BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031070
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
Query: 33 QFLVPQNAARYALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNGPYGENIFWGSGNGW 92
+L N AR + + PM WD NLA AQ YAN R DC L HS GEN+ G G+ +
Sbjct: 6 DYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA--GENLAKGGGD-F 62
Query: 93 TPAQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGVFITC 152
T AV W+SE+ SY+Y +N C GG++C HYTQVV + R+GC + C G FI+C
Sbjct: 63 TGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGW-WFISC 121
Query: 153 NYDPPGNYIGERP 165
NYDP GN+IG+RP
Sbjct: 122 NYDPVGNWIGQRP 134
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 25/136 (18%)
Query: 44 ALRMRPMQWDPNLARYAQQYANKRRYDCELKHSN------------GPYGENIFWGSGNG 91
A M M WDP LA+ A+ +A+ +C+ H+ GENI+ GS
Sbjct: 37 ASDMLYMTWDPALAQIAKAWAS----NCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPI 92
Query: 92 WTPAQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCA-----KVTCFGG- 145
++ + A+ W E + YD+ + C + CGHYTQVV + + +VGCA KV+ F
Sbjct: 93 FSVSSAITNWYDEIQDYDFKTRICK--KVCGHYTQVVWADSYKVGCAVQFCPKVSGFDAL 150
Query: 146 -RGVFITCNYDPPGNY 160
G CNY P GNY
Sbjct: 151 SNGAHFICNYGPGGNY 166
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 44 ALRMRPMQWDPNLARYAQQYANKRRYDCELKHS------NGPYGENIFWGSGNG---WTP 94
A++M + WDP LA AQ++AN+ C +H G+NI S +G TP
Sbjct: 73 AVKMPNLTWDPELATIAQRWANQ----CTFEHDACRNVERFAVGQNIAATSSSGKNKSTP 128
Query: 95 AQAVMAWISEKKSYDY-WSNSCSGGQ----QCGHYTQVVRSRTRRVGCAKVTCFGGRG-- 147
+ ++ W +E K +D W +S + GHYTQ+V ++T ++GC ++
Sbjct: 129 NEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWT 188
Query: 148 -VFITCNYDPPGNYIGERPY 166
++ CNY P GN +G Y
Sbjct: 189 KHYLVCNYGPAGNVLGAPIY 208
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 33 QFLVPQNAARYALRMRPMQWDPNLARYAQQYANKRRYDCELKH----SNGPYGENIFWGS 88
+ L N R + P++ NL R AQQY+ LKH S G GEN+ W S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWAS 71
Query: 89 GNGWTPAQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGV 148
+ T + W SE K+Y++ + G GH+T +V T+++G K + G
Sbjct: 72 YD-QTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDGSS- 127
Query: 149 FITCNYDPPGNYIGE 163
F+ Y P GN + E
Sbjct: 128 FVVARYFPAGNVVNE 142
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 33 QFLVPQNAARYALRMRPMQWDPNLARYAQQYANKRRYDCELKH----SNGPYGENIFWGS 88
+ L N R + P++ NL R AQQY+ LKH S G GEN+ W S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS 71
Query: 89 GNGWTPAQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGV 148
+ T + W SE K+Y++ + G GH+T +V T+++G K + G
Sbjct: 72 YD-QTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDGSS- 127
Query: 149 FITCNYDPPGNYIGE 163
F+ Y P GN + E
Sbjct: 128 FVVARYFPAGNVVNE 142
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 44 ALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNGPY--------GENIFWGSGNGWTPA 95
A M M+W P A A+++AN C L HS GE+I+ S N T
Sbjct: 33 ASNMLKMEWYPEAASNAERWANT----CSLNHSPDNLRVLEGIQCGESIYMSS-NARTWT 87
Query: 96 QAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGR-GVFITCNY 154
+ + W E K++ Y + G GHYTQ+V +T R GCA C F C Y
Sbjct: 88 EIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQY 147
Query: 155 DPPGNYIGE 163
P GN+ G+
Sbjct: 148 CPSGNFQGK 156
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 44 ALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNGPY--------GENIFWGSGNGWTPA 95
A M M+W P A A+++AN C L HS GE+I+ S N T
Sbjct: 33 ASNMLKMEWYPEAASNAERWANT----CSLNHSPDNLRVLEGIQCGESIYMSS-NARTWT 87
Query: 96 QAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGR-GVFITCNY 154
+ + W E K++ Y + G GHYTQ+V +T R GCA C F C Y
Sbjct: 88 EIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQY 147
Query: 155 DPPGNYIGE 163
P GN+ G+
Sbjct: 148 CPSGNFQGK 156
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 44 ALRMRPMQWDPNLARYAQQYANKRRYDCELKHSN----GPYGENIFWGSGNGWTPA---- 95
A +M+ M +D + + A A + C KHS GENIF S +G A
Sbjct: 47 AAKMKTMAYDCEVEKTAMNNAKQ----CVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAE 102
Query: 96 QAVMAWISEKKSYDYWSN-SCSGG---QQCGHYTQVVRSRTRRVGCAKVTCFGGRGVFIT 151
QA AW E N +GG + GHYTQ+V T ++GC C ++
Sbjct: 103 QASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEAC--SNMCYVV 160
Query: 152 CNYDPPGNYIGERPY 166
C Y P GN +G+ Y
Sbjct: 161 CQYGPAGNMMGKDIY 175
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 44 ALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNGPY--------GENIFWGS-GNGWTP 94
A M M+W P A A+++A Y C HS+ GENI+ + WT
Sbjct: 33 ASNMLKMEWYPEAAANAERWA----YRCIESHSSRDSRVIGGIKCGENIYMATYPAKWT- 87
Query: 95 AQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGR-GVFITCN 153
+ AW E K + Y + GHYTQ+V ++ R GCA C + F C
Sbjct: 88 -DIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRAGCAAAYCPSSKYSYFYVCQ 146
Query: 154 YDPPGNYIGE 163
Y P GN IG+
Sbjct: 147 YCPAGNIIGK 156
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 19/144 (13%)
Query: 33 QFLVPQNAARYALR-----MRPMQWDPNLARYAQQYANKRRYDCELKHS--------NGP 79
+ + NA R +++ M M+W+ A+ A+++AN+ C HS
Sbjct: 9 EIVDKHNALRRSVKPTARNMLQMKWNSRAAQNAKRWANR----CTFAHSPPNKRTVGKLR 64
Query: 80 YGENIFWGSGNGWTPAQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAK 139
GENIF S + + V AW E K++ Y + G GHYTQVV ++ +GCA
Sbjct: 65 CGENIFMSS-QPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCAS 123
Query: 140 VTCFGGRGVFITCNYDPPGNYIGE 163
C + +++ C Y P GN G
Sbjct: 124 AKCSSSKYLYV-CQYCPAGNIRGS 146
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 33 QFLVPQNAARYALR-----MRPMQWDPNLARYAQQYANKRRYDCELKHS--------NGP 79
+ + NA R +++ M M+W+ + A+ A+++A++ C HS
Sbjct: 8 EIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADR----CTFAHSPPNTRTVGKLR 63
Query: 80 YGENIFWGSGNGWTPAQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAK 139
GENIF S + + V AW E K++ Y + G GHYTQVV ++ +GCA
Sbjct: 64 CGENIFMSS-QPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCAS 122
Query: 140 VTCFGGRGVFITCNYDPPGNYIGE 163
C + +++ C Y P GN G
Sbjct: 123 AKCSSSKYLYV-CQYCPAGNIRGS 145
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 44 ALRMRPMQWDPNLARYAQQYANKRRYDCELKHSN--------GPYGENIFWGS-GNGWTP 94
A M M+W P A A+++A Y C HS+ GENI+ WT
Sbjct: 33 ASNMLRMEWYPEAADNAERWA----YRCIESHSSYESRVIEGIKCGENIYMSPYPMKWT- 87
Query: 95 AQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGR-GVFITCN 153
+ AW E K + Y + GHYTQ+V ++ R+GCA C F C
Sbjct: 88 -DIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQ 146
Query: 154 YDPPGNYIGE 163
Y P GN+IG+
Sbjct: 147 YCPAGNFIGK 156
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 44 ALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNGPY--GENIFWGSGNGW---TPAQAV 98
A M+ + W+ LA AQ +AN+ +Y + Y G+N+ P + V
Sbjct: 76 AKNMKNLVWNDELAYVAQVWANQCQYGHDTCRDVAKYQVGQNVALTGSTAAKYDDPVKLV 135
Query: 99 MAWISEKKSYDYWSNSCSGGQ--QCGHYTQVVRSRTRRVGCAKVTCFGGR--GVFITCNY 154
W E K Y+ SG + GHYTQ+V + T+ VGC + + ++ CNY
Sbjct: 136 KMWEDEVKDYNP-KKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNY 194
Query: 155 DPPGNYIGERPY 166
P GN+ E Y
Sbjct: 195 GPSGNFKNEELY 206
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 41 ARYALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNGP----YGENIFWGS----GNGW 92
A A +M M +D + A ++ NK C +HS+G GENI+ S
Sbjct: 265 APKAAKMLKMVYDCEVEASAIRHGNK----CVYQHSHGEDRPGLGENIYKTSVLKFDKNK 320
Query: 93 TPAQAVMAWISEKKSYDYW-SNSCSGG------QQCGHYTQVVRSRTRRVGCAKVTCFGG 145
QA W +E K Y SN + Q GHYTQ+ T ++GCA V C
Sbjct: 321 AAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFC--N 378
Query: 146 RGVFITCNYDPPGNYIGERPY 166
F C Y P GNY+G Y
Sbjct: 379 DFTFGVCQYGPGGNYMGHVIY 399
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 116 SGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGVFITCNYDPP 157
SG G YT+ VR RR+G VT G RG +PP
Sbjct: 28 SGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPP 69
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 128 VRSRTRRVGCAKVTCFGGRGVFITCNYDPPGNYIG 162
V +R+G VT F GRG+ P G YIG
Sbjct: 242 VAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIG 276
>pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism
pdb|2QDD|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism
pdb|3FVD|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism Complexed With Magnesium
pdb|3FVD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism Complexed With Magnesium
Length = 378
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 79 PYGENIFWGSGNGWTPAQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVV 128
P G + + WTPA AV ++ ++ D+ C QC H + V
Sbjct: 188 PDGHRVTFDVNRAWTPAIAVEV-LNSVRARDWIEQPCQTLDQCAHVARRV 236
>pdb|4FNV|A Chain A, Crystal Structure Of Heparinase Iii
Length = 702
Score = 26.2 bits (56), Expect = 8.8, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 90 NGWTPAQAVMAWISEKKSYDYWSNSCSG 117
NGWTPA VM +S KS D SNS S
Sbjct: 436 NGWTPASTVMI-LSNNKSNDA-SNSLSA 461
>pdb|3E9S|A Chain A, A New Class Of Papain-Like ProteaseDEUBIQUITINASE
Inhibitors Blocks Sars Virus Replication
Length = 318
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 112 SNSCSGGQQCGHYTQVVRSRTR-RVGCAKVT 141
+N +G QCGHYT + T R+ A +T
Sbjct: 264 ANEYTGNYQCGHYTHITAKETLYRIDGAHLT 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,903,097
Number of Sequences: 62578
Number of extensions: 201175
Number of successful extensions: 390
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 24
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)