Query 031066
Match_columns 166
No_of_seqs 145 out of 1047
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j3l_A Demethylmenaquinone met 100.0 2.8E-53 9.7E-58 329.3 18.3 158 3-166 2-159 (164)
2 3c8o_A Regulator of ribonuclea 100.0 4E-53 1.4E-57 327.9 18.7 157 3-165 2-159 (162)
3 1q5x_A Regulator of RNAse E ac 100.0 9.1E-53 3.1E-57 325.6 18.4 157 3-165 2-159 (161)
4 2pcn_A S-adenosylmethionine:2- 100.0 1.1E-52 3.9E-57 325.1 18.6 157 4-165 1-157 (161)
5 1vi4_A Regulator of ribonuclea 100.0 1.5E-52 5.3E-57 327.8 19.0 158 3-165 5-162 (174)
6 1nxj_A Probable S-adenosylmeth 100.0 1.1E-50 3.7E-55 319.5 17.6 155 1-160 29-183 (183)
7 3noj_A 4-carboxy-4-hydroxy-2-o 100.0 8.9E-50 3E-54 325.7 15.3 157 2-164 27-184 (238)
8 3k4i_A Uncharacterized protein 100.0 1.1E-48 3.8E-53 320.3 16.2 159 2-164 21-185 (244)
9 2c5q_A RRAA-like protein YER01 100.0 6.4E-48 2.2E-52 315.2 11.0 161 2-164 8-191 (240)
10 3q58_A N-acetylmannosamine-6-p 39.3 20 0.00069 27.8 3.0 42 76-118 33-75 (229)
11 3igs_A N-acetylmannosamine-6-p 32.0 32 0.0011 26.7 3.1 41 76-117 33-74 (232)
12 3n2s_A NADPH-dependent nitro/f 27.3 24 0.00081 27.5 1.6 39 76-114 113-152 (249)
13 1zch_A Hypothetical oxidoreduc 27.3 28 0.00096 27.0 2.0 39 76-114 113-152 (255)
14 1f5v_A Oxygen-insensitive NADP 24.8 28 0.00097 26.7 1.6 39 76-114 107-146 (240)
15 1bkj_A NADPH-flavin oxidoreduc 24.0 30 0.001 26.5 1.6 39 76-114 107-146 (240)
16 1vbg_A Pyruvate,orthophosphate 23.7 1.8E+02 0.0062 27.2 7.0 83 62-160 424-510 (876)
17 1vfg_A A-adding enzyme, poly A 23.2 23 0.00079 29.6 0.8 23 84-106 2-24 (390)
18 3la6_A Tyrosine-protein kinase 22.2 46 0.0016 26.4 2.4 22 97-118 14-35 (286)
19 4dbe_A Orotidine 5'-phosphate 21.7 1.2E+02 0.0041 23.3 4.6 84 41-124 80-170 (222)
20 3l6u_A ABC-type sugar transpor 21.5 1.9E+02 0.0066 21.5 5.8 63 56-122 32-99 (293)
21 3cpt_A Mitogen-activated prote 21.0 48 0.0016 24.4 2.0 13 149-161 41-53 (143)
22 2hi6_A UPF0107 protein AF0055; 20.9 1.3E+02 0.0045 21.8 4.4 81 61-162 48-133 (141)
23 3m9w_A D-xylose-binding peripl 20.9 1.7E+02 0.0057 22.3 5.4 39 84-122 50-93 (313)
24 3gfa_A Putative nitroreductase 20.9 39 0.0013 24.5 1.6 39 76-114 128-167 (198)
25 3gbv_A Putative LACI-family tr 20.8 1.1E+02 0.0037 23.0 4.3 37 85-121 62-103 (304)
26 3bm1_A Protein YDJA, nitroredu 20.3 39 0.0013 24.0 1.5 39 76-114 110-149 (183)
No 1
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Thermus thermophilus} SCOP: c.8.7.1
Probab=100.00 E-value=2.8e-53 Score=329.30 Aligned_cols=158 Identities=46% Similarity=0.776 Sum_probs=149.6
Q ss_pred CCchhhHhhhccCCccCCeeeeccccccccCCCeeEEEEEEEEEeecCcHHHHHHHhhcCCCcEEEEeCCCCCccceech
Q 031066 3 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGG 82 (166)
Q Consensus 3 ~~~t~~v~Da~~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~i~~~~~G~VlVvd~~g~~~~a~~G~ 82 (166)
+++|++|||+|+++ +.+.|.++++++.++++|+|+|+++.+||+.+++++++.+||+|||||+.++.++|+|||
T Consensus 2 ~~~t~~v~Da~~~~------~~~~~~~~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~a~~G~ 75 (164)
T 1j3l_A 2 EARTTDLSDLYPEG------EALPMVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGG 75 (164)
T ss_dssp CCCHHHHHHHCTTS------EEECSCSEECSSBSSEEEEEEEEECSSBCHHHHHHHTSCCBTEEEEEECTTCCSSBSCCH
T ss_pred cCCcccHhhccccc------CCCCcceeeCCCCCEEEEEEEEEEeeCCchHHHHHHhccCCCcEEEEECCCCCCceeehH
Confidence 58999999999973 456677888887889999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHcCCcEEEeeCccCCHHHHhcCCccEEEeeeecCCCCCccceeeeeeEEECCEEEccCCEEEEeCCceEEecC
Q 031066 83 NPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRA 162 (166)
Q Consensus 83 ~~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~~~~~~pV~igGv~V~pGD~i~aD~dGVvviP~ 162 (166)
+|+++|++|||+|+|+||++||++||++++|||||++++|.++.+...+++|+||+|+|++|+|||||+||.|||+|||+
T Consensus 76 ~la~~a~~~G~~GiVidG~vRD~~~i~~~~~pV~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~dGVvviP~ 155 (164)
T 1j3l_A 76 NLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLLLPE 155 (164)
T ss_dssp HHHHHHHHTTBCEEEEESEECCHHHHTTSSSEEEESEECSSBCBCSCCCEESCCEEETTEEECTTCEEEEETTEEEEESS
T ss_pred HHHHHHHHCCCeEEEecCcccCHHHHhcCCCcEEEeecCCCCCccceeeeeCCCEEECCEEECCCCEEEECCCeEEEECh
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred ccCC
Q 031066 163 ELSV 166 (166)
Q Consensus 163 ~l~~ 166 (166)
+|++
T Consensus 156 ~l~~ 159 (164)
T 1j3l_A 156 PPSG 159 (164)
T ss_dssp SCCC
T ss_pred hhcC
Confidence 9874
No 2
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E regulater, hydrolase regulator; HET: PGE PG4; 1.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4e-53 Score=327.89 Aligned_cols=157 Identities=51% Similarity=0.940 Sum_probs=149.0
Q ss_pred CCchhhHhhhcc-CCccCCeeeeccccccccCCCeeEEEEEEEEEeecCcHHHHHHHhhcCCCcEEEEeCCCCCccceec
Q 031066 3 LVTTAEVCDANP-QLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILG 81 (166)
Q Consensus 3 ~~~t~~v~Da~~-~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~i~~~~~G~VlVvd~~g~~~~a~~G 81 (166)
+++|++|||+|. ++ +.+.|.++++++.++++|+|+|+++.+||..+++++++.+||+|||||+.++.++|+||
T Consensus 2 ~~~t~~l~Da~~~~~------~~~~~~~~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~a~~G 75 (162)
T 3c8o_A 2 HYVTPDLCDAYPELV------QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLG 75 (162)
T ss_dssp CCCHHHHHHHCTTTC------EECCSCCEECSSCSCEEEEEEEEECSSCCHHHHHHHTSCCBTEEEEEECTTCSSSBSCC
T ss_pred cCChhhHHHhhhccc------CccCcccccCCCCCEEEEEEEEEEEeCCchHHHHHHhccCCCCEEEEECCCCCCccchH
Confidence 489999999997 43 45677888888889999999999999999999999999999999999999989999999
Q ss_pred hHHHHHHHHcCCcEEEeeCccCCHHHHhcCCccEEEeeeecCCCCCccceeeeeeEEECCEEEccCCEEEEeCCceEEec
Q 031066 82 GNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISR 161 (166)
Q Consensus 82 ~~~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~~~~~~pV~igGv~V~pGD~i~aD~dGVvviP 161 (166)
|+|+++|++|||+|+|+||++||++||++++|||||++++|.++.+...+++|+||+|+|++|+|||+|+||.|||+|||
T Consensus 76 ~~la~~a~~~G~~GiVidG~vRD~~~l~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~dGVvviP 155 (162)
T 3c8o_A 76 DMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSP 155 (162)
T ss_dssp HHHHHHHHHTTBCEEEEEEEECCHHHHTTSSSEEEEEEECCCBCCCCSCCEESCCEEETTEEECTTSEEEECSSCEEEES
T ss_pred HHHHHHHHHCCCeEEEecCCCCCHHHHhcCCCcEEEeecCCCCCcceeeeeeCCCEEECCEEECCCCEEEEcCCeEEEEC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CccC
Q 031066 162 AELS 165 (166)
Q Consensus 162 ~~l~ 165 (166)
++|+
T Consensus 156 ~~l~ 159 (162)
T 3c8o_A 156 QALK 159 (162)
T ss_dssp SCCC
T ss_pred cccc
Confidence 9986
No 3
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=100.00 E-value=9.1e-53 Score=325.63 Aligned_cols=157 Identities=42% Similarity=0.794 Sum_probs=147.2
Q ss_pred CCchhhHhhhcc-CCccCCeeeeccccccccCCCeeEEEEEEEEEeecCcHHHHHHHhhcCCCcEEEEeCCCCCccceec
Q 031066 3 LVTTAEVCDANP-QLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILG 81 (166)
Q Consensus 3 ~~~t~~v~Da~~-~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~i~~~~~G~VlVvd~~g~~~~a~~G 81 (166)
+++|++|||+|+ ++ +.+.|.++++++.++++|+|+|+++.+||..++++|++++||+|||||+.++.++|+||
T Consensus 2 ~~~ta~l~Dal~~~~------~~~~~~i~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~a~~G 75 (161)
T 1q5x_A 2 KYDTSELCDIYQEDV------NVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVD 75 (161)
T ss_dssp CCCHHHHHHHHGGGS------EECCSCCEECSSCSSEEEEEEEEECSSBCHHHHHHHTSCCTTEEEEEECTTCSSSEEEC
T ss_pred ccccccHhhhhhhcc------CCccCcceECCCCCEEEEEEEEEEEeCCcHHHHHHHhhcCCCCEEEEECCCCCCceeeh
Confidence 589999999998 43 23556667777778999999999999999999999999999999999999889999999
Q ss_pred hHHHHHHHHcCCcEEEeeCccCCHHHHhcCCccEEEeeeecCCCCCccceeeeeeEEECCEEEccCCEEEEeCCceEEec
Q 031066 82 GNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISR 161 (166)
Q Consensus 82 ~~~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~~~~~~pV~igGv~V~pGD~i~aD~dGVvviP 161 (166)
|+++++|++|||+|+|+||++||++||++++|||||++++|.++.+...+++|+||+|+|++|+|||+|+||.|||+|||
T Consensus 76 ~~la~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~dGVvviP 155 (161)
T 1q5x_A 76 AELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSE 155 (161)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECCHHHHTTSSSEEEEEEECSSBCBCSCCSEESCCEEETTEEECTTCEEEECSSCEEEES
T ss_pred HHHHHHHHHCCCeEEEecCccCCHHHHhcCCCcEEEeEeccCCCCcCceeeeCCCEEECCEEECCCCEEEEcCCeEEEEc
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CccC
Q 031066 162 AELS 165 (166)
Q Consensus 162 ~~l~ 165 (166)
++|.
T Consensus 156 ~~l~ 159 (161)
T 1q5x_A 156 DPLD 159 (161)
T ss_dssp SCSS
T ss_pred hHHc
Confidence 9985
No 4
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain; 1.90A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.1e-52 Score=325.07 Aligned_cols=157 Identities=45% Similarity=0.786 Sum_probs=148.3
Q ss_pred CchhhHhhhccCCccCCeeeeccccccccCCCeeEEEEEEEEEeecCcHHHHHHHhhcCCCcEEEEeCCCCCccceechH
Q 031066 4 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGN 83 (166)
Q Consensus 4 ~~t~~v~Da~~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~i~~~~~G~VlVvd~~g~~~~a~~G~~ 83 (166)
++|++|||+|.. ..+.+.|.++++++.++++|+|+|+++.+||..++++|++++||+|||||+.++.++|+|||+
T Consensus 1 ~~t~dl~Da~~~-----~~~~~~~~~~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~a~~G~~ 75 (161)
T 2pcn_A 1 MKTADLCDQFLD-----ELQVCELPFQSYGGKRMFSGPIATVDVFEDNVLVREALETVPPGTVLVVDGKGSRRVALLGDR 75 (161)
T ss_dssp CCHHHHHHHHGG-----GEEECCSCCEECSSCSCEEEEEEEEECSSBCHHHHHHHHHSCTTCEEEEECTTCCSSEEECHH
T ss_pred CCHHHHhhcccc-----ccCccCccceeCCCCCEEEEEEEEEEEecCchHHHHHHHhcCCCCEEEEECCCCCCceeehHH
Confidence 589999999973 245677888888888999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHcCCcEEEeeCccCCHHHHhcCCccEEEeeeecCCCCCccceeeeeeEEECCEEEccCCEEEEeCCceEEecCc
Q 031066 84 PVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAE 163 (166)
Q Consensus 84 ~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~~~~~~pV~igGv~V~pGD~i~aD~dGVvviP~~ 163 (166)
|+++|+++||+|+|+||++||++||++++|||||++++|.++.++..+++|+||+|+|++|+|||+|+||.|||||||++
T Consensus 76 la~~a~~~G~~GiVidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~dGVvviP~~ 155 (161)
T 2pcn_A 76 LAQIACERGLAGVIIHGCIRDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGGVRWEPGAYVYADADGVVVANKD 155 (161)
T ss_dssp HHHHHHHTTCCEEEEEEEESCHHHHTTSSSEEEEEEECCSCCBCSCCSEESCCEEETTEEECTTCEEEEETTEEEEESSC
T ss_pred HHHHHHHcCCcEEEecccccCHHHHhcCCCcEEEeecCCCCCccceeeeeCCCEEECCEEECCCCEEEECCCeEEEEChH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred cC
Q 031066 164 LS 165 (166)
Q Consensus 164 l~ 165 (166)
|.
T Consensus 156 l~ 157 (161)
T 2pcn_A 156 LL 157 (161)
T ss_dssp TT
T ss_pred Hh
Confidence 85
No 5
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics, unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Probab=100.00 E-value=1.5e-52 Score=327.82 Aligned_cols=158 Identities=36% Similarity=0.698 Sum_probs=149.7
Q ss_pred CCchhhHhhhccCCccCCeeeeccccccccCCCeeEEEEEEEEEeecCcHHHHHHHhhcCCCcEEEEeCCCCCccceech
Q 031066 3 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGG 82 (166)
Q Consensus 3 ~~~t~~v~Da~~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~i~~~~~G~VlVvd~~g~~~~a~~G~ 82 (166)
+++|++|||+|.+ . ++.+.|.++++++.++|+|+|+|+++.+||..++++|++.+||+|||||+.++.++|+|||
T Consensus 5 ~~~tadl~D~l~~-~----~~v~~~~~~~~~~~~~~~G~A~Tv~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~A~~G~ 79 (174)
T 1vi4_A 5 RDITPDLCDKYES-Q----VTLLNLPLQNFGQRSAFWGEIVTVRCYHDNSKVRDVLSQNGKGKVLVVDGHGSCHKALMGD 79 (174)
T ss_dssp CCCHHHHHHHSGG-G----CEECCCCCEECSSCSCEEEEEEEEECSSCCHHHHHHHTSCCTTEEEEEECTTCCSSEEECH
T ss_pred cccHHHHHHHhhc-c----cccccccceECCCCCEEEEEEEEEEEeCccHHHHHHHhccCCCEEEEEECCCCCCceehHH
Confidence 5899999999987 1 3557788888888889999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHcCCcEEEeeCccCCHHHHhcCCccEEEeeeecCCCCCccceeeeeeEEECCEEEccCCEEEEeCCceEEecC
Q 031066 83 NPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRA 162 (166)
Q Consensus 83 ~~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~~~~~~pV~igGv~V~pGD~i~aD~dGVvviP~ 162 (166)
+++++|++|||+|+|+||++||++||++++|||||++++|.++.+...+++|+||+|+|++|+|||||+||.|||||||+
T Consensus 80 ~la~~a~~~G~aGiVidG~vRD~~~l~~~~~pV~a~g~~p~~~~~~~~g~~nvpV~igGv~V~PGD~I~aD~dGVvviP~ 159 (174)
T 1vi4_A 80 QLAILAIKNDWEGVIIYGAVRDVVAMSEMDLGIKALGTSPFKTEKRGAGQVNVTLTMQNQIVEPGDYLYADWNGILMSET 159 (174)
T ss_dssp HHHHHHHHTTCCEEEEEEEECCHHHHTTSSSEEEEEEECSCCCCCCSCCEESCCEEETTEEECTTSEEEEETTEEEEESS
T ss_pred HHHHHHHHCCCeEEEeccccCCHHHHHhCCCCeEEeecCCCCCCCCCcceeCCCEEECCEEECCCCEEEEcCCeEEEECh
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred ccC
Q 031066 163 ELS 165 (166)
Q Consensus 163 ~l~ 165 (166)
+|.
T Consensus 160 ~l~ 162 (174)
T 1vi4_A 160 ALD 162 (174)
T ss_dssp CCC
T ss_pred HHc
Confidence 875
No 6
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone methyltransferase; beta/BETA/alpha domain, structural genomics, PSI; HET: TLA; 1.90A {Mycobacterium tuberculosis} SCOP: c.8.7.1
Probab=100.00 E-value=1.1e-50 Score=319.51 Aligned_cols=155 Identities=38% Similarity=0.761 Sum_probs=144.3
Q ss_pred CCCCchhhHhhhccCCccCCeeeeccccccccCCCeeEEEEEEEEEeecCcHHHHHHHhhcCCCcEEEEeCCCCCcccee
Q 031066 1 MALVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAIL 80 (166)
Q Consensus 1 ~~~~~t~~v~Da~~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~~~~~~~i~~~~~G~VlVvd~~g~~~~a~~ 80 (166)
|.+++|++|||+|.. .++.+.|.++++++.++++|+|+|+++.+||..+++++++++||+|||||+.++.++|+|
T Consensus 29 L~~~~t~dv~Dal~~-----~~~~~~~~i~~~~~~~~~~G~A~TV~~~~dn~~~~~al~~~~~G~VlVvd~~g~~~~A~~ 103 (183)
T 1nxj_A 29 ISFRPTADLVDDIGP-----DVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALV 103 (183)
T ss_dssp CCCCCHHHHHHHHCT-----TCEECCCCCEECSSBSCEEEEEEEEECSSBCHHHHHHHHSCCSSCEEEEECTTCCSSEEE
T ss_pred hcCCCHHHHHhhhhc-----ccCccCcceeECCCCCEEEEEEEEEEEeCCchHHHHHHHhcCCCCEEEEECCCCCCceee
Confidence 456899999999972 134466777778778899999999999999999999999999999999999998999999
Q ss_pred chHHHHHHHHcCCcEEEeeCccCCHHHHhcCCccEEEeeeecCCCCCccceeeeeeEEECCEEEccCCEEEEeCCceEEe
Q 031066 81 GGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 160 (166)
Q Consensus 81 G~~~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~~~~~~pV~igGv~V~pGD~i~aD~dGVvvi 160 (166)
||+++++|++|||+|+|+||++||++||++++|||||++++|.++.+..++++|+||+|+|++|+|||+|+||+||||||
T Consensus 104 G~~la~~a~~~G~aGiVidG~vRD~~ei~~l~fPV~a~g~~p~~~~~~~~g~~nvPV~igGv~V~PGD~I~aD~dGVVvI 183 (183)
T 1nxj_A 104 GDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 183 (183)
T ss_dssp CHHHHHHHHHHTCCEEEEEEEESCHHHHTTSSSEEEEEEECCSBCBCSCCSEESCCEEETTEEECTTSEEEECSSCEEEC
T ss_pred HHHHHHHHHHCCCcEEEeccccCCHHHHhcCCCcEEEeeeCCCCCCCCccceeCCCEEECCEEECCCCEEEECCCeEEEC
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999986
No 7
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase; class II aldolase, A-B-B-A sandwich, metalloprotein, lyase; HET: PG4; 1.82A {Pseudomonas putida}
Probab=100.00 E-value=8.9e-50 Score=325.74 Aligned_cols=157 Identities=24% Similarity=0.331 Sum_probs=145.1
Q ss_pred CCCchhhHhhhccCCccCCeeeeccccccccCCCeeEEEEEEEEEeec-CcHHHHHHHhhcCCCcEEEEeCCCCCcccee
Q 031066 2 ALVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFE-DNVLIREFLEEKGNGRVLVVDGGGSLRCAIL 80 (166)
Q Consensus 2 ~~~~t~~v~Da~~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~-d~~~~~~~i~~~~~G~VlVvd~~g~~~~a~~ 80 (166)
++++|++|||+|.+++ .+.|.++++.+.++++|+|+|+++.+ ||..+++++++++||||||||++++.++|+|
T Consensus 27 ~~~~tatv~dal~r~g------~~~~~i~p~~~~~~~~G~A~TV~~~p~dn~~~~~ai~~~~~G~VlVvd~~g~~~~A~~ 100 (238)
T 3noj_A 27 GRLGVATVHEAQNRKG------LLSSKMRPIQQGTSLAGSAVTVLVAPGDNWMFHVAVEQCRPGDVLVVSPSSPCTDGYF 100 (238)
T ss_dssp HHHCHHHHHHHTTSCC------BCCTTCEESSSSCCEEEEEEEEEECTTBCHHHHHHHTTCCTTEEEEEEESSCCCSBCC
T ss_pred hCCChhHHHHHhhccC------CCchhceECCCCCeEEEEEEEEEEECCCcHHHHHHHHhcCCCCEEEEECCCCCCeEeh
Confidence 4679999999998754 23455666666789999999999985 8999999999999999999999999999999
Q ss_pred chHHHHHHHHcCCcEEEeeCccCCHHHHhcCCccEEEeeeecCCCCCccceeeeeeEEECCEEEccCCEEEEeCCceEEe
Q 031066 81 GGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 160 (166)
Q Consensus 81 G~~~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~~~~~~~~pV~igGv~V~pGD~i~aD~dGVvvi 160 (166)
||+++++|+++||+|+|+||+|||+++|++++|||||+|++|.++.+...+++|+||+|+|++|+|||+|+||.||||||
T Consensus 101 G~~la~~a~~~G~aGiVidG~vRD~~~l~~~~fPV~a~g~~p~~~~k~~~g~invPV~igGv~V~PGD~V~aD~dGVvvi 180 (238)
T 3noj_A 101 GDLLATSLQARGVRALIVDAGVRDTQTLRDMGFAVWARAINAQGTVKETLGSVNLPVICGGQLINPGDIVVADDDGVVVV 180 (238)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEECCHHHHHHHTCEEEEEEECCCCCBCCSCCEESSCEEETTEEECTTCEEEEETTEEEEE
T ss_pred HHHHHHHHHHCCCcEEEeecccCCHHHHHhCCCCEEEeecCCCCCCCCCeeeeCCCEEECCEEECCCCEEEEcCCeEEEE
Confidence 99999999999999999999999999999999999999999998888789999999999999999999999999999999
Q ss_pred cCcc
Q 031066 161 RAEL 164 (166)
Q Consensus 161 P~~l 164 (166)
|+++
T Consensus 181 P~~~ 184 (238)
T 3noj_A 181 RRDE 184 (238)
T ss_dssp CGGG
T ss_pred cHHH
Confidence 9875
No 8
>3k4i_A Uncharacterized protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.69A {Pseudomonas syringae PV}
Probab=100.00 E-value=1.1e-48 Score=320.30 Aligned_cols=159 Identities=23% Similarity=0.337 Sum_probs=138.4
Q ss_pred CCCchhhHhhhccCCccCCeeeeccccccccCCCeeEEEEEEEEEeec-CcHHHH----HHHhhcCCCcEEEEeCCCCCc
Q 031066 2 ALVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFE-DNVLIR----EFLEEKGNGRVLVVDGGGSLR 76 (166)
Q Consensus 2 ~~~~t~~v~Da~~~~~~~g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~-d~~~~~----~~i~~~~~G~VlVvd~~g~~~ 76 (166)
++++|++|||+|+++++.+... .++++.+.++++|+|+||++.+ |+...+ ++|++++||||||||+.++.+
T Consensus 21 ~~~~ta~v~Dal~~~g~~~~~~----~i~p~~~~~~~~G~A~TV~~~p~d~~~~~~~~~~~id~~~~GdVlVvd~~g~~~ 96 (244)
T 3k4i_A 21 EHLDTASLSDALDSLGIDGGLP----GIASQVPGTRCVGIAFTVQYQPVDASEGFRGAANYIDQVPSGSVIVSSNSGRHD 96 (244)
T ss_dssp TTCCHHHHHHHHHHTTCCCBCT----TCEECSTTCCEEEEEEEEEEEEC----------CGGGGCCTTEEEEEECTTCSS
T ss_pred cCCChHHHHHHHHhcCCcccCc----cceECCCCCeEEEEEEEEEEecCCCchhhhhhHHHHHcCCCCeEEEEECCCCCC
Confidence 5799999999999977655443 4444555789999999999996 444444 359999999999999999999
Q ss_pred cceechHHHHHHHHcCCcEEEeeCccCCHHHHhcCCccEEEeeeecCCCCC-ccceeeeeeEEECCEEEccCCEEEEeCC
Q 031066 77 CAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANK-KGIGEKHVPITIGGTRISDGEWLYADTD 155 (166)
Q Consensus 77 ~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~-~~~~~~~~pV~igGv~V~pGD~i~aD~d 155 (166)
+|+|||+|+++|+++||+|+|+||+|||+++|++++|||||+|++|..+.. ..++++|+||+|+|++|+|||||+||.|
T Consensus 97 ~A~~G~lla~~a~~~G~aGvVidG~vRD~~ei~~~~fPV~a~g~~p~~~~~~~~~g~~nvPV~igGv~V~PGD~V~aD~d 176 (244)
T 3k4i_A 97 CTVWGDIMTHFALANGIKGTVIDGVARDIDTVINCNYPLFSRGRFMQSAKNRTQLKAVQVPLVIDGITIQPGDLMVCDGS 176 (244)
T ss_dssp SBSCCHHHHHHHHHHTCCEEEEESBBSCHHHHHHTTCCEEESCBCCCCSTTTEEEEEESSCEEETTEEECTTCEEEEETT
T ss_pred eEehHHHHHHHHHHCCCeEEEeCCccCCHHHHHhCCCCEEEeecCCCCCCCccccceecccEEECCEEECCCCEEEEcCC
Confidence 999999999999999999999999999999999999999999999986543 4789999999999999999999999999
Q ss_pred ceEEecCcc
Q 031066 156 GILISRAEL 164 (166)
Q Consensus 156 GVvviP~~l 164 (166)
||||||+++
T Consensus 177 GVVviP~~~ 185 (244)
T 3k4i_A 177 GCVVVPQQL 185 (244)
T ss_dssp EEEEECGGG
T ss_pred eEEEEcHHH
Confidence 999999876
No 9
>2c5q_A RRAA-like protein YER010C; structural genomics,unknown function, structural genomics, unknown function, pseudo-knot; HET: CME; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-48 Score=315.17 Aligned_cols=161 Identities=21% Similarity=0.208 Sum_probs=141.8
Q ss_pred CCCchhhHhhhccC-CccC--CeeeeccccccccCCCeeEEEEEEEEEeecCc-H-HHHHHHhhcCCCcEEEEeCCCCCc
Q 031066 2 ALVTTAEVCDANPQ-LIVS--GELRALQPIFQIYGRRQVFSGPIVTLKVFEDN-V-LIREFLEEKGNGRVLVVDGGGSLR 76 (166)
Q Consensus 2 ~~~~t~~v~Da~~~-~~~~--g~~~~l~p~~~~~~~~~~~~G~A~Tv~~~~d~-~-~~~~~i~~~~~G~VlVvd~~g~~~ 76 (166)
++++|++|||+|.+ ++.. ++...++|+.+ ++..+|+|+|+||++.+++ + ..+++|++++||+|||||+.++.+
T Consensus 8 ~~~~t~~v~Dal~~~~g~~~~~~~~~~~~~~~--g~~~~~~G~A~TV~~~~~~~~~~~~~aid~~~~G~VlVvd~~g~~~ 85 (240)
T 2c5q_A 8 QRFSTCDISDGLLNVYNIPTGGYFPNLTAISP--PQNSSIVGTAYTVLFAPIDDPRPAVNYIDSVPPNSILVLALEPHLQ 85 (240)
T ss_dssp TTSCHHHHHHHHHHHHCCTTTTEECSCEEEEC--CSSSCEEEEEEEEEEEETTSSSCCCCCGGGCCTTEEEEEEECGGGB
T ss_pred cCCCHHHHHHHHHHhhCcCccccCcceeECcc--CCCCEEEEEEEEEEEECCCCcHHHHHHHhcCCCCEEEEEECCCCcc
Confidence 57899999999998 6543 44455666432 2357899999999999755 3 245799999999999999988888
Q ss_pred ----------cceechHHHHHHHHcCCcEEEeeCccCCHHHHhcCCccEEEeeeecCCCCCc-cceeeeeeEEECC----
Q 031066 77 ----------CAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKK-GIGEKHVPITIGG---- 141 (166)
Q Consensus 77 ----------~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~~~~pv~a~g~~p~~~~~~-~~~~~~~pV~igG---- 141 (166)
+|+|||+|+++|+++||+|+|+||+|||++||++++|||||+|++|..+.+. .++++|+||+|+|
T Consensus 86 ~~~~~~~~~~~A~~G~l~a~~a~~~G~aGiVidG~vRD~~el~~l~~PV~a~g~~p~~~~~~~~~g~~nvPV~igG~~~~ 165 (240)
T 2c5q_A 86 SQFHPFIKITQAMYGGLMSTRAQYLKSNGTVVFGRIRDVDEHRTLNHPVFAYGVGSCAPKAVVKAVGTNVQLKILTSDGV 165 (240)
T ss_dssp CSSTTCBSCCSCSCCHHHHHHHHHTTCCEEEEEEEECCHHHHHHHTCCEEEEEECSSCSTTTEEEEEESCCEEEECTTSC
T ss_pred cccccccccceeeehHHHHHHHHHcCCeEEEecCCcCCHHHHhcCCCcEEEeecCCCCCCCcccccccCccEEECCcCcc
Confidence 9999999999999999999999999999999999999999999999888765 6999999999999
Q ss_pred -EEEccCCEEEEeCCceEEecC--cc
Q 031066 142 -TRISDGEWLYADTDGILISRA--EL 164 (166)
Q Consensus 142 -v~V~pGD~i~aD~dGVvviP~--~l 164 (166)
++|+|||||+||.|||||||+ ++
T Consensus 166 ~v~V~PGD~I~aD~dGVVviP~~~~~ 191 (240)
T 2c5q_A 166 TQTICPGDYIAGDNNGIVRIPVQETD 191 (240)
T ss_dssp EEEECTTCEEEEETTEEEEECTTTSC
T ss_pred eEEECCCCEEEEcCCcEEEeCCcHHH
Confidence 999999999999999999998 64
No 10
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=39.34 E-value=20 Score=27.84 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=32.9
Q ss_pred ccceechHHHHHHHHcCCcEEEeeCccCCHHHHhcC-CccEEEe
Q 031066 76 RCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGC-DIGVRAL 118 (166)
Q Consensus 76 ~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~~-~~pv~a~ 118 (166)
+....=..++.++.+.|+.|+-+ |...|+.++++. +.||+..
T Consensus 33 ~~~~~~~~~A~a~~~~Ga~~i~~-~~~~~i~~ir~~v~~Pvig~ 75 (229)
T 3q58_A 33 DKPEIVAAMAQAAASAGAVAVRI-EGIENLRTVRPHLSVPIIGI 75 (229)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEE-ESHHHHHHHGGGCCSCEEEE
T ss_pred CCcchHHHHHHHHHHCCCcEEEE-CCHHHHHHHHHhcCCCEEEE
Confidence 33444567888889999999998 467899999985 9999853
No 11
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=32.05 E-value=32 Score=26.68 Aligned_cols=41 Identities=7% Similarity=0.099 Sum_probs=32.3
Q ss_pred ccceechHHHHHHHHcCCcEEEeeCccCCHHHHhcC-CccEEE
Q 031066 76 RCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGC-DIGVRA 117 (166)
Q Consensus 76 ~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~~-~~pv~a 117 (166)
+...-=..++.++.+.|+.|+.+. ...|+.++++. +.||+.
T Consensus 33 ~~~~~~~~~A~a~~~~Ga~~i~~~-~~~~i~~ir~~v~~Pvig 74 (232)
T 3igs_A 33 DKPEIVAAMALAAEQAGAVAVRIE-GIDNLRMTRSLVSVPIIG 74 (232)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEE-SHHHHHHHHTTCCSCEEE
T ss_pred CCcchHHHHHHHHHHCCCeEEEEC-CHHHHHHHHHhcCCCEEE
Confidence 334445678888899999998884 57899999986 999975
No 12
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0
Probab=27.34 E-value=24 Score=27.47 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=33.1
Q ss_pred ccceechHHHHHHHHcCCcEEEeeCccCCHHHHhcC-Ccc
Q 031066 76 RCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGC-DIG 114 (166)
Q Consensus 76 ~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~~-~~p 114 (166)
++++...++..+|.+.|...+.+-|...|.++++++ ++|
T Consensus 113 dag~a~qnl~LaA~slGLgsc~ig~~~~~~~~v~~~L~lp 152 (249)
T 3n2s_A 113 DAALAAQNMSIAAESMGLGICYIGGIRNELDKVTEVLQTP 152 (249)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCCCEeeeccccccHHHHHHHhCcC
Confidence 567888999999999999999998887788888774 765
No 13
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Probab=27.25 E-value=28 Score=27.01 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=32.6
Q ss_pred ccceechHHHHHHHHcCCcEEEeeCccCCHHHHhc-CCcc
Q 031066 76 RCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEING-CDIG 114 (166)
Q Consensus 76 ~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~-~~~p 114 (166)
++++....+..+|.+.|.....+-|...|-+++++ +++|
T Consensus 113 dag~a~qnl~LaA~alGLgsc~ig~~~~~~~~v~~~L~lp 152 (255)
T 1zch_A 113 DAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELP 152 (255)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEGGGGSSHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCcEeeecccccCHHHHHHHhCcC
Confidence 57888899999999999999999877678888876 4765
No 14
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1
Probab=24.84 E-value=28 Score=26.69 Aligned_cols=39 Identities=15% Similarity=0.423 Sum_probs=32.4
Q ss_pred ccceechHHHHHHHHcCCcEEEeeCccCCHHHHhc-CCcc
Q 031066 76 RCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEING-CDIG 114 (166)
Q Consensus 76 ~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~-~~~p 114 (166)
++++..+.+..+|.+.|.....+-|...|-+++++ +++|
T Consensus 107 d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~v~~~L~lp 146 (240)
T 1f5v_A 107 DTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLP 146 (240)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEecccccCHHHHHHHhCCC
Confidence 57888899999999999999998887667778776 4665
No 15
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Probab=23.97 E-value=30 Score=26.53 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=32.1
Q ss_pred ccceechHHHHHHHHcCCcEEEeeCccCCHHHHhc-CCcc
Q 031066 76 RCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEING-CDIG 114 (166)
Q Consensus 76 ~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~-~~~p 114 (166)
++++..+.+..+|.+.|.....+-|...|-+++++ +++|
T Consensus 107 d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~v~~~L~lp 146 (240)
T 1bkj_A 107 DSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLP 146 (240)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccCHHHHHHHhCcC
Confidence 57888999999999999999998776557777776 4665
No 16
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=23.72 E-value=1.8e+02 Score=27.24 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=49.9
Q ss_pred CCCcEEEEeCCCCCccceechHHHHHHHHcCCcEEEeeCccCCHH---HHhcCCccEEEeeeecCCCCCccceeeeeeEE
Q 031066 62 GNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVD---EINGCDIGVRALASHPMKANKKGIGEKHVPIT 138 (166)
Q Consensus 62 ~~G~VlVvd~~g~~~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~---~i~~~~~pv~a~g~~p~~~~~~~~~~~~~pV~ 138 (166)
+.+.|||.+.-...+.. ...+ +.|+|++-.-+-+. --+++|+|.-.. ........-+..++
T Consensus 424 g~~~ILV~~~t~P~~~~---------~~~~-a~GivT~~GG~tSHaAIvAR~lGiP~VvG------~~~~~~~~~~~~~~ 487 (876)
T 1vbg_A 424 GKAAILVRAETSPEDVG---------GMHA-AVGILTERGGMTSHAAVVARGWGKCCVSG------CSGIRVNDAEKLVT 487 (876)
T ss_dssp TCCEEEEESCCCTTSHH---------HHHH-SSEEEESSCCTTSHHHHHHHHTTCCEEEC------CTTEEEEGGGTEEE
T ss_pred cCCEEEEEcCCCHHHHH---------hHhh-ccEEEECCCCCccHHHHHHhHcCCCEEEc------CCCceeccccceEE
Confidence 34448888754433321 1111 79999966655544 346689997432 11111222234456
Q ss_pred ECCEEEccCCEEEEeC-CceEEe
Q 031066 139 IGGTRISDGEWLYADT-DGILIS 160 (166)
Q Consensus 139 igGv~V~pGD~i~aD~-dGVvvi 160 (166)
+++..++.||+|.-|. .|.|.+
T Consensus 488 ~~~~~l~~G~~vtvDG~~G~V~~ 510 (876)
T 1vbg_A 488 IGGHVLREGEWLSLNGSTGEVIL 510 (876)
T ss_dssp ETTEEEETTCEEEEETTTTEEEE
T ss_pred eCCeeecCCCEEEEECCCCEEEE
Confidence 7888899999999997 687764
No 17
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=23.20 E-value=23 Score=29.65 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHHHHHcCCcEEEeeCccCCHH
Q 031066 84 PVVQAQNNGWAGIVVNGCIRDVD 106 (166)
Q Consensus 84 ~a~~a~~~G~~G~VidG~vRD~~ 106 (166)
++..++++|....++-|+|||.=
T Consensus 2 ~~~~~~~~g~~~y~VGG~VRD~l 24 (390)
T 1vfg_A 2 VGQIAKEMGLRAYIVGGVVRDIL 24 (390)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHH
T ss_pred hHHHHHHcCCeEEEEChHHHHHH
Confidence 46788999999999999999963
No 18
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=22.16 E-value=46 Score=26.37 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=17.7
Q ss_pred EeeCccCCHHHHhcCCccEEEe
Q 031066 97 VVNGCIRDVDEINGCDIGVRAL 118 (166)
Q Consensus 97 VidG~vRD~~~i~~~~~pv~a~ 118 (166)
-.+..+|+.++++++|+||++.
T Consensus 14 ~~~~~i~~~~~ie~~g~pvlg~ 35 (286)
T 3la6_A 14 LFNRGIESPQVLEEHGISVYAS 35 (286)
T ss_dssp ---CBCCCHHHHHTTTCCEEEE
T ss_pred hhcCCcCCHHHHHhCCCCeEEE
Confidence 4689999999999999999864
No 19
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=21.71 E-value=1.2e+02 Score=23.26 Aligned_cols=84 Identities=10% Similarity=0.031 Sum_probs=50.2
Q ss_pred EEEEEEeecC-cHHHHHHHhhcC--CCcEEEEeCCCCCcc-ceechHHHHHHHHcCCcEEEeeCc-cCCHHHHhcC--Cc
Q 031066 41 PIVTLKVFED-NVLIREFLEEKG--NGRVLVVDGGGSLRC-AILGGNPVVQAQNNGWAGIVVNGC-IRDVDEINGC--DI 113 (166)
Q Consensus 41 ~A~Tv~~~~d-~~~~~~~i~~~~--~G~VlVvd~~g~~~~-a~~G~~~a~~a~~~G~~G~VidG~-vRD~~~i~~~--~~ 113 (166)
.++||..... ...+..+++... ...|.|+..-+..+. ...-..++..|+..|+.|+|+-+. ..++..+++. +|
T Consensus 80 d~vTVh~~~G~~~~~~~a~~~~~~~~~~v~vLts~s~~~~~~~~~~~~a~~a~~~g~~GvV~sat~p~e~~~ir~~~~~~ 159 (222)
T 4dbe_A 80 NSFIAHSFIGVKGSLDELKRYLDANSKNLYLVAVMSHEGWSTLFADYIKNVIREISPKGIVVGGTKLDHITQYRRDFEKM 159 (222)
T ss_dssp SEEEEESTTCTTTTHHHHHHHHHHTTCEEEEEEECSSTTCCCTTHHHHHHHHHHHCCSEEEECTTCHHHHHHHHHHCTTC
T ss_pred CEEEEEcCcCcHHHHHHHHHHHHhcCCcEEEEEeCCCcchHHHHHHHHHHHHHHhCCCEEEECCCCHHHHHHHHHhCCCC
Confidence 7889987755 445555554331 124766643322211 223377889999999999998663 2345555542 47
Q ss_pred cEEEeeeecCC
Q 031066 114 GVRALASHPMK 124 (166)
Q Consensus 114 pv~a~g~~p~~ 124 (166)
...+-|..|.+
T Consensus 160 ~~vtPGI~~~g 170 (222)
T 4dbe_A 160 TIVSPGMGSQG 170 (222)
T ss_dssp EEEECCBSTTS
T ss_pred EEEcCCcccCc
Confidence 66677777653
No 20
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.49 E-value=1.9e+02 Score=21.48 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=37.9
Q ss_pred HHHhhcCCCcEEEEeCCCCCccceechHHHHHHHHcCCcEEEeeCccCC-----HHHHhcCCccEEEeeeec
Q 031066 56 EFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRD-----VDEINGCDIGVRALASHP 122 (166)
Q Consensus 56 ~~i~~~~~G~VlVvd~~g~~~~a~~G~~~a~~a~~~G~~G~VidG~vRD-----~~~i~~~~~pv~a~g~~p 122 (166)
++.++.+ =++++.+...+... . ......+..+++.|+|+.+.-.+ ++++.+.++|+...+..+
T Consensus 32 ~~a~~~g-~~~~~~~~~~~~~~--~-~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 99 (293)
T 3l6u_A 32 AEAKANK-YEALVATSQNSRIS--E-REQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMI 99 (293)
T ss_dssp HHHHHTT-CEEEEEECSSCHHH--H-HHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHcC-CEEEEECCCCCHHH--H-HHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCC
Confidence 4444443 24556555432211 0 13345566899999999887544 456667899998877543
No 21
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=21.03 E-value=48 Score=24.37 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=11.4
Q ss_pred EEEEeCCceEEec
Q 031066 149 WLYADTDGILISR 161 (166)
Q Consensus 149 ~i~aD~dGVvviP 161 (166)
+++.|.|||.++.
T Consensus 41 I~ItDrDGVpi~k 53 (143)
T 3cpt_A 41 IVVSDRDGVPVIK 53 (143)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEECCCCcEEEE
Confidence 6899999999875
No 22
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=20.91 E-value=1.3e+02 Score=21.81 Aligned_cols=81 Identities=17% Similarity=0.341 Sum_probs=43.1
Q ss_pred cCCCcEEEEeCCCCCccceechHHHHHHHHcCCc-EEEeeCccCCHHHHhcC--CccEEEe-eeecCCCCCccceeeeee
Q 031066 61 KGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWA-GIVVNGCIRDVDEINGC--DIGVRAL-ASHPMKANKKGIGEKHVP 136 (166)
Q Consensus 61 ~~~G~VlVvd~~g~~~~a~~G~~~a~~a~~~G~~-G~VidG~vRD~~~i~~~--~~pv~a~-g~~p~~~~~~~~~~~~~p 136 (166)
.=.|.|||+..+ +.++-|..+-..++.+|.+ ..++....-++-.+-.+ ++|+..+ ...+.
T Consensus 48 siagkILv~P~g---kGSt~gS~vl~~l~~~g~aPaAiI~~~~e~Il~~Gaiva~IP~vd~~~~d~~------------- 111 (141)
T 2hi6_A 48 SVAGRILVFPGG---KGSTVGSYVLLNLRKNGVAPKAIINKKTETIIAVGAAMAEIPLVEVRDEKFF------------- 111 (141)
T ss_dssp BCTTSEEEESCC---SCCSSCTTHHHHHHHHTCSCSEEEESSCCHHHHHHHHHHTCCEEECCCTHHH-------------
T ss_pred cccCeEEEecCC---CCccHHHHHHHHHHHCCCCCeEEEecCcchhhhhhhheeCCceEeccChhHH-------------
Confidence 447999999754 3344444444444444443 44554443333222222 5787532 11110
Q ss_pred EEECCEEEccCCEEEEe-CCceEEecC
Q 031066 137 ITIGGTRISDGEWLYAD-TDGILISRA 162 (166)
Q Consensus 137 V~igGv~V~pGD~i~aD-~dGVvviP~ 162 (166)
-.++.||+|--| ++|.+-+.+
T Consensus 112 -----~~i~~G~~v~vd~~~G~v~v~~ 133 (141)
T 2hi6_A 112 -----EAVKTGDRVVVNADEGYVELIE 133 (141)
T ss_dssp -----HHCCTTSEEEEETTTTEEEEEC
T ss_pred -----HHhcCCCEEEEeCCCCEEEEee
Confidence 123448999988 688887763
No 23
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.91 E-value=1.7e+02 Score=22.29 Aligned_cols=39 Identities=21% Similarity=0.095 Sum_probs=29.5
Q ss_pred HHHHHHHcCCcEEEeeCccCC-----HHHHhcCCccEEEeeeec
Q 031066 84 PVVQAQNNGWAGIVVNGCIRD-----VDEINGCDIGVRALASHP 122 (166)
Q Consensus 84 ~a~~a~~~G~~G~VidG~vRD-----~~~i~~~~~pv~a~g~~p 122 (166)
....+..+++.|+|+.+.-.+ ++++++.++|+...+..+
T Consensus 50 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 93 (313)
T 3m9w_A 50 QIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCC
T ss_pred HHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcC
Confidence 345667899999999987554 566777899998877643
No 24
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}
Probab=20.85 E-value=39 Score=24.48 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=32.5
Q ss_pred ccceechHHHHHHHHcCCcEEEeeCccCCHHHHhcC-Ccc
Q 031066 76 RCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGC-DIG 114 (166)
Q Consensus 76 ~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~~-~~p 114 (166)
++++..+++..+|.+.|.....+.+..-|-++++++ ++|
T Consensus 128 d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~v~~~l~lp 167 (198)
T 3gfa_A 128 SIGAAIQNMSLTAVELGLGSLWICDVYFAYRELCEWLNTD 167 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECGGGGGHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHCCCeeeeecCcccCcHHHHHHhCCC
Confidence 678888999999999999999997666777888773 665
No 25
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=20.84 E-value=1.1e+02 Score=22.97 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=28.1
Q ss_pred HHHHHHcCCcEEEeeCccCC-----HHHHhcCCccEEEeeee
Q 031066 85 VVQAQNNGWAGIVVNGCIRD-----VDEINGCDIGVRALASH 121 (166)
Q Consensus 85 a~~a~~~G~~G~VidG~vRD-----~~~i~~~~~pv~a~g~~ 121 (166)
...+..+++.|+|+.+.--+ ++++.+.++|+...+..
T Consensus 62 i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 103 (304)
T 3gbv_A 62 SQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQ 103 (304)
T ss_dssp HHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSC
T ss_pred HHHHHhcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34567899999999987543 55677779999887754
No 26
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A {Escherichia coli} PDB: 3bm2_A
Probab=20.30 E-value=39 Score=24.04 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=30.5
Q ss_pred ccceechHHHHHHHHcCCcEEEeeCccCCHHHHhc-CCcc
Q 031066 76 RCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEING-CDIG 114 (166)
Q Consensus 76 ~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~~i~~-~~~p 114 (166)
++++..+.+..+|.+.|.....+.|...+-+++++ +++|
T Consensus 110 d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp 149 (183)
T 3bm1_A 110 SAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCR 149 (183)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEECCGGGGCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCceEEeCCCCccCHHHHHHhCCC
Confidence 46778899999999999999999887655556665 4664
Done!