BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031072
         (166 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C3N792|TMCA_SULIY Putative tRNA(Met) cytidine acetyltransferase OS=Sulfolobus
           islandicus (strain Y.G.57.14 / Yellowstone #1)
           GN=YG5714_1830 PE=3 SV=1
          Length = 743

 Score = 36.6 bits (83), Expect = 0.084,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 63  YLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGLTQEELF----LWLPVKGIIV----- 113
           Y +G  + KF   V       A + Y G + +E ++QEELF    L   V GI+V     
Sbjct: 391 YAKGDPIEKFMFDVFLLDAEPAEVMYNGELKIEDVSQEELFQDNNLLKSVYGILVTAHYR 450

Query: 114 NDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGDLVDK 155
           N P   ++L D+   +  +  S  +   VC+ +  EGDL D+
Sbjct: 451 NSPDDLMLLGDMAFQKIVVGYSSEKPIAVCQVVS-EGDLTDR 491


>sp|Q6M0Y7|MFNA_METMP L-tyrosine decarboxylase OS=Methanococcus maripaludis (strain S2 /
           LL) GN=mfnA PE=3 SV=1
          Length = 384

 Score = 33.1 bits (74), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 7   LTQKSIFILLLTLSLLLPLTATSSLKNLLESRGLPGGLFPENVKSYNLDQ-NGRLEVYLE 65
           L  K+ F  L++      LTA  + KN+ +S+G P  +       ++ D+    +++ + 
Sbjct: 73  LHNKNAFGYLISGGTEANLTAMRAFKNISKSKGKPQNIIIPETAHFSFDKAKDMMDLNVV 132

Query: 66  GPCMAKF---DTRVLFDSVVRANLSYGGLVGLEGLTQ 99
            P + K+   D + + D +  +     G+VG+ G T+
Sbjct: 133 RPPLTKYFTMDVKFIKDYIEDSKNEVSGIVGIAGCTE 169


>sp|B2AH89|RSMA_CUPTR Ribosomal RNA small subunit methyltransferase A OS=Cupriavidus
           taiwanensis (strain R1 / LMG 19424) GN=rsmA PE=3 SV=1
          Length = 277

 Score = 31.6 bits (70), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 82  VRANLSYGGLVGLEGLTQEELFLWLPVKGII-VNDPSSGLILIDIGLARKQLSLSLFEDP 140
           +R+N+ + G V  +   Q  L     + GI+    P +G +L++IG     L+  L E  
Sbjct: 1   MRSNV-HQGHVARKRFGQNFLVDDTIIHGIVNAISPQAGDVLVEIGPGLGALTDPLLERI 59

Query: 141 PVCKHIQVEGDLVDKARRKLGFQVQ 165
           P  + ++++ DLV++ RR+ G ++Q
Sbjct: 60  PQMQVVELDRDLVERLRRRYGERLQ 84


>sp|Q1JUQ1|ARADA_AZOBR L-arabonate dehydratase OS=Azospirillum brasilense GN=araC PE=1
           SV=1
          Length = 583

 Score = 30.8 bits (68), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 60  LEVYLEGPCMAKFDTRVLFDSVVRANLSYGG 90
           +E+ LEG  ++K  TR  F++ +RAN + GG
Sbjct: 242 VEMALEGLVLSKILTRAAFENAIRANAAIGG 272


>sp|Q8YWR1|TRUB_NOSS1 tRNA pseudouridine synthase B OS=Nostoc sp. (strain PCC 7120 / UTEX
           2576) GN=truB PE=3 SV=1
          Length = 293

 Score = 30.4 bits (67), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 111 IIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHIQVEGD-LVDKARR 158
           II + P  GL L ++  A  Q    + + PP+   IQVEG  L D AR+
Sbjct: 84  IITSQPCRGLSLSEVKTALPQFIGKIEQIPPIYSAIQVEGKRLYDLARK 132


>sp|Q8A5W4|SYK_BACTN Lysine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
           29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=lysS
           PE=3 SV=1
          Length = 576

 Score = 30.0 bits (66), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 55  DQNGRLEVYLEGPCMAKFDTRVLFDSVVRANLSYGGLVGLEGL 97
           D  GR++VY+    +   + + L++SV +  L  G  VG+EG 
Sbjct: 77  DSKGRIQVYITRDDICPGEDKELYNSVFKRLLDLGDFVGIEGF 119


>sp|B6JCH9|RNPH_OLICO Ribonuclease PH OS=Oligotropha carboxidovorans (strain ATCC 49405
          / DSM 1227 / OM5) GN=rph PE=3 SV=1
          Length = 238

 Score = 30.0 bits (66), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 41 PGGLFPENVKSYNLDQNGRLEVYLEGPCMAKF-DTRVLFDSVVRANL 86
          P G  P  ++  +L++   +  Y EG CM KF DTRVL  + +   L
Sbjct: 3  PSGRAPNELRPVSLERG--VVKYAEGSCMVKFGDTRVLVTATLEERL 47


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.142    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,208,467
Number of Sequences: 539616
Number of extensions: 2406282
Number of successful extensions: 5003
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4995
Number of HSP's gapped (non-prelim): 12
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)