ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc---CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34567789999999999999999999999999943322 13677 9999999999999999999999988 66664
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=3.8e-16 Score=109.47 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=58.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCcEeCC--eecee
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGF-GFVTMSSVEEVEAAAQQFNGYVSNK--LSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~-~FV~f~~~~~a~~Al~~l~g~~l~g--r~i~~ 165 (166)
...|||+||++.+++++|+++|++||.|..|.+... .|| |||+|.+.++|.+|++.|||..|.| +.|++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 455789999999999999999999999998433222 286 9999999999999999999999987 46665
No 178
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=4.1e-16 Score=102.99 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=55.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcE--eCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV--SNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~--l~gr~i~~ 165 (166)
......+|||||||+++++++|+++|++||.|..+.+-. .++|||||+|.+.++|++ ++|.. ++|+.|++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345688999999999999999999999999999854433 278999999999999883 45554 56888875
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=3.4e-16 Score=113.69 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC---Ceecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN---KLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~---gr~i~~ 165 (166)
...++|||+|||.++++++|+++|++||.|.. +..+. +|+++|||||+|.+.++|.+|++.|||..+. |++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 45789999999999999999999999999988 45554 6999999999999999999999999998766 488887
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 172 ~ 172 (175)
T 3nmr_A 172 K 172 (175)
T ss_dssp E
T ss_pred E
Confidence 4
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=1.1e-15 Score=104.20 Aligned_cols=75 Identities=16% Similarity=0.046 Sum_probs=64.3
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHhhccCceeE--EEecCC-CCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCee
Q 031063 91 SPDLKLFVGNLPF-----SVDSAQLAGLFETAGNVEM--VIYDKV-TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 162 (166)
Q Consensus 91 ~~~~~lfVgnLp~-----~~t~~~l~~~F~~~G~i~~--i~~~~~-tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~ 162 (166)
.+.+.|+|.||-. +-.+++|+++|++||.|.. |..++. +++++|||||+|.+.++|.+|++.|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578899999952 2368999999999999998 555654 3689999999999999999999999999999999
Q ss_pred cee
Q 031063 163 PKK 165 (166)
Q Consensus 163 i~~ 165 (166)
|++
T Consensus 86 i~v 88 (105)
T 2pe8_A 86 VKA 88 (105)
T ss_dssp CEE
T ss_pred EEE
Confidence 986
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=3.7e-17 Score=119.33 Aligned_cols=76 Identities=26% Similarity=0.321 Sum_probs=69.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||+|||+++++++|+++|.+||.+.. ++++..+|+++|||||+|.+.++|.+|++ |||..++|+.|++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 4566899999999999999999999999998866 56666789999999999999999999995 9999999999986
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=5.2e-16 Score=117.38 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCce--eEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 162 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i--~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~ 162 (166)
.+.++|||+|||+++++++|+++|++||.| ..+.+....|+.+|||||+|.+.++|.+|+..|||+.|+|+.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 457899999999999999999999999998 665443334666799999999999999999999999999984
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=1.6e-15 Score=118.92 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...++|||+|||+++++++|+++|++||.|.. ++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 169 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 169 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 35689999999999999999999999999988 6778889999999999999999999999999999999999976
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-16 Score=102.10 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...++|||+|||+++++++|+++|++||.|..+.+.. .++|||||+|.+.++|++|+. .+..++|+.|++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK---PFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS---SCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec---CCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEE
Confidence 3578999999999999999999999999998854432 278999999999999986533 234568988876
No 185
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=1.4e-16 Score=118.17 Aligned_cols=73 Identities=23% Similarity=0.440 Sum_probs=60.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeE-------EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-------VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-------i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
..++|||+|||+++++++|+++|++||.|.. .+.+...++++|||||+|.+.++|++|+ .|||..++|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 4689999999999999999999999953322 1222234667999999999999999999 8999999999997
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
+
T Consensus 82 v 82 (198)
T 2yh0_A 82 I 82 (198)
T ss_dssp E
T ss_pred E
Confidence 6
No 186
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=1.9e-16 Score=115.06 Aligned_cols=69 Identities=29% Similarity=0.551 Sum_probs=60.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcc----C-------ceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETA----G-------NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~----G-------~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
+.++|||+|||+++++++|+++|++| | .|..+. .++++|||||+|.+.++|.+|+ .+||..++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~----~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ----INQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE----EETTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE----ecCCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 46899999999999999999999999 5 444332 3456899999999999999999 899999999
Q ss_pred eecee
Q 031063 161 LSPKK 165 (166)
Q Consensus 161 r~i~~ 165 (166)
+.|++
T Consensus 78 ~~i~v 82 (172)
T 2g4b_A 78 QSLKI 82 (172)
T ss_dssp EECEE
T ss_pred ceeee
Confidence 99876
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=1.3e-15 Score=117.75 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe--
Q 031063 90 FSPDLKLFVGNLPFSV---------DSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS-- 158 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~---------t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l-- 158 (166)
....++||||||+..+ ++++|+++|++||.|+.|.+-. ++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 4568999999999998 7999999999999999943332 589999999999999999999999999
Q ss_pred ----------CCeeceeC
Q 031063 159 ----------NKLSPKKK 166 (166)
Q Consensus 159 ----------~gr~i~~k 166 (166)
+|+.|.|+
T Consensus 207 ~~~~e~~~~~~gr~L~V~ 224 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVK 224 (240)
T ss_dssp TTSTTGGGGGGSCCCEEE
T ss_pred cccccccccCCCCEEEEE
Confidence 89999874
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=2.4e-15 Score=117.16 Aligned_cols=73 Identities=30% Similarity=0.564 Sum_probs=66.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||||||+++++++|+++|++||.|..+.+. +++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 45667899999999999999999999999999985553 34799999999999999999999999999999986
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=3.3e-15 Score=117.07 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCC-cHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 89 NFSPDLKLFVGNLPFSV-DSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~-t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.....++|||+|||.++ ++++|+++|+.||.|.. +..+. +|+++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 33567899999999995 99999999999999988 45554 7999999999999999999999999999999999987
Q ss_pred C
Q 031063 166 K 166 (166)
Q Consensus 166 k 166 (166)
+
T Consensus 259 ~ 259 (284)
T 3smz_A 259 S 259 (284)
T ss_dssp E
T ss_pred E
Confidence 3
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=2.6e-15 Score=114.77 Aligned_cols=73 Identities=22% Similarity=0.158 Sum_probs=65.0
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 90 FSPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 90 ~~~~~~lfVgnLp~-~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
..+.++|||+|||+ ++++++|+++|++||.|..+.+.... +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45678999999999 99999999999999999885443321 789999999999999999999999999999986
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=99.41 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=63.5
Q ss_pred CCCCCcEEEEcCCCCCCc-----------HHHHHHHhhccCceeEE-EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 89 NFSPDLKLFVGNLPFSVD-----------SAQLAGLFETAGNVEMV-IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t-----------~~~l~~~F~~~G~i~~i-~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
...+.++|+|.||-.... +++|+++|++||.|..+ +.++ .++|||||+|.+.++|++|++.|||.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 445688999999944433 58999999999999984 4443 37999999999999999999999999
Q ss_pred EeCCeeceeC
Q 031063 157 VSNKLSPKKK 166 (166)
Q Consensus 157 ~l~gr~i~~k 166 (166)
.++||.|++.
T Consensus 88 ~~~gr~l~v~ 97 (112)
T 2dit_A 88 WFGGRQITAQ 97 (112)
T ss_dssp EETTEECEEE
T ss_pred EECCcEEEEE
Confidence 9999999863
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=3e-15 Score=117.77 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=66.5
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHhhccCceeE--EEecCC-CCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 89 NFSPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEM--VIYDKV-TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~-~t~~~l~~~F~~~G~i~~--i~~~~~-tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.....++|||+|||.+ +++++|+++|++||.|.. +..+.. ||.++|||||+|.+.++|.+|+ .|||..|+|+.|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 999999999999999988 344444 5999999999999999999999 9999999999998
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
+
T Consensus 285 V 285 (292)
T 2ghp_A 285 V 285 (292)
T ss_dssp E
T ss_pred E
Confidence 6
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=9.4e-15 Score=114.37 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=65.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC-Ceecee
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 165 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~-gr~i~~ 165 (166)
.....++|||+|||.++++++|+++|++||.|..+.+.+. .+|||||+|.+.++|.+|++.|||..++ |+.|++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG---RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC---CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 4456789999999999999999999999999998443321 1589999999999999999999999999 999986
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=4.9e-15 Score=110.26 Aligned_cols=70 Identities=23% Similarity=0.192 Sum_probs=63.1
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 93 DLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 93 ~~~lfVgnLp~-~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
.++|||+|||+ ++++++|+++|++||.|..+.+... .+|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 73 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN---KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 73 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT---CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEE
Confidence 57999999999 9999999999999999988544332 1789999999999999999999999999999986
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=1.1e-14 Score=114.48 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=62.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 87 ~~~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.......++|||+|||+++++++|+++|+.||.|.. ++.+. +.++|||||+|.+.++|.+|++ +||..++|+.|+
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL--KKNFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT--TSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 334567899999999999999999999999999988 44454 2358999999999999999995 999999999987
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
+
T Consensus 112 v 112 (292)
T 2ghp_A 112 V 112 (292)
T ss_dssp E
T ss_pred E
Confidence 6
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=3e-15 Score=101.68 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=57.9
Q ss_pred EcCCCCCCcHHHHHHHh------------hccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeec
Q 031063 98 VGNLPFSVDSAQLAGLF------------ETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 163 (166)
Q Consensus 98 VgnLp~~~t~~~l~~~F------------~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i 163 (166)
++||++.+++++|+++| ++||.|.. |..+. +|+++|||||+|.+.++|.+|++.|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888777666 99999999 33343 58899999999999999999999999999999999
Q ss_pred ee
Q 031063 164 KK 165 (166)
Q Consensus 164 ~~ 165 (166)
++
T Consensus 99 ~v 100 (104)
T 1jmt_A 99 HA 100 (104)
T ss_dssp CE
T ss_pred EE
Confidence 86
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.6e-14 Score=112.46 Aligned_cols=74 Identities=27% Similarity=0.296 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeE--EEecCCCCCcccEEEEEEcCHHHHHHHHHHh-CCcEeC---Ceece
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF-NGYVSN---KLSPK 164 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~--i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l-~g~~l~---gr~i~ 164 (166)
....+|||+|||..+++++|+++|++||.|.. ++.| .+|+++|||||+|.+.++|.+|++.| +|..+. |++|+
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 34689999999999999999999999999988 5667 58999999999999999999999999 555555 88887
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
+
T Consensus 173 v 173 (261)
T 3sde_A 173 V 173 (261)
T ss_dssp E
T ss_pred E
Confidence 5
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=2.6e-14 Score=106.27 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccC-ceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC-Ceecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAG-NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G-~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~-gr~i~~ 165 (166)
.+.++|||+|||.++++++|+++|++|| .|..+.+.+. .+|||||+|.+.++|.+|++.|||..++ |+.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 4589999999999999999999999999 9988554332 3799999999999999999999999999 999876
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=3.9e-14 Score=96.38 Aligned_cols=75 Identities=19% Similarity=0.089 Sum_probs=61.5
Q ss_pred CCCcEEEEcCC--CCCCc--------HHHHHHHhhccCceeEE--EecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 91 SPDLKLFVGNL--PFSVD--------SAQLAGLFETAGNVEMV--IYDKVT--GRSRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 91 ~~~~~lfVgnL--p~~~t--------~~~l~~~F~~~G~i~~i--~~~~~t--g~~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
.+.+.|.+.|+ +.+.. +++|++.|++||.|..+ .+++.+ ++++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678888887 33332 36899999999999994 444433 468999999999999999999999999
Q ss_pred EeCCeecee
Q 031063 157 VSNKLSPKK 165 (166)
Q Consensus 157 ~l~gr~i~~ 165 (166)
.++||.|++
T Consensus 83 ~f~GR~i~v 91 (105)
T 3v4m_A 83 KFANRVVVT 91 (105)
T ss_dssp EETTEECEE
T ss_pred EeCCCEEEE
Confidence 999999986
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=5.6e-14 Score=107.31 Aligned_cols=72 Identities=25% Similarity=0.341 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccC-ceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC-Ceecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAG-NVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G-~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~-gr~i~~ 165 (166)
.+.++|||+|||.++++++|+++|++|| .|..+.+.+ ..+|||||+|.+.++|.+|++.|||..++ |+.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ---KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS---SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE---CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 4579999999999999999999999999 998855432 13789999999999999999999999999 999986
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.51 E-value=3.8e-14 Score=114.81 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=59.5
Q ss_pred CCCCCcEEEEcC--CCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEe
Q 031063 89 NFSPDLKLFVGN--LPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 158 (166)
Q Consensus 89 ~~~~~~~lfVgn--Lp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l 158 (166)
...+..+||||| |++.+++++|+++|++||.|..|.+.+ +||||||+|.+.++|++|++.|||.++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 346688999999 589999999999999999999876654 479999999999999999999999988
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=9e-14 Score=96.52 Aligned_cols=74 Identities=16% Similarity=0.046 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCC--C---CcHHHHHHHhhccCceeE--EEecCC----CCCcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 92 PDLKLFVGNLPF--S---VDSAQLAGLFETAGNVEM--VIYDKV----TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 92 ~~~~lfVgnLp~--~---~t~~~l~~~F~~~G~i~~--i~~~~~----tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
+.+.|++.|+-. + --+++|++.|++||.|.. |..++. +++++||+||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578899999832 2 236899999999999998 555543 46788999999999999999999999999999
Q ss_pred eecee
Q 031063 161 LSPKK 165 (166)
Q Consensus 161 r~i~~ 165 (166)
|.|++
T Consensus 99 R~i~v 103 (118)
T 3ue2_A 99 RKVVA 103 (118)
T ss_dssp EECEE
T ss_pred cEEEE
Confidence 99986
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1e-12 Score=90.57 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=57.9
Q ss_pred CCcEEEEcCCCC--C--------CcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe
Q 031063 92 PDLKLFVGNLPF--S--------VDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 161 (166)
Q Consensus 92 ~~~~lfVgnLp~--~--------~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr 161 (166)
+.+.|.+.|+=. + --+++|++.|++||.|..+.+++.+ .+|||||+|.+.++|.+|++.|||..++||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 355666666621 1 1136899999999999996666543 589999999999999999999999999999
Q ss_pred ecee
Q 031063 162 SPKK 165 (166)
Q Consensus 162 ~i~~ 165 (166)
.|++
T Consensus 84 ~i~v 87 (114)
T 3s6e_A 84 MITA 87 (114)
T ss_dssp ECEE
T ss_pred EEEE
Confidence 9986
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=88.16 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeeceeC
Q 031063 103 FSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 166 (166)
Q Consensus 103 ~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~k 166 (166)
.++++++|+++|++||.|..+.+. ++++|||||+|.+.++|+.|++.+++ +.|++|+|+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~ 85 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKIS 85 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEE
Confidence 578999999999999999985443 47899999999999999999997555 678888763
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=4.2e-11 Score=83.17 Aligned_cols=76 Identities=12% Similarity=0.023 Sum_probs=62.7
Q ss_pred CCCCCCCCcEEEEcCCCCC-CcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcC-HHHHHHHHHHhC--CcEeCCe
Q 031063 86 DGSNFSPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSS-VEEVEAAAQQFN--GYVSNKL 161 (166)
Q Consensus 86 ~~~~~~~~~~lfVgnLp~~-~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~-~~~a~~Al~~l~--g~~l~gr 161 (166)
.......++.|||+||+.+ +++++|+++|++||.|..|.+... . -.|||.|.+ .++|..|++++| |..|.|.
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g--~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG--A--KEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT--C--SEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC--C--CEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 3456678999999999999 999999999999999998654331 1 269999999 899999999994 6778887
Q ss_pred ecee
Q 031063 162 SPKK 165 (166)
Q Consensus 162 ~i~~ 165 (166)
.+++
T Consensus 87 ~~~~ 90 (121)
T 1owx_A 87 EVTW 90 (121)
T ss_dssp SEEE
T ss_pred EEEE
Confidence 6653
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=3.8e-10 Score=74.19 Aligned_cols=70 Identities=16% Similarity=0.068 Sum_probs=55.0
Q ss_pred CCCCcEEEEcCCCC----CC-cH---HHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCe
Q 031063 90 FSPDLKLFVGNLPF----SV-DS---AQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 161 (166)
Q Consensus 90 ~~~~~~lfVgnLp~----~~-t~---~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr 161 (166)
.+++.+|+|.-.+. .. ++ .+|.+.|.+||.|..+.+... .+||+|.+.+.|.+|++ |||..++||
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 45678888877652 22 32 578999999999877433321 38999999999999998 999999999
Q ss_pred eceeC
Q 031063 162 SPKKK 166 (166)
Q Consensus 162 ~i~~k 166 (166)
.|+|+
T Consensus 77 ~LkV~ 81 (91)
T 2dnr_A 77 TITIA 81 (91)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.03 E-value=4.4e-10 Score=85.19 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=53.4
Q ss_pred CcHHHHHHHhhccCceeE--EEec----CCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 105 VDSAQLAGLFETAGNVEM--VIYD----KVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 105 ~t~~~l~~~F~~~G~i~~--i~~~----~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
-.+++|++.|++||.|.. |..+ ..+|+++|++||+|.+.++|.+|++.|||..++||.|++
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 456889999999999998 4433 345699999999999999999999999999999999976
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.1e-09 Score=72.38 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCCCCcEEEEcCCCCC------CcH---HHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeC
Q 031063 89 NFSPDLKLFVGNLPFS------VDS---AQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 159 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~------~t~---~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~ 159 (166)
..+++.+|+|.-++.. .++ .+|.+.|.+||+|..+.+..+ -+||+|.+.+.|.+||+ |||..++
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d------~~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG------QMLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT------EEEEECSCSHHHHHHHH-GGGSEET
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC------cEEEEEcChHHHHHHHh-cCCeeeC
Confidence 4567889999877643 222 468899999998877433322 29999999999999998 9999999
Q ss_pred CeeceeC
Q 031063 160 KLSPKKK 166 (166)
Q Consensus 160 gr~i~~k 166 (166)
||.|+++
T Consensus 84 Gr~L~V~ 90 (95)
T 1ufw_A 84 GRAVKIS 90 (95)
T ss_dssp TEEEEEE
T ss_pred CeEEEEe
Confidence 9999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=3.1e-07 Score=62.10 Aligned_cols=71 Identities=6% Similarity=0.012 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcc-----CceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETA-----GNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~-----G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
+..++|-+-|||..+++..|+.+.+.+ |.|..|.+.++ -|-|+|+|.+...|.+|.-++||.+|+||.|+.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC----CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 447888899999999999999999999 99988766654 357899999999999999899999999999975
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=6.2e-05 Score=50.35 Aligned_cols=70 Identities=16% Similarity=-0.055 Sum_probs=56.2
Q ss_pred CCcEEEEcCCCCCCc-----HHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 92 PDLKLFVGNLPFSVD-----SAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t-----~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
...+|+|.||+.++= .+.++++|..|+.+....+-+- -.-..|.|.+.++|.+|...||+..+.|+.|++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 467899999987652 2578999999999887444331 125579999999999999999999999999875
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.62 E-value=0.00036 Score=46.07 Aligned_cols=57 Identities=30% Similarity=0.395 Sum_probs=46.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 031063 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 153 (166)
Q Consensus 89 ~~~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l 153 (166)
....+..++| +.|..+...||.++|+.||.|.. .+=|. -|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3344556666 99999999999999999997755 44343 8999999999999999865
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.00057 Score=45.57 Aligned_cols=69 Identities=20% Similarity=0.075 Sum_probs=55.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhc-----cCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeece
Q 031063 90 FSPDLKLFVGNLPFSVDSAQLAGLFET-----AGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 164 (166)
Q Consensus 90 ~~~~~~lfVgnLp~~~t~~~l~~~F~~-----~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~ 164 (166)
.....+|.|.|||.++.++.|.-+|+. -|+|+.+.+++ +-|+|+|.+.+.|++.+++ ..+.|+|.+|.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 345789999999999999999999987 25677677765 4789999999999999974 35666766665
Q ss_pred e
Q 031063 165 K 165 (166)
Q Consensus 165 ~ 165 (166)
|
T Consensus 78 V 78 (104)
T 2dhx_A 78 L 78 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.38 E-value=0.00083 Score=43.89 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=52.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeEEEe---cCCCC-CcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY---DKVTG-RSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~---~~~tg-~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
.+|.|.+||+.++|+++.+.+.....+....+ +...+ ..-.-|||.|.+.+++..-.+.++|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 57899999999999999999998877655222 11111 233578999999999999999999987654
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.0013 Score=45.08 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=52.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCee
Q 031063 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 162 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~ 162 (166)
...+-|-|-+.|... ...+...|++||+|.+.... . ...+-.|.|.+..+|++||. .||..|+|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~--~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS--N--TGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC--S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC--C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 346778888898884 67788889999999885542 1 23488999999999999997 6999998643
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.07 E-value=0.00078 Score=44.56 Aligned_cols=53 Identities=30% Similarity=0.421 Sum_probs=43.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~ 154 (166)
..++| +.|..+...||.++|+.||.|.. .+=|. -|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 44566 99999999999999999997655 44332 89999999999999998653
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.75 E-value=0.0007 Score=56.62 Aligned_cols=56 Identities=9% Similarity=0.217 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHH
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 151 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~ 151 (166)
..+.|||. .+..+++.+|.++|++||.|..+.+++..| -|+.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHh
Confidence 36899997 799999999999999999999987776544 599999999999887764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.64 E-value=0.0036 Score=43.45 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=49.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE-EEecC--------------CCC-CcccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VIYDK--------------VTG-RSRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~-i~~~~--------------~tg-~~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
..-|.|=+.|.+.. ..+-+.|++||.|.+ +...+ ..+ ....+-.|+|++..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34566777876644 556678999999976 32211 001 134577999999999999996 6999
Q ss_pred EeCCeecee
Q 031063 157 VSNKLSPKK 165 (166)
Q Consensus 157 ~l~gr~i~~ 165 (166)
.++|.-|-+
T Consensus 85 ii~G~mIGV 93 (132)
T 3p3d_A 85 VFNGVLLGV 93 (132)
T ss_dssp EETTEECEE
T ss_pred EeCcEEEEE
Confidence 999985544
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.36 E-value=0.0053 Score=40.46 Aligned_cols=68 Identities=12% Similarity=0.215 Sum_probs=49.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeEEEe---cCCCC-CcccEEEEEEcCHHHHHHHHHHhCCcEeCC
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIY---DKVTG-RSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 160 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~---~~~tg-~~~G~~FV~f~~~~~a~~Al~~l~g~~l~g 160 (166)
.-+|.|..||+.++|+++.+.+..+-.+....+ +...+ ..-..|||.|.+.++...-.+.++|+.+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 468999999999999998888776544432111 11111 122468999999999999999999987654
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.15 E-value=0.65 Score=39.10 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=44.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCceeEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 031063 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 154 (166)
Q Consensus 92 ~~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~ 154 (166)
.+..++|+ ++..+...+|.++|+.||.+.-.-+|. -.|||.|.+.+.|..+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 34566776 888899999999999999765433332 379999999999999999884
No 220
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.48 E-value=0.39 Score=31.66 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCCCcHHH
Q 031063 91 SPDLKLFVGNLPFSVDSAQ 109 (166)
Q Consensus 91 ~~~~~lfVgnLp~~~t~~~ 109 (166)
....+|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456799999999998764
No 221
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=64.40 E-value=12 Score=22.40 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=36.7
Q ss_pred EEEEc-CCCCCCcHHHHHHHhhccCceeE-----EEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcEeCCeecee
Q 031063 95 KLFVG-NLPFSVDSAQLAGLFETAGNVEM-----VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 165 (166)
Q Consensus 95 ~lfVg-nLp~~~t~~~l~~~F~~~G~i~~-----i~~~~~tg~~~G~~FV~f~~~~~a~~Al~~l~g~~l~gr~i~~ 165 (166)
++||. +=-..+...+|..++..-+.+.. |.+.. .|.||+-.. +.+..+++.|++..+.|+.+++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v 71 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKV 71 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEECT-TCHHHHHHHHTTCCC---CCCE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEECH-HHHHHHHHHhccccCcCceEEE
Confidence 45553 22345666777777776555533 33322 288888764 4567788889999999998864
No 222
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=52.00 E-value=36 Score=22.33 Aligned_cols=46 Identities=7% Similarity=-0.052 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHhhc-cCceeE------EEecCCCCCcccEEEEEEcCHHHHHHH
Q 031063 103 FSVDSAQLAGLFET-AGNVEM------VIYDKVTGRSRGFGFVTMSSVEEVEAA 149 (166)
Q Consensus 103 ~~~t~~~l~~~F~~-~G~i~~------i~~~~~tg~~~G~~FV~f~~~~~a~~A 149 (166)
...+..+|++...+ |+.-.. +...-..|++.|||.| |++.+.|.+-
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35678888877765 443111 2223345777888866 7888877653
No 223
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=49.03 E-value=21 Score=23.23 Aligned_cols=46 Identities=4% Similarity=0.070 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHhhc-cCceeE------EEecCCCCCcccEEEEEEcCHHHHHHH
Q 031063 103 FSVDSAQLAGLFET-AGNVEM------VIYDKVTGRSRGFGFVTMSSVEEVEAA 149 (166)
Q Consensus 103 ~~~t~~~l~~~F~~-~G~i~~------i~~~~~tg~~~G~~FV~f~~~~~a~~A 149 (166)
...+..+|++...+ |+.-.. +...-..|++.|||.| |++.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56778888887765 333111 2333345777788866 7787777654
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=46.24 E-value=50 Score=23.61 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=32.4
Q ss_pred EEEEcCCCC---------CCcHHHHHHHh--hccCceeE-EEecCCCCCcccEEEEEEcC
Q 031063 95 KLFVGNLPF---------SVDSAQLAGLF--ETAGNVEM-VIYDKVTGRSRGFGFVTMSS 142 (166)
Q Consensus 95 ~lfVgnLp~---------~~t~~~l~~~F--~~~G~i~~-i~~~~~tg~~~G~~FV~f~~ 142 (166)
.+.|-|++. .....+|++.| ..|..++. ..+.+ ..+.|++.|.|..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY--LGHSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS--SBEEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC--CCCceeEEEEecC
Confidence 445556665 24557899977 99988877 55554 3478999999964
No 225
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=41.92 E-value=5.2 Score=27.87 Aligned_cols=28 Identities=32% Similarity=0.554 Sum_probs=14.9
Q ss_pred HHHHHHhhccCceeEEEecCCCCCcccEEEEEEc
Q 031063 108 AQLAGLFETAGNVEMVIYDKVTGRSRGFGFVTMS 141 (166)
Q Consensus 108 ~~l~~~F~~~G~i~~i~~~~~tg~~~G~~FV~f~ 141 (166)
+|+.++|...|.|.-. +. .+|||||+..
T Consensus 2 ~~~~~l~~~~G~Vkwf--n~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF--NV----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE--ET----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE--EC----CCCeeEEeeC
Confidence 3445556666666532 22 3689999865
No 226
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=40.90 E-value=45 Score=22.84 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHhhc-cCceeE------EEecCCCCCcccEEEEEEcCHHHHHH
Q 031063 103 FSVDSAQLAGLFET-AGNVEM------VIYDKVTGRSRGFGFVTMSSVEEVEA 148 (166)
Q Consensus 103 ~~~t~~~l~~~F~~-~G~i~~------i~~~~~tg~~~G~~FV~f~~~~~a~~ 148 (166)
..++..||++-+.+ |+.-.+ +...-..|++.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 35788999988866 443212 2233345777788876 788887765
No 227
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=37.37 E-value=70 Score=20.72 Aligned_cols=45 Identities=2% Similarity=-0.085 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHhhc-cCceeE------EEecCCCCCcccEEEEEEcCHHHHHH
Q 031063 103 FSVDSAQLAGLFET-AGNVEM------VIYDKVTGRSRGFGFVTMSSVEEVEA 148 (166)
Q Consensus 103 ~~~t~~~l~~~F~~-~G~i~~------i~~~~~tg~~~G~~FV~f~~~~~a~~ 148 (166)
...+..+|++...+ |+.-.. +...-..|++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56778888877765 333211 3333446778888866 788877765
No 228
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=37.06 E-value=43 Score=23.57 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=27.2
Q ss_pred CcHHHHHHHhhccCceeE-----EEecCCCCCcccEEEEE
Q 031063 105 VDSAQLAGLFETAGNVEM-----VIYDKVTGRSRGFGFVT 139 (166)
Q Consensus 105 ~t~~~l~~~F~~~G~i~~-----i~~~~~tg~~~G~~FV~ 139 (166)
.++++|+++-.+.|.+.. +..|.++|+.+.|||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 578999999999999865 33343489999888864
No 229
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=34.51 E-value=32 Score=21.63 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.1
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 132 SRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 132 ~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
-.||-||++...++...+++...|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 6899999999999999999877775
No 230
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=29.37 E-value=38 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHhhc-cCceeE-EE-----ecCCCCCcccEEEEEEcCHHHHHH
Q 031063 103 FSVDSAQLAGLFET-AGNVEM-VI-----YDKVTGRSRGFGFVTMSSVEEVEA 148 (166)
Q Consensus 103 ~~~t~~~l~~~F~~-~G~i~~-i~-----~~~~tg~~~G~~FV~f~~~~~a~~ 148 (166)
..++..||++-+.. |+.-.+ |+ ..-..|.+.|||.| |++.+.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 46778888887766 443222 22 22235677788876 788887765
No 231
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=26.38 E-value=65 Score=20.70 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHhhccCceeE--EEec-----CCCCCcccEEEEEEcCHHHHHH
Q 031063 103 FSVDSAQLAGLFETAGNVEM--VIYD-----KVTGRSRGFGFVTMSSVEEVEA 148 (166)
Q Consensus 103 ~~~t~~~l~~~F~~~G~i~~--i~~~-----~~tg~~~G~~FV~f~~~~~a~~ 148 (166)
...+..+|++...+.-.+.. |+.+ -..|++.|||.| |++.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677888777665322222 3222 224667777765 666655544
No 232
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=26.35 E-value=33 Score=26.07 Aligned_cols=29 Identities=28% Similarity=0.532 Sum_probs=23.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCceeE
Q 031063 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEM 122 (166)
Q Consensus 93 ~~~lfVgnLp~~~t~~~l~~~F~~~G~i~~ 122 (166)
..-+.|+|||+.++..-|.+++.. +.+..
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~ 138 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFAR 138 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCE
Confidence 356789999999999999999877 65554
No 233
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.11 E-value=22 Score=27.18 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=23.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCceeE
Q 031063 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEM 122 (166)
Q Consensus 94 ~~lfVgnLp~~~t~~~l~~~F~~~G~i~~ 122 (166)
....|+|||+.++..-|.+++.....+..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~ 143 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVID 143 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccE
Confidence 45689999999999999999876555544
No 234
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.09 E-value=43 Score=21.80 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=21.4
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCc
Q 031063 132 SRGFGFVTMSSVEEVEAAAQQFNGY 156 (166)
Q Consensus 132 ~~G~~FV~f~~~~~a~~Al~~l~g~ 156 (166)
-+||-||+=....+...|++.+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5899999999999999998766554
No 235
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.08 E-value=62 Score=25.66 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=18.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhc
Q 031063 95 KLFVGNLPFSVDSAQLAGLFET 116 (166)
Q Consensus 95 ~lfVgnLp~~~t~~~l~~~F~~ 116 (166)
-..|||||+.++..-|.+++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999888887764
No 236
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.63 E-value=48 Score=15.41 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=9.2
Q ss_pred HHHHHHHhhccC
Q 031063 107 SAQLAGLFETAG 118 (166)
Q Consensus 107 ~~~l~~~F~~~G 118 (166)
-.+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467888888876
No 237
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.72 E-value=21 Score=26.89 Aligned_cols=27 Identities=33% Similarity=0.547 Sum_probs=22.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCceeE
Q 031063 96 LFVGNLPFSVDSAQLAGLFETAGNVEM 122 (166)
Q Consensus 96 lfVgnLp~~~t~~~l~~~F~~~G~i~~ 122 (166)
..|+|+|+.++...|.+++...+.+..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~ 125 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIED 125 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChhe
Confidence 379999999999999999987655544
No 238
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=20.70 E-value=39 Score=19.88 Aligned_cols=11 Identities=45% Similarity=1.056 Sum_probs=8.5
Q ss_pred cccEEEEEEcC
Q 031063 132 SRGFGFVTMSS 142 (166)
Q Consensus 132 ~~G~~FV~f~~ 142 (166)
.+|||||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 47999998654
Done!