Query 031064
Match_columns 166
No_of_seqs 118 out of 164
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szr_A Interferon-induced GTP- 99.5 1.3E-14 4.4E-19 131.2 5.6 64 1-66 541-604 (608)
2 3zvr_A Dynamin-1; hydrolase, D 99.4 4.2E-14 1.4E-18 133.6 4.5 63 1-65 700-762 (772)
3 3t34_A Dynamin-related protein 89.2 0.057 2E-06 44.6 -0.6 23 41-63 333-355 (360)
4 1yoz_A Hypothetical protein AF 83.3 0.76 2.6E-05 35.1 2.9 59 11-71 23-81 (116)
5 2oxj_A Hybrid alpha/beta pepti 45.8 18 0.00063 22.4 2.8 25 31-55 7-31 (34)
6 4hpq_C ATG17, KLTH0D15642P; au 44.7 94 0.0032 27.7 8.4 41 19-66 327-367 (413)
7 3w03_C DNA repair protein XRCC 41.9 46 0.0016 26.9 5.5 41 15-56 143-183 (184)
8 3c3f_A Alpha/beta peptide with 41.6 23 0.0008 21.9 2.8 25 31-55 7-31 (34)
9 3c3g_A Alpha/beta peptide with 41.4 24 0.00082 21.7 2.8 25 31-55 6-30 (33)
10 1use_A VAsp, vasodilator-stimu 40.5 28 0.00095 22.7 3.2 31 10-40 8-38 (45)
11 2bni_A General control protein 38.4 19 0.00065 22.3 2.1 25 31-55 7-31 (34)
12 2rqw_B 24-meric peptide from s 38.2 20 0.00067 21.1 2.0 18 146-163 7-24 (26)
13 2her_A Fragment, farnesyl pyro 34.5 82 0.0028 27.2 6.3 55 19-73 289-343 (368)
14 2hy6_A General control protein 33.6 37 0.0013 21.0 2.8 25 31-55 7-31 (34)
15 3m48_A General control protein 33.0 30 0.001 21.3 2.3 24 31-54 6-29 (33)
16 3kor_A Possible Trp repressor; 32.6 13 0.00045 28.2 0.8 61 2-69 15-80 (119)
17 2o6n_A RH4B designed peptide; 31.2 52 0.0018 20.2 3.2 17 6-22 10-26 (35)
18 2py8_A Hypothetical protein RB 30.6 1.3E+02 0.0045 23.5 6.3 19 29-47 52-70 (147)
19 2yy0_A C-MYC-binding protein; 30.0 66 0.0022 20.9 3.8 36 28-63 15-50 (53)
20 1uo4_A General control protein 29.5 37 0.0013 21.0 2.3 25 31-55 7-31 (34)
21 2wq1_A General control protein 28.5 52 0.0018 20.2 2.8 25 31-55 6-30 (33)
22 2r2v_A GCN4 leucine zipper; co 27.2 56 0.0019 20.2 2.8 25 31-55 7-31 (34)
23 2e2r_A Estrogen-related recept 27.0 2.2E+02 0.0075 22.0 7.5 46 10-55 172-220 (244)
24 1kd8_B GABH BLL, GCN4 acid bas 27.0 56 0.0019 20.4 2.8 26 31-56 7-32 (36)
25 2oxl_A Hypothetical protein YM 26.9 58 0.002 22.0 3.2 25 4-28 27-58 (64)
26 2nw8_A Tryptophan 2,3-dioxygen 26.6 2.5E+02 0.0085 23.8 7.8 57 7-69 49-106 (306)
27 3brv_B NF-kappa-B essential mo 26.5 64 0.0022 22.7 3.4 35 31-68 7-41 (70)
28 1yye_A ER-beta, estrogen recep 26.2 2E+02 0.007 22.7 6.9 37 10-46 163-205 (268)
29 2ve7_A Kinetochore protein HEC 26.0 1.3E+02 0.0043 25.3 5.9 34 30-63 183-216 (315)
30 2p1t_A Retinoic acid receptor 25.6 2.2E+02 0.0075 21.6 6.8 37 10-46 166-205 (240)
31 3oja_B Anopheles plasmodium-re 25.1 2.7E+02 0.0091 23.9 7.8 25 33-57 531-555 (597)
32 4aj5_A SKA1, spindle and kinet 24.8 2.1E+02 0.007 21.0 6.6 54 9-63 25-78 (91)
33 3vi8_A Peroxisome proliferator 24.6 1.7E+02 0.0058 23.5 6.2 42 4-45 184-239 (273)
34 2hc4_A Vitamin D receptor; alp 24.2 2E+02 0.007 23.3 6.7 47 10-56 228-277 (302)
35 3cqv_A Nuclear receptor subfam 23.8 1.5E+02 0.005 22.2 5.3 30 10-39 144-176 (199)
36 3p8c_D Wiskott-aldrich syndrom 23.0 1.9E+02 0.0066 24.5 6.4 57 8-65 27-83 (279)
37 1kd8_A GABH AIV, GCN4 acid bas 22.9 74 0.0025 19.8 2.8 25 31-55 7-31 (36)
38 2ocf_A Estrogen receptor; estr 22.4 2.5E+02 0.0086 22.8 6.9 48 10-57 177-230 (298)
39 1hjb_A Ccaat/enhancer binding 22.3 1E+02 0.0035 21.9 4.0 34 32-65 43-76 (87)
40 3bbp_D GRIP and coiled-coil do 22.1 86 0.0029 22.1 3.4 56 11-71 13-68 (71)
41 2zxx_A Geminin; coiled-coil, c 22.0 66 0.0023 22.9 2.8 39 22-61 39-77 (79)
42 3v3e_B Nuclear receptor subfam 21.4 2.4E+02 0.0084 22.3 6.5 41 4-44 158-213 (257)
43 1p9y_A Trigger factor, TF; alp 21.3 1.4E+02 0.0048 21.4 4.6 10 2-11 52-61 (121)
44 1hg4_A Ultraspiracle; nuclear 20.8 2.1E+02 0.0073 22.4 6.0 36 10-45 199-237 (279)
No 1
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.50 E-value=1.3e-14 Score=131.20 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=61.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031064 1 MVEQAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 1 ~VPKAIMl~LVnkAKe~LQneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~qls 66 (166)
+|||+||||||+++++.||++||.+||+ .+.+++||+||+.|++||++|++|++.|++|.+.|+
T Consensus 541 ~vP~~I~~~lv~~~~~~lq~~l~~~l~~--~~~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~ 604 (608)
T 3szr_A 541 HIPLIIQFFMLQTYGQQLQKAMLQLLQD--KDTYSWLLKERSDTSDKRKFLKERLARLTQARRRLA 604 (608)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTTTC--HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999996 588999999999999999999999999999998775
No 2
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.44 E-value=4.2e-14 Score=133.63 Aligned_cols=63 Identities=14% Similarity=0.270 Sum_probs=59.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031064 1 MVEQAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 1 ~VPKAIMl~LVnkAKe~LQneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~ql 65 (166)
+|||||||+|||.+|+.|+++|+.+||+. ..+++||.|++.+++||++|.+|+++||+|.+-+
T Consensus 700 ~~pk~im~~~vn~~k~~~~~el~~~ly~~--~~~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii 762 (772)
T 3zvr_A 700 LMPKTIMHLMINNTKEFIFSELLANLYSC--GDQNTLMEESAEQAQRRDEMLRMYHALKEALSII 762 (772)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTHHHHHHHT--CCTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999975 7899999999999999999999999999997654
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.21 E-value=0.057 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Q 031064 41 DQNVKRRRDRYQKQSELLSKLTR 63 (166)
Q Consensus 41 d~~v~~RRe~c~kmLelLkkA~~ 63 (166)
||+|++||..|.|.|++|++|-.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~ 355 (360)
T 3t34_A 333 DPAIMERRSAISKRLELYRAAQS 355 (360)
T ss_dssp ----CCCTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999854
No 4
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=83.33 E-value=0.76 Score=35.14 Aligned_cols=59 Identities=22% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 031064 11 VEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 71 (166)
Q Consensus 11 VnkAKe~LQneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~qlsihdnr 71 (166)
|.+||+-.-.+=+.++++..-+.+-.+..--..+++.=+.|-+||+.| |..||++|=+|
T Consensus 23 VeeAk~L~D~eni~EmFRsD~E~I~~~f~~G~~t~EEa~~nl~~LK~Y--avSQL~~Hy~r 81 (116)
T 1yoz_A 23 VEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLLKTY--VVSQLSIHFER 81 (116)
T ss_dssp GGGHHHHTCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH--HHHTHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHhhHHHHHHHHHcCCccHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 666766666666777776545555566666677778888999999998 78999999999
No 5
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=45.83 E-value=18 Score=22.37 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=18.9
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
++.+++||.|+..+..+=.+++.+|
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4678999999998887766666554
No 6
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=44.69 E-value=94 Score=27.65 Aligned_cols=41 Identities=34% Similarity=0.507 Sum_probs=30.6
Q ss_pred HHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031064 19 LNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 19 QneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~qls 66 (166)
+.+||.... .-++.||.| |.+||.-.+++-..+++|.++|-
T Consensus 327 L~~~Y~~f~----~aY~~lL~E---v~RRr~~~~~~~~i~~~~~~~L~ 367 (413)
T 4hpq_C 327 LLDFYANFE----RSYHNLLKE---VKRRKETAAKLSQILKSCETQLE 367 (413)
T ss_dssp HHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 357778874 88888888999999999988874
No 7
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=41.86 E-value=46 Score=26.86 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHH
Q 031064 15 KEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSE 56 (166)
Q Consensus 15 Ke~LQneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLe 56 (166)
-.+|+..++..+-.. .+....|-+|++-+.+.+.+|.+++|
T Consensus 143 i~elid~~ld~~~~L-~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 143 IRELICYCLDTIAEN-QAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555542 46788999999999999999999886
No 8
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.60 E-value=23 Score=21.89 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=18.8
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
++.+++||.|+..+...=.+++++|
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4678899999888877766666554
No 9
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=41.40 E-value=24 Score=21.73 Aligned_cols=25 Identities=8% Similarity=0.172 Sum_probs=18.6
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
++.+++||.|+..+...=.+++.+|
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678899999888877666666554
No 10
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=40.54 E-value=28 Score=22.68 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHhc
Q 031064 10 QVEKAKEDMLNQLYSSVGAQSTARIEELLQE 40 (166)
Q Consensus 10 LVnkAKe~LQneL~s~LYk~~~~~l~eLL~E 40 (166)
-...-|++|+.++-.+|-|-.++-|+.+-.|
T Consensus 8 dle~~KqEIL~E~RkElqK~K~EIIeAi~~E 38 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKEEIIEAFVQE 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888887666666655443
No 11
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=38.37 E-value=19 Score=22.30 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=19.2
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
++.+++||.|...+...=.+++++|
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4778999999998887766666554
No 12
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=38.17 E-value=20 Score=21.07 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=13.7
Q ss_pred cCCCCCCCCCCCCCCCCC
Q 031064 146 RRTPNRVPPPPPPTQSGS 163 (166)
Q Consensus 146 rrtp~r~pp~pp~~~~~~ 163 (166)
+-.|.|+.|-||++++.+
T Consensus 7 KFiPsRPAPKPP~s~t~s 24 (26)
T 2rqw_B 7 KFIPSRPAPKPPSSASAS 24 (26)
T ss_dssp SSCCSSCCCCCSSCSCCC
T ss_pred ccccCCCCCCCCCCCccc
Confidence 678999888888766544
No 13
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=34.46 E-value=82 Score=27.25 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=43.5
Q ss_pred HHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 031064 19 LNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNRAA 73 (166)
Q Consensus 19 QneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~qlsihdnraa 73 (166)
+++++.++|+..++.+.+|+.+...+..-++...+..+...++.++|..-+.|.+
T Consensus 289 ~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~ 343 (368)
T 2her_A 289 MKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKV 343 (368)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 4555666676555789999999999988888888888888888888888777743
No 14
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=33.56 E-value=37 Score=20.97 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=19.0
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
++.+++||.++.++...=.+++++|
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4678999999988887766666554
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=32.96 E-value=30 Score=21.27 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=17.4
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQ 54 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~km 54 (166)
++.+++||.|+..+...=.+++.+
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 467899999998887665555544
No 16
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=32.56 E-value=13 Score=28.22 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccch-----HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 031064 2 VEQAVVLCQVEKAKEDMLNQLYSSVGAQST-----ARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHD 69 (166)
Q Consensus 2 VPKAIMl~LVnkAKe~LQneL~s~LYk~~~-----~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~qlsihd 69 (166)
||.-.| +..+-|+.-..+|+.-|..-.. ..|++|+ +...++.+.+++++++-+.+.++..|
T Consensus 15 ~~~~~m--~~~~~K~~~~d~L~~AIl~l~~~ee~~~fl~dL~-----T~~E~~aLs~R~eV~klL~~G~syre 80 (119)
T 3kor_A 15 VPRGSM--QIEKLRGAALDELFDAILTLENREECYQFFDDLC-----TVNEIQSLSQRLQVAKMIKQGYTYAT 80 (119)
T ss_dssp ----CC--GGGGGCSHHHHHHHHHHHTCCSHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred Cccchh--hHhhhccccHHHHHHHHHHhCCHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHcCCCHHH
Confidence 555554 3455666666777666554322 2344444 34444455555666665555555544
No 17
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=31.20 E-value=52 Score=20.16 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031064 6 VVLCQVEKAKEDMLNQL 22 (166)
Q Consensus 6 IMl~LVnkAKe~LQneL 22 (166)
-+..|+.++|+.|+.++
T Consensus 10 eiaylikkakeeileei 26 (35)
T 2o6n_A 10 EIAYLIKKAKEEILEEI 26 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35568888888887664
No 18
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=30.59 E-value=1.3e+02 Score=23.53 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.1
Q ss_pred cchHHHHHHHhcCHHHHHH
Q 031064 29 QSTARIEELLQEDQNVKRR 47 (166)
Q Consensus 29 ~~~~~l~eLL~Ed~~v~~R 47 (166)
.+++-|.+|++|++.++.|
T Consensus 52 DGd~fL~~Lmre~~~LAlR 70 (147)
T 2py8_A 52 NGETFLTELLDENKELVLR 70 (147)
T ss_dssp SHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHhhCHHHHHH
Confidence 3456799999999998765
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.00 E-value=66 Score=20.87 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=28.5
Q ss_pred ccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Q 031064 28 AQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTR 63 (166)
Q Consensus 28 k~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~ 63 (166)
......++.|..|...+.++-+++.+.++-|+.=.+
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556788999999999999888888888877776443
No 20
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.52 E-value=37 Score=20.99 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=17.7
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
++..++||.|+..+...=.+++++|
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4678888888888877655555543
No 21
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.46 E-value=52 Score=20.21 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=17.5
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
++.+++||.+..++...=.+.+++|
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4678888888887776665555554
No 22
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.19 E-value=56 Score=20.18 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=17.2
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
++.+++|+.|..++...=.+++++|
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3567888888777776666666554
No 23
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=27.01 E-value=2.2e+02 Score=22.03 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHH---hccchHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 10 QVEKAKEDMLNQLYSSV---GAQSTARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 10 LVnkAKe~LQneL~s~L---Yk~~~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
.|++.++.++..|..-+ |.....+|.+||.==+.+..--.++.+.+
T Consensus 172 ~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l 220 (244)
T 2e2r_A 172 AVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHF 220 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776665544 44445678888876555544444444333
No 24
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.95 E-value=56 Score=20.41 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=19.6
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQSE 56 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmLe 56 (166)
++.+++||.+..++...=.++++++.
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 36788999998888877766666653
No 25
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=26.87 E-value=58 Score=22.04 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=16.4
Q ss_pred hHHHHHHHHH-------HHHHHHHHHHHHHhc
Q 031064 4 QAVVLCQVEK-------AKEDMLNQLYSSVGA 28 (166)
Q Consensus 4 KAIMl~LVnk-------AKe~LQneL~s~LYk 28 (166)
|||++.||.+ .+.++++.|++-|..
T Consensus 27 KaIi~~LI~rLE~~~d~~~~d~yR~lLe~v~~ 58 (64)
T 2oxl_A 27 KNIILSLIHSLETTSDILKADVIRKTLEIVLR 58 (64)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 7788888775 345666666666554
No 26
>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1 PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A
Probab=26.58 E-value=2.5e+02 Score=23.84 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=41.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 031064 7 VLC-QVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHD 69 (166)
Q Consensus 7 Ml~-LVnkAKe~LQneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~qlsihd 69 (166)
|+| .|-++.|-..+.++-+|- .+-++|.+++ +..-.+.|.+....++.++.|+.|.+
T Consensus 49 ~lFIi~HQ~~ELWfKlil~EL~-----~a~~~l~~~~-l~~a~~~L~Rv~ri~~~L~~~~~vL~ 106 (306)
T 2nw8_A 49 MLFIIQHQTSELWLKLLAHELR-----AAIVHLQRDE-VWQCRKVLARSKQVLRQLTEQWSVLE 106 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-----HHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556 556677777777777776 3455555554 33444889999999999999999984
No 27
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=26.48 E-value=64 Score=22.70 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=24.2
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIH 68 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~qlsih 68 (166)
++.|.+||.|+..+ |+.++..=..++.-.+-|+.|
T Consensus 7 ~e~~q~ll~EN~~L---reAlkqsNq~mkeR~eeL~~w 41 (70)
T 3brv_B 7 PETLQRCLEENQEL---RDAIRQSNQILRERCEELLHF 41 (70)
T ss_dssp -CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 47788899998876 455555666666666667665
No 28
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=26.17 E-value=2e+02 Score=22.73 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHH------hccchHHHHHHHhcCHHHHH
Q 031064 10 QVEKAKEDMLNQLYSSV------GAQSTARIEELLQEDQNVKR 46 (166)
Q Consensus 10 LVnkAKe~LQneL~s~L------Yk~~~~~l~eLL~Ed~~v~~ 46 (166)
.|++.++.++..|..-+ |.....+|.+||.==+.+..
T Consensus 163 ~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~Lp~Lr~ 205 (268)
T 1yye_A 163 KLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRH 205 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH
Confidence 34445555555554433 22234567777765555433
No 29
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.05 E-value=1.3e+02 Score=25.31 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=27.1
Q ss_pred chHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Q 031064 30 STARIEELLQEDQNVKRRRDRYQKQSELLSKLTR 63 (166)
Q Consensus 30 ~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~ 63 (166)
....++.|-.|...+.++-++++++.+.++++..
T Consensus 183 ~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~ 216 (315)
T 2ve7_A 183 DAFKLESLEAKNRALNEQIARLEQERSTANKANA 216 (315)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3457888888888888888888888888888643
No 30
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=25.58 E-value=2.2e+02 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHH---hccchHHHHHHHhcCHHHHH
Q 031064 10 QVEKAKEDMLNQLYSSV---GAQSTARIEELLQEDQNVKR 46 (166)
Q Consensus 10 LVnkAKe~LQneL~s~L---Yk~~~~~l~eLL~Ed~~v~~ 46 (166)
.|++.++.+++.|..-+ |.....+|.+||.=-+.+..
T Consensus 166 ~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~ 205 (240)
T 2p1t_A 166 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRS 205 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 35666666665554432 33345678888876665544
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.13 E-value=2.7e+02 Score=23.90 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=10.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH
Q 031064 33 RIEELLQEDQNVKRRRDRYQKQSEL 57 (166)
Q Consensus 33 ~l~eLL~Ed~~v~~RRe~c~kmLel 57 (166)
.++++..+-+.+.++++++++.++-
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhh
Confidence 3444444444444444444443333
No 32
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.84 E-value=2.1e+02 Score=20.97 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Q 031064 9 CQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTR 63 (166)
Q Consensus 9 ~LVnkAKe~LQneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~ 63 (166)
-|=+-.++--++..+.+|+- +--.+.+||.+=+-=+++-++..+.|+-|....+
T Consensus 25 ~Lr~~gqdP~lk~~L~Kig~-Ei~~l~eLLn~~E~eV~~Qe~~~~sLKEL~~s~e 78 (91)
T 4aj5_A 25 SLRNCGQEPTLKTVLNKIGD-EIIVINELLNKLELEIQYQEQTNNSLKELCESLE 78 (91)
T ss_dssp HHHHHHHCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666677777774 3446899999999989888888888777766554
No 33
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=24.56 E-value=1.7e+02 Score=23.51 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=25.9
Q ss_pred hHHHHH-----------HHHHHHHHHHHHHHHHH---hccchHHHHHHHhcCHHHH
Q 031064 4 QAVVLC-----------QVEKAKEDMLNQLYSSV---GAQSTARIEELLQEDQNVK 45 (166)
Q Consensus 4 KAIMl~-----------LVnkAKe~LQneL~s~L---Yk~~~~~l~eLL~Ed~~v~ 45 (166)
|||++| .|++.++.++..|..-+ |......|..||.==|.+.
T Consensus 184 kAivLf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL~~Lp~LR 239 (273)
T 3vi8_A 184 VAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLR 239 (273)
T ss_dssp HHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHH
Confidence 677766 67777777776665544 3334456777776545443
No 34
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=24.21 E-value=2e+02 Score=23.33 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHH---hccchHHHHHHHhcCHHHHHHHHHHHHHHH
Q 031064 10 QVEKAKEDMLNQLYSSV---GAQSTARIEELLQEDQNVKRRRDRYQKQSE 56 (166)
Q Consensus 10 LVnkAKe~LQneL~s~L---Yk~~~~~l~eLL~Ed~~v~~RRe~c~kmLe 56 (166)
.|++.++.++..|..-+ |.....+|.+||.==+.+..--.++.+.+-
T Consensus 228 ~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~~LLl~L~~Lr~l~~~~~e~l~ 277 (302)
T 2hc4_A 228 RIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYR 277 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777776665544 444456788888766655444444444443
No 35
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=23.75 E-value=1.5e+02 Score=22.17 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHH---hccchHHHHHHHh
Q 031064 10 QVEKAKEDMLNQLYSSV---GAQSTARIEELLQ 39 (166)
Q Consensus 10 LVnkAKe~LQneL~s~L---Yk~~~~~l~eLL~ 39 (166)
.|++.++.++..|..-+ |.....+|.+||.
T Consensus 144 ~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~ 176 (199)
T 3cqv_A 144 SVEALQETLIRALRTLIMKNHPNEASIFTKLLL 176 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 56666666666665544 2223344555554
No 36
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=22.96 E-value=1.9e+02 Score=24.55 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031064 8 LCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 8 l~LVnkAKe~LQneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~ql 65 (166)
.|..|-+=-.|+++| +.|-+-.++.|.+|-.|=..+..|-..++.++.-|....-||
T Consensus 27 e~V~n~tL~gilRQL-~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~l 83 (279)
T 3p8c_D 27 ECVTNISLANIIRQL-SSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQL 83 (279)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344444555566665 233333468999999999999999999999999999877653
No 37
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.90 E-value=74 Score=19.85 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=18.7
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHHH
Q 031064 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~l~eLL~Ed~~v~~RRe~c~kmL 55 (166)
++.+++||.|...+...=.++++++
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4678889998888887766666555
No 38
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=22.37 E-value=2.5e+02 Score=22.84 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHH------hccchHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 031064 10 QVEKAKEDMLNQLYSSV------GAQSTARIEELLQEDQNVKRRRDRYQKQSEL 57 (166)
Q Consensus 10 LVnkAKe~LQneL~s~L------Yk~~~~~l~eLL~Ed~~v~~RRe~c~kmLel 57 (166)
.|++.++.++..|..-+ |.....+|.+||.==+.+..--.++.+.+..
T Consensus 177 ~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LLl~Lp~Lr~i~~~~~e~l~~ 230 (298)
T 2ocf_A 177 HIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYS 230 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666555443 2223456778776655554444444444433
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.31 E-value=1e+02 Score=21.91 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=29.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031064 32 ARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 32 ~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~ql 65 (166)
..+++|-.|+..+..+=+++.+.+..|+....|+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4678899999999999999999999999888775
No 40
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=22.08 E-value=86 Score=22.12 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 031064 11 VEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 71 (166)
Q Consensus 11 VnkAKe~LQneL~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA~~qlsihdnr 71 (166)
+..+++.|...|- .+++ .-+-+.+||.|++....| +..+.++||.=.+.|--..-|
T Consensus 13 ~~~s~eel~~~L~-~~~k-~~~Hl~~LL~EsEatnar---L~eq~~lLK~EIRRlERnqeR 68 (71)
T 3bbp_D 13 AEFTKEELVQKLS-STTK-SADHLNGLLRETEATNAI---LMEQIKLLKSEIRRLERNQER 68 (71)
T ss_dssp -----------------C-TTSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTC--
T ss_pred ccCCHHHHHHHHH-HHHH-HHHHHHHHHHhccchHHH---HHHHHHHHHHHHHHHHhhHhh
Confidence 4556777777664 3444 367899999999999887 777888888877776544433
No 41
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.03 E-value=66 Score=22.90 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=23.5
Q ss_pred HHHHHhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 031064 22 LYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKL 61 (166)
Q Consensus 22 L~s~LYk~~~~~l~eLL~Ed~~v~~RRe~c~kmLelLkkA 61 (166)
|...|-.. .+.|..|-.|+..++.--+..+.|.+++++.
T Consensus 39 Lh~~ie~~-~eEi~~LkeEN~~L~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 39 LHKEIEQK-DSEIARLRKENKDLAEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444432 3455666677777766666677777766654
No 42
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=21.40 E-value=2.4e+02 Score=22.29 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=25.3
Q ss_pred hHHHHH----------HHHHHHHHHHHHHHHHHh-----ccchHHHHHHHhcCHHH
Q 031064 4 QAVVLC----------QVEKAKEDMLNQLYSSVG-----AQSTARIEELLQEDQNV 44 (166)
Q Consensus 4 KAIMl~----------LVnkAKe~LQneL~s~LY-----k~~~~~l~eLL~Ed~~v 44 (166)
|||++| .|++.++.++.-|..-+. ......|..||.-=+.+
T Consensus 158 kAivLfsd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~Lp~L 213 (257)
T 3v3e_B 158 SALVLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPEL 213 (257)
T ss_dssp HHHHHSSCCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHHHHH
Confidence 677776 677777777777755442 12345678887654444
No 43
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=21.31 E-value=1.4e+02 Score=21.40 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=6.2
Q ss_pred chhHHHHHHH
Q 031064 2 VEQAVVLCQV 11 (166)
Q Consensus 2 VPKAIMl~LV 11 (166)
||..|+..++
T Consensus 52 vP~~vi~k~y 61 (121)
T 1p9y_A 52 VPMNIVAQRY 61 (121)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5666666655
No 44
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=20.75 E-value=2.1e+02 Score=22.37 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHH---hccchHHHHHHHhcCHHHH
Q 031064 10 QVEKAKEDMLNQLYSSV---GAQSTARIEELLQEDQNVK 45 (166)
Q Consensus 10 LVnkAKe~LQneL~s~L---Yk~~~~~l~eLL~Ed~~v~ 45 (166)
.|++.++.++..|..-+ |.....+|.+||.==+.+.
T Consensus 199 ~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr 237 (279)
T 1hg4_A 199 EIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALR 237 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 56666666666665544 3333456777765444443
Done!