Query 031070
Match_columns 166
No_of_seqs 121 out of 1127
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 2.8E-42 6E-47 240.4 16.1 135 32-166 2-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 5.2E-38 1.1E-42 217.0 15.1 129 29-162 1-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 4.8E-37 1E-41 212.7 12.1 128 30-160 2-132 (132)
4 cd05385 SCP_GLIPR-1_like SCP_G 100.0 3.7E-35 8E-40 206.4 13.7 123 29-157 1-144 (144)
5 cd05383 SCP_CRISP SCP_CRISP: S 100.0 4.2E-35 9E-40 204.7 13.2 123 30-157 2-138 (138)
6 smart00198 SCP SCP / Tpx-1 / A 100.0 5.3E-35 1.2E-39 205.3 12.8 124 30-157 2-144 (144)
7 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 4.4E-34 9.6E-39 199.1 12.0 121 31-155 1-136 (136)
8 KOG3017 Defense-related protei 100.0 2E-33 4.4E-38 210.9 10.5 137 26-166 37-198 (225)
9 cd00168 SCP SCP: SCP-like extr 100.0 9.6E-33 2.1E-37 188.8 12.6 116 32-155 2-122 (122)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 6E-32 1.3E-36 189.2 10.6 121 31-155 1-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.9 2E-21 4.2E-26 130.3 10.0 116 35-154 1-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.8 3.9E-19 8.4E-24 122.4 12.6 106 29-154 3-125 (127)
13 cd05379 SCP_bacterial SCP_bact 99.7 7.3E-16 1.6E-20 104.4 11.1 103 32-154 2-121 (122)
14 COG2340 Uncharacterized protei 99.3 3.2E-11 6.8E-16 89.6 9.2 99 27-144 77-193 (207)
15 PF13956 Ibs_toxin: Toxin Ibs, 92.6 0.062 1.3E-06 23.6 0.8 10 1-10 1-10 (19)
16 PF08139 LPAM_1: Prokaryotic m 91.7 0.13 2.9E-06 24.7 1.5 18 1-18 6-23 (25)
17 PRK09810 entericidin A; Provis 91.0 0.27 5.8E-06 26.7 2.4 22 1-22 1-22 (41)
18 PRK10598 lipoprotein; Provisio 84.9 2 4.3E-05 31.4 4.4 47 2-48 1-49 (186)
19 TIGR03044 PS_II_psb27 photosys 80.8 5.3 0.00011 27.6 4.9 40 11-50 18-57 (135)
20 COG2143 Thioredoxin-related pr 79.7 3.5 7.6E-05 29.4 3.9 39 1-45 1-39 (182)
21 COG5510 Predicted small secret 77.0 3.3 7.1E-05 22.7 2.4 22 1-22 1-25 (44)
22 PF13605 DUF4141: Domain of un 76.6 5.4 0.00012 23.1 3.4 40 3-42 2-42 (55)
23 KOG0286 G-protein beta subunit 73.7 2.4 5.2E-05 33.3 1.9 34 126-161 79-112 (343)
24 PF11054 Surface_antigen: Spor 73.0 40 0.00086 25.8 8.9 132 30-166 34-218 (254)
25 PF11471 Sugarporin_N: Maltopo 70.9 14 0.0003 21.8 4.3 36 1-36 1-38 (60)
26 PRK10081 entericidin B membran 67.7 9.7 0.00021 21.4 3.0 10 1-10 1-10 (48)
27 COG3784 Uncharacterized protei 64.5 14 0.0003 24.2 3.6 18 27-44 48-65 (109)
28 PRK11627 hypothetical protein; 56.6 11 0.00023 27.8 2.4 20 1-20 1-20 (192)
29 PF12273 RCR: Chitin synthesis 52.8 27 0.00058 23.8 3.8 23 35-57 19-41 (130)
30 PF11912 DUF3430: Protein of u 51.7 12 0.00025 27.5 2.0 15 2-16 1-15 (212)
31 PRK10449 heat-inducible protei 49.8 16 0.00034 25.3 2.3 20 2-21 1-20 (140)
32 PF06291 Lambda_Bor: Bor prote 48.2 13 0.00027 24.3 1.5 20 2-22 1-20 (97)
33 PHA03302 envelope glycoprotein 47.3 29 0.00062 26.5 3.4 32 1-32 1-32 (253)
34 PF03032 Brevenin: Brevenin/es 47.2 14 0.0003 20.5 1.4 16 2-17 3-18 (46)
35 PRK13883 conjugal transfer pro 46.9 20 0.00044 25.3 2.5 21 2-22 1-21 (151)
36 PF11153 DUF2931: Protein of u 46.3 17 0.00037 27.0 2.2 20 2-22 1-20 (216)
37 KOG4439 RNA polymerase II tran 42.9 29 0.00063 30.9 3.2 42 27-68 781-844 (901)
38 TIGR02052 MerP mercuric transp 42.0 21 0.00046 21.3 1.9 20 2-21 1-20 (92)
39 PF04648 MF_alpha: Yeast matin 42.0 14 0.00031 14.7 0.7 6 161-166 8-13 (13)
40 PRK12618 flgA flagellar basal 36.6 17 0.00038 25.2 0.9 9 1-9 1-9 (141)
41 PRK11443 lipoprotein; Provisio 36.0 33 0.00071 23.4 2.1 51 50-104 61-113 (124)
42 PRK10053 hypothetical protein; 35.7 31 0.00068 23.7 2.0 13 2-14 1-13 (130)
43 PRK13859 type IV secretion sys 35.6 31 0.00068 19.6 1.6 8 2-9 1-8 (55)
44 PF11839 DUF3359: Protein of u 35.5 1.2E+02 0.0027 19.7 4.6 20 2-21 1-21 (96)
45 TIGR03516 ppisom_GldI peptidyl 35.0 34 0.00073 24.8 2.2 24 2-25 1-24 (177)
46 PRK15324 type III secretion sy 32.9 81 0.0018 24.3 4.1 40 1-40 1-41 (252)
47 COG3909 Cytochrome c556 [Energ 32.8 1.2E+02 0.0026 21.2 4.4 59 1-59 1-62 (147)
48 TIGR02743 TraW type-F conjugat 32.6 1.6E+02 0.0034 21.9 5.4 31 30-66 33-63 (202)
49 PF11777 DUF3316: Protein of u 31.9 43 0.00094 22.2 2.2 8 2-9 1-8 (114)
50 PRK10002 outer membrane protei 31.3 36 0.00079 27.4 2.1 21 1-21 1-22 (362)
51 PRK14762 membrane protein; Pro 30.3 52 0.0011 15.7 1.7 9 2-10 1-9 (27)
52 PF11106 YjbE: Exopolysacchari 29.9 55 0.0012 20.3 2.2 9 2-10 1-9 (80)
53 PF00879 Defensin_propep: Defe 28.7 81 0.0018 18.0 2.6 13 2-14 1-13 (52)
54 PF07438 DUF1514: Protein of u 28.3 1.4E+02 0.003 17.9 3.9 15 8-22 8-22 (66)
55 PRK00442 tatA twin arginine tr 28.1 1.6E+02 0.0034 19.0 4.1 33 6-44 10-42 (92)
56 COG3417 FlgN Collagen-binding 27.9 47 0.001 24.5 1.9 20 1-20 3-22 (200)
57 PF15240 Pro-rich: Proline-ric 27.7 44 0.00095 24.3 1.7 9 13-22 9-17 (179)
58 PF10717 ODV-E18: Occlusion-de 27.6 67 0.0014 20.3 2.3 6 11-16 37-42 (85)
59 PRK10523 lipoprotein involved 27.3 60 0.0013 24.7 2.5 15 1-15 1-15 (234)
60 TIGR00156 conserved hypothetic 27.2 52 0.0011 22.5 1.9 10 2-11 1-10 (126)
61 PF10731 Anophelin: Thrombin i 27.2 79 0.0017 18.6 2.4 15 8-22 10-24 (65)
62 PRK11289 ampC beta-lactamase/D 26.6 1.8E+02 0.0039 23.7 5.3 20 27-46 28-47 (384)
63 PRK13792 lysozyme inhibitor; P 26.5 61 0.0013 22.2 2.2 21 2-22 1-21 (127)
64 PF06286 Coleoptericin: Coleop 26.4 23 0.00049 24.1 0.1 10 1-10 1-10 (143)
65 PF05643 DUF799: Putative bact 26.3 57 0.0012 24.5 2.2 18 2-19 1-18 (215)
66 COG4287 PqaA PhoPQ-activated p 26.2 63 0.0014 26.7 2.5 45 1-46 21-72 (507)
67 PF03866 HAP: Hydrophobic abun 25.8 70 0.0015 22.1 2.3 15 1-15 1-15 (164)
68 PF13677 MotB_plug: Membrane M 25.6 1.4E+02 0.0031 17.1 3.6 10 13-22 31-40 (58)
69 PF10883 DUF2681: Protein of u 25.5 75 0.0016 20.2 2.3 16 1-16 1-16 (87)
70 COG5294 Uncharacterized protei 25.5 63 0.0014 21.6 2.0 9 2-10 1-9 (113)
71 PRK02958 tatA twin arginine tr 25.2 1.7E+02 0.0037 17.9 4.1 31 8-44 12-42 (73)
72 PF11336 DUF3138: Protein of u 24.6 1.2E+02 0.0025 25.5 3.8 13 53-65 82-94 (514)
73 PF03207 OspD: Borrelia outer 23.4 2.5E+02 0.0055 20.2 4.9 20 27-46 49-68 (254)
74 PRK11671 mltC murein transglyc 23.4 70 0.0015 26.0 2.3 17 2-18 1-17 (359)
75 PRK10626 hypothetical protein; 23.2 2.8E+02 0.0061 21.2 5.4 20 27-46 66-85 (239)
76 TIGR02744 TrbI_Ftype type-F co 23.0 2.1E+02 0.0045 19.2 4.2 14 27-40 56-69 (112)
77 PRK14389 hypothetical protein; 23.0 1E+02 0.0022 20.2 2.6 44 1-44 1-48 (98)
78 PRK14858 tatA twin arginine tr 22.6 1.8E+02 0.0038 19.4 3.7 6 11-16 15-20 (108)
79 PRK00720 tatA twin arginine tr 22.6 2E+02 0.0044 17.9 4.2 17 29-45 27-43 (78)
80 PRK11546 zraP zinc resistance 22.5 2.6E+02 0.0056 19.6 4.7 19 26-44 44-62 (143)
81 PRK02898 cobalt transport prot 22.4 2.1E+02 0.0046 18.7 4.0 11 27-37 36-46 (100)
82 PRK03554 tatA twin arginine tr 22.2 76 0.0016 20.3 1.8 32 6-43 10-41 (89)
83 PF14060 DUF4252: Domain of un 22.1 1.5E+02 0.0032 20.4 3.6 28 36-63 26-53 (155)
84 PRK00575 tatA twin arginine tr 21.8 2.1E+02 0.0046 18.4 3.8 17 29-45 27-43 (92)
85 PF03295 Pox_TAA1: Poxvirus tr 21.5 72 0.0016 18.8 1.5 19 29-47 24-42 (63)
86 PRK11372 lysozyme inhibitor; P 21.4 80 0.0017 20.9 1.9 17 2-19 3-19 (109)
87 PRK01833 tatA twin arginine tr 21.4 2.1E+02 0.0046 17.6 4.1 33 8-46 12-44 (74)
88 PF04863 EGF_alliinase: Alliin 21.3 1.1E+02 0.0023 17.7 2.2 15 50-64 1-15 (56)
89 PRK13861 type IV secretion sys 21.3 65 0.0014 25.3 1.7 15 1-15 1-15 (292)
90 PRK00191 tatA twin arginine tr 21.1 2.3E+02 0.005 17.9 4.0 18 29-46 26-43 (84)
91 PF11873 DUF3393: Domain of un 20.4 1.1E+02 0.0025 22.7 2.8 17 2-19 1-17 (204)
92 PRK09838 periplasmic copper-bi 20.1 98 0.0021 20.7 2.2 21 2-22 1-21 (115)
93 PF03823 Neurokinin_B: Neuroki 20.1 92 0.002 18.1 1.7 16 2-17 1-17 (59)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=2.8e-42 Score=240.40 Aligned_cols=135 Identities=66% Similarity=1.256 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhcCCccccCCCCccceEEeccCCCCCHHHHHHHHHhhhccCCcC
Q 031070 32 NQFLVPQNAARYALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNGPYGENIFWGSGNGWTPAQAVMAWISEKKSYDYW 111 (166)
Q Consensus 32 ~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~Gen~~~~~~~~~~~~~~v~~W~~e~~~y~~~ 111 (166)
+.||+.||.+|+.++|++|+||++|++.||.||++++..|...|+.+.+|||+++.......+.++|+.|++|...|++.
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~~ 81 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDYD 81 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCCC
Confidence 58999999999999999999999999999999988888899988887899999987744567899999999999999998
Q ss_pred CCCCCCCcccchHHHHHHhcCCeEEEEEEEeCCCCeEEEEEEecCCCCCCCCCCC
Q 031070 112 SNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGVFITCNYDPPGNYIGERPY 166 (166)
Q Consensus 112 ~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~~~~~~vC~Y~p~gn~~g~~~Y 166 (166)
.+.+..+..++|||||||+++++||||++.|.++...++||+|+|+||+.|++||
T Consensus 82 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 82 SNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCcCCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 8877766789999999999999999999999874358999999999999999998
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=5.2e-38 Score=216.98 Aligned_cols=129 Identities=43% Similarity=0.747 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhcCCccccCCCCccceEEeccCCCCCHHHHHHHHHhhhccC
Q 031070 29 SLANQFLVPQNAARYALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNGPYGENIFWGSGNGWTPAQAVMAWISEKKSY 108 (166)
Q Consensus 29 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~Gen~~~~~~~~~~~~~~v~~W~~e~~~y 108 (166)
++++.||+.||.+|+.++++||+||++|++.||.||.+++..|...|++..+|||++... .++.++++.|++|...|
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~---~~~~~~v~~W~~e~~~y 77 (129)
T cd05384 1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGY---PSGTSAVDAWYDEIEDY 77 (129)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEec---CCHHHHHHHHHhhhhhC
Confidence 368999999999999999999999999999999999777666668888888999998765 36889999999999999
Q ss_pred CcCCCCCCCCcccchHHHHHHhcCCeEEEEEEEeCCCCeEEEEEEecCCCCCCC
Q 031070 109 DYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGVFITCNYDPPGNYIG 162 (166)
Q Consensus 109 ~~~~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~~~~~~vC~Y~p~gn~~g 162 (166)
++..+.. +..++||+||||+++++||||++.|+.....++||+|+|+||+.|
T Consensus 78 ~~~~~~~--~~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 78 DYSNPGF--SEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred CCCCCCC--CCcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 9977543 346899999999999999999999987435889999999999876
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=4.8e-37 Score=212.73 Aligned_cols=128 Identities=32% Similarity=0.520 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhcCCccccCCC-CccceEEeccC--CCCCHHHHHHHHHhhhc
Q 031070 30 LANQFLVPQNAARYALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNG-PYGENIFWGSG--NGWTPAQAVMAWISEKK 106 (166)
Q Consensus 30 ~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-~~Gen~~~~~~--~~~~~~~~v~~W~~e~~ 106 (166)
+++.||+.||.+|+.++|+||+||++|+..||.||++|+..+.+.|+.+ .+|||++.... ....+.++|+.|++|..
T Consensus 2 ~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~~ 81 (132)
T cd05382 2 FQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEIK 81 (132)
T ss_pred HHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhccc
Confidence 6899999999999999999999999999999999977776666777765 59999998873 46688999999999999
Q ss_pred cCCcCCCCCCCCcccchHHHHHHhcCCeEEEEEEEeCCCCeEEEEEEecCCCCC
Q 031070 107 SYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGVFITCNYDPPGNY 160 (166)
Q Consensus 107 ~y~~~~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~~~~~~vC~Y~p~gn~ 160 (166)
.|++..+.. +..++||+||||+++++||||++.|+.+ ..++||+|+|+||+
T Consensus 82 ~y~~~~~~~--~~~~gh~tqmvw~~t~~vGCa~~~~~~~-~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 82 KYDFNKPGF--SSKTGHFTQVVWKSSTELGVGVAKSKKG-CVYVVARYRPAGNV 132 (132)
T ss_pred cCCCCCCCC--CCCCCCeEEeEecCCCceeeEEEEcCCC-CEEEEEEEeCCCCC
Confidence 999875443 3469999999999999999999999864 58999999999985
No 4
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=3.7e-35 Score=206.38 Aligned_cols=123 Identities=40% Similarity=0.724 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHhhhcCCccccCC------------CCccceEEeccCCC
Q 031070 29 SLANQFLVPQNAARYALR-----MRPMQWDPNLARYAQQYANKRRYDCELKHSN------------GPYGENIFWGSGNG 91 (166)
Q Consensus 29 ~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~------------~~~Gen~~~~~~~~ 91 (166)
+++++||+.||.+|+++. |.+|+||++|++.||.|| ++|...|++ ..+|||++....+.
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a----~~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~ 76 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWA----KKCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI 76 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHH----hcCCCCCCchhhcccccccccCcccceeeecccCC
Confidence 478999999999999994 899999999999999999 889887764 25899998876555
Q ss_pred CCHHHHHHHHHhhhccCCcCCCCCCCCcccchHHHHHHhcCCeEEEEEEEeCCC----CeEEEEEEecCC
Q 031070 92 WTPAQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGG----RGVFITCNYDPP 157 (166)
Q Consensus 92 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~----~~~~~vC~Y~p~ 157 (166)
..+.++++.|++|..+|+|..+.+. ..++|||||||+++++||||++.|+.+ ...++||+|+|+
T Consensus 77 ~~~~~av~~W~~e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 77 FSPKNAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 6889999999999999999877654 369999999999999999999999875 246899999984
No 5
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=4.2e-35 Score=204.74 Aligned_cols=123 Identities=32% Similarity=0.575 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHhhhcCCccccCCC--------CccceEEeccCCCCCHHH
Q 031070 30 LANQFLVPQNAARYALR-----MRPMQWDPNLARYAQQYANKRRYDCELKHSNG--------PYGENIFWGSGNGWTPAQ 96 (166)
Q Consensus 30 ~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~--------~~Gen~~~~~~~~~~~~~ 96 (166)
.|+.||+.||.+|+.+. |.+|+||++||..||.|| ++|...|++. .+|||++... ....+.+
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a----~~C~~~~~~~~~~~~~~~~~GeNl~~~~-~~~~~~~ 76 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWA----NTCNLTHSPPNGRTIGGITCGENIFMSS-YPRSWSD 76 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHH----hcCCCcCCchhhcccCCCCcceeeeccC-CCCCHHH
Confidence 47899999999999985 678999999999999999 9998878752 4799999776 3457889
Q ss_pred HHHHHHhhhccCCcCCCCCCCCcccchHHHHHHhcCCeEEEEEEEeCCC-CeEEEEEEecCC
Q 031070 97 AVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGG-RGVFITCNYDPP 157 (166)
Q Consensus 97 ~v~~W~~e~~~y~~~~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~-~~~~~vC~Y~p~ 157 (166)
+|+.|++|...|+|+.+.+..+..++|||||||+++++||||++.|..+ ...++||+|+|+
T Consensus 77 av~~W~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 77 VIQAWYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 9999999999999988776667789999999999999999999999875 358899999985
No 6
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00 E-value=5.3e-35 Score=205.26 Aligned_cols=124 Identities=39% Similarity=0.703 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhhCC-----------CCCCcccHHHHHHHHHHHHhhhcCCccccCCC-CccceEEeccC----CCCC
Q 031070 30 LANQFLVPQNAARYALR-----------MRPMQWDPNLARYAQQYANKRRYDCELKHSNG-PYGENIFWGSG----NGWT 93 (166)
Q Consensus 30 ~~~~il~~hN~~R~~~~-----------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-~~Gen~~~~~~----~~~~ 93 (166)
+|+.||+.||.+|+.++ |++|+||++||..|+.|| +.|...|+.. .+|||+++... ....
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a----~~C~~~~~~~~~~GeNi~~~~~~~~~~~~~ 77 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWA----NQCPFGHSTPRGYGENLAWWSSSTDLPITY 77 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHH----HhCCCcCCCcCCcCcceEEecccCcccchh
Confidence 58899999999999999 999999999999999999 8998888763 78999998763 3457
Q ss_pred HHHHHHHHHhhhccCCcCCCCCCC-CcccchHHHHHHhcCCeEEEEEEEeCCC--CeEEEEEEecCC
Q 031070 94 PAQAVMAWISEKKSYDYWSNSCSG-GQQCGHYTQVVRSRTRRVGCAKVTCFGG--RGVFITCNYDPP 157 (166)
Q Consensus 94 ~~~~v~~W~~e~~~y~~~~~~~~~-~~~~~~f~qmiw~~~~~vGCa~~~c~~~--~~~~~vC~Y~p~ 157 (166)
+.++|+.|++|...|++..+.+.. +..++|||||||+++++||||++.|.++ ...++||+|+|+
T Consensus 78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 889999999999999998877664 5679999999999999999999999886 236999999985
No 7
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=4.4e-34 Score=199.09 Aligned_cols=121 Identities=35% Similarity=0.667 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHhhhcCCccccCCC----CccceEEeccCCCCCHHHHHHHH
Q 031070 31 ANQFLVPQNAARYALR-----MRPMQWDPNLARYAQQYANKRRYDCELKHSNG----PYGENIFWGSGNGWTPAQAVMAW 101 (166)
Q Consensus 31 ~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~----~~Gen~~~~~~~~~~~~~~v~~W 101 (166)
|+.||+.||.+|+.++ |.+|+||++||..||.|| ++|...|++. .+|||++...++...+.++++.|
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a----~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W 76 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYA----RKCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW 76 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHH----HhccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence 4689999999999986 778999999999999999 8998888662 68999998775566799999999
Q ss_pred HhhhccCCcCCCCCCCCcccchHHHHHHhcCCeEEEEEEEeCCC------CeEEEEEEec
Q 031070 102 ISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGG------RGVFITCNYD 155 (166)
Q Consensus 102 ~~e~~~y~~~~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~------~~~~~vC~Y~ 155 (166)
++|...|+|..+.+..+..++||+||||+++++||||++.|++. ...++||+|+
T Consensus 77 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 77 NNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HHHHHhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 99999999988877777789999999999999999999999753 2478999995
No 8
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=100.00 E-value=2e-33 Score=210.85 Aligned_cols=137 Identities=46% Similarity=0.818 Sum_probs=119.8
Q ss_pred CChHHHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHhhhcCCccccC------CCCccceEEeccCCC---
Q 031070 26 NYWSLANQFLVPQNAARYALR-----MRPMQWDPNLARYAQQYANKRRYDCELKHS------NGPYGENIFWGSGNG--- 91 (166)
Q Consensus 26 ~~~~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~------~~~~Gen~~~~~~~~--- 91 (166)
...+++++|++.||.+|..+. |.+|+||++||..||.|| ++|...|+ ...+|||++++....
T Consensus 37 ~~~~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a----~~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~ 112 (225)
T KOG3017|consen 37 AHNNLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWA----NTCPFGHDKCVHTSFGPYGENLAWGWSSNPPL 112 (225)
T ss_pred hcHHHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHH----hhCCcccCccccccCCCCcccceeeccCCCCc
Confidence 456899999999999999999 999999999999999999 88887666 357799999887431
Q ss_pred ---CCHHHHHHHHHhhhccCCcCCCCCCC---CcccchHHHHHHhcCCeEEEEEEEeCCCC----eEEEEEEecCCCCCC
Q 031070 92 ---WTPAQAVMAWISEKKSYDYWSNSCSG---GQQCGHYTQVVRSRTRRVGCAKVTCFGGR----GVFITCNYDPPGNYI 161 (166)
Q Consensus 92 ---~~~~~~v~~W~~e~~~y~~~~~~~~~---~~~~~~f~qmiw~~~~~vGCa~~~c~~~~----~~~~vC~Y~p~gn~~ 161 (166)
.....+++.|+.|...|++..+.+.. +..++|||||||+++++||||++.|.++. ..++||+|+|+||..
T Consensus 113 ~~~~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~ 192 (225)
T KOG3017|consen 113 SLDTSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNI 192 (225)
T ss_pred cccccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCc
Confidence 46777999999999999999998875 67899999999999999999999999874 689999999996555
Q ss_pred C-CCCC
Q 031070 162 G-ERPY 166 (166)
Q Consensus 162 g-~~~Y 166 (166)
+ +.+|
T Consensus 193 ~~~~~y 198 (225)
T KOG3017|consen 193 NGEIPY 198 (225)
T ss_pred CCCCcC
Confidence 5 5665
No 9
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=100.00 E-value=9.6e-33 Score=188.81 Aligned_cols=116 Identities=38% Similarity=0.649 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhhC-CCCCCcccHHHHHHHHHHHHhhhcCCccccCCC----CccceEEeccCCCCCHHHHHHHHHhhhc
Q 031070 32 NQFLVPQNAARYAL-RMRPMQWDPNLARYAQQYANKRRYDCELKHSNG----PYGENIFWGSGNGWTPAQAVMAWISEKK 106 (166)
Q Consensus 32 ~~il~~hN~~R~~~-~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~----~~Gen~~~~~~~~~~~~~~v~~W~~e~~ 106 (166)
+.||+.||.+|+.+ +|+||+||++|+..||.|| ++|...|++. .+|||++....+ .++.++++.|++|..
T Consensus 2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a----~~c~~~h~~~~~~~~~geNi~~~~~~-~~~~~~v~~W~~e~~ 76 (122)
T cd00168 2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYA----NRCIFKHSGEDGRGFVGENLAAGSYD-MTGPAAVQAWYNEIK 76 (122)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHH----hhccccCCCcccCCCCCceeEEecCC-CCHHHHHHHHHHHHH
Confidence 57999999999999 9999999999999999999 8998888764 689999988733 689999999999999
Q ss_pred cCCcCCCCCCCCcccchHHHHHHhcCCeEEEEEEEeCCCCeEEEEEEec
Q 031070 107 SYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGVFITCNYD 155 (166)
Q Consensus 107 ~y~~~~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~~~~~~vC~Y~ 155 (166)
.|+|..+.. +..++||+||||+++++||||++.|+++ ..++||+|+
T Consensus 77 ~y~~~~~~~--~~~~~h~~qmvw~~s~~vGca~~~~~~~-~~~~vC~Y~ 122 (122)
T cd00168 77 NYNFGQPGF--SSGTGHYTQVVWKNTTKIGCGVAFCGSN-SYYVVCNYG 122 (122)
T ss_pred hCCCCCCCC--CCCccchhhhhcccCCeeeeEEEEcCCC-CEEEEEeCc
Confidence 999985443 3568999999999999999999999864 589999995
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.97 E-value=6e-32 Score=189.22 Aligned_cols=121 Identities=34% Similarity=0.565 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhhC------------CCCCCcccHHHHHHHHHHHHhhhcCCccccCCC----CccceEEeccCC----
Q 031070 31 ANQFLVPQNAARYAL------------RMRPMQWDPNLARYAQQYANKRRYDCELKHSNG----PYGENIFWGSGN---- 90 (166)
Q Consensus 31 ~~~il~~hN~~R~~~------------~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~----~~Gen~~~~~~~---- 90 (166)
++.||+.||.+|+.+ .|.+|+||++||+.|+.|| ++|...|+.. .+|||++.....
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a----~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~ 76 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWA----KTCVFEHSPCRNTGGVGQNLAAGSSTGSTV 76 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHH----hcCCCcCCcccCCCCCCcEEEEeccCCCCH
Confidence 468999999999999 6999999999999999999 9998778764 689999988733
Q ss_pred CCCHHHHHHHHHhhhccCCcCCC-CCCCCcccchHHHHHHhcCCeEEEEEEEeCCC--CeEEEEEEec
Q 031070 91 GWTPAQAVMAWISEKKSYDYWSN-SCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGG--RGVFITCNYD 155 (166)
Q Consensus 91 ~~~~~~~v~~W~~e~~~y~~~~~-~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~--~~~~~vC~Y~ 155 (166)
...+.++|+.|++|...|++... .+..+..++||+||||+++++||||++.|... ...++||+|+
T Consensus 77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 77 EELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 23688999999999999999875 34456779999999999999999999999863 4699999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.86 E-value=2e-21 Score=130.26 Aligned_cols=116 Identities=35% Similarity=0.523 Sum_probs=82.7
Q ss_pred HHHHHHHH-hhCCCCCCcccHHHHHHHHHHHHhhhcCCccccCC-CCccceEEeccCCCCCH---HHHHHHHHhhhccCC
Q 031070 35 LVPQNAAR-YALRMRPMQWDPNLARYAQQYANKRRYDCELKHSN-GPYGENIFWGSGNGWTP---AQAVMAWISEKKSYD 109 (166)
Q Consensus 35 l~~hN~~R-~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~-~~~Gen~~~~~~~~~~~---~~~v~~W~~e~~~y~ 109 (166)
|+.||++| ...++++|+||++|++.|+.+| +.|...... ...|++........... ...++.|+.+...+.
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHA----KYCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYN 76 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHH----TTTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEE
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhh----HHhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccc
Confidence 78999999 8888888999999999999999 667652222 24577777665222211 112999999999988
Q ss_pred cCC--CCCCCCcccchHHHHHHhcCCeEEEEEEEeCCCCe-EEEEEEe
Q 031070 110 YWS--NSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRG-VFITCNY 154 (166)
Q Consensus 110 ~~~--~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~~~-~~~vC~Y 154 (166)
... ........++||+||+|+++++||||+..|..+.. .++||.|
T Consensus 77 ~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 77 FQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp TTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred cccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 772 12222456899999999999999999999998733 9999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.82 E-value=3.9e-19 Score=122.39 Aligned_cols=106 Identities=24% Similarity=0.375 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhcCCccccCCC-----------------CccceEEeccCCC
Q 031070 29 SLANQFLVPQNAARYALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNG-----------------PYGENIFWGSGNG 91 (166)
Q Consensus 29 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~ 91 (166)
++++++|+.||.+|.+++++||.||+.|++.|+.||++|+..+.+.|..+ .+|||++.+.
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~--- 79 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN--- 79 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC---
Confidence 56789999999999999999999999999999999999998888888742 3489998655
Q ss_pred CCHHHHHHHHHhhhccCCcCCCCCCCCcccchHHHHHHhcCCeEEEEEEEeCCCCeEEEEEEe
Q 031070 92 WTPAQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGVFITCNY 154 (166)
Q Consensus 92 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~~~~~~vC~Y 154 (166)
.++..+++.|+++ .+|+.+|+|++.+++|||++.++++ ..|+|-.|
T Consensus 80 ~~~~~~v~~W~~S----------------~gH~~nil~~~~~~~Gvg~~~~~~g-~~y~~q~F 125 (127)
T TIGR02909 80 STVEAVHNAWMNS----------------PGHRANILNPNYTEIGVGYVEGGSG-GIYWTQMF 125 (127)
T ss_pred CCHHHHHHHHHcC----------------HhHHHHHcCCCcCeEeEEEEeCCCC-CeEEEEEe
Confidence 4788999999853 5799999999999999999998776 45555544
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.68 E-value=7.3e-16 Score=104.45 Aligned_cols=103 Identities=28% Similarity=0.393 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhcCCccccCCC-----------------CccceEEeccCCCCCH
Q 031070 32 NQFLVPQNAARYALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNG-----------------PYGENIFWGSGNGWTP 94 (166)
Q Consensus 32 ~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~~~~ 94 (166)
+.+++.+|.+|..++++||+||++|+..|+.+|++|+......|.+. .+|||++... ..+
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~---~~~ 78 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGY---STA 78 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccC---CCH
Confidence 57899999999999999999999999999999999986666666652 1388887665 278
Q ss_pred HHHHHHHHhhhccCCcCCCCCCCCcccchHHHHHHhcCCeEEEEEEEeCCCCeEEEEEEe
Q 031070 95 AQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFGGRGVFITCNY 154 (166)
Q Consensus 95 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~~~~~~~vC~Y 154 (166)
.++++.|+++ .+|+.+|+++..+++|||+....++ ..++|..|
T Consensus 79 ~~~~~~w~~~----------------~~H~~~ll~~~~~~~Gvg~~~~~~~-~~y~~~~f 121 (122)
T cd05379 79 EAAVDGWMNS----------------PGHRANILNPDYTEVGVGVAYGGDG-GYYWVQVF 121 (122)
T ss_pred HHHHHHHhCC----------------HhHHHHHcCCCcceeeEEEEeCCCC-CeEEEEec
Confidence 8999999743 5799999999999999999998865 45666554
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.27 E-value=3.2e-11 Score=89.55 Aligned_cols=99 Identities=22% Similarity=0.375 Sum_probs=85.1
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhhcCCccccCCC-----------------CccceEEeccC
Q 031070 27 YWSLANQFLVPQNAARYALRMRPMQWDPNLARYAQQYANKRRYDCELKHSNG-----------------PYGENIFWGSG 89 (166)
Q Consensus 27 ~~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~ 89 (166)
..++.+.+++.+|++|..+++++|.||.+|+..|+.++..|+....+.|..+ .+||||+.+.
T Consensus 77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~- 155 (207)
T COG2340 77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGS- 155 (207)
T ss_pred cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCC-
Confidence 4578889999999999999999999999999999999999998888888762 4799999886
Q ss_pred CCCCH-HHHHHHHHhhhccCCcCCCCCCCCcccchHHHHHHhcCCeEEEEEEEeCC
Q 031070 90 NGWTP-AQAVMAWISEKKSYDYWSNSCSGGQQCGHYTQVVRSRTRRVGCAKVTCFG 144 (166)
Q Consensus 90 ~~~~~-~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~qmiw~~~~~vGCa~~~c~~ 144 (166)
.+. ..+++.|.+ ..||-.+|+-.+.+.+|.|+..-..
T Consensus 156 --~~~~~~~v~~Wl~----------------S~gH~~nll~~~~~~~Gv~~~~~~~ 193 (207)
T COG2340 156 --NDPPEAAVDGWLN----------------SPGHRKNLLNPAYTEIGVGVAYDAS 193 (207)
T ss_pred --CCchHHHHHHhcC----------------ChhhhhhccCcchhheeEEEEecCC
Confidence 233 799999963 3578899999999999999998544
No 15
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=92.55 E-value=0.062 Score=23.58 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=7.2
Q ss_pred CchhHHHHHH
Q 031070 1 MSKLILATVG 10 (166)
Q Consensus 1 ~m~~~l~l~~ 10 (166)
|||+.++|++
T Consensus 1 MMk~vIIlvv 10 (19)
T PF13956_consen 1 MMKLVIILVV 10 (19)
T ss_pred CceehHHHHH
Confidence 8997776663
No 16
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=91.71 E-value=0.13 Score=24.74 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=10.7
Q ss_pred CchhHHHHHHHHHHHhhh
Q 031070 1 MSKLILATVGILLLLISS 18 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~ 18 (166)
|||.++.+++.++.+..+
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 578887777444444443
No 17
>PRK09810 entericidin A; Provisional
Probab=91.01 E-value=0.27 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHHHhhhhhcc
Q 031070 1 MSKLILATVGILLLLISSSNAS 22 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~~~~~ 22 (166)
|||.++++++++++.+..++..
T Consensus 1 mMkk~~~l~~~~~~~L~aCNTv 22 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGCNTA 22 (41)
T ss_pred ChHHHHHHHHHHHHHHhhhhhc
Confidence 8998777775555555555554
No 18
>PRK10598 lipoprotein; Provisional
Probab=84.94 E-value=2 Score=31.43 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHhhhhhcc--CCCCChHHHHHHHHHHHHHHhhCCCC
Q 031070 2 SKLILATVGILLLLISSSNAS--SNSNYWSLANQFLVPQNAARYALRMR 48 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~il~~hN~~R~~~~m~ 48 (166)
||.+++.++++++++.+.+++ ..+.|+.+.+.-|..|+.+-.+.+.+
T Consensus 1 mk~~~~~~~~~~~~llsGC~sl~~ysISE~Ein~yL~k~~~~~k~~G~~ 49 (186)
T PRK10598 1 MKKFLFAAALLVSGLLVGCNQLTQYTISEQEINQYLAKHNNFEKQIGLP 49 (186)
T ss_pred CchHHHHHHHHHHHHHhcccccCceeecHHHHHHHHHHhccHHHhcCCC
Confidence 555543333333333322333 34678999999999999999999843
No 19
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=80.83 E-value=5.3 Score=27.58 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHHHhhhhhccCCCCChHHHHHHHHHHHHHHhhCCCCCC
Q 031070 11 ILLLLISSSNASSNSNYWSLANQFLVPQNAARYALRMRPM 50 (166)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~~m~~L 50 (166)
+++++..|+.++....+.+..++-+...+.+|....+++=
T Consensus 18 ~~l~l~~c~~~~~~~Ltg~Y~~DT~~Vi~tlr~~i~lpkd 57 (135)
T TIGR03044 18 LCLLLTACSGAAKTRLTGDYVEDTLAVIQTLREAIDLPDD 57 (135)
T ss_pred HHHHHhcccCCCcccccchHHHHHHHHHHHHHHHHcCCCC
Confidence 4445555555666677899999999999999999998543
No 20
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.67 E-value=3.5 Score=29.39 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=23.0
Q ss_pred CchhHHHHHHHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHhhC
Q 031070 1 MSKLILATVGILLLLISSSNASSNSNYWSLANQFLVPQNAARYAL 45 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~ 45 (166)
|||.++++|+++++++..+... .++...++..-+.|..-
T Consensus 1 ~mRvl~i~Lliis~fl~a~~s~------~ek~s~~~~~~d~ksi~ 39 (182)
T COG2143 1 VMRVLLIVLLIISLFLSACKSN------NEKRSNIDVFDDNKSIS 39 (182)
T ss_pred CcchHHHHHHHHHHHHHHHhCC------chhhhhhhhHHHHHhcC
Confidence 7888888886665555544444 34444555555555543
No 21
>COG5510 Predicted small secreted protein [Function unknown]
Probab=76.98 E-value=3.3 Score=22.66 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=9.7
Q ss_pred Cchh---HHHHHHHHHHHhhhhhcc
Q 031070 1 MSKL---ILATVGILLLLISSSNAS 22 (166)
Q Consensus 1 ~m~~---~l~l~~~~~~~~~~~~~~ 22 (166)
|||. +.++++++.+++..++.-
T Consensus 1 mmk~t~l~i~~vll~s~llaaCNT~ 25 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAACNTM 25 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhh
Confidence 6775 222222444444444543
No 22
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=76.64 E-value=5.4 Score=23.10 Aligned_cols=40 Identities=23% Similarity=0.144 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHhhhhhccCC-CCChHHHHHHHHHHHHHH
Q 031070 3 KLILATVGILLLLISSSNASSN-SNYWSLANQFLVPQNAAR 42 (166)
Q Consensus 3 ~~~l~l~~~~~~~~~~~~~~~~-~~~~~~~~~il~~hN~~R 42 (166)
|.+++++++++++.+.+.+|-- .+..++.|.|++.-+++.
T Consensus 2 k~i~~~~~~~~~~~~~a~AQWvV~DP~NlAQ~Iinaa~eiv 42 (55)
T PF13605_consen 2 KKILMLCVACLLLAGPARAQWVVTDPGNLAQNIINAAKEIV 42 (55)
T ss_pred cchHHHHHHHHhcCCcceeEEEEeCchHHHHHHHHHHHHHH
Confidence 4455555455566666777654 346788888888776654
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=73.69 E-value=2.4 Score=33.27 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=22.6
Q ss_pred HHHHhcCCeEEEEEEEeCCCCeEEEEEEecCCCCCC
Q 031070 126 QVVRSRTRRVGCAKVTCFGGRGVFITCNYDPPGNYI 161 (166)
Q Consensus 126 qmiw~~~~~vGCa~~~c~~~~~~~~vC~Y~p~gn~~ 161 (166)
-+||+..|.-=-....=+ ..++++|.|+|.||+.
T Consensus 79 lIvWDs~TtnK~haipl~--s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLP--SSWVMTCAYSPSGNFV 112 (343)
T ss_pred EEEEEcccccceeEEecC--ceeEEEEEECCCCCeE
Confidence 578887665433333222 3599999999998763
No 24
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=73.00 E-value=40 Score=25.80 Aligned_cols=132 Identities=19% Similarity=0.200 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCC-----------cc-cHHHHHHHHHHHHhhhcCCccccCC--C----------CccceEE
Q 031070 30 LANQFLVPQNAARYALRMRPM-----------QW-DPNLARYAQQYANKRRYDCELKHSN--G----------PYGENIF 85 (166)
Q Consensus 30 ~~~~il~~hN~~R~~~~m~~L-----------~W-d~~La~~A~~~a~~~~~~C~~~~~~--~----------~~Gen~~ 85 (166)
..-++|+..|..|...|+... .. +++| .....|. .-|...... . .-.-+.+
T Consensus 34 ~~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~----~iC~~l~pt~~~~~~~~~~~~pf~~GTyA 108 (254)
T PF11054_consen 34 TSVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWK----KICEHLIPTQAEPAAEASKLNPFKDGTYA 108 (254)
T ss_pred cchhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHH----HHHHHhcCCCCcchhhccccCcCCCCceE
Confidence 356899999999999994321 12 3334 4455666 555433221 0 1112233
Q ss_pred ecc--CCCCCHHHHHHHHHhhhccCCcCCCC------CCCCcccchHHHHHHhcCCe-EEEEEEEeCCC-----------
Q 031070 86 WGS--GNGWTPAQAVMAWISEKKSYDYWSNS------CSGGQQCGHYTQVVRSRTRR-VGCAKVTCFGG----------- 145 (166)
Q Consensus 86 ~~~--~~~~~~~~~v~~W~~e~~~y~~~~~~------~~~~~~~~~f~qmiw~~~~~-vGCa~~~c~~~----------- 145 (166)
+.. +...+..++|+.|=.-.++++--.+. .+.+.+.-.|.-|-..+.+- .-|.+..|+..
T Consensus 109 f~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~ 188 (254)
T PF11054_consen 109 FKSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQ 188 (254)
T ss_pred eeeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCccccc
Confidence 333 56789999999997777766542222 22333345565565555554 47999999642
Q ss_pred --------CeEEEEEEecCCCC-CCCCCCC
Q 031070 146 --------RGVFITCNYDPPGN-YIGERPY 166 (166)
Q Consensus 146 --------~~~~~vC~Y~p~gn-~~g~~~Y 166 (166)
..+-++|.-.|..- ..|..||
T Consensus 189 ~d~~~~~~~gyAliCkT~P~Al~~~~saPF 218 (254)
T PF11054_consen 189 GDSDSESKTGYALICKTMPAALASDGSAPF 218 (254)
T ss_pred CCCcccccceEEEEEecCchhhcCCCCCCC
Confidence 35788999998754 5566654
No 25
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=70.86 E-value=14 Score=21.80 Aligned_cols=36 Identities=22% Similarity=0.039 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHHHhhh--hhccCCCCChHHHHHHHH
Q 031070 1 MSKLILATVGILLLLISS--SNASSNSNYWSLANQFLV 36 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~--~~~~~~~~~~~~~~~il~ 36 (166)
|++..+.+.++++++.++ ..+.....|-+.|-..|+
T Consensus 1 M~~k~~~la~~~~L~~~~~~~~a~a~~ltiEqRLa~LE 38 (60)
T PF11471_consen 1 MKIKKLALAVAILLASSACSASAQAAPLTIEQRLAALE 38 (60)
T ss_pred CcccHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHH
Confidence 553444333333333332 345544556666655554
No 26
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=67.69 E-value=9.7 Score=21.36 Aligned_cols=10 Identities=30% Similarity=0.252 Sum_probs=6.9
Q ss_pred CchhHHHHHH
Q 031070 1 MSKLILATVG 10 (166)
Q Consensus 1 ~m~~~l~l~~ 10 (166)
|||..+.+++
T Consensus 1 MmKk~i~~i~ 10 (48)
T PRK10081 1 MVKKTIAAIF 10 (48)
T ss_pred ChHHHHHHHH
Confidence 8997666644
No 27
>COG3784 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.47 E-value=14 Score=24.16 Aligned_cols=18 Identities=28% Similarity=0.134 Sum_probs=13.6
Q ss_pred ChHHHHHHHHHHHHHHhh
Q 031070 27 YWSLANQFLVPQNAARYA 44 (166)
Q Consensus 27 ~~~~~~~il~~hN~~R~~ 44 (166)
++.+-+.++..+|..|+.
T Consensus 48 ~daet~alv~~IN~aR~a 65 (109)
T COG3784 48 TDAETQALVADINAARAA 65 (109)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 455667888888988875
No 28
>PRK11627 hypothetical protein; Provisional
Probab=56.62 E-value=11 Score=27.81 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHHHHhhhhh
Q 031070 1 MSKLILATVGILLLLISSSN 20 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~~~ 20 (166)
|||.+|+.++.++++..|++
T Consensus 1 mlkklll~l~a~~~L~gCA~ 20 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCAT 20 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcC
Confidence 88888766633444444443
No 29
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=52.83 E-value=27 Score=23.75 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHH
Q 031070 35 LVPQNAARYALRMRPMQWDPNLA 57 (166)
Q Consensus 35 l~~hN~~R~~~~m~~L~Wd~~La 57 (166)
+-.||.-|++-++.++.-..-++
T Consensus 19 ~~~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 19 FYCHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred HHHHHHHHhhcCCCCcCCceecC
Confidence 34577778777877776544343
No 30
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=51.73 E-value=12 Score=27.50 Aligned_cols=15 Identities=33% Similarity=0.673 Sum_probs=8.4
Q ss_pred chhHHHHHHHHHHHh
Q 031070 2 SKLILATVGILLLLI 16 (166)
Q Consensus 2 m~~~l~l~~~~~~~~ 16 (166)
||++++|++|++++.
T Consensus 1 MKll~~lilli~~~~ 15 (212)
T PF11912_consen 1 MKLLISLILLILLII 15 (212)
T ss_pred CcHHHHHHHHHHHHH
Confidence 888655554444443
No 31
>PRK10449 heat-inducible protein; Provisional
Probab=49.84 E-value=16 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHhhhhhc
Q 031070 2 SKLILATVGILLLLISSSNA 21 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~~~ 21 (166)
||.++++++++++++.|+..
T Consensus 1 mk~~~~~~~~~~~l~~C~~~ 20 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSS 20 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCC
Confidence 66666666555555555443
No 32
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=48.21 E-value=13 Score=24.25 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=11.1
Q ss_pred chhHHHHHHHHHHHhhhhhcc
Q 031070 2 SKLILATVGILLLLISSSNAS 22 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~~~~ 22 (166)
||++++..++++++ .++++|
T Consensus 1 mKk~ll~~~lallL-tgCatq 20 (97)
T PF06291_consen 1 MKKLLLAAALALLL-TGCATQ 20 (97)
T ss_pred CcHHHHHHHHHHHH-ccccee
Confidence 77766666455444 444444
No 33
>PHA03302 envelope glycoprotein L; Provisional
Probab=47.27 E-value=29 Score=26.54 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHHHhhhhhccCCCCChHHHH
Q 031070 1 MSKLILATVGILLLLISSSNASSNSNYWSLAN 32 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 32 (166)
||+.+++.+++++.++..+.++...-.+..++
T Consensus 1 ~~~~Ll~~~~l~~iv~~aa~~~~~~~~~~~~~ 32 (253)
T PHA03302 1 MMHLLLFVLLLILIVFSAAASLNNSVAEYREA 32 (253)
T ss_pred ChhhHHHHHHHHHHHHHHHHhhcCCccccchh
Confidence 78877766666666666666665433334444
No 34
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=47.25 E-value=14 Score=20.55 Aligned_cols=16 Identities=19% Similarity=-0.133 Sum_probs=8.9
Q ss_pred chhHHHHHHHHHHHhh
Q 031070 2 SKLILATVGILLLLIS 17 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~ 17 (166)
||..|+|++.+.++..
T Consensus 3 lKKsllLlfflG~ISl 18 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISL 18 (46)
T ss_pred chHHHHHHHHHHHccc
Confidence 6766766654444433
No 35
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=46.93 E-value=20 Score=25.28 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=11.7
Q ss_pred chhHHHHHHHHHHHhhhhhcc
Q 031070 2 SKLILATVGILLLLISSSNAS 22 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~~~~ 22 (166)
|+.+++++++++++..|+.++
T Consensus 1 Mrk~l~~~~l~l~LaGCAt~~ 21 (151)
T PRK13883 1 MRKIVLLALLALALGGCATSQ 21 (151)
T ss_pred ChhHHHHHHHHHHHhcccCCC
Confidence 566665554555555555433
No 36
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=46.26 E-value=17 Score=26.99 Aligned_cols=20 Identities=40% Similarity=0.476 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHHhhhhhcc
Q 031070 2 SKLILATVGILLLLISSSNAS 22 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~~~~ 22 (166)
||++++|+ ++++++.|+..+
T Consensus 1 mk~i~~l~-l~lll~~C~~~~ 20 (216)
T PF11153_consen 1 MKKILLLL-LLLLLTGCSTNP 20 (216)
T ss_pred ChHHHHHH-HHHHHHhhcCCC
Confidence 77777666 555555555544
No 37
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=42.91 E-value=29 Score=30.90 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHHHhhCC----------------------CCCCcccHHHHHHHHHHHHhhh
Q 031070 27 YWSLANQFLVPQNAARYALR----------------------MRPMQWDPNLARYAQQYANKRR 68 (166)
Q Consensus 27 ~~~~~~~il~~hN~~R~~~~----------------------m~~L~Wd~~La~~A~~~a~~~~ 68 (166)
...+|+.+++.+|.-+.... |-.|-||..|++.|+....+|.
T Consensus 781 ~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 781 LVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred chhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhc
Confidence 45789999999999777443 5688999999999999996665
No 38
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=42.02 E-value=21 Score=21.34 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=11.6
Q ss_pred chhHHHHHHHHHHHhhhhhc
Q 031070 2 SKLILATVGILLLLISSSNA 21 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~~~ 21 (166)
||.++-|++++++++.++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 66666555555555555555
No 39
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=42.02 E-value=14 Score=14.71 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=3.8
Q ss_pred CCCCCC
Q 031070 161 IGERPY 166 (166)
Q Consensus 161 ~g~~~Y 166 (166)
.|||+|
T Consensus 8 ~GqP~Y 13 (13)
T PF04648_consen 8 PGQPMY 13 (13)
T ss_pred CCCcCC
Confidence 466666
No 40
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=36.58 E-value=17 Score=25.25 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=6.5
Q ss_pred CchhHHHHH
Q 031070 1 MSKLILATV 9 (166)
Q Consensus 1 ~m~~~l~l~ 9 (166)
||++.|+|+
T Consensus 1 ~~~~~~~~~ 9 (141)
T PRK12618 1 MMRLVLLLL 9 (141)
T ss_pred ChhHHHHHH
Confidence 888766665
No 41
>PRK11443 lipoprotein; Provisional
Probab=36.01 E-value=33 Score=23.36 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=22.2
Q ss_pred CcccHHHHHHHHHHHHhhhcCCccccCC--CCccceEEeccCCCCCHHHHHHHHHhh
Q 031070 50 MQWDPNLARYAQQYANKRRYDCELKHSN--GPYGENIFWGSGNGWTPAQAVMAWISE 104 (166)
Q Consensus 50 L~Wd~~La~~A~~~a~~~~~~C~~~~~~--~~~Gen~~~~~~~~~~~~~~v~~W~~e 104 (166)
+....-+.-..+=.. .-|...+.- +..|+...-.-++.......-..|...
T Consensus 61 vd~~~Y~~GY~~G~~----~YC~~~~ay~lG~~G~~Y~GvC~~~~~~~~l~~~wQ~g 113 (124)
T PRK11443 61 VDRGLYLKGYAEGQK----KTCQTDFTYARGLSGKSFPASCDNVENASQLHEVWQKG 113 (124)
T ss_pred CCHHHHHHHHHHHHH----HHcCCcHHHHHhcCCCccCCCCCCcccHHHHHHHHHHh
Confidence 333333334444444 667544321 333444333223344555555567543
No 42
>PRK10053 hypothetical protein; Provisional
Probab=35.66 E-value=31 Score=23.70 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=6.7
Q ss_pred chhHHHHHHHHHH
Q 031070 2 SKLILATVGILLL 14 (166)
Q Consensus 2 m~~~l~l~~~~~~ 14 (166)
||+++++++++++
T Consensus 1 MKK~~~~~~~~~~ 13 (130)
T PRK10053 1 MKLQAIALASFLV 13 (130)
T ss_pred CcHHHHHHHHHHH
Confidence 6665555544333
No 43
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=35.63 E-value=31 Score=19.58 Aligned_cols=8 Identities=25% Similarity=0.202 Sum_probs=5.1
Q ss_pred chhHHHHH
Q 031070 2 SKLILATV 9 (166)
Q Consensus 2 m~~~l~l~ 9 (166)
||..|+++
T Consensus 1 MKY~lL~l 8 (55)
T PRK13859 1 MKYCLLCL 8 (55)
T ss_pred CchhHHHH
Confidence 67666555
No 44
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=35.48 E-value=1.2e+02 Score=19.67 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=8.8
Q ss_pred chhHHHHHH-HHHHHhhhhhc
Q 031070 2 SKLILATVG-ILLLLISSSNA 21 (166)
Q Consensus 2 m~~~l~l~~-~~~~~~~~~~~ 21 (166)
||.+|+..+ +.++++.+|.+
T Consensus 1 M~k~l~sal~~~~~L~~GCAs 21 (96)
T PF11839_consen 1 MKKLLLSALALAALLLAGCAS 21 (96)
T ss_pred CchHHHHHHHHHHHHHhHccC
Confidence 555554443 33333444444
No 45
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=35.00 E-value=34 Score=24.76 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHhhhhhccCCC
Q 031070 2 SKLILATVGILLLLISSSNASSNS 25 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~~~~~~~ 25 (166)
||.++.+++++++++.|...+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~c~~~~~~~ 24 (177)
T TIGR03516 1 MKHLIAVILLLLLLLGCKTPEARR 24 (177)
T ss_pred CceeHHHHHHHHHHhhcCCCCCCC
Confidence 444444444566667777776653
No 46
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=32.93 E-value=81 Score=24.28 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=22.2
Q ss_pred CchhHHHHHHHHHHHhhhhhccC-CCCChHHHHHHHHHHHH
Q 031070 1 MSKLILATVGILLLLISSSNASS-NSNYWSLANQFLVPQNA 40 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~~~~~~-~~~~~~~~~~il~~hN~ 40 (166)
|||..++++.+++++..|..... ...++++..+|++..-+
T Consensus 1 m~~~~~~~~~~~~lLs~c~~~~Lys~L~~~dAneIv~~L~~ 41 (252)
T PRK15324 1 MIRRYLYTFLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQM 41 (252)
T ss_pred CchHHHHHHHHHHHHcCCCeehhhcCCCHHHHHHHHHHHHH
Confidence 77766665544444444433322 23466777777766544
No 47
>COG3909 Cytochrome c556 [Energy production and conversion]
Probab=32.83 E-value=1.2e+02 Score=21.15 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=27.7
Q ss_pred CchhHHHHHHHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHhhCC-C--CCCcccHHHHHH
Q 031070 1 MSKLILATVGILLLLISSSNASSNSNYWSLANQFLVPQNAARYALR-M--RPMQWDPNLARY 59 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~~-m--~~L~Wd~~La~~ 59 (166)
|||+--+++.+++..+..+.....-..+..|+.++...=.-=-..+ | ...-+|.+.-+.
T Consensus 1 ~mklkal~~~ll~~~~~~~a~~a~p~~~~~RqalmKemg~~~g~l~~m~Kge~PfDae~vka 62 (147)
T COG3909 1 QMKLKALAIALLLGALGGSAVPADPEGEIKRQALMKEMGKTFGRLGKMAKGEKPFDAEKVKA 62 (147)
T ss_pred CccHHHHHHHHHHHHhcccccccCCccHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 6776665554444444333333222234467777665433222222 2 344466665443
No 48
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=32.56 E-value=1.6e+02 Score=21.90 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 031070 30 LANQFLVPQNAARYALRMRPMQWDPNLARYAQQYANK 66 (166)
Q Consensus 30 ~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~ 66 (166)
+++.+-.....+++ |++|-+|++.-+.+.++
T Consensus 33 E~D~L~~I~~rl~~------~e~sGel~~~~~~~~~r 63 (202)
T TIGR02743 33 EPDMLEVIEQRLKR------LEQSGELKAMQQRFQSR 63 (202)
T ss_pred chHHHHHHHHHHHh------hhhCchHHHHHHHHHHH
Confidence 34444444444444 47888888777665543
No 49
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.87 E-value=43 Score=22.20 Aligned_cols=8 Identities=25% Similarity=0.173 Sum_probs=5.3
Q ss_pred chhHHHHH
Q 031070 2 SKLILATV 9 (166)
Q Consensus 2 m~~~l~l~ 9 (166)
||.+++++
T Consensus 1 MKk~~ll~ 8 (114)
T PF11777_consen 1 MKKIILLA 8 (114)
T ss_pred CchHHHHH
Confidence 67666666
No 50
>PRK10002 outer membrane protein F; Provisional
Probab=31.33 E-value=36 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=10.3
Q ss_pred CchhHHH-HHHHHHHHhhhhhc
Q 031070 1 MSKLILA-TVGILLLLISSSNA 21 (166)
Q Consensus 1 ~m~~~l~-l~~~~~~~~~~~~~ 21 (166)
|||+-|+ +++.++++..+++|
T Consensus 1 ~mkktl~a~a~~a~~~a~~a~A 22 (362)
T PRK10002 1 MMKRNILAVIVPALLVAGTANA 22 (362)
T ss_pred CccHhHHHHHHHHHHHhcccce
Confidence 8997554 33233333444444
No 51
>PRK14762 membrane protein; Provisional
Probab=30.25 E-value=52 Score=15.68 Aligned_cols=9 Identities=44% Similarity=0.320 Sum_probs=4.5
Q ss_pred chhHHHHHH
Q 031070 2 SKLILATVG 10 (166)
Q Consensus 2 m~~~l~l~~ 10 (166)
||.++..+.
T Consensus 1 mki~lw~i~ 9 (27)
T PRK14762 1 MKIILWAVL 9 (27)
T ss_pred CeeHHHHHH
Confidence 555554443
No 52
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=29.94 E-value=55 Score=20.29 Aligned_cols=9 Identities=22% Similarity=-0.005 Sum_probs=5.8
Q ss_pred chhHHHHHH
Q 031070 2 SKLILATVG 10 (166)
Q Consensus 2 m~~~l~l~~ 10 (166)
||+++++++
T Consensus 1 MKK~~~~~~ 9 (80)
T PF11106_consen 1 MKKIIYGLF 9 (80)
T ss_pred ChhHHHHHH
Confidence 677776554
No 53
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=28.67 E-value=81 Score=18.01 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=6.8
Q ss_pred chhHHHHHHHHHH
Q 031070 2 SKLILATVGILLL 14 (166)
Q Consensus 2 m~~~l~l~~~~~~ 14 (166)
||.+.+|.+++++
T Consensus 1 MRTL~LLaAlLLl 13 (52)
T PF00879_consen 1 MRTLALLAALLLL 13 (52)
T ss_pred CcHHHHHHHHHHH
Confidence 6666655543333
No 54
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=28.28 E-value=1.4e+02 Score=17.86 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhhhcc
Q 031070 8 TVGILLLLISSSNAS 22 (166)
Q Consensus 8 l~~~~~~~~~~~~~~ 22 (166)
+|++++++..+.++.
T Consensus 8 vLai~lLI~l~~ns~ 22 (66)
T PF07438_consen 8 VLAIALLISLSVNSE 22 (66)
T ss_pred HHHHHHHHHHhhhHH
Confidence 333555555555554
No 55
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=28.11 E-value=1.6e+02 Score=19.02 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHhh
Q 031070 6 LATVGILLLLISSSNASSNSNYWSLANQFLVPQNAARYA 44 (166)
Q Consensus 6 l~l~~~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~ 44 (166)
|+++++++++|.+.-- .+.-+.+=.....+|..
T Consensus 10 liIlvIvlllFG~~KL------Pelg~~lGk~ik~FKka 42 (92)
T PRK00442 10 IVILVVVVLVFGTKKL------KNLGSDVGESIKGFRKA 42 (92)
T ss_pred HHHHHHHHHHhCcchH------HHHHHHHHHHHHHHHHH
Confidence 3344355666653322 24556666677777764
No 56
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=27.88 E-value=47 Score=24.51 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHHHhhhhh
Q 031070 1 MSKLILATVGILLLLISSSN 20 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~~~ 20 (166)
|||.+..++++++++..|++
T Consensus 3 k~k~~~~il~~al~l~GCs~ 22 (200)
T COG3417 3 KMKIYASILLLALFLSGCSS 22 (200)
T ss_pred hHHHHHHHHHHHHHHhhccc
Confidence 57777777756666666553
No 57
>PF15240 Pro-rich: Proline-rich
Probab=27.67 E-value=44 Score=24.33 Aligned_cols=9 Identities=44% Similarity=0.357 Sum_probs=3.6
Q ss_pred HHHhhhhhcc
Q 031070 13 LLLISSSNAS 22 (166)
Q Consensus 13 ~~~~~~~~~~ 22 (166)
+|+++ +.||
T Consensus 9 ALLAL-SSAQ 17 (179)
T PF15240_consen 9 ALLAL-SSAQ 17 (179)
T ss_pred HHHHh-hhcc
Confidence 33333 3444
No 58
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=27.58 E-value=67 Score=20.26 Aligned_cols=6 Identities=50% Similarity=1.115 Sum_probs=2.3
Q ss_pred HHHHHh
Q 031070 11 ILLLLI 16 (166)
Q Consensus 11 ~~~~~~ 16 (166)
++++++
T Consensus 37 IiLlIm 42 (85)
T PF10717_consen 37 IILLIM 42 (85)
T ss_pred HHHHHH
Confidence 334333
No 59
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=27.26 E-value=60 Score=24.70 Aligned_cols=15 Identities=27% Similarity=-0.002 Sum_probs=9.3
Q ss_pred CchhHHHHHHHHHHH
Q 031070 1 MSKLILATVGILLLL 15 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~ 15 (166)
|||..++++++++.+
T Consensus 1 ~mkk~~~~~~~a~~l 15 (234)
T PRK10523 1 MMKKAIITALAAAGL 15 (234)
T ss_pred CchHHHHHHHHHHHH
Confidence 898776666544333
No 60
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=27.16 E-value=52 Score=22.49 Aligned_cols=10 Identities=10% Similarity=0.016 Sum_probs=5.8
Q ss_pred chhHHHHHHH
Q 031070 2 SKLILATVGI 11 (166)
Q Consensus 2 m~~~l~l~~~ 11 (166)
||++++++++
T Consensus 1 MKK~~~~~~~ 10 (126)
T TIGR00156 1 MKFQAIVLAS 10 (126)
T ss_pred CchHHHHHHH
Confidence 6666655544
No 61
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=27.16 E-value=79 Score=18.62 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhhhcc
Q 031070 8 TVGILLLLISSSNAS 22 (166)
Q Consensus 8 l~~~~~~~~~~~~~~ 22 (166)
|||+++..+.-++.|
T Consensus 10 lLC~aLva~vQ~APQ 24 (65)
T PF10731_consen 10 LLCVALVAIVQSAPQ 24 (65)
T ss_pred HHHHHHHHHHhcCcc
Confidence 333333333333333
No 62
>PRK11289 ampC beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=26.58 E-value=1.8e+02 Score=23.69 Aligned_cols=20 Identities=5% Similarity=-0.265 Sum_probs=11.7
Q ss_pred ChHHHHHHHHHHHHHHhhCC
Q 031070 27 YWSLANQFLVPQNAARYALR 46 (166)
Q Consensus 27 ~~~~~~~il~~hN~~R~~~~ 46 (166)
.++.++.+=+....+..+..
T Consensus 28 ~~~~~~~vd~~i~~~~~~~~ 47 (384)
T PRK11289 28 PQQLKDIVDRTITPLMEEQD 47 (384)
T ss_pred hHHHHHHHHHHHHHHHHhCC
Confidence 34556666666666665554
No 63
>PRK13792 lysozyme inhibitor; Provisional
Probab=26.46 E-value=61 Score=22.20 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHhhhhhcc
Q 031070 2 SKLILATVGILLLLISSSNAS 22 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~~~~ 22 (166)
||..|+++++.+.+++++.++
T Consensus 1 mk~~l~~ll~~~~~lLsaCs~ 21 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACGG 21 (127)
T ss_pred ChhHHHHHHHHHHhheecccC
Confidence 554454444444444444444
No 64
>PF06286 Coleoptericin: Coleoptericin; InterPro: IPR009382 This family consists of several insect coleoptericin, acaloleptin, holotricin and rhinocerosin proteins which are all known to be antibacterial proteins []. These all appear to be short, glycine-rich molecules, inducible by infection.; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=26.45 E-value=23 Score=24.10 Aligned_cols=10 Identities=30% Similarity=0.052 Sum_probs=7.4
Q ss_pred CchhHHHHHH
Q 031070 1 MSKLILATVG 10 (166)
Q Consensus 1 ~m~~~l~l~~ 10 (166)
|||+++++-+
T Consensus 1 mmkl~i~~~l 10 (143)
T PF06286_consen 1 MMKLYIIFGL 10 (143)
T ss_pred CceEeeehhH
Confidence 8998776653
No 65
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=26.27 E-value=57 Score=24.48 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHHHhhhh
Q 031070 2 SKLILATVGILLLLISSS 19 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~ 19 (166)
||.+++.+++++++..|+
T Consensus 1 mk~l~~~l~~~l~LsgCa 18 (215)
T PF05643_consen 1 MKKLILGLAAALLLSGCA 18 (215)
T ss_pred ChhHHHHHHHHHHHhhcc
Confidence 777776665545444444
No 66
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=26.23 E-value=63 Score=26.68 Aligned_cols=45 Identities=24% Similarity=0.160 Sum_probs=22.9
Q ss_pred CchhHHHHHHHHHHHhhhhhccCC---C----CChHHHHHHHHHHHHHHhhCC
Q 031070 1 MSKLILATVGILLLLISSSNASSN---S----NYWSLANQFLVPQNAARYALR 46 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~~~~~~~~~---~----~~~~~~~~il~~hN~~R~~~~ 46 (166)
|||.+++++ |+++++.+..+... . ..-...+.+++.|-+.|.+.-
T Consensus 21 mmk~~~ai~-l~l~~~~t~~at~l~~~~~~~~aah~~tdal~dy~~q~egqpl 72 (507)
T COG4287 21 MMKRFLAIT-LTLFFISTKVATLLHNPPMVCRAAHHLTDALLDYRVQAEGQPL 72 (507)
T ss_pred HHHHHHHHH-HHHHHhcchhhhhhcCCceeecccccchhhhhHHHHHhccCce
Confidence 677777666 44444443333221 0 112355666766666665543
No 67
>PF03866 HAP: Hydrophobic abundant protein (HAP) ; InterPro: IPR005566 Expression of Hydrophobic Abundant protein is thought to be developmentally regulated and possibly involved in spherule cell wall formation [].
Probab=25.83 E-value=70 Score=22.08 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=11.1
Q ss_pred CchhHHHHHHHHHHH
Q 031070 1 MSKLILATVGILLLL 15 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~ 15 (166)
|||.+++-+|+.+.+
T Consensus 1 mmkyvfvalc~~avv 15 (164)
T PF03866_consen 1 MMKYVFVALCLFAVV 15 (164)
T ss_pred CchhHHHHHHHHHHH
Confidence 999888877755544
No 68
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=25.61 E-value=1.4e+02 Score=17.14 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=3.8
Q ss_pred HHHhhhhhcc
Q 031070 13 LLLISSSNAS 22 (166)
Q Consensus 13 ~~~~~~~~~~ 22 (166)
++++..+-+.
T Consensus 31 fFVlL~s~s~ 40 (58)
T PF13677_consen 31 FFVLLFSMSS 40 (58)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 69
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=25.55 E-value=75 Score=20.25 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=8.6
Q ss_pred CchhHHHHHHHHHHHh
Q 031070 1 MSKLILATVGILLLLI 16 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~~ 16 (166)
||.+.|++.+++++..
T Consensus 1 Mi~l~iv~~~~~v~~~ 16 (87)
T PF10883_consen 1 MINLQIVGGVGAVVAL 16 (87)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 7776665554333333
No 70
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.52 E-value=63 Score=21.56 Aligned_cols=9 Identities=33% Similarity=0.169 Sum_probs=5.5
Q ss_pred chhHHHHHH
Q 031070 2 SKLILATVG 10 (166)
Q Consensus 2 m~~~l~l~~ 10 (166)
||.+|+++.
T Consensus 1 MKkil~~il 9 (113)
T COG5294 1 MKKILIGIL 9 (113)
T ss_pred CcchHHHHH
Confidence 676666553
No 71
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=25.18 E-value=1.7e+02 Score=17.93 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=17.0
Q ss_pred HHHHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHhh
Q 031070 8 TVGILLLLISSSNASSNSNYWSLANQFLVPQNAARYA 44 (166)
Q Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~ 44 (166)
++++++++|.+.--. +.-..+=.....+|..
T Consensus 12 Il~IvlllFG~kKLP------elgr~lGkair~FK~~ 42 (73)
T PRK02958 12 VLVIVVLVFGTKKLR------NIGSDLGGAVKGFKDG 42 (73)
T ss_pred HHHHHHHHhCcchHH------HHHHHHHHHHHHHHHH
Confidence 333555565533222 4556666677777764
No 72
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=24.60 E-value=1.2e+02 Score=25.48 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHH
Q 031070 53 DPNLARYAQQYAN 65 (166)
Q Consensus 53 d~~La~~A~~~a~ 65 (166)
++++.+++|..|+
T Consensus 82 ~d~~~~~~qqiAn 94 (514)
T PF11336_consen 82 NDDATEMRQQIAN 94 (514)
T ss_pred hHHHHHHHHHHHh
Confidence 7888888888884
No 73
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=23.43 E-value=2.5e+02 Score=20.23 Aligned_cols=20 Identities=20% Similarity=0.043 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHHHHhhCC
Q 031070 27 YWSLANQFLVPQNAARYALR 46 (166)
Q Consensus 27 ~~~~~~~il~~hN~~R~~~~ 46 (166)
.+..++.||...|.+-.+-.
T Consensus 49 yeskkqsil~elnqll~qtt 68 (254)
T PF03207_consen 49 YESKKQSILSELNQLLKQTT 68 (254)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 35678899999888765543
No 74
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=23.38 E-value=70 Score=26.03 Aligned_cols=17 Identities=47% Similarity=0.288 Sum_probs=9.5
Q ss_pred chhHHHHHHHHHHHhhh
Q 031070 2 SKLILATVGILLLLISS 18 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~ 18 (166)
||.+++++++++++..|
T Consensus 1 ~k~~~~~~~~~~~l~~c 17 (359)
T PRK11671 1 MKKYLALALIAPLLISC 17 (359)
T ss_pred CchHHHHHHHHHHHhhh
Confidence 67776555444444444
No 75
>PRK10626 hypothetical protein; Provisional
Probab=23.24 E-value=2.8e+02 Score=21.21 Aligned_cols=20 Identities=25% Similarity=-0.059 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHHHHhhCC
Q 031070 27 YWSLANQFLVPQNAARYALR 46 (166)
Q Consensus 27 ~~~~~~~il~~hN~~R~~~~ 46 (166)
+++.|+.+.+.-..+|+.+.
T Consensus 66 ~~~Qqq~~~~Yq~~lr~~lP 85 (239)
T PRK10626 66 NAAQRQQAKDYQAALRQDLP 85 (239)
T ss_pred CHHHHHHHHHHHHHHHHHCh
Confidence 67888999999999999864
No 76
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=23.05 E-value=2.1e+02 Score=19.16 Aligned_cols=14 Identities=21% Similarity=-0.019 Sum_probs=7.2
Q ss_pred ChHHHHHHHHHHHH
Q 031070 27 YWSLANQFLVPQNA 40 (166)
Q Consensus 27 ~~~~~~~il~~hN~ 40 (166)
++++.+.....+|.
T Consensus 56 te~q~~~~~~rF~~ 69 (112)
T TIGR02744 56 SEAQQKALLGRFNA 69 (112)
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555555554
No 77
>PRK14389 hypothetical protein; Provisional
Probab=23.00 E-value=1e+02 Score=20.16 Aligned_cols=44 Identities=20% Similarity=0.103 Sum_probs=24.5
Q ss_pred CchhHHHHHH----HHHHHhhhhhccCCCCChHHHHHHHHHHHHHHhh
Q 031070 1 MSKLILATVG----ILLLLISSSNASSNSNYWSLANQFLVPQNAARYA 44 (166)
Q Consensus 1 ~m~~~l~l~~----~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~ 44 (166)
||+.+++.+. ..+.-+.+..+.+.-.-.+...+.++.|+-+|..
T Consensus 1 m~~~~~i~lIr~Yq~~iSPl~~~~CRf~PTCS~Ya~~Ai~~~G~~kG~ 48 (98)
T PRK14389 1 MMRRLLMALVRGYRLLLSPWLGSACRFEPTCSAYSLQALEQHGAAAGS 48 (98)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHHhChHHHH
Confidence 7886665543 1111122233333222456777889999998865
No 78
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=22.64 E-value=1.8e+02 Score=19.36 Aligned_cols=6 Identities=50% Similarity=0.855 Sum_probs=2.9
Q ss_pred HHHHHh
Q 031070 11 ILLLLI 16 (166)
Q Consensus 11 ~~~~~~ 16 (166)
+++++|
T Consensus 15 Vallvf 20 (108)
T PRK14858 15 IALIVI 20 (108)
T ss_pred HHHHhc
Confidence 444454
No 79
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=22.61 E-value=2e+02 Score=17.87 Aligned_cols=17 Identities=6% Similarity=0.042 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhC
Q 031070 29 SLANQFLVPQNAARYAL 45 (166)
Q Consensus 29 ~~~~~il~~hN~~R~~~ 45 (166)
+.-..+=.....+|...
T Consensus 27 ~l~~~lGk~ik~FKk~~ 43 (78)
T PRK00720 27 ELMGDVAKGIKSFKKGM 43 (78)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45566777777777543
No 80
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.52 E-value=2.6e+02 Score=19.60 Aligned_cols=19 Identities=5% Similarity=-0.253 Sum_probs=13.2
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 031070 26 NYWSLANQFLVPQNAARYA 44 (166)
Q Consensus 26 ~~~~~~~~il~~hN~~R~~ 44 (166)
.|.+.++.+=..|++|-.+
T Consensus 44 LT~EQQa~~q~I~~~f~~~ 62 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQ 62 (143)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4777777777777776655
No 81
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=22.43 E-value=2.1e+02 Score=18.72 Aligned_cols=11 Identities=9% Similarity=-0.106 Sum_probs=4.8
Q ss_pred ChHHHHHHHHH
Q 031070 27 YWSLANQFLVP 37 (166)
Q Consensus 27 ~~~~~~~il~~ 37 (166)
+++...+.+..
T Consensus 36 aD~~A~~~I~e 46 (100)
T PRK02898 36 ADGQAEEAITE 46 (100)
T ss_pred ccHHHHHHHHH
Confidence 44444444433
No 82
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=22.16 E-value=76 Score=20.30 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHh
Q 031070 6 LATVGILLLLISSSNASSNSNYWSLANQFLVPQNAARY 43 (166)
Q Consensus 6 l~l~~~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~ 43 (166)
|+++++++++|.+. .+ .+.-..+=.....+|.
T Consensus 10 lIIlvIvLLlFG~k--KL----Pelgr~LGkaireFKk 41 (89)
T PRK03554 10 LIIAVIVVLLFGTK--KL----GSIGSDLGASIKGFKK 41 (89)
T ss_pred HHHHHHHHHHhCcc--hH----HHHHHHHHHHHHHHHH
Confidence 33443556666533 21 1445555566666665
No 83
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=22.14 E-value=1.5e+02 Score=20.39 Aligned_cols=28 Identities=4% Similarity=0.032 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031070 36 VPQNAARYALRMRPMQWDPNLARYAQQY 63 (166)
Q Consensus 36 ~~hN~~R~~~~m~~L~Wd~~La~~A~~~ 63 (166)
...+.++..-+...+.-+..+-..+...
T Consensus 26 ~~~~~~~~~~~~~~v~i~~~ml~~~~~~ 53 (155)
T PF14060_consen 26 KYFDKYSENKGVTSVNISKSMLKLASKF 53 (155)
T ss_pred HHHHHhCCCCCeEEEEECHHHHHHHHhc
Confidence 3444666666655566666666655554
No 84
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=21.80 E-value=2.1e+02 Score=18.43 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhC
Q 031070 29 SLANQFLVPQNAARYAL 45 (166)
Q Consensus 29 ~~~~~il~~hN~~R~~~ 45 (166)
+.-+.+=.....+|+..
T Consensus 27 el~r~lGk~ir~fK~a~ 43 (92)
T PRK00575 27 DAARSLGKSLRIFKSEV 43 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666667777643
No 85
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=21.54 E-value=72 Score=18.81 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 031070 29 SLANQFLVPQNAARYALRM 47 (166)
Q Consensus 29 ~~~~~il~~hN~~R~~~~m 47 (166)
+..+++++..|.+|++-|.
T Consensus 24 ~~Pe~Vi~iIN~lR~keGv 42 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEGV 42 (63)
T ss_pred cCHHHHHHHHHHhhhccCc
Confidence 3467899999999999873
No 86
>PRK11372 lysozyme inhibitor; Provisional
Probab=21.37 E-value=80 Score=20.92 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=8.3
Q ss_pred chhHHHHHHHHHHHhhhh
Q 031070 2 SKLILATVGILLLLISSS 19 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~ 19 (166)
||.+++++ +++++..|+
T Consensus 3 mk~ll~~~-~~~lL~gCs 19 (109)
T PRK11372 3 MKKLLIIC-LPVLLTGCS 19 (109)
T ss_pred hHHHHHHH-HHHHHHHhc
Confidence 67666555 333333333
No 87
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=21.36 E-value=2.1e+02 Score=17.58 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHhhCC
Q 031070 8 TVGILLLLISSSNASSNSNYWSLANQFLVPQNAARYALR 46 (166)
Q Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~~ 46 (166)
++++++++|.+.-- .+.-..+=.....+|....
T Consensus 12 Il~i~lllFG~kKL------P~l~~~lGk~ik~Fkk~~~ 44 (74)
T PRK01833 12 IVAIIVLLFGTKKL------RTLGTDLGESVKGFKKAMA 44 (74)
T ss_pred HHHHHHHHhCcchH------HHHHHHHHHHHHHHHHHhc
Confidence 33355555553322 2555666667777777544
No 88
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=21.33 E-value=1.1e+02 Score=17.74 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.3
Q ss_pred CcccHHHHHHHHHHH
Q 031070 50 MQWDPNLARYAQQYA 64 (166)
Q Consensus 50 L~Wd~~La~~A~~~a 64 (166)
|.|...-++.|+..|
T Consensus 1 l~Wt~~Aa~eAeavA 15 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVA 15 (56)
T ss_dssp -STTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhh
Confidence 689999999999999
No 89
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=21.32 E-value=65 Score=25.35 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=8.1
Q ss_pred CchhHHHHHHHHHHH
Q 031070 1 MSKLILATVGILLLL 15 (166)
Q Consensus 1 ~m~~~l~l~~~~~~~ 15 (166)
|||.+++-|++++++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (292)
T PRK13861 1 MIKKLFLTLACLLFA 15 (292)
T ss_pred ChhHHHHHHHHHHHh
Confidence 787655555433333
No 90
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=21.11 E-value=2.3e+02 Score=17.91 Aligned_cols=18 Identities=6% Similarity=-0.022 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 031070 29 SLANQFLVPQNAARYALR 46 (166)
Q Consensus 29 ~~~~~il~~hN~~R~~~~ 46 (166)
+.-..+=.....+|+...
T Consensus 26 ~~~r~lGk~ir~FK~~~~ 43 (84)
T PRK00191 26 DAARSIGRSMRIFKSEVK 43 (84)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445566666667776443
No 91
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=20.40 E-value=1.1e+02 Score=22.71 Aligned_cols=17 Identities=41% Similarity=0.452 Sum_probs=8.1
Q ss_pred chhHHHHHHHHHHHhhhh
Q 031070 2 SKLILATVGILLLLISSS 19 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~ 19 (166)
||++++++ ++++++.|+
T Consensus 1 ~k~l~~~~-~~~lL~~Cs 17 (204)
T PF11873_consen 1 KKKLLLLL-IALLLSGCS 17 (204)
T ss_pred CcCHHHHH-HHHHHHHhC
Confidence 45444444 444455544
No 92
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=20.07 E-value=98 Score=20.74 Aligned_cols=21 Identities=24% Similarity=0.116 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHHHhhhhhcc
Q 031070 2 SKLILATVGILLLLISSSNAS 22 (166)
Q Consensus 2 m~~~l~l~~~~~~~~~~~~~~ 22 (166)
||.+++.+++.+++..+..++
T Consensus 1 mk~~~~~~~~~~~~~~~~~a~ 21 (115)
T PRK09838 1 MKKALKVAMFSLFSVIGFNAQ 21 (115)
T ss_pred CchHHHHHHHHHHHHHhhhhh
Confidence 565555554444444444444
No 93
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=20.06 E-value=92 Score=18.06 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=6.8
Q ss_pred chhHHHHHH-HHHHHhh
Q 031070 2 SKLILATVG-ILLLLIS 17 (166)
Q Consensus 2 m~~~l~l~~-~~~~~~~ 17 (166)
|+.-|++++ +++.+..
T Consensus 1 MR~~lLf~aiLalsla~ 17 (59)
T PF03823_consen 1 MRSTLLFAAILALSLAR 17 (59)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 454444443 3344433
Done!