BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031071
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure
pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
Structures
Length = 70
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 45/59 (76%)
Query: 57 KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFET FRMRG++ALLNF
Sbjct: 4 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 45/59 (76%)
Query: 57 KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 115
KHYRGVR+RPWGKFAAEIRD A++G R+WLGTFET FRMRG++ALLNF
Sbjct: 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed
With Mg- Isocitrate
Length = 416
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant
K230m Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity
Of Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity
Of Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location
Model For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate,
Nadp+, And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes:
Small Structural Changes With Large Catalytic
Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase
May Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By
Phosphorylation Involves No Long-Range Conformational
Change In The Free Enzyme
Length = 416
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 42 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover
Laue Structure Of Rate-limited Product Complex, 10 Msec
Time Resolution
Length = 414
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 44 TSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWL 86
T +ML+ +K Y+G R+ W + + + +GQ +WL
Sbjct: 40 TPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,155,927
Number of Sequences: 62578
Number of extensions: 83951
Number of successful extensions: 179
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 14
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)